Query 035754
Match_columns 335
No_of_seqs 149 out of 1496
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 09:57:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 5.8E-65 2E-69 464.1 27.1 319 3-331 18-343 (351)
2 3bwt_A Protein PUF4; pumilio, 100.0 2.2E-63 7.5E-68 451.3 24.4 320 2-327 4-331 (333)
3 3k49_A MRNA-binding protein PU 100.0 8.8E-63 3E-67 452.6 23.8 317 3-329 23-359 (369)
4 3k62_A FEM-3 mRNA-binding fact 100.0 8.8E-61 3E-65 441.6 24.3 320 6-330 22-402 (412)
5 3v71_A PUF (pumilio/FBF) domai 100.0 6.5E-60 2.2E-64 433.3 24.8 322 4-330 11-381 (382)
6 3gvo_A Pumilio 2, pumilio homo 100.0 1.4E-45 4.7E-50 336.2 20.4 294 24-331 5-307 (351)
7 3k49_A MRNA-binding protein PU 100.0 4.2E-46 1.4E-50 341.9 16.9 299 22-331 3-324 (369)
8 3bwt_A Protein PUF4; pumilio, 100.0 8.1E-44 2.8E-48 322.7 21.8 277 41-330 6-294 (333)
9 3v71_A PUF (pumilio/FBF) domai 100.0 2.8E-42 9.7E-47 316.2 20.3 282 43-331 13-327 (382)
10 3k62_A FEM-3 mRNA-binding fact 100.0 2.4E-40 8.1E-45 305.4 23.4 276 47-330 28-346 (412)
11 3hjl_A Flagellar motor switch 86.7 13 0.00046 32.4 12.9 160 33-196 51-223 (329)
12 2ilr_A Protein FACE, fanconi a 54.2 96 0.0033 26.0 14.2 183 61-256 38-229 (264)
13 3pkr_A FLIG, flagellar motor s 47.7 54 0.0018 27.8 7.1 121 137-258 103-229 (279)
14 4fhr_B Flagellar motor switch 45.5 91 0.0031 25.2 7.9 125 133-258 41-172 (216)
15 3u0r_A Apoptosis inhibitor 5; 42.5 2E+02 0.0068 26.6 10.3 36 219-254 233-268 (507)
16 2xes_A Protein PAT1 homolog 1; 39.5 30 0.001 28.9 4.2 42 125-166 71-112 (248)
17 2di0_A Activating signal coint 35.9 35 0.0012 22.3 3.1 36 231-267 16-52 (71)
18 3hjl_A Flagellar motor switch 32.0 2.5E+02 0.0086 24.3 16.5 153 70-234 52-225 (329)
19 3b2a_A TON_1937, putative unch 28.5 2.4E+02 0.0083 23.4 7.7 21 270-291 193-213 (265)
20 2xes_A Protein PAT1 homolog 1; 27.8 57 0.0019 27.1 4.0 42 163-204 73-114 (248)
21 2fv2_A RCD1 required for cell 26.4 1.8E+02 0.006 24.4 6.6 13 29-41 128-140 (268)
22 4fhr_B Flagellar motor switch 24.8 2.7E+02 0.0093 22.4 8.3 84 26-113 7-100 (216)
23 2fv2_A RCD1 required for cell 23.9 3.2E+02 0.011 22.8 18.3 47 62-108 5-56 (268)
24 1k1a_A B-cell lymphoma 3-encod 23.5 2.6E+02 0.0089 21.7 8.4 96 18-121 4-100 (241)
25 2jpq_A UPF0352 protein VP2129; 22.6 1.8E+02 0.006 19.4 5.2 49 35-83 8-62 (83)
26 1wdy_A 2-5A-dependent ribonucl 22.0 3E+02 0.01 21.9 8.5 220 22-256 4-231 (285)
27 2juw_A UPF0352 protein SO_2176 21.1 1.9E+02 0.0064 19.2 5.2 49 35-83 8-62 (80)
28 2yvy_A MGTE, Mg2+ transporter 20.5 3.6E+02 0.012 22.1 8.4 20 28-47 13-32 (278)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=5.8e-65 Score=464.07 Aligned_cols=319 Identities=22% Similarity=0.367 Sum_probs=303.7
Q ss_pred ccccccccCcchhhhccCchhcHHHHHhhcCCCHHHHHHHHHHHHhhHHhhccCccchHHHHHHhhhcCHHHHHHHHHHH
Q 035754 3 TIAFEHCTNHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 82 (335)
Q Consensus 3 ~~~~~~~~~g~~~~la~~~~~s~~lq~~l~~~~~e~~~~i~~e~~~~~~~L~~~~~gs~v~q~ll~~~~~~~~~~i~~~l 82 (335)
+..++++. |+++++|+||+|||+||++|+.+++++++.|++++.+++.+||.|+|||||+|+++++++++++..|++.+
T Consensus 18 ~~~l~~~~-g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i 96 (351)
T 3gvo_A 18 NLQLRDLI-GHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRI 96 (351)
T ss_dssp TCCGGGGT-TCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CcCHHHHH-hHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHH
Confidence 34677877 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhhhhccccCcHHHHHHHhhhcCChhHHHHHHHHHHHhhhhhhcCCCccHHHHHHhhcCCcchhHHHHHHHHHh
Q 035754 83 TFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEH 162 (335)
Q Consensus 83 ~~~~~~~~~l~~~~~gs~vlq~ll~~~~~~~~~~~~i~~~l~~~~~~l~~d~~g~~vvq~~l~~~~~~~~~~l~~~~~~~ 162 (335)
. +++.+++.|+|||+|+|++++. +.++ +...+.+++.+++..|+.|++||||+|++++..+++.+..|++.+.++
T Consensus 97 ~---g~~~~l~~~~~G~rvvQk~le~-~~~~-~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~ 171 (351)
T 3gvo_A 97 R---GHVLPLALQMYGCRVIQKALES-ISSD-QQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQ 171 (351)
T ss_dssp T---TCHHHHHTSTTHHHHHHHHHHH-SCHH-HHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTT
T ss_pred H---hhHHHHhhCHHhHHHHHHHHHh-CCHH-HHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999 6554 455666779999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCccHHHHHHHhccChHHHHHHHHHHHHhHHhhhcCCChhHHHHHhhccCChhhHHHHHHHHHHhHHHhccCc
Q 035754 163 CLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTK 242 (335)
Q Consensus 163 ~~~l~~~~~g~~vlq~~l~~~~~~~~~~l~~~l~~~~~~l~~d~~G~~viq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~ 242 (335)
+..++.|++||+|+|++++.++++++..+++++.+++..|++|+|||||+|++|+.++|+.+..|++.+.+++..|++++
T Consensus 172 ~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k 251 (351)
T 3gvo_A 172 VFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHK 251 (351)
T ss_dssp HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTST
T ss_pred HHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhcCCcH--HHHHHHHhCh-----hhHHhhhcCcchhHHHHHHHhhccCcCcHHHHHHHHHHHHHHHHhhh
Q 035754 243 CGSFVVQKCLKYQNAV--HYIIEELLNS-----DQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHLAALR 315 (335)
Q Consensus 243 ~gS~vve~~l~~~~~~--~~i~~~l~~~-----~~~~~l~~~~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~~~~~~L~ 315 (335)
|||+|+|+|++.+++. +.|+++++.. +.+..|++|+|||||||++|+.+++ .+++.+++.++|++..|+
T Consensus 252 ~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~----~~r~~i~~~i~~~~~~L~ 327 (351)
T 3gvo_A 252 FASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEP----AQRKIIMHKIRPHITTLR 327 (351)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCH----HHHHHHHHHHGGGHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHh
Confidence 9999999999999988 8899999861 2799999999999999999999988 899999999999999999
Q ss_pred cCCChHHHHHHHHhhC
Q 035754 316 VMKYGSNVYKWTTASH 331 (335)
Q Consensus 316 ~~~~gs~v~~~l~~~~ 331 (335)
.++||++|++++.+.-
T Consensus 328 ~~~~g~~i~~kl~~~~ 343 (351)
T 3gvo_A 328 KYTYGKHILAKLEKYY 343 (351)
T ss_dssp TSTTTHHHHHHHHHHT
T ss_pred cCCchHHHHHHHHHHH
Confidence 9999999999998764
No 2
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=2.2e-63 Score=451.27 Aligned_cols=320 Identities=26% Similarity=0.393 Sum_probs=301.3
Q ss_pred cccccccccCcchhhhccCchhcHHHHHhhcCCCHHHHHHHHHHHHhhHHhhccCccchHHHHHHhhhcCHHHHHHHHHH
Q 035754 2 QTIAFEHCTNHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILK 81 (335)
Q Consensus 2 ~~~~~~~~~~g~~~~la~~~~~s~~lq~~l~~~~~e~~~~i~~e~~~~~~~L~~~~~gs~v~q~ll~~~~~~~~~~i~~~ 81 (335)
.+.+++++. |+++++|.||+|||++|++|+.+++++++.|++|+.+++.+|+.|+|||||+|+++++++++++..|++.
