BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035754
(335 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
Length = 596
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/312 (33%), Positives = 172/312 (55%), Gaps = 7/312 (2%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
++ LA+DQ G ++LQ S D ++ +F + + ELM +G ++ K +E CNE
Sbjct: 282 IYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNED 341
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q I+ IT + L + S D G+ +V+K+++ A + ++SALK L+
Sbjct: 342 QRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVET-AKREEEISIIISALKHGIVHLIKN 400
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
G+ V+ +CL+ + F+++AA+ HC+ LA GC L + +G +++ ++
Sbjct: 401 VNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVS 460
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
I+ NA LS+ GNYV+Q+V L+ + I L G+Y +LS+ KC S VV+KCLK
Sbjct: 461 EIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLK 520
Query: 254 YQNAVH--YIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHL 311
+ H II EL+N ++ QV D YGNYVIQ AL +Q + +VH LV ++ ++
Sbjct: 521 LADDKHRARIIRELINYGRLDQVMLDPYGNYVIQAAL----KQSKGNVHALLVDAIKLNI 576
Query: 312 AALRVMKYGSNV 323
++LR YG V
Sbjct: 577 SSLRTNPYGKKV 588
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana
GN=APUM8 PE=3 SV=2
Length = 515
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 164/312 (52%), Gaps = 7/312 (2%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
++ +A+DQ G ++LQ G + +F V ELM +G ++ K ++ CNE
Sbjct: 203 VYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQKLLDVCNEE 262
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q IIL +T + + S++ +G+ V++L++ + + V SAL+ F L+
Sbjct: 263 QRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISL-VKSALRPGFLNLIRD 321
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
G+ VI +CL+ N+FI++ A + C+ +A H GC L I G +R++++
Sbjct: 322 LNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQREKLVT 381
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
IS N+ L++ GNY VQ VL L D I A+ L+GHYV+LS+ K S +V++CL
Sbjct: 382 EISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLT 441
Query: 254 Y-QNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHLA 312
+ + I+ EL++ + D Y N+VIQ ALA T + S+H LV ++ H +
Sbjct: 442 HCPESRPQIVRELISVPHFDILIQDPYANFVIQAALAVT----KGSLHATLVEVIRPH-S 496
Query: 313 ALRVMKYGSNVY 324
LR Y ++
Sbjct: 497 ILRNNPYCKRIF 508
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana
GN=APUM7 PE=3 SV=2
Length = 650
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 156/312 (50%), Gaps = 7/312 (2%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
++ +A+DQ G ++LQ G S +F V ELM +G ++ K ++ C E
Sbjct: 338 VYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLDVCTEE 397
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q I+L T + + S++ +G+ V++L++ + + V AL+ F L+
Sbjct: 398 QRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISL-VKLALRPGFLDLIKD 456
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
G+ VI +CL+ N FI+ AA + C +A H GC L I +R++++
Sbjct: 457 LNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIA 516
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
IS N+ L++ GNY VQ V+ L P + + L+GHYV LS+ K S +V++CL
Sbjct: 517 EISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLM 576
Query: 254 Y-QNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHLA 312
+ + I+ EL++ Q+ D Y N+VIQ ALA T + +H LV ++ H +
Sbjct: 577 HCPESRPQIVRELVSVPHFDQLLQDPYANFVIQAALAAT----KGPLHASLVEVIRPH-S 631
Query: 313 ALRVMKYGSNVY 324
LR Y ++
Sbjct: 632 ILRNNPYCKRIF 643
>sp|Q9LDW3|PUM11_ARATH Pumilio homolog 11 OS=Arabidopsis thaliana GN=APUM11 PE=3 SV=2
Length = 556
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 165/312 (52%), Gaps = 9/312 (2%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
++ +A+DQ G + LQ+ + G+ + +F V EL + +G ++ K IE CNE
Sbjct: 246 VYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTDPFGNYLIQKLIEVCNEE 305
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q I++++T + L + S++ +G+ V+KLI+ V + V SAL F L
Sbjct: 306 QRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVT-TKEQISLVKSALVPGFLSLFRE 364
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
G+ VIL CL+ + N FI +AA + C+ +A GC L + G + ++++
Sbjct: 365 LNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLVD 424
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
IS N+ L++ GNY+VQ++ +E + F LRG+YV L+ K GS VV+KCL+
Sbjct: 425 EISRNSLLLAQDPFGNYLVQYI--IEKKVGGVNVLFELRGNYVKLATQKFGSHVVEKCLR 482
Query: 254 -YQNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHLA 312
Y + I+ EL++ + D Y NYVIQ AL++T + V LV K++++
Sbjct: 483 YYPESRSQIVNELVSVLNFGYLLQDPYANYVIQCALSKT----KGFVRASLVEKVRRY-E 537
Query: 313 ALRVMKYGSNVY 324
L++ Y ++
Sbjct: 538 NLKMTPYCKRIF 549
>sp|Q9LXC5|PUM21_ARATH Putative pumilio homolog 21 OS=Arabidopsis thaliana GN=APUM21 PE=3
SV=1
Length = 517
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 136/255 (53%), Gaps = 5/255 (1%)
Query: 72 ESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLM 131
ES L I +T ++FL + +++GS +++ L + L LL+ A+ F LM
Sbjct: 246 ESHLFKIGSALTTTKRIFLHLATNQYGSQALRILFRRSPSLDHLLF---CAVDTNFFLLM 302
Query: 132 MTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQI 191
K G +I+ + K + +Y+ E+ L+LA E GC+ LNN + ++G R I
Sbjct: 303 SDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQEIRGIYRDLI 362
Query: 192 LHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKC 251
++ NA LS G +VVQ++L L++P AI LRG + L++ + GS+VV+KC
Sbjct: 363 FECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEKC 422
Query: 252 LKYQNAVHYIIEELL-NSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQH 310
LK A ++EE N+ + +++ DK+GN+V+Q+AL ++ + + V KL+ H
Sbjct: 423 LKSDFARDQVLEEFRGNAKEWVRMTTDKFGNFVVQSALRVMKEKEMRPLLREFVEKLRPH 482
Query: 311 LAALRVMKYGSNVYK 325
+ + + G N +
Sbjct: 483 FGKMEIGR-GRNTLR 496
>sp|Q1PFN9|PUM9_ARATH Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1
Length = 564
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 155/314 (49%), Gaps = 22/314 (7%)
Query: 10 TNHDLFSL----------AQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYG 59
+N+DL S+ A+DQ G + LQ+ + G + + EL +G
Sbjct: 240 SNNDLVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFG 299
Query: 60 RFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHV 119
++ K + +E Q LI+ +T + + ++ +G+ V+K+I+ V + V
Sbjct: 300 NYIVQKLFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIAL-V 358
Query: 120 MSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNF 179
S LK F L+ G+ VI CL+ + N+F+ +AA ++C +A H GC L
Sbjct: 359 KSGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCC 418
Query: 180 IDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAI--CFALRGHYVD 237
I N G +R++++ IS N+ LS+ GNYVVQ+++ + + A+ R HY +
Sbjct: 419 ISNSVGLQRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQ----VSAVKLLVQFRMHYAE 474
Query: 238 LSLTKCGSFVVQKCL-KYQNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDR 296
L+ K S V++KCL KY + I+ ELL + D Y NYVIQTAL+ T +