T Consensus 4 ~~~~l~~~~-g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~ 82 (333)
T 3bwt_A 4 ADAVLDQYI-GSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKI 82 (333)
T ss_dssp TTCCGGGTT-TCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ccCcHHHHH-HHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHH
Confidence 577899998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccchhhhhhccccCcHHHHHHHhhhcCChhHHHHHHHHHHHhhhhhhcCCCccHHHHHHhhcCCcchhHHHHHHHHH
Q 035754 82 ITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALE 161 (335)
Q Consensus 82 l~~~~~~~~~l~~~~~gs~vlq~ll~~~~~~~~~~~~i~~~l~~~~~~l~~d~~g~~vvq~~l~~~~~~~~~~l~~~~~~ 161 (335)
+. +++.+++.|+|||||+|++++. ++++++...+.+++.+++..|+.|++||||+|++++..+++.++.+++.+.+
T Consensus 83 ~~---~~~~~l~~~~~G~rviQ~~l~~-~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~ 158 (333)
T 3bwt_A 83 SS---PHFVEISLNPHGTRALQKLIEC-IKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISD 158 (333)
T ss_dssp HG---GGHHHHHHSTTHHHHHHHHHHH-CCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HH---hHHHHHHhcccccHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999999 8888888989999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCCccHHHHHHHhccChHHHHHHHHHHHHhHHhhhcCCChhHHHHHhhccCChh----hHHHHHHHHHHhHHH
Q 035754 162 HCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPF----LIDAICFALRGHYVD 237 (335)
Q Consensus 162 ~~~~l~~~~~g~~vlq~~l~~~~~~~~~~l~~~l~~~~~~l~~d~~G~~viq~~l~~~~~~----~~~~i~~~l~~~~~~ 237 (335)
++..++.|++||+|+|++++.++++++..+++++.+++..|++|+|||||+|++++.++++ .++.+++.+.+++.+
T Consensus 159 ~~~~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~ 238 (333)
T 3bwt_A 159 SCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIE 238 (333)
T ss_dssp SHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHH
T ss_pred HHHHHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987664 368999999999999
Q ss_pred hccCcchhHHHHHHHhcCCcHHHHHHHHhC---hhhHHhhhcCcchhHHHHHHHhhccCcCcHHHHHHHHHHHHHHH-Hh
Q 035754 238 LSLTKCGSFVVQKCLKYQNAVHYIIEELLN---SDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQHL-AA 313 (335)
Q Consensus 238 l~~~~~gS~vve~~l~~~~~~~~i~~~l~~---~~~~~~l~~~~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~~~~-~~ 313 (335)
|+.++|||+|+++|++.++..+.++.+++. ++++..|++|+|||||||++|+.++++ +...++.+++++.|++ .+
T Consensus 239 Ls~~k~gs~Vvek~l~~~~~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~~-~~~~~~~l~~~l~p~l~~~ 317 (333)
T 3bwt_A 239 LSIHKFGSNVIEKILKTAIVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQ-NDYLYKRLSEIVAPLLVGP 317 (333)
T ss_dssp HHTSTTHHHHHHHHHTSHHHHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHHH-CHHHHHHHHHHHGGGCCGG
T ss_pred HHcccHHHHHHHHHHcccchhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccCc-cHHHHHHHHHHHHHhchhh
Confidence 999999999999999976544778888875 358999999999999999999998762 1257899999999998 89
Q ss_pred hhcCCChHHHHHHH
Q 035754 314 LRVMKYGSNVYKWT 327 (335)
Q Consensus 314 L~~~~~gs~v~~~l 327 (335)
|+.++||++|+.++
T Consensus 318 lr~~~~G~~i~~~l 331 (333)
T 3bwt_A 318 IRNTPHGKRIIGML 331 (333)
T ss_dssp GGGSHHHHHHHTTS
T ss_pred hcCCCCHHHHHHHh
Confidence 99999999999875
No 3
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=8.8e-63 Score=452.63 Aligned_cols=317 Identities=20% Similarity=0.282 Sum_probs=296.2
Q ss_pred ccccccccCcchhhhccCchhcHHHHHhhcCCCHHHHHHHHHHHHhhHHhhccCccchHHHHHHhhhcCHHHHHHHHHHH
Q 035754 3 TIAFEHCTNHDLFSLAQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKI 82 (335)
Q Consensus 3 ~~~~~~~~~g~~~~la~~~~~s~~lq~~l~~~~~e~~~~i~~e~~~~~~~L~~~~~gs~v~q~ll~~~~~~~~~~i~~~l 82 (335)
+..++++. |+++++|+||+|||++|++|+.+++++++.|++|+.|++.+|+.|+|||||+|+++++++++++..|++.+
T Consensus 23 ~~~l~~i~-g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~ 101 (369)
T 3k49_A 23 NMSLKDIF-GHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQF 101 (369)
T ss_dssp CCCGGGGT-TCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ceeHHHHH-HHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHH
Confidence 45788998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhhhhccccCcHHHHHHHhhhcCChhHHHHHHHHHHHhhhhhhcCCCccHHHHHHhhcCCcchhHHHHHHHHHh
Q 035754 83 TFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEH 162 (335)
Q Consensus 83 ~~~~~~~~~l~~~~~gs~vlq~ll~~~~~~~~~~~~i~~~l~~~~~~l~~d~~g~~vvq~~l~~~~~~~~~~l~~~~~~~ 162 (335)
. +++..++.|+|||+|+|++++. +. +++...+.+++.+++..|+.|++||||+|++++.++++.++.|++.+.++
T Consensus 102 ~---g~~~~L~~~~~G~rVlQk~le~-~~-~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~ 176 (369)
T 3k49_A 102 K---GNMKQLSLQMYACRVIQKALEY-ID-SNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGH 176 (369)
T ss_dssp T---TCHHHHHHSTTHHHHHHHHHHH-SC-HHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTT
T ss_pred h---hhHHHHhcChhhHHHHHHHHHh-CC-HHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9 9999999999999999999998 54 55566666779999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCccHHHHHHHhccChHHHHHHHHHHHHhHHhhhcCCChhHHHHHhhccCChhh------HHHHHHHHHHhHH
Q 035754 163 CLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFL------IDAICFALRGHYV 236 (335)
Q Consensus 163 ~~~l~~~~~g~~vlq~~l~~~~~~~~~~l~~~l~~~~~~l~~d~~G~~viq~~l~~~~~~~------~~~i~~~l~~~~~ 236 (335)
+..++.|++||+|+|++++.++++++..+++++.+++..|++|+|||||+|++++.+++.. +..+++.+.+++.
T Consensus 177 ~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~ 256 (369)
T 3k49_A 177 IYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVV 256 (369)
T ss_dssp HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998764 6789999999999
Q ss_pred HhccCcchhHHHHHHHhcCCcH--HHHHHHHhCh-----------hhHHhhhcCcchhHHHHHHHhhccCcCcHHHHHHH
Q 035754 237 DLSLTKCGSFVVQKCLKYQNAV--HYIIEELLNS-----------DQILQVANDKYGNYVIQTALAETMRQDRLSVHQRL 303 (335)
Q Consensus 237 ~l~~~~~gS~vve~~l~~~~~~--~~i~~~l~~~-----------~~~~~l~~~~~g~~Viq~~l~~~~~~~~~~~~~~l 303 (335)
+|++++|||+|+|+|++.+++. +.|+++++.. +.+..|++|+|||||||++|+.+++ .+++.+
T Consensus 257 ~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~----~~~~~l 332 (369)
T 3k49_A 257 EYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEG----EGKKLI 332 (369)
T ss_dssp HHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCH----HHHHHH
T ss_pred HHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCH----HHHHHH
Confidence 9999999999999999999887 8899999862 2578999999999999999999998 899999
Q ss_pred HHHHHHHHHhhhc-CCChHHHHHHHHh
Q 035754 304 VTKLQQHLAALRV-MKYGSNVYKWTTA 329 (335)
Q Consensus 304 ~~~l~~~~~~L~~-~~~gs~v~~~l~~ 329 (335)
++.++|++..|+. ++||++++..+.+
T Consensus 333 ~~~i~p~l~~L~~~~~~G~~~~~~~e~ 359 (369)
T 3k49_A 333 VIAIRAYLDKLNKSNSLGNRHLASVEK 359 (369)
T ss_dssp HHHHHHHHHHHHHCC--CCCCCHHHHH
T ss_pred HHHHHHHHHHHhccccCcchHHHHHHH
Confidence 9999999999986 5999998877654
No 4
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=8.8e-61 Score=441.62 Aligned_cols=320 Identities=18% Similarity=0.272 Sum_probs=286.9
Q ss_pred ccccc-CcchhhhccCchhcHHHHHhhcCC-CHHHHHHHHHHHHhh---HHhhccCccchHHHHHHhhhcCH-------H
Q 035754 6 FEHCT-NHDLFSLAQDQEGSQYLQENLSSG-DSRILDKLFWVVSGF---TFELMSGQYGRFVFGKFIESCNE-------S 73 (335)
Q Consensus 6 ~~~~~-~g~~~~la~~~~~s~~lq~~l~~~-~~e~~~~i~~e~~~~---~~~L~~~~~gs~v~q~ll~~~~~-------~ 73 (335)
+..+. +|+++++|+||+|||+||+.|+.+ ++++++.||+|+.++ +.+||.|+|||||+|+++++|++ +
T Consensus 22 L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~ 101 (412)
T 3k62_A 22 LSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTK 101 (412)
T ss_dssp HHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHH
T ss_pred HHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHH
Confidence 44443 799999999999999999999997 899999999999875 89999999999999999999999 8
Q ss_pred HHHHHHHHHhcccchhhhhhccccCcHHHHHHHhhhcCChhHHHHHHHHH--HHhhhhhhcCCCccHHHHHHhhcCCcch
Q 035754 74 QLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSAL--KRLFKFLMMTKPGSSVILQCLEPSYNHK 151 (335)
Q Consensus 74 ~~~~i~~~l~~~~~~~~~l~~~~~gs~vlq~ll~~~~~~~~~~~~i~~~l--~~~~~~l~~d~~g~~vvq~~l~~~~~~~ 151 (335)
++..|++.+. +++.+++.|++||||+|++++. +. +++...+.+++ .+++..|++|++||||+|++++.++++.