Sbjct: 475 LATQKFSSHVIEKCLRKYPESRAEIVRELLCVPNFEYLLQDPYANYVIQTALSVT----K 530
Query: 297 LSVHQRLVTKLQQH 310
V +LV K+ ++
Sbjct: 531 GPVRAKLVAKVYRY 544
>sp|Q9LP21|PUM10_ARATH Putative pumilio homolog 10 OS=Arabidopsis thaliana GN=APUM10 PE=3
SV=2
Length = 528
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 157/312 (50%), Gaps = 20/312 (6%)
Query: 17 LAQDQEGSQYLQENLSSG---DSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+A+DQ G + LQ+ + G DS+++ F + EL G ++ K + +E
Sbjct: 221 MARDQIGCRALQKLVEEGTVLDSKVI---FLEIIDHVVELSMDPLGNYIVQKLLVVSDEE 277
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q +I+ +T + + + ++ G+ ++K+IK V + V SAL+ F L+
Sbjct: 278 QRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIAL-VKSALEPGFLVLVND 336
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
G V+ CLE + N F+ +AA E+C LA H+ GC L + N G + ++++
Sbjct: 337 SNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTVGLQHERLVA 396
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCL- 252
IS ++ LS+ GNYVVQ ++ + + + R H ++L+ K S V++KCL
Sbjct: 397 EISRDSLRLSQDPFGNYVVQCLIDQQVSSV--NLLLPFRTHCIELATQKFSSHVIEKCLR 454
Query: 253 KYQNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHLA 312
KY + I+ ELL+ Q+ D Y NYVIQTAL+ T + +V RLV K++
Sbjct: 455 KYPESRAEIVRELLSYPNFEQLLQDPYANYVIQTALSVT----KGAVRARLVEKVK---- 506
Query: 313 ALRVMKYGSNVY 324
R K SN Y
Sbjct: 507 --RFGKLQSNPY 516
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 100/257 (38%), Gaps = 31/257 (12%)
Query: 90 LLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKR--------LFK-FLMMTKPGSSVI 140
LL D F + ++++ H LL H+ +KR FK LM S I
Sbjct: 124 LLGLQDSFNPNGFEEMMAFKDHKDFLLDHINEPIKRSPFLRGNDAFKGSLMFEGIRVSQI 183
Query: 141 LQCLE------PSYNHKN-----DFIYQAALEHCLYLACHEQ-GCINLNNFIDNMKGSRR 188
L +E P N D + + + L +Q GC L ++
Sbjct: 184 LAAMEGSGASYPDEPKINGGLPLDLVSMVEIYGSVNLMARDQIGCRALQKLVEEGTVLDS 243
Query: 189 KQILHLISVNAASLSRHRSGNYVVQHVLSLEDP---FLIDAICFALRGHYVDLSLTKCGS 245
K I I + LS GNY+VQ +L + D +I ++ + + + L G+
Sbjct: 244 KVIFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGT 303
Query: 246 FVVQKCLKYQNAVHYI--IEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRL 303
V+QK +K I ++ L L + ND G +V+Q+ L + D ++ +
Sbjct: 304 RVIQKMIKTVKTKQQIALVKSALEPG-FLVLVNDSNGYHVLQSCLEFLVPND----NKFV 358
Query: 304 VTKLQQHLAALRVMKYG 320
V ++ A L +YG
Sbjct: 359 VEAATEYCAQLATHQYG 375
>sp|Q9LVG3|PUM18_ARATH Pumilio homolog 18 OS=Arabidopsis thaliana GN=APUM18 PE=2 SV=1
Length = 327
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 144/276 (52%), Gaps = 8/276 (2%)
Query: 51 FELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVA 110
F LM+ G F + I + ++++L + +T F+ KFGS V+KL+
Sbjct: 46 FNLMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSD 105
Query: 111 HLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHE 170
+ +A+ R F + K S V ++ + +Y+ L H L LAC +
Sbjct: 106 DVDAFF---CAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 171 QGCINLNNFIDNMKGSR-RKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICF 229
GCI LN+ I + R Q+L L++ NA LS SGN+VVQHVL+L D I I
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAV 222
Query: 230 ALRGHYVDLSLTKCGSFVVQKCLKYQNAVHYIIEELL--NSDQILQVANDKYGNYVIQTA 287
L G ++LS K GS++V+K L+ + ++ ++ ELL + D+++++A +++GN+V+ A
Sbjct: 223 NLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKA 282
Query: 288 LAETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSNV 323
L T + R+ + LV KL + LR +GSN+
Sbjct: 283 LRFT-KMSRMDLFWGLVQKLMPFIRLLR-RSHGSNI 316
>sp|Q92359|YDHE_SCHPO Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6G9.14 PE=4 SV=1
Length = 681
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 155/326 (47%), Gaps = 14/326 (4%)
Query: 11 NHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESC 70
N ++ S +DQ G +YLQ L + +D +F + LM +G ++ K E
Sbjct: 345 NSNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHA 404
Query: 71 NESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFL 130
+E+Q + I I + + S + G+ +++K+I +V+ P + +++AL+ L
Sbjct: 405 SEAQRSTFIQIIAPK---LVPISFNMHGTRALQKIIDLVSS-PDQISCIVNALRPNVVLL 460
Query: 131 MMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQ 190
G+ VI +CL FI+ A E L ++ H GC + D+ ++ +Q
Sbjct: 461 TKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQ 520
Query: 191 ILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQK 250
++ I +A +L + GNYV+Q+VL L +P +AI LS K S V++K
Sbjct: 521 LVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEK 580
Query: 251 CLKYQNAV--HYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQR--LVTK 306
C+ + A +I EL++ + ++ D + NYVIQTAL D SV QR LV +
Sbjct: 581 CIFFAPAAIKEKLISELMDEKHLPKLLRDSFANYVIQTAL------DNASVKQRAELVER 634
Query: 307 LQQHLAALRVMKYGSNVYKWTTASHP 332
++ + +++ G + HP
Sbjct: 635 IKPLIPSIKNTPCGRRILSKLERRHP 660
>sp|Q9LSS8|PUM19_ARATH Putative pumilio homolog 19 OS=Arabidopsis thaliana GN=APUM19 PE=3
SV=2
Length = 327
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 143/276 (51%), Gaps = 8/276 (2%)
Query: 51 FELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVA 110
F LM+ G F + I ++++L + +T F+ KFGS V+KL+
Sbjct: 46 FNLMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSD 105
Query: 111 HLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHE 170
+ +A+ R F + K S V ++ + +Y+ L H L LAC +
Sbjct: 106 DVDAFF---CAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 171 QGCINLNNFIDNMKGSR-RKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICF 229
GCI LN+ I + R Q+L L+ NA LS SGN+VVQHVL+L D I I
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAV 222
Query: 230 ALRGHYVDLSLTKCGSFVVQKCLKYQNAVHYIIEELL--NSDQILQVANDKYGNYVIQTA 287
L G ++LS K GS++V+K L+ + ++ ++ ELL + D+++++A +++GN+V+ A
Sbjct: 223 NLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKA 282
Query: 288 LAETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSNV 323
L T ++ R+ + LV KL + LR +G+N+
Sbjct: 283 LRFT-KEMRMDLFWGLVQKLMPFIHLLR-RSHGNNI 316
>sp|Q9FIE9|PUM16_ARATH Putative pumilio homolog 16 OS=Arabidopsis thaliana GN=APUM16 PE=3
SV=2
Length = 332
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 89 FLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSY 148
F++ + +K GS +++KL+ + + + A+ RLF +M K S V +Q +
Sbjct: 87 FMVITTNKNGSKTLQKLMGMSDDMDVFFFE---AIMRLFIHVMTDKYASYVTIQGMRVFQ 143
Query: 149 NHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR-RKQILHLISVNAASLSRHRS 207
K + +Y L + +LA + GCI LN I ++ R Q+L +++ NA LS
Sbjct: 144 QDKRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAY 203
Query: 208 GNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQN-AVHYIIEELL 266
GN+VVQHVL L D I L G+ V+LS K GS++V++ L+ + + ++ +LL
Sbjct: 204 GNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLEAGDVPMATVVLDLL 263
Query: 267 --NSDQILQVANDKYGNYVIQTALAET 291
++ ++++A +YGN+V+ AL T
Sbjct: 264 ACKTEMLIRLARSEYGNFVVCKALELT 290
>sp|P25339|PUF4_YEAST Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF4 PE=1 SV=2
Length = 888
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 143/294 (48%), Gaps = 21/294 (7%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ SL +DQ G ++LQ+ L S+ D +F +T ELM+ +G ++ K +E