T Consensus 102 q~~~i~~~l~---g~v~~L~~~~~GsrvvQk~le~-~~-~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~ 176 (412)
T 3k62_A 102 RQEKLKNFIS---SQMTDMCLDKFACRVIQSSLQN-MD-LSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKN 176 (412)
T ss_dssp HHHHHHHHHH---HTHHHHHHSTTHHHHHHHHHHH-SC-HHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHH---HHHHHHHcChhhhHHHHHHHHh-CC-HHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHH
Confidence 9999999999 9999999999999999999998 54 55666777778 6899999999999999999999999999
Q ss_pred hHHHHHHHH--HhHHHhhcCCCccHHHHHHHhccCh------------HHHH----HHHHHHHHhHHhhhcCCChhHHHH
Q 035754 152 NDFIYQAAL--EHCLYLACHEQGCINLNNFIDNMKG------------SRRK----QILHLISVNAASLSRHRSGNYVVQ 213 (335)
Q Consensus 152 ~~~l~~~~~--~~~~~l~~~~~g~~vlq~~l~~~~~------------~~~~----~l~~~l~~~~~~l~~d~~G~~viq 213 (335)
++.|++.+. +++..+++|++||+|+|++++.+++ +++. .+++++..++..|+.|+|||||+|
T Consensus 177 ~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ 256 (412)
T 3k62_A 177 WEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQ 256 (412)
T ss_dssp HHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHH
T ss_pred HHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHH
Confidence 999999998 6999999999999999999999863 3443 466778889999999999999999
Q ss_pred HhhccCChh-hHHHHHH-HHHHhHHHhccCcchhHHHHHHHhcCCcH--HHHHHHHhC---------hhhHHhhhcCcch
Q 035754 214 HVLSLEDPF-LIDAICF-ALRGHYVDLSLTKCGSFVVQKCLKYQNAV--HYIIEELLN---------SDQILQVANDKYG 280 (335)
Q Consensus 214 ~~l~~~~~~-~~~~i~~-~l~~~~~~l~~~~~gS~vve~~l~~~~~~--~~i~~~l~~---------~~~~~~l~~~~~g 280 (335)
++|+++.++ .+..+++ .+.+++.+||++||||+|||+|++.+++. +.|++++++ ++.+..|++|+||
T Consensus 257 ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyG 336 (412)
T 3k62_A 257 HIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFG 336 (412)
T ss_dssp HHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTH
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhccCCccccchHHHHHhcCCch
Confidence 999999876 5788887 69999999999999999999999999887 789999884 2368999999999
Q ss_pred hHHHHHHHhhccCc---C-------------cHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHhh
Q 035754 281 NYVIQTALAETMRQ---D-------------RLSVHQRLVTKLQQHLAALRVMKYGSNVYKWTTAS 330 (335)
Q Consensus 281 ~~Viq~~l~~~~~~---~-------------~~~~~~~l~~~l~~~~~~L~~~~~gs~v~~~l~~~ 330 (335)
|||||++|+.++++ + ...+++.|+.+++++...|...+||++|++++.+-
T Consensus 337 NYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~~Gk~i~~~l~~~ 402 (412)
T 3k62_A 337 NYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSSGKKMIETLANL 402 (412)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHh
Confidence 99999999998552 0 01357899999999999999999999999988653
No 5
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=6.5e-60 Score=433.27 Aligned_cols=322 Identities=19% Similarity=0.272 Sum_probs=284.9
Q ss_pred ccccccc-CcchhhhccCchhcHHHHHhhcCCCHH-HHHHHHHHHH---hhHHhhccCccchHHHHHHhhhcCHHHHHHH
Q 035754 4 IAFEHCT-NHDLFSLAQDQEGSQYLQENLSSGDSR-ILDKLFWVVS---GFTFELMSGQYGRFVFGKFIESCNESQLALI 78 (335)
Q Consensus 4 ~~~~~~~-~g~~~~la~~~~~s~~lq~~l~~~~~e-~~~~i~~e~~---~~~~~L~~~~~gs~v~q~ll~~~~~~~~~~i 78 (335)
+.+.++. +|+++++|.||+|||++|+.|+.++++ .++.||+++. +++.+||.|+|||||+|+++++|+++++..+
T Consensus 11 ~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~l 90 (382)
T 3v71_A 11 ISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQREL 90 (382)
T ss_dssp CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHH
T ss_pred CcHHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHH
Confidence 3455563 799999999999999999999998765 5789999996 6789999999999999999999999999998
Q ss_pred HHH-HhcccchhhhhhccccCcHHHHHHHhhhcCChhHHHHHHHHHHH-hhhhhhcCCCccHHHHHHhhcCCcchhHHHH
Q 035754 79 ILK-ITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKR-LFKFLMMTKPGSSVILQCLEPSYNHKNDFIY 156 (335)
Q Consensus 79 ~~~-l~~~~~~~~~l~~~~~gs~vlq~ll~~~~~~~~~~~~i~~~l~~-~~~~l~~d~~g~~vvq~~l~~~~~~~~~~l~ 156 (335)
+.. +. +++..++.|+|||||+|++++. +..+++. .+.+++.+ ++..++.|++||||+|++++..+++.++.|+
T Consensus 91 i~~~l~---g~v~~Ls~~~~G~rvvQk~ie~-~~~~~~~-~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii 165 (382)
T 3v71_A 91 LRQMID---GGLLAMCKDKFACRVVQLALQK-FDHSNVF-QLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFV 165 (382)
T ss_dssp HHHHHH---TCHHHHHTSTTHHHHHHHHHHH-SCHHHHH-HHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHH
T ss_pred HHHHhc---chHHHHHhCccchHHHHHHHHH-CCHHHHH-HHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHH
Confidence 876 68 9999999999999999999999 6655544 45566887 8999999999999999999999999999999
Q ss_pred HHHH--HhHHHhhcCCCccHHHHHHHhccChHH-----------HHHHHHHHHHhHHhhhcCCChhHHHHHhhccCCh--
Q 035754 157 QAAL--EHCLYLACHEQGCINLNNFIDNMKGSR-----------RKQILHLISVNAASLSRHRSGNYVVQHVLSLEDP-- 221 (335)
Q Consensus 157 ~~~~--~~~~~l~~~~~g~~vlq~~l~~~~~~~-----------~~~l~~~l~~~~~~l~~d~~G~~viq~~l~~~~~-- 221 (335)
+.+. +++..+++|++||+|+|++++.+++++ ...++.++.++...|+.|+|||||||++|+.+++
T Consensus 166 ~~~~~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e 245 (382)
T 3v71_A 166 HFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIME 245 (382)
T ss_dssp HHHHSTTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHH
T ss_pred HHHhcccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcH
Confidence 9997 689999999999999999999986542 2346677888899999999999999999999864
Q ss_pred hhHHHHHH-HHHHhHHHhccCcchhHHHHHHHhcCCcH--HHHHHHHhC---------hhhHHhhhcCcchhHHHHHHHh
Q 035754 222 FLIDAICF-ALRGHYVDLSLTKCGSFVVQKCLKYQNAV--HYIIEELLN---------SDQILQVANDKYGNYVIQTALA 289 (335)
Q Consensus 222 ~~~~~i~~-~l~~~~~~l~~~~~gS~vve~~l~~~~~~--~~i~~~l~~---------~~~~~~l~~~~~g~~Viq~~l~ 289 (335)
+.+..+++ .+.+++.+||++||||+|+|+|++.+++. +.|++++++ ++.+..|++|+|||||||++|+
T Consensus 246 ~~r~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~ 325 (382)
T 3v71_A 246 MYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMIS 325 (382)
T ss_dssp HHHHHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHH
Confidence 46889997 59999999999999999999999999988 889999985 2489999999999999999999
Q ss_pred hccCcC---------------cHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHhh
Q 035754 290 ETMRQD---------------RLSVHQRLVTKLQQHLAALRVMKYGSNVYKWTTAS 330 (335)
Q Consensus 290 ~~~~~~---------------~~~~~~~l~~~l~~~~~~L~~~~~gs~v~~~l~~~ 330 (335)
.+++.. ...++++|+.++++++..|+.++||++|++++.++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~~ 381 (382)
T 3v71_A 326 ICTAALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMRH 381 (382)
T ss_dssp HHHHHCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHC
T ss_pred HcccccccchhcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHhc
Confidence 987510 01356899999999999999999999999999875
No 6
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=1.4e-45 Score=336.22 Aligned_cols=294 Identities=17% Similarity=0.186 Sum_probs=273.4
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHhhHHhhccCccchHHHHHHhhhcCHHHHHHHHHHHhcccchhhhhhccccCcHHHH
Q 035754 24 SQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVK 103 (335)
Q Consensus 24 s~~lq~~l~~~~~e~~~~i~~e~~~~~~~L~~~~~gs~v~q~ll~~~~~~~~~~i~~~l~~~~~~~~~l~~~~~gs~vlq 103 (335)
|.+++..=.... ....++++.|++.+++.|++||+++|++++.++++++..|+.++. +++.+|+.|+||++|+|
T Consensus 5 ~~l~e~~r~~~~---~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~---~~~~~L~~d~~gn~vvQ 78 (351)
T 3gvo_A 5 SRLLEDFRNNRF---PNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEIL---QAAYQLMTDVFGNYVIQ 78 (351)
T ss_dssp CHHHHHHHTTCC---TTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHG---GGHHHHHTSTTHHHHHH
T ss_pred cHHHHHHhCCCC---CCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHH---HhHHHHHhChhhhHHHH
Confidence 445554444322 223467889999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHhhhcCChhHHHHHHHHHHHhhhhhhcCCCccHHHHHHhhcCCcchhHHHHHHHHHhHHHhhcCCCccHHHHHHHhcc
Q 035754 104 KLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDNM 183 (335)
Q Consensus 104 ~ll~~~~~~~~~~~~i~~~l~~~~~~l~~d~~g~~vvq~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~g~~vlq~~l~~~ 183 (335)
++++. +++++...+.+.+.+++.+++.|++|++|+|++++..+++++..+++.+.+++..++.|++|++|+|++++.+
T Consensus 79 klle~--~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~ 156 (351)
T 3gvo_A 79 KFFEF--GSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECV 156 (351)
T ss_dssp HHHHH--CCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHS
T ss_pred HHHhh--CCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhC
Confidence 99998 6788888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhHHhhhcCCChhHHHHHhhccCChhhHHHHHHHHHHhHHHhccCcchhHHHHHHHhcCCcH--HHH
Q 035754 184 KGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNAV--HYI 261 (335)
Q Consensus 184 ~~~~~~~l~~~l~~~~~~l~~d~~G~~viq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~gS~vve~~l~~~~~~--~~i 261 (335)
+++.+..+++.+.+++..++.+++|++|+|++++.++++.+..+++.+.+++..|+.|+||++|+|++++.+++. +.|
T Consensus 157 ~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i 236 (351)
T 3gvo_A 157 QPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKI 236 (351)
T ss_dssp CGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887 889
Q ss_pred HHHHhChhhHHhhhcCcchhHHHHHHHhhccCcCcHHHHHHHHHHHHH-------HHHhhhcCCChHHHHHHHHhhC
Q 035754 262 IEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQ-------HLAALRVMKYGSNVYKWTTASH 331 (335)
Q Consensus 262 ~~~l~~~~~~~~l~~~~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~~-------~~~~L~~~~~gs~v~~~l~~~~ 331 (335)
++.+.+ ++..|++|+||++|++++|+.+++ .+++.+++++.+ .+..|..++||.+|+++++...