Sbjct: 568 IHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTE 627
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVV-----AHLPPLLYHVMSALKRLFK 128
Q +++ KI+ F+ S++ G+ +++KLI+ + A + V+ +L+
Sbjct: 628 Q-RIVLTKIS--SPHFVEISLNPHGTRALQKLIECIKTDEEAQI------VVDSLRPYTV 678
Query: 129 FLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRR 188
L G+ VI +CL+ FI+ A + C+ +A H GC L +D+ +
Sbjct: 679 QLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQC 738
Query: 189 KQILHLISVNAASLSRHRSGNYVVQHVLSLEDP----FLIDAICFALRGHYVDLSLTKCG 244
+ + L+ GNYVVQ++++ E I L+ ++LS+ K G
Sbjct: 739 DNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFG 798
Query: 245 SFVVQKCLKYQNAVHYIIEELLNSD---QILQVANDKYGNYVIQTALAETMRQD 295
S V++K LK +I E+LN+ I + ND YGNYV+QTAL + +Q+
Sbjct: 799 SNVIEKILKTAIVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQN 852
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 130 LMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRK 189
LM G+ +I + LE + + + + H + ++ + G L I+ +K
Sbjct: 607 LMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEA 666
Query: 190 QIL-HLISVNAASLSRHRSGNYVVQHVLSLEDP----FLIDAICFALRGHYVDLSLTKCG 244
QI+ + LS+ +GN+V+Q L P F+ DAI + +D++ + G
Sbjct: 667 QIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSC----IDIATHRHG 722
Query: 245 SFVVQKCLKYQNAVHYIIEELLN-SDQILQVAN----DKYGNYVIQTALAETMRQDRLSV 299
V+Q+CL H E+ N D++L + + D +GNYV+Q + + +++
Sbjct: 723 CCVLQRCLD-----HGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDY 777
Query: 300 HQRLVTKLQQHLAALRVMKYGSNV 323
++V L+ L + K+GSNV
Sbjct: 778 THKIVHLLKPRAIELSIHKFGSNV 801
>sp|Q9C8B8|PUM17_ARATH Putative pumilio homolog 17 OS=Arabidopsis thaliana GN=APUM17 PE=5
SV=2
Length = 332
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 130/254 (51%), Gaps = 22/254 (8%)
Query: 82 ITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSVIL 141
+T F++ + +K GS S++KL+++ + + A+ RLF +M+ K S V +
Sbjct: 80 LTSDSDYFMVITRNKNGSKSLQKLMRMSDDMDVFFF---VAIMRLFIHVMIDKYASYVAI 136
Query: 142 QCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR-RKQILHLISVNAA 200
Q + K + +Y L + L+LA + GCI LN I + R +++ ++S NA
Sbjct: 137 QGMRIFKQDKRELMYDHILRYALFLARDQYGCIALNEIIKELDDPYYRDELMDIVSNNAL 196
Query: 201 SLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQN-AVH 259
LS GN+VVQHVL L D I L G+ V+LS K GS++V++ L+ ++ +
Sbjct: 197 LLSNDAYGNFVVQHVLKLHDSRCTGNIADKLCGYCVELSFKKYGSYIVERLLEVRDIPMA 256
Query: 260 YIIEELL--NSDQILQVANDKYGNYV----------IQTA-----LAETMRQDRLSVHQR 302
I+ +LL ++ ++++A + GN+V I TA L +R R +H+
Sbjct: 257 TIVLDLLACKTEMLIRLARSENGNFVVCKLLELTNDILTADLFYSLVNKLRPYRFLLHRF 316
Query: 303 LVTKLQQHLAALRV 316
+K+ L ++RV
Sbjct: 317 PESKIVAILGSMRV 330
>sp|O81465|PUM15_ARATH Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1
Length = 477
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 137/296 (46%), Gaps = 18/296 (6%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
L S A+D S LQ ++ G +DK+F + ELM YG VF K +E C +
Sbjct: 155 LLSRAKDGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDE 214
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q+ ++ + + F+ V G+ +++ L++ + + M L + L++T
Sbjct: 215 QITRVLDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCS-EEQISRFMETL--CYVSLLLT 271
Query: 134 KP--GSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQI 191
K VIL C ++ + +++C +A + GC L I R +
Sbjct: 272 KDVIAHRVILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPL 331
Query: 192 LHLISVNAASLSRHRSG----------NYVVQHVLSLEDPFLIDAICFALRGHYVDLSLT 241
+ I A L + G NYVVQ++L L+D + A+ L G+YV LS
Sbjct: 332 IKEIISIAVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYD 391
Query: 242 KCGSFVVQKCLKYQN-AVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDR 296
K GS VVQKCL+ + + II ELL+ L V D YG+YVIQTA + +D+
Sbjct: 392 KYGSHVVQKCLESREFSSRRIIAELLSDIDSLLV--DPYGDYVIQTAWIVSEVRDK 445
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6
PE=1 SV=1
Length = 861
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 147/325 (45%), Gaps = 25/325 (7%)
Query: 10 TNHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIES 69
T H + + DQ GS+++Q+ L + +F + +LM+ +G +V KF E
Sbjct: 534 TGH-IVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEY 592
Query: 70 CNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKF 129
N +Q + ++ Q + S+ +G ++K + V+ P + L
Sbjct: 593 GNSTQRKELADQLMGQ---IVPLSLQMYGCRVIQKALDVIE--PDQRVRLARELDGQVMR 647
Query: 130 LMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRR- 188
+ + G+ VI +C+E K F+ A L+ H GC + ++ +
Sbjct: 648 CVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQC 707
Query: 189 ----KQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCG 244
++IL + V LS+ + GNYV QHVL + I L GH V LSL K
Sbjct: 708 RFITEEILESVCV----LSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFA 763
Query: 245 SFVVQKCLKYQNAVHY--IIEELLNSDQ----ILQVANDKYGNYVIQTALAETMRQDRLS 298
S V++KCL+Y V II+E+ D+ +L + D+YGNYV+Q RL+
Sbjct: 764 SNVIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLT 823
Query: 299 VHQRLVTKLQQHLAALRVMKYGSNV 323
L ++++ H +AL+ YG ++
Sbjct: 824 ----LFSRVRMHASALKKYTYGKHI 844
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 165 YLACHEQGCIN------LNNFIDNMK-GSRRKQILHLISVNAASLSRHRSGNYVVQHVLS 217
Y QG + L NF++ +K G R+ L I+ + S + G+ +Q L
Sbjct: 496 YPGWQPQGSLEGANGPRLCNFLEELKSGKGRRFDLSDITGHIVEFSADQHGSRFIQQKLE 555
Query: 218 LEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNAVHY--IIEELLNSDQILQVA 275
P A+ + H L G++V+QK +Y N+ + ++L+ QI+ ++
Sbjct: 556 NCKPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMG--QIVPLS 613
Query: 276 NDKYGNYVIQTAL 288
YG VIQ AL
Sbjct: 614 LQMYGCRVIQKAL 626
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2
Length = 1533
Score = 89.7 bits (221), Expect = 3e-17, Method: Composition-based stats.
Identities = 79/321 (24%), Positives = 150/321 (46%), Gaps = 22/321 (6%)
Query: 11 NHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESC 70
NH + +QDQ GS+++Q+ L + +F + + LM+ +G +V KF E
Sbjct: 1114 NH-IVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKFFEFG 1172
Query: 71 NESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFL 130
Q + +++ L ++ +G ++K ++ ++ P ++ L
Sbjct: 1173 TPEQKNTLGMQVKGH---VLQLALQMYGCRVIQKALESIS--PEQQQEIVHELDGHVLKC 1227
Query: 131 MMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQ 190
+ + G+ V+ +C+E FI A L+ H GC + +++ +
Sbjct: 1228 VKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTP 1287
Query: 191 ILHLISVNAASLSRHRSGNYVVQHVLS---LED-PFLIDAICFALRGHYVDLSLTKCGSF 246
IL + + L + + GNYV+QHVL ED LI+++ RG + LS K S
Sbjct: 1288 ILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSV----RGKVLVLSQHKFASN 1343
Query: 247 VVQKCLKYQNAVHY--IIEEL--LNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQR 302
VV+KC+ + +I+E+ N + + + D+Y NYV+Q + + +L ++
Sbjct: 1344 VVEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQK-MIDVSEPTQL---KK 1399
Query: 303 LVTKLQQHLAALRVMKYGSNV 323
L+TK++ H+AALR YG ++
Sbjct: 1400 LMTKIRPHMAALRKYTYGKHI 1420
Score = 37.4 bits (85), Expect = 0.15, Method: Composition-based stats.