T Consensus 237 ~~~l~~--~~~~Ls~~k~gs~Vvek~l~~~~~----~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~ 307 (351)
T 3gvo_A 237 VSEIRG--KVLALSQHKFASNVVEKCVTHASR----AERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMA 307 (351)
T ss_dssp HHTTTT--CHHHHHTSTTHHHHHHHHHHHSCH----HHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHC
T ss_pred HHHHHH--HHHHHhcCcHHHHHHHHHHHhCCH----HHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhC
Confidence 999998 999999999999999999999998 899999999986 7899999999999999998654
No 7
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=4.2e-46 Score=341.85 Aligned_cols=299 Identities=16% Similarity=0.183 Sum_probs=277.6
Q ss_pred hhcHHHHHhhcCCC--HHHHHHHHHHHHhhHHhhccCccchHHHHHHhhhcCHHHHHHHHHHHhcccchhhhhhccccCc
Q 035754 22 EGSQYLQENLSSGD--SRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGS 99 (335)
Q Consensus 22 ~~s~~lq~~l~~~~--~e~~~~i~~e~~~~~~~L~~~~~gs~v~q~ll~~~~~~~~~~i~~~l~~~~~~~~~l~~~~~gs 99 (335)
..|++|+++..... +.++...++++.|++.+++.|++||+++|+++++++++++..|++++. +++.+|+.|+||+
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~---~~~~~L~~d~~gn 79 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIR---DDAIELSNDVFGN 79 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHG---GGHHHHHHSTTTH
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHH---HHHHHHhhCcccc
Confidence 46889999998774 478889999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHhhhhhhcCCCccHHHHHHhhcCCcchhHHHHHHHHHhHHHhhcCCCccHHHHHH
Q 035754 100 SSVKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNF 179 (335)
Q Consensus 100 ~vlq~ll~~~~~~~~~~~~i~~~l~~~~~~l~~d~~g~~vvq~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~g~~vlq~~ 179 (335)
+|+|++++. +++++...+.+.+.+++..++.|++|++|+|++++.++++++..+++.+.+++..++.|++|++|+|++
T Consensus 80 ~vvQkll~~--~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~ 157 (369)
T 3k49_A 80 YVIQKFFEF--GSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKA 157 (369)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHH
T ss_pred cHHHHHHHh--CCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHH
Confidence 999999998 678888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccChHHHHHHHHHHHHhHHhhhcCCChhHHHHHhhccCChhhHHHHHHHHHHhHHHhccCcchhHHHHHHHhcCCcH-
Q 035754 180 IDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNAV- 258 (335)
Q Consensus 180 l~~~~~~~~~~l~~~l~~~~~~l~~d~~G~~viq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~gS~vve~~l~~~~~~- 258 (335)
++.++++.+..+++.+.+++..++.+++|++|+|++++.++++.+..+++.+.+++..|+.|+||++|+|++++.+++.
T Consensus 158 l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~ 237 (369)
T 3k49_A 158 IETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTN 237 (369)
T ss_dssp HHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred -------HHHHHHHhChhhHHhhhcCcchhHHHHHHHhhccCcCcHHHHHHHHHHHHH-------------HHHhhhcCC
Q 035754 259 -------HYIIEELLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQ-------------HLAALRVMK 318 (335)
Q Consensus 259 -------~~i~~~l~~~~~~~~l~~~~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~~-------------~~~~L~~~~ 318 (335)
+.|++.+.+ ++..|++|+||++|++++|+.+++ .+++.+++++.+ .+..|..++
T Consensus 238 ~~~~~~~~~i~~~l~~--~~~~Ls~~k~gS~Vvek~l~~~~~----~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~ 311 (369)
T 3k49_A 238 KEMVDIKQEIIETVAN--NVVEYSKHKFASNVVEKSILYGSK----NQKDLIISKILPRDKNHALNLEDDSPMILMIKDQ 311 (369)
T ss_dssp HHHHHHHHHHHHHHHT--THHHHHTSTTHHHHHHHHHHHSCH----HHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTST
T ss_pred hhhHhHHHHHHHHHHH--HHHHHHhhhHhhHHHHHHHHhCCH----HHHHHHHHHHhccccccccccccccHHHHHHhCc
Confidence 467888888 999999999999999999999987 899999999854 367899999
Q ss_pred ChHHHHHHHHhhC
Q 035754 319 YGSNVYKWTTASH 331 (335)
Q Consensus 319 ~gs~v~~~l~~~~ 331 (335)
||.+|+++++...
T Consensus 312 ~gNyViq~~l~~~ 324 (369)
T 3k49_A 312 FANYVIQKLVNVS 324 (369)
T ss_dssp THHHHHHHHHHHC
T ss_pred chHHHHHHHHHhC
Confidence 9999999998764
No 8
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=8.1e-44 Score=322.71 Aligned_cols=277 Identities=17% Similarity=0.208 Sum_probs=255.7
Q ss_pred HHHHHHHhhHHhhccCccchHHHHHHhhhcCHHHHHHHHHHHhcccchhhhhhccccCcHHHHHHHhhhcCChhHHHHHH
Q 035754 41 KLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVM 120 (335)
Q Consensus 41 ~i~~e~~~~~~~L~~~~~gs~v~q~ll~~~~~~~~~~i~~~l~~~~~~~~~l~~~~~gs~vlq~ll~~~~~~~~~~~~i~ 120 (335)
.+++++.|++.+++.|++||+++|++++.++++++..|++++. +++.+|+.|+||++|+|++++. .++++...+.
T Consensus 6 ~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~---~~~~~L~~d~~gn~vvQkll~~--~~~~~~~~i~ 80 (333)
T 3bwt_A 6 AVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETK---DYTVELMTDSFGNYLIQKLLEE--VTTEQRIVLT 80 (333)
T ss_dssp CCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHG---GGHHHHHTSTTHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHH---HHHHHHhcCcccHHHHHHHHhh--CCHHHHHHHH
Confidence 4577899999999999999999999999999999999999999 9999999999999999999998 5677777888
Q ss_pred HHHHHhhhhhhcCCCccHHHHHHhhcCCc-chhHHHHHHHHHhHHHhhcCCCccHHHHHHHhccChHHHHHHHHHHHHhH
Q 035754 121 SALKRLFKFLMMTKPGSSVILQCLEPSYN-HKNDFIYQAALEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNA 199 (335)
Q Consensus 121 ~~l~~~~~~l~~d~~g~~vvq~~l~~~~~-~~~~~l~~~~~~~~~~l~~~~~g~~vlq~~l~~~~~~~~~~l~~~l~~~~ 199 (335)
+.+.+++.+++.|++|++|+|++++.++. +++..+++.+.+++..++.|++|++|+|++++..+++.+..+++.+.+++
T Consensus 81 ~~~~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~ 160 (333)
T 3bwt_A 81 KISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSC 160 (333)
T ss_dssp HHHGGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSH
T ss_pred HHHHhHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999754 56778899999999999999999999999999999999999999999999
Q ss_pred HhhhcCCChhHHHHHhhccCChhhHHHHHHHHHHhHHHhccCcchhHHHHHHHhcCCcH------HHHHHHHhChhhHHh
Q 035754 200 ASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNAV------HYIIEELLNSDQILQ 273 (335)
Q Consensus 200 ~~l~~d~~G~~viq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~gS~vve~~l~~~~~~------~~i~~~l~~~~~~~~ 273 (335)
..++.+++|++|+|++++.++++.+..+++.+.+++..|+.|+||++|+|++++.+++. +.|++.+.+ ++..
T Consensus 161 ~~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~--~~~~ 238 (333)
T 3bwt_A 161 IDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKP--RAIE 238 (333)
T ss_dssp HHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGG--GHHH
T ss_pred HHHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHH--HHHH
Confidence 99999999999999999999999999999999999999999999999999999987653 578888887 9999
Q ss_pred hhcCcchhHHHHHHHhhccCcCcHHHHHHHHHHHH-----HHHHhhhcCCChHHHHHHHHhh
Q 035754 274 VANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQ-----QHLAALRVMKYGSNVYKWTTAS 330 (335)
Q Consensus 274 l~~~~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~-----~~~~~L~~~~~gs~v~~~l~~~ 330 (335)
|++|+||++|++++++.++. ++.++.++. +.+..|+.++||.+|+++++..
T Consensus 239 Ls~~k~gs~Vvek~l~~~~~------~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~ 294 (333)
T 3bwt_A 239 LSIHKFGSNVIEKILKTAIV------SEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDI 294 (333)
T ss_dssp HHTSTTHHHHHHHHHTSHHH------HHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHcccch------hHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHh
Confidence 99999999999999986543 456777765 5789999999999999999854
No 9
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=2.8e-42 Score=316.23 Aligned_cols=282 Identities=16% Similarity=0.163 Sum_probs=249.8
Q ss_pred HHHH--HhhHHhhccCccchHHHHHHhhhcCHHH-HHHHHHHHhcccchhhhhhccccCcHHHHHHHhhhcCChhHHHHH
Q 035754 43 FWVV--SGFTFELMSGQYGRFVFGKFIESCNESQ-LALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHV 119 (335)
Q Consensus 43 ~~e~--~~~~~~L~~~~~gs~v~q~ll~~~~~~~-~~~i~~~l~~~~~~~~~l~~~~~gs~vlq~ll~~~~~~~~~~~~i 119 (335)
++++ .|++.+++.|++||+++|+.++.+++++ +..+++++....+++.+|+.|+||++|+|++++. +..++...++
T Consensus 13 L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~-~~~~~~~~li 91 (382)
T 3v71_A 13 LEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVEL-ATPAEQRELL 91 (382)
T ss_dssp HHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHT-CCHHHHHHHH
T ss_pred HHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHh-CCHHHHHHHH
Confidence 5566 6999999999999999999999987654 6788898864446889999999999999999998 5544555556
Q ss_pred HHHHHHhhhhhhcCCCccHHHHHHhhcCCcchhHHHHHHHHH-hHHHhhcCCCccHHHHHHHhccChHHHHHHHHHHH--
Q 035754 120 MSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALE-HCLYLACHEQGCINLNNFIDNMKGSRRKQILHLIS-- 196 (335)
Q Consensus 120 ~~~l~~~~~~l~~d~~g~~vvq~~l~~~~~~~~~~l~~~~~~-~~~~l~~~~~g~~vlq~~l~~~~~~~~~~l~~~l~-- 196 (335)
.+.+.+++..++.|.+|++|+|++++.++.+++..+++.+.+ ++..++.|++|++|+|++++..+++.+..|++.+.
T Consensus 92 ~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~~ 171 (382)
T 3v71_A 92 RQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSG 171 (382)
T ss_dssp HHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHHST
T ss_pred HHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHhcc
Confidence 565789999999999999999999999999999999999998 89999999999999999999999999999999987
Q ss_pred HhHHhhhcCCChhHHHHHhhccCChhh-----------HHHHHHHHHHhHHHhccCcchhHHHHHHHhcCCc--H--HHH
Q 035754 197 VNAASLSRHRSGNYVVQHVLSLEDPFL-----------IDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNA--V--HYI 261 (335)
Q Consensus 197 ~~~~~l~~d~~G~~viq~~l~~~~~~~-----------~~~i~~~l~~~~~~l~~~~~gS~vve~~l~~~~~--~--~~i 261 (335)
+++..++.|+||++|+|++++.++++. ...+++.+.++...|+.|+||++|+|++++.++. . ..|
T Consensus 172 ~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~i 251 (382)
T 3v71_A 172 DSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTI 251 (382)
T ss_dssp THHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHHH
T ss_pred cchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHHHH
Confidence 699999999999999999999876542 2356778888999999999999999999999764 2 678
Q ss_pred HHH-HhChhhHHhhhcCcchhHHHHHHHhhccCcCcHHHHHHHHHHHHH-----------HHHhhhcCCChHHHHHHHHh
Q 035754 262 IEE-LLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQ-----------HLAALRVMKYGSNVYKWTTA 329 (335)
Q Consensus 262 ~~~-l~~~~~~~~l~~~~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~~-----------~~~~L~~~~~gs~v~~~l~~ 329 (335)
+.+ +.+ ++..|++|+|||+|++++|..+++ .+++.+++++.+ .+..|..++||.+|+++++.
T Consensus 252 i~~~l~~--~~~~Ls~~k~gS~Vvek~l~~~~~----~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~ 325 (382)
T 3v71_A 252 IDKCLLR--NLLSMSQDKYASHVIEGAFLFAPP----ALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMIS 325 (382)
T ss_dssp HHHTTTT--CHHHHTTSTTHHHHHHHHHHHCCH----HHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHhcCchHhHHHHHHHHhCCH----HHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHH
Confidence 875 777 999999999999999999999998 899999999974 78899999999999999986
Q ss_pred hC
Q 035754 330 SH 331 (335)
Q Consensus 330 ~~ 331 (335)
..
T Consensus 326 ~~ 327 (382)
T 3v71_A 326 IC 327 (382)
T ss_dssp HH
T ss_pred Hc
Confidence 53
No 10
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=2.4e-40 Score=305.37 Aligned_cols=276 Identities=14% Similarity=0.200 Sum_probs=248.0
Q ss_pred HhhHHhhccCccchHHHHHHhhhc-CHHHHHHHHHHHhcccchhhhhhccccCcHHHHHHHhhhcCCh-------hHHHH
Q 035754 47 SGFTFELMSGQYGRFVFGKFIESC-NESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLP-------PLLYH 118 (335)
Q Consensus 47 ~~~~~~L~~~~~gs~v~q~ll~~~-~~~~~~~i~~~l~~~~~~~~~l~~~~~gs~vlq~ll~~~~~~~-------~~~~~ 118 (335)
+|++.+++.|++||+++|+.++.+ +++++..|++++.+..+++.+|+.|+||++|+|++++. + ++ ++...
T Consensus 28 ~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~-~-~~~~~~~~~~q~~~ 105 (412)
T 3k62_A 28 SGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGI-S-LATNDDGYTKRQEK 105 (412)
T ss_dssp HTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHH-H-HHCCSTTHHHHHHH
T ss_pred CCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHh-C-CcccccccHHHHHH
Confidence 699999999999999999999997 89999999999982222489999999999999999998 3 44 56667
Q ss_pred HHHHHHHhhhhhhcCCCccHHHHHHhhcCCcchhHHHHHHH--HHhHHHhhcCCCccHHHHHHHhccChHHHHHHHHHHH
Q 035754 119 VMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAA--LEHCLYLACHEQGCINLNNFIDNMKGSRRKQILHLIS 196 (335)
Q Consensus 119 i~~~l~~~~~~l~~d~~g~~vvq~~l~~~~~~~~~~l~~~~--~~~~~~l~~~~~g~~vlq~~l~~~~~~~~~~l~~~l~ 196 (335)
+.+.+.+++..++.|++|++|+|++++.++++++..+++.+ .+++..++.|++|++|+|++++..+++.+..|++.+.
T Consensus 106 i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~ 185 (412)
T 3k62_A 106 LKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVA 185 (412)
T ss_dssp HHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHh
Confidence 78889999999999999999999999999999999999999 6899999999999999999999999999999999987
Q ss_pred --HhHHhhhcCCChhHHHHHhhccCCh------------hhHH----HHHHHHHHhHHHhccCcchhHHHHHHHhcCCcH
Q 035754 197 --VNAASLSRHRSGNYVVQHVLSLEDP------------FLID----AICFALRGHYVDLSLTKCGSFVVQKCLKYQNAV 258 (335)
Q Consensus 197 --~~~~~l~~d~~G~~viq~~l~~~~~------------~~~~----~i~~~l~~~~~~l~~~~~gS~vve~~l~~~~~~ 258 (335)
+++.++++|+||++|+|++++..++ +.+. .+++.+..+...|+.|+||++|+|.+++.+.+.
T Consensus 186 ~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~ 265 (412)
T 3k62_A 186 TPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLA 265 (412)
T ss_dssp SHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGH
T ss_pred cchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCch
Confidence 6999999999999999999998763 2333 467777888999999999999999999998764
Q ss_pred ---HHHHHH-HhChhhHHhhhcCcchhHHHHHHHhhccCcCcHHHHHHHHHHHHH-----------HHHhhhcCCChHHH
Q 035754 259 ---HYIIEE-LLNSDQILQVANDKYGNYVIQTALAETMRQDRLSVHQRLVTKLQQ-----------HLAALRVMKYGSNV 323 (335)
Q Consensus 259 ---~~i~~~-l~~~~~~~~l~~~~~g~~Viq~~l~~~~~~~~~~~~~~l~~~l~~-----------~~~~L~~~~~gs~v 323 (335)
..|+.. +.+ ++..|++|+||++||+++|+.+++ ..+..++++|.. .+..|..++||.+|
T Consensus 266 ~~r~~ii~~~l~~--~~~~LS~~KfgSnVVek~L~~~~~----~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYV 339 (412)
T 3k62_A 266 VYRECIIEKCLMR--NLLSLSQEKFASHVVEKAFLHAPL----ELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYV 339 (412)
T ss_dssp HHHHHHHHHHTTT--CHHHHHTSTTHHHHHHHHHHHCCH----HHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHH
T ss_pred hHHHHHHHHHHHH--HHHHHhcccHhHHHHHHHHHhCCH----HHHHHHHHHHHhhccCCccccchHHHHHhcCCchHHH
Confidence 567764 777 999999999999999999999988 899999999985 48889999999999
Q ss_pred HHHHHhh
Q 035754 324 YKWTTAS 330 (335)
Q Consensus 324 ~~~l~~~ 330 (335)
+++++.-
T Consensus 340 iQ~~L~~ 346 (412)
T 3k62_A 340 VQCMLTI 346 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 11
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=86.72 E-value=13 Score=32.43 Aligned_cols=160 Identities=13% Similarity=0.027 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHhhHHhhccCccchHHHHHHhhh-cCHHHHHHHHHHHhccc--chhhhhhccccCcHHHHHHHhhh
Q 035754 33 SGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIES-CNESQLALIILKITFQD--QLFLLASVDKFGSSSVKKLIKVV 109 (335)
Q Consensus 33 ~~~~e~~~~i~~e~~~~~~~L~~~~~gs~v~q~ll~~-~~~~~~~~i~~~l~~~~--~~~~~l~~~~~gs~vlq~ll~~~ 109 (335)
.-++++.+.|++||...+..-..-..|+--++.++.. ..++.-..|++.+.... ..|..|. ......+-.++..