Identities = 50/247 (20%), Positives = 98/247 (39%), Gaps = 13/247 (5%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ LA G + +Q+ L S ++ + G + + Q G V K IE +
Sbjct: 1188 VLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPV 1247
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIK--VVAHLPPLLYHVMSALKRLFKFLM 131
L II F+ Q++ L S +G ++++++ P+L + ++L +
Sbjct: 1248 ALQFII--NAFKGQVYSL-STHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQ--- 1301
Query: 132 MTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDN-MKGSRRKQ 190
+ G+ VI LE + + L L+ H+ + + + +G R
Sbjct: 1302 -DQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGL 1360
Query: 191 ILHLISVNAASLS---RHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFV 247
I + + N +L + + NYVVQ ++ + +P + + +R H L G +
Sbjct: 1361 IDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKHI 1420
Query: 248 VQKCLKY 254
K KY
Sbjct: 1421 NAKLEKY 1427
>sp|Q9XI17|PUM20_ARATH Putative pumilio homolog 20 OS=Arabidopsis thaliana GN=APUM20 PE=5
SV=2
Length = 332
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 121/232 (52%), Gaps = 8/232 (3%)
Query: 65 KFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALK 124
+ I ++ +L + +T FL+ + + GS ++KL+ + L +A+
Sbjct: 70 QMISKLDQRKLQTMASLLTSDPDYFLMIARNMNGSKRIQKLLGKTDDVDALF---AAAIL 126
Query: 125 RLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMK 184
R F ++ K S V+ + + K +Y+ L + ++A + G + LN+ I +
Sbjct: 127 RRFLHIITDKYASYVVRRGMTVFDKKKKKAMYEHILHYASHIARDKHGNLALNDIITD-- 184
Query: 185 GSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCG 244
+ R ++ +I+ A LS GN+V+Q VL L D + I +LRGH+VDLS K G
Sbjct: 185 -AYRNKLFDVIAHKALVLSNDAYGNFVIQRVLKLNDLRSKNNIVVSLRGHFVDLSFQKYG 243
Query: 245 SFVVQKCLKYQNAVHYIIEELL--NSDQILQVANDKYGNYVIQTALAETMRQ 294
S+VV L+ + ++ ++EEL+ D ++++A ++YGN+++ AL T ++
Sbjct: 244 SYVVDVLLETKESMVVVVEELMECEGDMLMRLARNEYGNFLVCKALRVTQKE 295
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
Length = 961
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 147/314 (46%), Gaps = 22/314 (7%)
Query: 20 DQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALII 79
DQ GS+++Q+ L +F V +LM+ +G +V KFIE +Q ++
Sbjct: 639 DQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELV 698
Query: 80 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLM---MTKPG 136
++ Q + S+ +G ++K ++V+ + ++ L ++ + G
Sbjct: 699 KQLAGQ---MVSLSLQMYGCRVIQKALEVID-----VDQKTELIRELDGNVLKCVRDQNG 750
Query: 137 SSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQ-ILHLI 195
+ VI +C+E + F+ A L+ H GC + +++ I+ I
Sbjct: 751 NHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEI 810
Query: 196 SVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQ 255
+A +L+ + GNYV QHVL P I L G+ V +S K S VV+KCL++
Sbjct: 811 LESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHA 870
Query: 256 NAV--HYIIEELLNSDQ----ILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQ 309
++ ++IEE++ + +L + D++ NYV+Q L + Q R + LV +++
Sbjct: 871 DSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQR----EILVQRMKI 926
Query: 310 HLAALRVMKYGSNV 323
HL +LR YG ++
Sbjct: 927 HLQSLRKYTYGKHI 940
>sp|Q4PSD1|PUM14_ARATH Pumilio homolog 14 OS=Arabidopsis thaliana GN=APUM14 PE=2 SV=1
Length = 518
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 156/316 (49%), Gaps = 18/316 (5%)
Query: 16 SLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQL 75
+ A+D+E S+ L ++ G +D ++ + G ELM YG V + C+ Q+
Sbjct: 207 AFAKDKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQI 266
Query: 76 ALIILKITFQDQLFLLASVDKFGSSSVKKLIKVV-AHLPPLLYHVMSALKRLFKFLMMTK 134
++ +T Q F+ +D G+++++ L+ + + ++ ++ + L +
Sbjct: 267 VQLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVALQLSKSN 326
Query: 135 PGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINL-----NNFIDNMKGSRRK 189
VIL C H + + +++C +A + GC L + + N++ R++
Sbjct: 327 HAIFVILACFRLFPLHCR-LLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLE-IRQR 384
Query: 190 QILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQ 249
I+ I+ NA L + GNYVVQ+++ L + +LIDA+ L G+Y L+ K GS VQ
Sbjct: 385 LIMEAIA-NALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQ 443
Query: 250 KCLK--YQNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKL 307
K LK + ++ +I+ L D +L D +GNYVIQTA + + V + L +
Sbjct: 444 KLLKLRWIDSRVIVIDLLREIDTLLL---DPFGNYVIQTAWFVS----KDDVRRMLRYHI 496
Query: 308 QQHLAALRVMKYGSNV 323
++++ +R K+G+ V
Sbjct: 497 ERNIPMMRCNKFGNKV 512
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
Length = 1003
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 150/320 (46%), Gaps = 22/320 (6%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ + DQ GS+++Q+ L + + +F + + LM+ +G +V KF E
Sbjct: 669 VIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTK 728
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMM- 132
Q + ++T L S+ +G ++K ++VV L +K L +M
Sbjct: 729 QRKELAEQVTGH---VLALSLQMYGCRVIQKALEVVE-----LEQQARMVKELDGSVMKC 780
Query: 133 --TKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKG-SRRK 189
+ G+ VI +C+E FI + L L+ H GC + ++++ ++
Sbjct: 781 VHDQNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQR 840
Query: 190 QILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQ 249
I+ I + +L++ + GNYV+QH++ P I L G V +S K S VV+
Sbjct: 841 IIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVE 900
Query: 250 KCLKYQNAVHY--IIEELL---NSDQILQ-VANDKYGNYVIQTALAETMRQDRLSVHQRL 303
KCL + ++ E+L + ++ LQ + D +GNYV+Q L ET L++ +
Sbjct: 901 KCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVL-ETCDDQSLAL---I 956
Query: 304 VTKLQQHLAALRVMKYGSNV 323
+++++ HL AL+ YG ++
Sbjct: 957 LSRIKVHLNALKRYTYGKHI 976
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
Length = 968
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 149/323 (46%), Gaps = 28/323 (8%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ + DQ GS+++Q+ L + + + ++ + LM+ +G +V KF E
Sbjct: 635 VVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKFFEH---- 690
Query: 74 QLALIILKITFQDQLF---LLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFL 130
L + ++LF L S+ +G ++K I+VV L + +K L +
Sbjct: 691 --GLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVD-----LDQKIKMVKELDGHV 743
Query: 131 MM---TKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDN-MKGS 186
M + G+ V+ +C+E +FI H + L+ H GC + +++
Sbjct: 744 MRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPD 803
Query: 187 RRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSF 246
+ +++ I + L++ + GNYVVQHVL P I L G V +S K S
Sbjct: 804 TQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASN 863
Query: 247 VVQKCLKYQNAVHY--IIEELLNS---DQILQ-VANDKYGNYVIQTALAETMRQDRLSVH 300
VV+KCL + ++ E+L + ++ LQ + D++ NYV+Q L Q R
Sbjct: 864 VVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQR---- 919
Query: 301 QRLVTKLQQHLAALRVMKYGSNV 323
+ ++T+++ HL AL+ YG +V
Sbjct: 920 ELILTRIKVHLTALKKYTYGKHV 942
>sp|Q9FMH4|PUM13_ARATH Putative pumilio homolog 13 OS=Arabidopsis thaliana GN=APUM13 PE=3
SV=1
Length = 527
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 144/314 (45%), Gaps = 11/314 (3%)
Query: 15 FSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQ 74
FS+A D+ S+ L++ + G +D +F + ELM +G V I C+ Q
Sbjct: 214 FSIATDRVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQ 273
Query: 75 LALIILKITFQDQLFLLASVDKFGSSSVKKLIKVV-AHLPPLLYHVMSALKRLFKFLMMT 133
+ LI+ +T F+ + G+ +++ L+ + + +M A+ + L
Sbjct: 274 IILIVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTRN 333
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR---RKQ 190
VIL C + + + + +HC +A + GC L D + R++
Sbjct: 334 TNAKYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQR 393
Query: 191 ILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQK 250
++ + +A L + GNYVVQ+V+ L++ D + L +Y L+ K GS VVQK
Sbjct: 394 LISEVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQK 453
Query: 251 CLKYQN-AVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQ 309
LK + I+ +LL L + D +GNYVIQTA + + V Q L +++
Sbjct: 454 LLKLRGIDSKLIVVDLLRGIDTLLL--DPFGNYVIQTAWFVS----KEDVRQMLRYYIER 507
Query: 310 HLAALRVMKYGSNV 323
++ +R K+G+ +
Sbjct: 508 NIRLMRCNKFGNKI 521
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1
Length = 964
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 149/320 (46%), Gaps = 22/320 (6%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ + DQ GS+++Q+ L + + + ++ + LM+ +G +V KF E
Sbjct: 631 VVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLPP 690
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMM- 132
Q + K+ D + L S+ +G ++K I+VV L + +K L +M
Sbjct: 691 QRRELGEKLI--DNVLPL-SLQMYGCRVIQKAIEVVD-----LDQKIQMVKELDGHVMRC 742
Query: 133 --TKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDN-MKGSRRK 189
+ G+ V+ +C+E +FI H + L+ H GC + +++ +
Sbjct: 743 VRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQS 802
Query: 190 QILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQ 249
+++ I + L++ + GNYVVQHVL P I L G V +S K S VV+
Sbjct: 803 KVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVE 862
Query: 250 KCLKYQNAVHY--IIEELLNS---DQILQ-VANDKYGNYVIQTALAETMRQDRLSVHQRL 303
KCL + ++ E+L + ++ LQ + D++ NYV+Q L Q R + +
Sbjct: 863 KCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQR----ELI 918
Query: 304 VTKLQQHLAALRVMKYGSNV 323
+T+++ HL AL+ YG ++
Sbjct: 919 LTRIKVHLNALKKYTYGKHI 938
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
Length = 972
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 149/323 (46%), Gaps = 28/323 (8%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ + DQ GS+++Q+ L + S + ++ + LM+ +G +V KF E
Sbjct: 639 VVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFEH---- 694
Query: 74 QLALIILKITFQDQLF---LLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFL 130
L + D+LF L S+ +G ++K I+VV L + +K L +
Sbjct: 695 --GLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVD-----LDQKIKMVKELDGHV 747
Query: 131 MM---TKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDN-MKGS 186
M + G+ V+ +C+E +FI + + L+ H GC + +++
Sbjct: 748 MRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPD 807
Query: 187 RRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSF 246
+ +++ I + L++ + GNYV+QHVL P I L G V +S K S
Sbjct: 808 TQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASN 867
Query: 247 VVQKCLKYQNAV--HYIIEELL---NSDQILQ-VANDKYGNYVIQTALAETMRQDRLSVH 300
VV+KCL + +++ E+L + ++ LQ + D++ NYV+Q L Q R
Sbjct: 868 VVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQR---- 923
Query: 301 QRLVTKLQQHLAALRVMKYGSNV 323
+ ++ +++ HL AL+ YG ++
Sbjct: 924 ELILGRIKVHLNALKKYTYGKHI 946
>sp|O94462|PUF3_SCHPO mRNA-binding protein puf3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=puf3 PE=2 SV=4
Length = 732
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 145/312 (46%), Gaps = 18/312 (5%)
Query: 17 LAQDQEGSQYLQENLSSGDSRILDKLFW-VVSGFTFELMSGQYGRFVFGKFIESCNESQL 75
+ DQ GS+++Q+ L++ + +F + S +LM +G +V K+ E NE Q
Sbjct: 404 FSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQK 463
Query: 76 ALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKP 135
+++ +I + +F L S+ +G V+K I+ ++ P ++ L + +
Sbjct: 464 QILLSQI--KGHVFSL-SLQMYGCRVVQKAIEYIS--PEHQVQLIQELDGHVLDCVCDQN 518
Query: 136 GSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLI 195
G+ VI + +E FI +A L+ H GC + I++ S RK I+ +
Sbjct: 519 GNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCH-SERKLIIEEL 577
Query: 196 SVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQ 255
+ L++ + GNYVVQH+L I + H + LS K S VV++C+ Y
Sbjct: 578 LPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISYI 637
Query: 256 NAV-------HYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQ 308
+ V I E+ N ++ + DKY NYVIQ L + ++R L++ +
Sbjct: 638 SDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEER----DLLISYIY 693
Query: 309 QHLAALRVMKYG 320
H++ L+ YG
Sbjct: 694 PHISVLKKFTYG 705
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 7/195 (3%)
Query: 130 LMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRK 189
LMM G+ V+ + E + + H L+ GC + I+ + +
Sbjct: 441 LMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQV 500
Query: 190 QILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQ 249
Q++ + + ++GN+V+Q + D + I ALR LS G V+Q
Sbjct: 501 QLIQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQ 560
Query: 250 KCLKY-QNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQ 308
+ +++ + IIEELL IL++ D+YGNYV+Q L D+ + ++
Sbjct: 561 RAIEHCHSERKLIIEELL--PHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMI---- 614
Query: 309 QHLAALRVMKYGSNV 323
HL L K+ SNV
Sbjct: 615 DHLLFLSCHKFASNV 629
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 37/222 (16%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+FSL+ G + +Q+ + +L + G + + Q G V K IE +
Sbjct: 474 VFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLDCVCDQNGNHVIQKAIECIDTG 533
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLI-------KVVAHLPPLLYHVMSALKRL 126
L I+ + + Q+ +L S +G +++ I K++ + LL H++
Sbjct: 534 HLQFILRAL--RPQIHVL-SAHPYGCRVIQRAIEHCHSERKLI--IEELLPHILK----- 583
Query: 127 FKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHE------QGCINLNNFI 180
L + G+ V+ L +I+ ++H L+L+CH+ + CI+ + +
Sbjct: 584 ---LTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISYISDV 640
Query: 181 DNMKGSRRKQILHLISVNAASLS------RHRSGNYVVQHVL 216
D RR+ + +IS A + S + + NYV+Q +L
Sbjct: 641 D-----RRRILNKIISEKAENCSILMLMMKDKYANYVIQKLL 677
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2
Length = 1066
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 139/319 (43%), Gaps = 18/319 (5%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q+ L +F + ++LM+ +G +V KF E +
Sbjct: 731 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 790
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I L ++ +G ++K ++ ++ ++ ++ L +
Sbjct: 791 QKLALATRIRGH---VLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKD 847
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 848 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILE 907
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG + LS K S VV+KC+
Sbjct: 908 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVT 967
Query: 254 YQNAVHY--IIEELLNSDQILQVA-----NDKYGNYVIQTALAETMRQDRLSVHQR--LV 304
+ + +I+E+ + A D+Y NYV+Q + D QR ++
Sbjct: 968 HASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMI------DMAEPAQRKIIM 1021
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+ LR YG ++
Sbjct: 1022 HKIRPHITTLRKYTYGKHI 1040
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2
Length = 1066
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 141/319 (44%), Gaps = 18/319 (5%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q+ L +F + ++LM+ +G +V KF E +