T Consensus 51 ~v~~~~~~~Vl~EF~~~~~~~~~i~~gg~~~~~~L~~aLg~~~A~~ll~~i~~~~~~~~~~~L~--~~dp~~la~~i~~- 127 (329)
T 3hjl_A 51 SVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENIKKVIPPTLAEKFRGILELGDAEKILKEIE--KVDSRILASLLKN- 127 (329)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH--TSCHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCHHHHHHHHHHHhccccCCHHHHHH--CCCHHHHHHHHHh-
Confidence 3456677777777766555443322222344444433 33333344444444110 0111111 1233444444443
Q ss_pred cCChhHHHHHHHHHHHh----hhhhhcCCCccHHHHHHhhc--CCcchhHHHHHHHHHhHHHh---hc-CCCccHHHHHH
Q 035754 110 AHLPPLLYHVMSALKRL----FKFLMMTKPGSSVILQCLEP--SYNHKNDFIYQAALEHCLYL---AC-HEQGCINLNNF 179 (335)
Q Consensus 110 ~~~~~~~~~i~~~l~~~----~~~l~~d~~g~~vvq~~l~~--~~~~~~~~l~~~~~~~~~~l---~~-~~~g~~vlq~~ 179 (335)
-+|+....+...+.+. +...+-+...+-|+.++... .+|+..+.+-+.+...+... .. ..-|...+-.+
T Consensus 128 -EhPQtiAlILs~L~p~~AA~vL~~Lp~~~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~I 206 (329)
T 3hjl_A 128 -EHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAEL 206 (329)
T ss_dssp -SCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred -CCHHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHH
Confidence 3444444444333322 22222223333444444333 33333444433333333222 11 23345556666
Q ss_pred HhccChHHHHHHHHHHH
Q 035754 180 IDNMKGSRRKQILHLIS 196 (335)
Q Consensus 180 l~~~~~~~~~~l~~~l~ 196 (335)
+...+......++..+.
T Consensus 207 LN~~d~~~e~~il~~L~ 223 (329)
T 3hjl_A 207 LNTLDKETRELILQSIG 223 (329)
T ss_dssp HHHSCHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHH
Confidence 66666555555555554
No 12
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=54.24 E-value=96 Score=25.97 Aligned_cols=183 Identities=13% Similarity=0.043 Sum_probs=97.4
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHhcccchhhhhhccccCcHHHHHHHhhhc---CChhHHHHHHHHHHHhhhhhhcCCCcc
Q 035754 61 FVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVA---HLPPLLYHVMSALKRLFKFLMMTKPGS 137 (335)
Q Consensus 61 ~v~q~ll~~~~~~~~~~i~~~l~~~~~~~~~l~~~~~gs~vlq~ll~~~~---~~~~~~~~i~~~l~~~~~~l~~d~~g~ 137 (335)
...-.++.-|++.+...+.+.+.- ..+...... ...+.++.. . ....-..++...+.+.+.++ ...++
T Consensus 38 ~~~l~~L~~~sp~q~e~lc~~L~l-----~~lsd~~l~-~lc~~ll~l-s~dlS~~~a~v~~~~l~LPkil~L--~~~AS 108 (264)
T 2ilr_A 38 PVELQLLHECSPSQMDLLCAQLQL-----PQLSDLGLL-RLCTWLLAL-SPDLSLSNATVLTRSLFLGRILSL--TSSAS 108 (264)
T ss_dssp CHHHHGGGGCCHHHHHHHHHHHTG-----GGCCHHHHH-HHHHHHHHC-SSCCCHHHHHHHHHHHHHHHHHHC--SSCCC
T ss_pred hHHHHHHHhCCHHHHHHHHHHHhh-----ccCCHHHHH-HHHHHHHcC-CcchhhhhHHHHHHHHHHHHHHhc--cCcch
Confidence 355566666888888887777762 122111110 122333432 1 11222234444566777777 55666
Q ss_pred HHHHHHhhcCCcchhHHHHHHHH-HhHHHhhcCCCccHHHHHHHh--ccChHHHHHHHHHHHHhHHhhhcCCChhHHHHH
Q 035754 138 SVILQCLEPSYNHKNDFIYQAAL-EHCLYLACHEQGCINLNNFID--NMKGSRRKQILHLISVNAASLSRHRSGNYVVQH 214 (335)
Q Consensus 138 ~vvq~~l~~~~~~~~~~l~~~~~-~~~~~l~~~~~g~~vlq~~l~--~~~~~~~~~l~~~l~~~~~~l~~d~~G~~viq~ 214 (335)
.++...+..+....-..+++.+. +-+..-..++.-+-++.++++ ..+++.+..++..+. ++.=+..---|+|.
T Consensus 109 R~L~sal~~f~k~~p~a~~~all~PLL~~~~~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL----~l~WtE~~~~Vlq~ 184 (264)
T 2ilr_A 109 RLLTTALTSFAAKYTYPVCSALLDPVLQAPGTGPAQTELLCCLVKMESLEPDAQVLMLGQIL----ELPWKEETFLVLQS 184 (264)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH----HSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHH----hccchHHHHHHHHH
Confidence 66544444433444445554433 333332333344567788885 346677776766664 45556666778999
Q ss_pred hhccC---ChhhHHHHHHHHHHhHHHhccCcchhHHHHHHHhcCC
Q 035754 215 VLSLE---DPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQN 256 (335)
Q Consensus 215 ~l~~~---~~~~~~~i~~~l~~~~~~l~~~~~gS~vve~~l~~~~ 256 (335)
+++.. +++....+++.+.+.-..++.+.--++++-.++...+
T Consensus 185 lL~~k~~L~~~~i~~Lv~~L~~~a~~~skSlkFakLll~~itky~ 229 (264)
T 2ilr_A 185 LLERQVEMTPEKFSVLMEKLCKKGLAATTSMAYAKLMLTVMTKYQ 229 (264)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHC-----CCSHHHHHHHHHHHHHTG
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHhHHhhcccHHHHHHHHHHHHhH
Confidence 99965 4456667777776666666666555555555555553
No 13
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=47.73 E-value=54 Score=27.81 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=67.7
Q ss_pred cHHHHHHhhc--CCcchhHHHHHHHHHhHHHh---hcCCCccHHHHHHHhccChHHHHHHHHHHHHhHHhhhcCC-ChhH
Q 035754 137 SSVILQCLEP--SYNHKNDFIYQAALEHCLYL---ACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHR-SGNY 210 (335)
Q Consensus 137 ~~vvq~~l~~--~~~~~~~~l~~~~~~~~~~l---~~~~~g~~vlq~~l~~~~~~~~~~l~~~l~~~~~~l~~d~-~G~~ 210 (335)
+-|+.++... .+|+..+.+-+.+...+... ....-|...+-.++...+.+....++..+...=..++..= .-=|
T Consensus 103 ~dV~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~iL~~L~~~dpelAe~Ir~~MF 182 (279)
T 3pkr_A 103 AEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMF 182 (279)
T ss_dssp HHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHHTSCHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHHcCChHHHHHHHHHHHhhCHHHHHHHHHhcc
Confidence 3444444433 44555555555554444332 2334466788888888888887788887764333322210 0112
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhHHHhccCcchhHHHHHHHhcCCcH
Q 035754 211 VVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNAV 258 (335)
Q Consensus 211 viq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~gS~vve~~l~~~~~~ 258 (335)
+..-++. -++.....+++.+......++..--..-+-+++|.+-+..
T Consensus 183 ~FeDl~~-lddr~iq~llreV~~~~L~~ALKGa~~elrekil~nmS~R 229 (279)
T 3pkr_A 183 TFEDIVK-LDNFAIREILKVADKKDLSLALKTSTKDLTDKFLNNMSSR 229 (279)
T ss_dssp CGGGGGG-SCHHHHHHHHHHSCHHHHHHHTTTSCHHHHHHHHTTSCHH
T ss_pred CHHHHhc-CCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhcCHH
Confidence 2223332 3555667777777666666666655666777777777765
No 14
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=45.49 E-value=91 Score=25.24 Aligned_cols=125 Identities=12% Similarity=0.095 Sum_probs=56.6
Q ss_pred CCCccHHHHHHhhc--CCcchhHHHHHHHHHhHHHhhcC----CCccHHHHHHHhccChHHHHHHHHHHHHhHHhhhcCC
Q 035754 133 TKPGSSVILQCLEP--SYNHKNDFIYQAALEHCLYLACH----EQGCINLNNFIDNMKGSRRKQILHLISVNAASLSRHR 206 (335)
Q Consensus 133 d~~g~~vvq~~l~~--~~~~~~~~l~~~~~~~~~~l~~~----~~g~~vlq~~l~~~~~~~~~~l~~~l~~~~~~l~~d~ 206 (335)
....+-|+.++... .+|+..+.+-+.+...+...... .-|...+-.++...+.+....+++.+...=..++..=
T Consensus 41 ~~~~~ev~~Ria~l~~v~p~~~~~l~~~L~~~l~~~~~~~~~~~gG~~~~A~IlN~~~~~~e~~il~~L~~~d~ela~~I 120 (216)
T 4fhr_B 41 EELQTEVLKRIALLERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEI 120 (216)
T ss_dssp GGGHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTCC-------CSHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcccccccccCCcHHHHHHHHHcCChhHHHHHHHHHHhcCHHHHHHH
Confidence 34444455544433 34444444444444443322221 2355677778888877777777777654333332210
Q ss_pred C-hhHHHHHhhccCChhhHHHHHHHHHHhHHHhccCcchhHHHHHHHhcCCcH
Q 035754 207 S-GNYVVQHVLSLEDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKYQNAV 258 (335)
Q Consensus 207 ~-G~~viq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~gS~vve~~l~~~~~~ 258 (335)
- --|+..-++. -++.....+++.+......++..--..-+.+++|..-+..