Sbjct: 731 IVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 790
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMT 133
Q + +I + + LA + +G ++K ++ ++ ++ ++ L +
Sbjct: 791 QKLALATRI--RGHVLPLA-LQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKD 847
Query: 134 KPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILH 193
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 848 QNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILE 907
Query: 194 LISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLK 253
+ + L + + GNYV+QHVL P I +RG + LS K S VV+KC+
Sbjct: 908 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVT 967
Query: 254 YQNAVHY--IIEELLNSDQILQVA-----NDKYGNYVIQTALAETMRQDRLSVHQR--LV 304
+ + +I+E+ + A D+Y NYV+Q + D QR ++
Sbjct: 968 HASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMI------DMAEPAQRKIIM 1021
Query: 305 TKLQQHLAALRVMKYGSNV 323
K++ H+ LR YG ++
Sbjct: 1022 HKIRPHITTLRKYTYGKHI 1040
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2
Length = 1189
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 141/320 (44%), Gaps = 20/320 (6%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIE-SCNE 72
+ +QDQ GS+++Q L + +F + ++LM +G +V KF E +E
Sbjct: 854 IMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSHE 913
Query: 73 SQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMM 132
+LAL + + LA + +G ++K ++ + ++ ++ L +
Sbjct: 914 QKLALAE---RIRGHVLSLA-LQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVK 969
Query: 133 TKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQIL 192
+ G+ V+ +C+E FI A L+ H GC + +++ + IL
Sbjct: 970 DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPIL 1029
Query: 193 HLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCL 252
+ + L + + GNYV+QHVL P I +RG+ + LS K S VV+KC+
Sbjct: 1030 EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCV 1089
Query: 253 KYQNAVHY--IIEELLNSDQILQVA-----NDKYGNYVIQTALAETMRQDRLSVHQRLVT 305
+ + +I+E+ + A D+Y NYV+Q + D QR +
Sbjct: 1090 THASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMI------DVAEPGQRKIV 1143
Query: 306 --KLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1144 MHKIRPHIATLRKYTYGKHI 1163
Score = 35.0 bits (79), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 14/262 (5%)
Query: 2 QTIAFEHCTNHDLFSLAQDQEGSQYLQENLS--SGDSRILDKLFWVVSGFTFELMSGQYG 59
Q +A + SLA G + +Q+ L D ++++++ + G + + Q G
Sbjct: 914 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNG 973
Query: 60 RFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHV 119
V K IE L II F+ Q+F L S +G ++++++ LP +
Sbjct: 974 NHVVQKCIECVQPQSLQFII--DAFKGQVFAL-STHPYGCRVIQRILEHC--LPDQTLPI 1028
Query: 120 MSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNF 179
+ L + + L+ + G+ VI LE I + L L+ H+ +
Sbjct: 1029 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 1088
Query: 180 IDNMKGSRRKQILHLI-SVNAA------SLSRHRSGNYVVQHVLSLEDPFLIDAICFALR 232
+ + + R ++ + ++N ++ + + NYVVQ ++ + +P + +R
Sbjct: 1089 VTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIR 1148
Query: 233 GHYVDLSLTKCGSFVVQKCLKY 254
H L G ++ K KY
Sbjct: 1149 PHIATLRKYTYGKHILAKLEKY 1170
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1
Length = 1189
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 142/322 (44%), Gaps = 24/322 (7%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 854 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 913
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMM- 132
Q + +I L ++ +G ++K ++ + PP + ++ L ++
Sbjct: 914 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFI---PPDQQVINEMVRELDGHVLKC 967
Query: 133 --TKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQ 190
+ G+ V+ +C+E FI A L+ H GC + +++ +
Sbjct: 968 VKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLP 1027
Query: 191 ILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQK 250
IL + + L + + GNYV+QHVL P I +RG+ + LS K S VV+K
Sbjct: 1028 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 1087
Query: 251 CLKYQNAVH--YIIEELLNSDQILQVA-----NDKYGNYVIQTAL--AETMRQDRLSVHQ 301
C+ + + +I+E+ + A D+Y NYV+Q + AE Q ++ +H
Sbjct: 1088 CVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPA-QRKIVMH- 1145
Query: 302 RLVTKLQQHLAALRVMKYGSNV 323
K++ H+A LR YG ++
Sbjct: 1146 ----KIRPHIATLRKYTYGKHI 1163
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 14/262 (5%)
Query: 2 QTIAFEHCTNHDLFSLAQDQEGSQYLQENLS--SGDSRILDKLFWVVSGFTFELMSGQYG 59
Q +A + SLA G + +Q+ L D ++++++ + G + + Q G
Sbjct: 914 QKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNG 973
Query: 60 RFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHV 119
V K IE L II F+ Q+F L S +G ++++++ LP +
Sbjct: 974 NHVVQKCIECVQPQSLQFII--DAFKGQVFAL-STHPYGCRVIQRILEHC--LPEQTLPI 1028
Query: 120 MSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNF 179
+ L + + L+ + G+ VI LE I + L L+ H+ +
Sbjct: 1029 LEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKC 1088
Query: 180 IDNMKGSRRKQILHLI-SVNAA------SLSRHRSGNYVVQHVLSLEDPFLIDAICFALR 232
+ + + R ++ + ++N ++ + + NYVVQ ++ + +P + +R
Sbjct: 1089 VTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIR 1148
Query: 233 GHYVDLSLTKCGSFVVQKCLKY 254
H L G ++ K KY
Sbjct: 1149 PHIATLRKYTYGKHILAKLEKY 1170
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1
Length = 1186
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 138/325 (42%), Gaps = 32/325 (9%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 853 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 912
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAH------LPPLLYHVMSALKRLF 127
Q + +I L ++ +G ++K ++ + + L HV+ +K
Sbjct: 913 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVK--- 966
Query: 128 KFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR 187
+ G+ V+ +C+E FI A L+ H GC + +++ +
Sbjct: 967 -----DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 1021
Query: 188 RKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFV 247
IL + + L + + GNYV+QHVL P I +RG+ + LS K S V
Sbjct: 1022 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 1081
Query: 248 VQKCLKYQNAVHY--IIEELLNSDQILQVA-----NDKYGNYVIQTALAETMRQDRLSVH 300
V+KC+ + + +I+E+ + A D+Y NYV+Q + D
Sbjct: 1082 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMI------DVAEPG 1135
Query: 301 QRLVT--KLQQHLAALRVMKYGSNV 323
QR + K++ H+A LR YG ++
Sbjct: 1136 QRKIVMHKIRPHIATLRKYTYGKHI 1160
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3
Length = 1186
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 138/325 (42%), Gaps = 32/325 (9%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNES 73
+ +QDQ GS+++Q L +F + ++LM +G +V KF E +
Sbjct: 853 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLE 912
Query: 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAH------LPPLLYHVMSALKRLF 127
Q + +I L ++ +G ++K ++ + + L HV+ +K
Sbjct: 913 QKLALAERIRGH---VLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVK--- 966
Query: 128 KFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSR 187
+ G+ V+ +C+E FI A L+ H GC + +++ +
Sbjct: 967 -----DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 1021
Query: 188 RKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFV 247
IL + + L + + GNYV+QHVL P I +RG+ + LS K S V