T Consensus 121 ~~~mF~Fedl~~-ld~~~iq~llr~v~~~~L~~ALKga~~e~~e~il~nmS~R 172 (216)
T 4fhr_B 121 RRRMFVFEDILK-LDDRSIQLVLREVDTRDLALALKGASDELKEKIFKNMSKR 172 (216)
T ss_dssp HHHHSCGGGGGG-SCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHTTSCHH
T ss_pred HHHhcCHHHHhC-CCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhCCHH
Confidence 0 0111111111 2333344444444333333443334445666666666554
No 15
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=42.45 E-value=2e+02 Score=26.55 Aligned_cols=36 Identities=17% Similarity=0.044 Sum_probs=25.3
Q ss_pred CChhhHHHHHHHHHHhHHHhccCcchhHHHHHHHhc
Q 035754 219 EDPFLIDAICFALRGHYVDLSLTKCGSFVVQKCLKY 254 (335)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~l~~~~~gS~vve~~l~~ 254 (335)
.+++..++++..+...+.-.+....++..+.-+++.
T Consensus 233 sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~k 268 (507)
T 3u0r_A 233 SDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQ 268 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHh
Confidence 356677777777777777777777777666666554
No 16
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=39.51 E-value=30 Score=28.86 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=35.4
Q ss_pred HhhhhhhcCCCccHHHHHHhhcCCcchhHHHHHHHHHhHHHh
Q 035754 125 RLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALEHCLYL 166 (335)
Q Consensus 125 ~~~~~l~~d~~g~~vvq~~l~~~~~~~~~~l~~~~~~~~~~l 166 (335)
+-+..+++-+.|..++.+++.+.+++++-.++..+..++..|
T Consensus 71 ~~Fi~~Lsv~KGKkLl~Rll~~L~~~q~~til~~I~~~L~~L 112 (248)
T 2xes_A 71 DHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFL 112 (248)
T ss_dssp HHHHHHHTSHHHHHHHHHHGGGSCHHHHHHHHHHHHHTHHHH
T ss_pred CceeeeeehHhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 346677888889999999999999999988999988887666
No 17
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=35.87 E-value=35 Score=22.31 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=26.0
Q ss_pred HHHhHHHhccCcchhHHHHHHHhcCCcH-HHHHHHHhC
Q 035754 231 LRGHYVDLSLTKCGSFVVQKCLKYQNAV-HYIIEELLN 267 (335)
Q Consensus 231 l~~~~~~l~~~~~gS~vve~~l~~~~~~-~~i~~~l~~ 267 (335)
....+.++.-+ +|.-.+.+|++..+.. +.+++.|+.
T Consensus 16 ~I~qV~DLfPd-LG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 16 LISQVKDLLPD-LGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHCCS-SCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHccc-CCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 33344444443 8899999999988766 888888887
No 18
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=31.96 E-value=2.5e+02 Score=24.29 Aligned_cols=153 Identities=14% Similarity=0.032 Sum_probs=74.1
Q ss_pred cCHHHHHHHHHHHhcccchhhhhhccccCcHHHHHHHhhhcCChhHHHHHHHHHHHh----hhhhhcCCCcc--------
Q 035754 70 CNESQLALIILKITFQDQLFLLASVDKFGSSSVKKLIKVVAHLPPLLYHVMSALKRL----FKFLMMTKPGS-------- 137 (335)
Q Consensus 70 ~~~~~~~~i~~~l~~~~~~~~~l~~~~~gs~vlq~ll~~~~~~~~~~~~i~~~l~~~----~~~l~~d~~g~-------- 137 (335)
-+++....++.+|. ..+..-..-..|+..++++++. +-+++....+.+.+.+. ..+.+..-...
T Consensus 52 v~~~~~~~Vl~EF~---~~~~~~~~i~~gg~~~~~~L~~-aLg~~~A~~ll~~i~~~~~~~~~~~L~~~dp~~la~~i~~ 127 (329)
T 3hjl_A 52 VPEEEIENIAEELL---DEIKKAGIKIKKPEEFIENIKK-VIPPTLAEKFRGILELGDAEKILKEIEKVDSRILASLLKN 127 (329)
T ss_dssp CCHHHHHHHHHHHH---HHHHHTTCCCSCHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHH---HHHHhcCCCCCchHHHHHHHHH-hCCHHHHHHHHHHHhccccCCHHHHHHCCCHHHHHHHHHh
Confidence 46777777777777 5555444333344788888887 44444444444434332 11111111111
Q ss_pred ---HHHHHHhhcCCcchhHHHHHHHHHhHHHhhcCCCccHHHHHHHhc--cChHHHHHHHHHHHHhHHhh----hcCCCh
Q 035754 138 ---SVILQCLEPSYNHKNDFIYQAALEHCLYLACHEQGCINLNNFIDN--MKGSRRKQILHLISVNAASL----SRHRSG 208 (335)
Q Consensus 138 ---~vvq~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~g~~vlq~~l~~--~~~~~~~~l~~~l~~~~~~l----~~d~~G 208 (335)
.++--++.+.++++-..++..+.+. ...-|+.++-.. .+++....+-..+...+... .....|
T Consensus 128 EhPQtiAlILs~L~p~~AA~vL~~Lp~~--------~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG 199 (329)
T 3hjl_A 128 EHPQTIALFLSQLSPKKSAEIIQNLPEE--------LKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEG 199 (329)
T ss_dssp SCHHHHHHHHTTSCHHHHHHHHHTSCHH--------HHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHhCCHH--------HHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhccccccccccc
Confidence 1222333334444444444333332 122334444332 23443333322232222221 224567
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHh
Q 035754 209 NYVVQHVLSLEDPFLIDAICFALRGH 234 (335)
Q Consensus 209 ~~viq~~l~~~~~~~~~~i~~~l~~~ 234 (335)
...+-.+|...+....+.+++.+...
T Consensus 200 ~~~vA~ILN~~d~~~e~~il~~L~~~ 225 (329)
T 3hjl_A 200 TAVAAELLNTLDKETRELILQSIGQE 225 (329)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 77788888888777777777777654
No 19
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=28.54 E-value=2.4e+02 Score=23.40 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=13.9
Q ss_pred hHHhhhcCcchhHHHHHHHhhc
Q 035754 270 QILQVANDKYGNYVIQTALAET 291 (335)
Q Consensus 270 ~~~~l~~~~~g~~Viq~~l~~~ 291 (335)
.+..|.++. -.|++..+|...
T Consensus 193 eI~elL~~e-D~~l~e~aLd~L 213 (265)
T 3b2a_A 193 EIPSLLQND-NEFIVELALDVL 213 (265)
T ss_dssp THHHHHTCS-CHHHHHHHHHHH
T ss_pred HHHHHHcCC-CHHHHHHHHHHH
Confidence 566677666 667777776653
No 20
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=27.77 E-value=57 Score=27.15 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=34.4
Q ss_pred HHHhhcCCCccHHHHHHHhccChHHHHHHHHHHHHhHHhhhc
Q 035754 163 CLYLACHEQGCINLNNFIDNMKGSRRKQILHLISVNAASLSR 204 (335)
Q Consensus 163 ~~~l~~~~~g~~vlq~~l~~~~~~~~~~l~~~l~~~~~~l~~ 204 (335)
+..+...+-|-.++.+++..-+++++..++..+..++..|.+
T Consensus 73 Fi~~Lsv~KGKkLl~Rll~~L~~~q~~til~~I~~~L~~Li~ 114 (248)
T 2xes_A 73 FVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIK 114 (248)
T ss_dssp HHHHHTSHHHHHHHHHHGGGSCHHHHHHHHHHHHHTHHHHHH
T ss_pred eeeeeehHhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhh
Confidence 455666677888999999999999999999999888877754
No 21
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=26.43 E-value=1.8e+02 Score=24.39 Aligned_cols=13 Identities=0% Similarity=0.222 Sum_probs=5.8
Q ss_pred HhhcCCCHHHHHH
Q 035754 29 ENLSSGDSRILDK 41 (335)
Q Consensus 29 ~~l~~~~~e~~~~ 41 (335)
.+++.+++|....
T Consensus 128 aLvK~dd~eVi~f 140 (268)
T 2fv2_A 128 ALVKTDEQEVINF 140 (268)
T ss_dssp HHGGGCCHHHHHH
T ss_pred HHhccCcHHHHHH
Confidence 3444444444443
No 22
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=24.79 E-value=2.7e+02 Score=22.36 Aligned_cols=84 Identities=8% Similarity=0.013 Sum_probs=43.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHh----hHHhhccCccchHHHHHHhhh--cCHHHHHHHHHHHhcccchhhhhh---ccc
Q 035754 26 YLQENLSSGDSRILDKLFWVVSG----FTFELMSGQYGRFVFGKFIES--CNESQLALIILKITFQDQLFLLAS---VDK 96 (335)
Q Consensus 26 ~lq~~l~~~~~e~~~~i~~e~~~----~~~~L~~~~~gs~v~q~ll~~--~~~~~~~~i~~~l~~~~~~~~~l~---~~~ 96 (335)
-|-.+|....|.....|+..+.+ .+..........-|+.++... .+++....+-..+. ..+.... ...