Sbjct: 1022 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 1081
Query: 248 VQKCLKYQNAVHY--IIEELLNSDQILQVA-----NDKYGNYVIQTALAETMRQDRLSVH 300
V+KC+ + + +I+E+ + A D+Y NYV+Q + D
Sbjct: 1082 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMI------DVAEPG 1135
Query: 301 QRLVT--KLQQHLAALRVMKYGSNV 323
QR + K++ H+A LR YG ++
Sbjct: 1136 QRKIVMHKIRPHIATLRKYTYGKHI 1160
>sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=4 SV=1
Length = 780
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 132/278 (47%), Gaps = 14/278 (5%)
Query: 14 LFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGK-FIESCNE 72
L ++ +DQ G +YLQ+ L F + +LM +G ++ K F+ + E
Sbjct: 467 LSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYASRE 526
Query: 73 SQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVA---HLPPLLYHVMSALKRLFKF 129
+L+++ + + + S + +G+ S++ +I + + LL ++ +L L
Sbjct: 527 QKLSMLN---GIGEGIVDICS-NLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTL--- 579
Query: 130 LMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRK 189
G+ V+ +C+ K + ++ + E+ + LA + GC L +D G ++
Sbjct: 580 -ACDNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQE 638
Query: 190 QILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQ 249
++++ I + L ++ GNY+VQHVL L + I G+ LSL K S ++
Sbjct: 639 RLVNSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIE 698
Query: 250 KCLKYQNAV--HYIIEELLNSDQILQVANDKYGNYVIQ 285
+C++ + +++E L+ I Q+ +D Y NYV+Q
Sbjct: 699 QCIRTASPSTREQMLQEFLSFPNIEQLLDDCYANYVMQ 736
>sp|O74438|MCP2_SCHPO Meiotic coiled-coil protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mcp2 PE=4 SV=1
Length = 703
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 90/175 (51%), Gaps = 16/175 (9%)
Query: 166 LACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLID 225
+A E G + + N +N +++ + I + ++R + GN+VVQH++ +
Sbjct: 517 VAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLK 576
Query: 226 AICFALRGHYVDLSLTKCGSFVVQKCLKY--QNAVHYIIEELLNS------DQILQVAND 277
+ AL V+ S+ + S V++K +K +N + ++++ N+ ++ +A+D
Sbjct: 577 RVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITNARVDRTRQPLIDIASD 636
Query: 278 KYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHLAALRVMKYGSNVY----KWTT 328
+YGNY+IQ + ++ + + ++T +++H+ +LR KYG V KW +
Sbjct: 637 QYGNYLIQ----QIIQLGQPAEKNLVITHIKKHMVSLRGSKYGQKVAYLVEKWNS 687
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 93/211 (44%), Gaps = 16/211 (7%)
Query: 130 LMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRK 189
LM+ + G+ ++ +C E + + A L + L LA GC + IDN+ +
Sbjct: 405 LMLNRFGNFLVQRCFEHGTAPQIRQMGSAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKL 464
Query: 190 QILHLISVNAASLSRHRSGNYVVQHVLSL---EDPF-LIDAICFALRGHYVDLSLTKCGS 245
++ + + H +V Q + E P +++ + ALRG + ++++ + GS
Sbjct: 465 AMMDELFLTIDVTIMHHYACHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGS 524
Query: 246 FVVQKCLKYQNAVHYIIEELLNSDQIL----QVANDKYGNYVIQTALAETMRQDRLSVHQ 301
VVQ ++N V E + ++I+ +A ++GN+V+Q + +D +
Sbjct: 525 LVVQNM--FENCVEKDKRECI--EEIIFHLDGIARGQWGNWVVQHMVENGQGEDL----K 576
Query: 302 RLVTKLQQHLAALRVMKYGSNVYKWTTASHP 332
R++ L + ++ S V + S P
Sbjct: 577 RVIDALLNRAVEFSIDQFASKVIEKAIKSGP 607
>sp|Q10238|MPF1_SCHPO Meiotic PUF family protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mpf1 PE=4 SV=1
Length = 581
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 129/317 (40%), Gaps = 23/317 (7%)
Query: 20 DQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALII 79
DQ S LQ+ L + D L + F+ LM ++G F+ K E E+QL
Sbjct: 266 DQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEYSTEAQLQSFS 325
Query: 80 LKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSV 139
F + S+D FGS ++K +++ +++ L +M + V
Sbjct: 326 Y---FLKKHVKELSIDAFGSHVLQKSLEIYPER--FTNNLIEELIECLPATLMQRHSCHV 380
Query: 140 ILQCLEPSYNHKNDFIY----QAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLI 195
+ E D I+ + L ++ E G + + +N K ++ L I
Sbjct: 381 WQKFFETRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEI 440
Query: 196 SVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQ 255
N + + GN+V+QH++ I +L S + S VV++ L+
Sbjct: 441 INNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVC 500
Query: 256 NAVHY--IIEELLNSDQIL------QVANDKYGNYVIQTAL-AETMRQDRLSVHQRLVTK 306
+ + ++E+ L ++A+++YGNY++Q L T Q L +
Sbjct: 501 HVTFFDRYVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINL-----MAEH 555
Query: 307 LQQHLAALRVMKYGSNV 323
L++H+ +LR KYG +
Sbjct: 556 LKKHMVSLRGHKYGQRI 572
>sp|Q07807|PUF3_YEAST mRNA-binding protein PUF3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF3 PE=1 SV=1
Length = 879
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 185 GSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCG 244
S ++ I + I +A LS GNYV+Q + + +G+ LSL
Sbjct: 565 ASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYA 624
Query: 245 SFVVQKCLKYQNAVHYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLV 304
V+QK L+Y ++ I L SD +LQ+ D+ GN+VIQ A+ ET+ ++L ++
Sbjct: 625 CRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAI-ETIPIEKLPF---IL 680
Query: 305 TKLQQHLAALRVMKYG 320
+ L H+ L YG
Sbjct: 681 SSLTGHIYHLSTHSYG 696
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 131/289 (45%), Gaps = 30/289 (10%)
Query: 19 QDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALI 78
+DQ GS+++Q L++ + + +F + EL + +G +V KF E ++ Q +
Sbjct: 548 KDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTL 607
Query: 79 ILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKP--G 136
+ + F+ + L S+ + ++K ++ + + L+ L M K G
Sbjct: 608 VDQ--FKGNMKQL-SLQMYACRVIQKALEYIDSN----QRIELVLELSDSVLQMIKDQNG 660
Query: 137 SSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLIS 196
+ VI + +E K FI + H +L+ H GC + ++ ++ IL+ +
Sbjct: 661 NHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELK 720
Query: 197 VNAASLSRHRSGNYVVQHVLSLEDPF----LID---AICFALRGHYVDLSLTKCGSFVVQ 249
L + + GNYV+Q+VL +D F ++D I + + V+ S K S VV+
Sbjct: 721 DFIPYLIQDQYGNYVIQYVLQ-QDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVE 779
Query: 250 KCLKY--QNAVHYIIEELLNSDQ-----------ILQVANDKYGNYVIQ 285
K + Y +N II ++L D+ ++ + D++ NYVIQ
Sbjct: 780 KSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQ 828
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 14/128 (10%)
Query: 204 RHRSGNYVVQ---HVLSLED-PFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNAVH 259
+ ++GN+V+Q + +E PF++ + L GH LS G V+Q+ L++ ++
Sbjct: 656 KDQNGNHVIQKAIETIPIEKLPFILSS----LTGHIYHLSTHSYGCRVIQRLLEFGSSED 711
Query: 260 YIIEELLNS--DQILQVANDKYGNYVIQTALAET--MRQDRLSVHQRLVTKLQQHLAALR 315
E +LN D I + D+YGNYVIQ L + ++ + + Q ++ + ++
Sbjct: 712 Q--ESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYS 769
Query: 316 VMKYGSNV 323
K+ SNV
Sbjct: 770 KHKFASNV 777
>sp|Q9LNI2|PUM22_ARATH Putative pumilio homolog 22 OS=Arabidopsis thaliana GN=APUM22 PE=3
SV=1
Length = 361
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 190 QILHLISVNAASLSRHRS-GNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVV 248
QIL LI V+A L++ GN QH ++L I L+ HY++LS K GS +V
Sbjct: 203 QILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSHYIELSFLKHGSKIV 262
Query: 249 QKCLKYQNAVHYIIEELL-----NSDQILQVANDKYGNYVIQT--ALAETMRQDRLSVHQ 301
+ + + ++ ++ ++ + D ++++A D+YGN +++ ALA+ ++D
Sbjct: 263 EMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGNNILKKFLALAKEHKEDFFG--- 319
Query: 302 RLVTKLQQHLAALR 315
LV KL L +LR
Sbjct: 320 DLVDKLNPLLDSLR 333
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%)
Query: 131 MMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQ 190
M + G + Q L H H L L+ + GC+ L I + +
Sbjct: 1 MTHERGYDLASQVLNICNVHHKKLFCHITYRHLLVLSSDDNGCVILKKVITIADDFLKDE 60
Query: 191 ILHLISVNAASLSRHRSGNYVVQHVLSLE 219
L LI+ +A SLS H G ++QHVL L+
Sbjct: 61 FLDLIAQHAHSLSMHDLGISLIQHVLELD 89
>sp|P97546|NPTN_RAT Neuroplastin OS=Rattus norvegicus GN=Nptn PE=1 SV=2
Length = 393
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 51 FELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVA 110
FE +S GRF I N ++L ++ L+IT + + + GS+SV +++V +
Sbjct: 278 FEEISNSSGRFFI---INKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRS 334
Query: 111 HLPPL 115
HL PL
Sbjct: 335 HLAPL 339
>sp|P97300|NPTN_MOUSE Neuroplastin OS=Mus musculus GN=Nptn PE=1 SV=3
Length = 397
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 51 FELMSGQYGRFVFGKFIESC-NESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVV 109
FE +S GRF FI + N ++L+++ L+IT + + + GS+SV +++V
Sbjct: 278 FEEISNSSGRF----FITNKENYTELSIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 333
Query: 110 AHLPPL 115
+HL PL
Sbjct: 334 SHLAPL 339
>sp|Q9C552|PUM23_ARATH Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1
Length = 753
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 231 LRGHYVDLSLTKCGSFVVQKCLKYQNAV--HYIIEELLNSDQILQVANDKYGNYVIQ 285
LRGH+ +LSL GSF V+KC N I ELL D + ++ K G Y+++
Sbjct: 565 LRGHFGELSLHTSGSFTVEKCFDACNLTLREAIASELL--DVKVDLSKTKQGPYLLR 619
>sp|Q9FGE7|PUM26_ARATH Pumilio homolog 26 OS=Arabidopsis thaliana GN=APUM26 PE=2 SV=1
Length = 187
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 190 QILHLISVNAASLSRHR-SGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVV 248
IL I NA L+R+ G +V+ +++ DP I L HYV+LS + GS +V
Sbjct: 114 DILRRIGNNALYLTRNPLRGICLVEKAINVRDPDCTVFIALKLHSHYVELSFEELGSNIV 173
Query: 249 QKCL 252
+K L
Sbjct: 174 EKLL 177
>sp|Q12221|PUF2_YEAST mRNA-binding protein PUF2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF2 PE=1 SV=1
Length = 1075
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 208 GNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNAVHYIIEELLN 267
GN V+Q + + D + + + + K G++V QK +K N I L+
Sbjct: 590 GNTVIQKLFENSSNIIRDIMLRKCNKYLTSMGVHKNGTWVCQKIIKMANTPRQI--NLVT 647
Query: 268 S---DQILQVANDKYGNYVIQTAL 288
S D + ND++GNYVIQ L
Sbjct: 648 SGVSDYCTPLFNDQFGNYVIQGIL 671
>sp|Q9P789|YN8E_SCHPO Pumilio domain-containing protein P35G2.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP35G2.14 PE=1 SV=2
Length = 1065
Score = 35.0 bits (79), Expect = 0.76, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 188 RKQILHLISVNAASLSRHRSGNYVVQHVLSLEDP-FLIDAICFALRGHYVDLSLTKCGSF 246
++ +L I+ + A + H++G + Q ++ + + I L+ + L + G++
Sbjct: 803 KEMMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIAKHLQPYIPLLFADQFGNY 862
Query: 247 VVQKCLKYQNAVH-YIIEELLNSDQILQVANDKYGNYVIQTAL 288
VVQ CLK+ ++ ++ E +LN Q +A +YG+ ++ L
Sbjct: 863 VVQTCLKFGAPMNDFVFEAILN--QFWVIAQSRYGSRAVRACL 903
>sp|O61345|PEN_DROME Protein penguin OS=Drosophila melanogaster GN=pen PE=2 SV=1
Length = 737
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 116 LYHVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQG--- 172
L ++A L ++ TK GS + C S I + EH L +A HE G
Sbjct: 346 LEETVTAFAALVPHMLSTKEGSEAAVICFYKSTPKNRRAIIKNIKEHLLKIANHEHGHVF 405
Query: 173 CINLNNFIDNMKGSRRKQILHL 194
I+L N +D+ K +++ HL
Sbjct: 406 LISLLNALDDTKATKKAIYDHL 427
>sp|P39016|MPT5_YEAST Suppressor protein MPT5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MPT5 PE=1 SV=2
Length = 859
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 207 SGNYVVQHVLSLEDP----FLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNAVHYII 262
+GN+V+Q + P F+IDAI + + + +S K G V+QK L +V +
Sbjct: 340 NGNHVIQKCIFKFSPSKFGFIIDAIV--EQNNIITISTHKHGCCVLQKLL----SVCTLQ 393
Query: 263 EELLNSDQILQ----VANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHLAALRVMK 318
+ S +I+Q + ND++GNY+IQ L +++ + L +L L L +K
Sbjct: 394 QIFKISVKIVQFLPGLINDQFGNYIIQFLL--DIKELDFYLLAELFNRLSNELCQLSCLK 451
Query: 319 YGSNV 323
+ SNV
Sbjct: 452 FSSNV 456
>sp|Q54IX3|PKS26_DICDI Probable polyketide synthase 26 OS=Dictyostelium discoideum GN=pks26
PE=3 SV=1
Length = 2531
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 178 NFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVD 237
+FI + SR K L LI L ++ G ++ + LS + + + C RG +D
Sbjct: 1984 DFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIID 2043
Query: 238 LSLT 241
LS+T
Sbjct: 2044 LSIT 2047
>sp|P63483|ALR2_STAAN Alanine racemase 2 OS=Staphylococcus aureus (strain N315) GN=alr2
PE=3 SV=1
Length = 361
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 89 FLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSY 148
F+ A +D F ++S+++ I++ P +M+A+ ++F ++ + + L L Y
Sbjct: 45 FIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNAV---YEFDLVREHQIHMTLPSLTYYY 101
Query: 149 NHKNDF 154
NHKND
Sbjct: 102 NHKNDL 107
>sp|P63482|ALR2_STAAM Alanine racemase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=alr2 PE=1 SV=1
Length = 361
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 89 FLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSY 148
F+ A +D F ++S+++ I++ P +M+A+ ++F ++ + + L L Y
Sbjct: 45 FIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNAV---YEFDLVREHQIHMTLPSLTYYY 101
Query: 149 NHKNDF 154
NHKND
Sbjct: 102 NHKNDL 107
>sp|Q5HG21|ALR2_STAAC Alanine racemase 2 OS=Staphylococcus aureus (strain COL) GN=alr2
PE=3 SV=1
Length = 361
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 89 FLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSY 148
F+ A +D F ++S+++ I++ P +M+A+ ++F ++ + + L L Y
Sbjct: 45 FIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNAV---YEFDLVREHQIHMTLPSLTYYY 101
Query: 149 NHKNDF 154
NHKND
Sbjct: 102 NHKNDL 107
>sp|Q9EZ08|ALR2_STAA8 Alanine racemase 2 OS=Staphylococcus aureus (strain NCTC 8325)
GN=alr2 PE=3 SV=2
Length = 361
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 89 FLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSY 148
F+ A +D F ++S+++ I++ P +M+A+ ++F ++ + + L L Y
Sbjct: 45 FIHAGIDTFSTTSLREAIQIRQLAPDATIFLMNAV---YEFDLVREHQIHMTLPSLTYYY 101
Query: 149 NHKNDF 154
NHKND
Sbjct: 102 NHKNDL 107
>sp|Q92347|NOP9_SCHPO Nucleolar protein 9 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nop9 PE=3 SV=1
Length = 655
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 208 GNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNAVHYIIEELLN 267
G+ V++ + L I + AL GHYV+L T GS+ +K L + A+ + + +
Sbjct: 110 GSKVLEKLFPLSTSRQIKSFFSALNGHYVELIQTTFGSYAFEKLLSHMAAILNLETQGVT 169
Query: 268 SDQ--ILQVAND 277
DQ +L+ N+
Sbjct: 170 EDQDDVLEGENE 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,432,339
Number of Sequences: 539616
Number of extensions: 4214748
Number of successful extensions: 12923
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 12581
Number of HSP's gapped (non-prelim): 128
length of query: 335
length of database: 191,569,459
effective HSP length: 118
effective length of query: 217
effective length of database: 127,894,771
effective search space: 27753165307
effective search space used: 27753165307
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)