T Consensus 7 ~la~~l~~EhPQ~iA~iLs~L~~~~AA~VL~~Lp~~~~~ev~~Ria~l~~v~p~~~~~l~~~L~---~~l~~~~~~~~~~ 83 (216)
T 4fhr_B 7 QLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLKRIALLERTSPEVVKEIERNLE---KKISGFVSRTFSK 83 (216)
T ss_dssp HHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHTSCGGGHHHHHHHHHHCCCCCHHHHHHHHHHHH---HHSTTCC------
T ss_pred HHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH---HHHhccccccccc
Confidence 34556666677777666666543 334444455555566655433 35665665555555 3332222 222
Q ss_pred -cCcHHHHHHHhhhcCCh
Q 035754 97 -FGSSSVKKLIKVVAHLP 113 (335)
Q Consensus 97 -~gs~vlq~ll~~~~~~~ 113 (335)
-|-..+-.++.. ....
T Consensus 84 ~gG~~~~A~IlN~-~~~~ 100 (216)
T 4fhr_B 84 VGGIDTAAEIMNN-LDRT 100 (216)
T ss_dssp -CSHHHHHHHHHH-SCHH
T ss_pred CCcHHHHHHHHHc-CChh
Confidence 244566667776 4433
No 23
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=23.87 E-value=3.2e+02 Score=22.83 Aligned_cols=47 Identities=9% Similarity=0.180 Sum_probs=27.2
Q ss_pred HHHHHhhhcCHHHHHHHHHHHhcccc---hhhhhhccccCcH--HHHHHHhh
Q 035754 62 VFGKFIESCNESQLALIILKITFQDQ---LFLLASVDKFGSS--SVKKLIKV 108 (335)
Q Consensus 62 v~q~ll~~~~~~~~~~i~~~l~~~~~---~~~~l~~~~~gs~--vlq~ll~~ 108 (335)
+.|-+.+.+.++.|..-+.++.+..+ ++.-+..+.+|.- .+|.++..
T Consensus 5 i~qli~~L~~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisi 56 (268)
T 2fv2_A 5 IYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNI 56 (268)
T ss_dssp HHHHHHHTSSTTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHT
T ss_pred HHHHHHHhcCchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHH
Confidence 44555666677767665555554333 4444456777764 56666664
No 24
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=23.48 E-value=2.6e+02 Score=21.69 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=52.2
Q ss_pred ccCchhcHHHHHhhcCCCHHHHHHHHHHHHhhHHh-hccCccchHHHHHHhhhcCHHHHHHHHHHHhcccchhhhhhccc
Q 035754 18 AQDQEGSQYLQENLSSGDSRILDKLFWVVSGFTFE-LMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDK 96 (335)
Q Consensus 18 a~~~~~s~~lq~~l~~~~~e~~~~i~~e~~~~~~~-L~~~~~gs~v~q~ll~~~~~~~~~~i~~~l~~~~~~~~~l~~~~ 96 (335)
..|.+|.-.|......++.+..+.+++.+...-.+ =..|..|...+...+.....+..+.+++.= ..--..+.
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~~~ 77 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG------ASPMALDR 77 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT------CCTTCCCT
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC------CCccccCC
Confidence 35667777788888888888887777765432222 234566766666666666665544444321 11112355
Q ss_pred cCcHHHHHHHhhhcCChhHHHHHHH
Q 035754 97 FGSSSVKKLIKVVAHLPPLLYHVMS 121 (335)
Q Consensus 97 ~gs~vlq~ll~~~~~~~~~~~~i~~ 121 (335)
.|.-.+..+... +..+..+.+.+
T Consensus 78 ~g~t~l~~A~~~--~~~~~~~~Ll~ 100 (241)
T 1k1a_A 78 HGQTAAHLACEH--RSPTCLRALLD 100 (241)
T ss_dssp TSCCHHHHHHHT--TCHHHHHHHHH
T ss_pred CCCCHHHHHHHc--CCHHHHHHHHH
Confidence 566666666554 44444444433
No 25
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=22.63 E-value=1.8e+02 Score=19.41 Aligned_cols=49 Identities=20% Similarity=0.103 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhhH------HhhccCccchHHHHHHhhhcCHHHHHHHHHHHh
Q 035754 35 DSRILDKLFWVVSGFT------FELMSGQYGRFVFGKFIESCNESQLALIILKIT 83 (335)
Q Consensus 35 ~~e~~~~i~~e~~~~~------~~L~~~~~gs~v~q~ll~~~~~~~~~~i~~~l~ 83 (335)
+.++++.|+.++..-+ .+|+...-||-+=--|-...++.+|..|-+.|.
T Consensus 8 sd~qvE~ll~eli~VLEKH~Ap~DLSLMvLGNmvTNlln~~V~~~qR~~iAe~Fa 62 (83)
T 2jpq_A 8 TDEQVEKILAEVALVLEKHAASPELTLMIAGNIATNVLNQRVAASQRKLIAEKFA 62 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 5678888888886443 578888888877666666789999999888776
No 26
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=21.97 E-value=3e+02 Score=21.85 Aligned_cols=220 Identities=14% Similarity=0.071 Sum_probs=98.7
Q ss_pred hhcHHHHHhhcCCCHHHHHHHHHHHHhhHHhhccCccchHHHHHHhhhcCHHHHHHHHHHHhcccchhhhhhccccCcHH
Q 035754 22 EGSQYLQENLSSGDSRILDKLFWVVSGFTFELMSGQYGRFVFGKFIESCNESQLALIILKITFQDQLFLLASVDKFGSSS 101 (335)
Q Consensus 22 ~~s~~lq~~l~~~~~e~~~~i~~e~~~~~~~L~~~~~gs~v~q~ll~~~~~~~~~~i~~~l~~~~~~~~~l~~~~~gs~v 101 (335)
.|...|......++.+..+.+++.- .-.....+..|...+...+.....+..+.+++.=. + --..+..|.-.
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~--~~~~~~~g~t~ 75 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA----D--PVLRKKNGATP 75 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----C--TTCCCTTCCCH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC----C--CcccCCCCCCH
Confidence 3445566666677776665555431 11122235566666666666666554444443211 1 11234556656
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHhhhhhhcCCCccHHHHHHhhcCCcchhHHHHHHHHH-h------HHHhhcCCCccH
Q 035754 102 VKKLIKVVAHLPPLLYHVMSALKRLFKFLMMTKPGSSVILQCLEPSYNHKNDFIYQAALE-H------CLYLACHEQGCI 174 (335)
Q Consensus 102 lq~ll~~~~~~~~~~~~i~~~l~~~~~~l~~d~~g~~vvq~~l~~~~~~~~~~l~~~~~~-~------~~~l~~~~~g~~ 174 (335)
+..+... +..+..+.+.+ ....--..+..|...+.........+..+.+++.-.. + ...-..+..|..
T Consensus 76 L~~A~~~--~~~~~v~~Ll~---~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t 150 (285)
T 1wdy_A 76 FLLAAIA--GSVKLLKLFLS---KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150 (285)
T ss_dssp HHHHHHH--TCHHHHHHHHH---TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC
T ss_pred HHHHHHc--CCHHHHHHHHH---cCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc
Confidence 6655554 44444443333 1111112345555555544444333322222221000 0 000011344555
Q ss_pred HHHHHHhccChHHHHHHHHHHHHhHHhhhcCCChhHHHHHhhccCChhhHHHHHHHHHHhHHHh-ccCcchhHHHHHHHh
Q 035754 175 NLNNFIDNMKGSRRKQILHLISVNAASLSRHRSGNYVVQHVLSLEDPFLIDAICFALRGHYVDL-SLTKCGSFVVQKCLK 253 (335)
Q Consensus 175 vlq~~l~~~~~~~~~~l~~~l~~~~~~l~~d~~G~~viq~~l~~~~~~~~~~i~~~l~~~~~~l-~~~~~gS~vve~~l~ 253 (335)
.+.........+..+.+++.. ...--..|..|.-.+...+..+.......+++.|...-..+ ..+..|.-.+..+..
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 228 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDEM--GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTS--CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhc--CCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 555555544433333332210 11112345667766766666666555566666665543222 234555555555555
Q ss_pred cCC
Q 035754 254 YQN 256 (335)
Q Consensus 254 ~~~ 256 (335)
...
T Consensus 229 ~~~ 231 (285)
T 1wdy_A 229 KKH 231 (285)
T ss_dssp TTC
T ss_pred cCC
Confidence 444
No 27
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=21.08 E-value=1.9e+02 Score=19.15 Aligned_cols=49 Identities=8% Similarity=-0.001 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHhhH------HhhccCccchHHHHHHhhhcCHHHHHHHHHHHh
Q 035754 35 DSRILDKLFWVVSGFT------FELMSGQYGRFVFGKFIESCNESQLALIILKIT 83 (335)
Q Consensus 35 ~~e~~~~i~~e~~~~~------~~L~~~~~gs~v~q~ll~~~~~~~~~~i~~~l~ 83 (335)
+.++++.|+.++..-+ .+|+.-.-||-+=--|-...++.+|..|-+.|.
T Consensus 8 sd~qvE~ll~eli~VLEKH~Ap~DLSLMvLGN~vTnlln~~V~~~qR~~iAe~Fa 62 (80)
T 2juw_A 8 SNTQVESLIAEILVVLEKHKAPTDLSLMALGNCVTHLLERKVPSESRQAVAEQFA 62 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 5678888888886433 578778888877666666788999988887776
No 28
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=20.53 E-value=3.6e+02 Score=22.14 Aligned_cols=20 Identities=35% Similarity=0.543 Sum_probs=10.2
Q ss_pred HHhhcCCCHHHHHHHHHHHH
Q 035754 28 QENLSSGDSRILDKLFWVVS 47 (335)
Q Consensus 28 q~~l~~~~~e~~~~i~~e~~ 47 (335)
..++...++.....+++++.
T Consensus 13 ~~~l~~~~~~~~~~~l~~l~ 32 (278)
T 2yvy_A 13 QEALQEGDTRALREVLEEIH 32 (278)
T ss_dssp HHHHHHTCHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHhCC
Confidence 34444555555555555544
Done!