BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035755
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 9 LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
+LG ++ P +K AY++ HPD P K +AE KFKL+SEAY L
Sbjct: 14 VLGVQASASPE--DIKKAYRKLALRWHPDKNP-DNKEEAEKKFKLVSEAYEVL 63
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 19 NASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
+A +K AY+RK + HPD P ++ AE KFK ++EAY L
Sbjct: 15 SADDIKKAYRRKALQWHPDKNPDNKEF-AEKKFKEVAEAYEVL 56
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60
M+ + +LG P + +K AY+R + HPD V ++ DAE+KFK ++EA+
Sbjct: 25 MELKDYYAILGVQPTD--DLKTIKTAYRRLARKYHPD---VSKENDAEAKFKDLAEAWEV 79
Query: 61 L 61
L
Sbjct: 80 L 80
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 9 LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGN 65
+LG P ++ + Q+K A+ + + HPD + DAE+KF+ I+EAY L N
Sbjct: 12 ILGVPKSA--SERQIKKAFHKLAMKYHPD---KNKSPDAEAKFREIAEAYETLSDAN 63
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 8 VLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
++G P + +K AY+R + HPD V ++ DAE++FK ++EA+ L
Sbjct: 9 AIMGVKPTD--DLKTIKTAYRRLARKYHPD---VSKEPDAEARFKEVAEAWEVL 57
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 9 LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
+LG P++ N ++K AY++ + HPD P D +FK IS+AY L
Sbjct: 13 VLGVKPDASDN--ELKKAYRKMALKFHPDKNP-----DGAEQFKQISQAYEVL 58
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 9 LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH 67
LLG P S +Q+KAAY R+ + HPD +A +F IS+AY L S
Sbjct: 22 LLGVP--STATQAQIKAAYYRQCFLYHPDRNSG--SAEAAERFTRISQAYVVLGSATLR 76
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 21 SQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
++K AY+R+ HPD ++ AE KFK I+EAY L
Sbjct: 18 EEIKRAYRRQALRYHPD---KNKEPGAEEKFKEIAEAYDVL 55
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
+K AY++ + HPD P K +AE +FK ++EAY L
Sbjct: 26 IKKAYRKLALKWHPDKNPEN-KEEAERRFKQVAEAYEVL 63
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 9 LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
+LG + +++ AYKR + HPD G K +AE+KFK I EAY L
Sbjct: 8 ILGVSKTAEER--EIRKAYKRLAMKYHPDR-NQGDK-EAEAKFKEIKEAYEVL 56
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 9 LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
+LG + +++ AYKR + HPD G K +AE+KFK I EAY L
Sbjct: 8 ILGVSKTAEER--EIRKAYKRLAMKYHPDR-NQGDK-EAEAKFKEIKEAYEVL 56
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 9 LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
+LG + +++ AYKR + HPD + +AE+KFK I EAY L
Sbjct: 8 ILGVSKTAEER--EIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVL 56
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 21 SQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
+ +K AYK+ E HPD + AE +F IS+AY L
Sbjct: 32 ADIKKAYKKLAREWHPD---KNKDPGAEDRFIQISKAYEIL 69
>pdb|4H6Q|A Chain A, Structure Of Oxidized Deinococcus Radiodurans Proline
Dehydrogenase Complexed With L-Tetrahydrofuroic Acid
pdb|4H6Q|C Chain C, Structure Of Oxidized Deinococcus Radiodurans Proline
Dehydrogenase Complexed With L-Tetrahydrofuroic Acid
pdb|4H6R|A Chain A, Structure Of Reduced Deinococcus Radiodurans Proline
Dehydrogenase
pdb|4H6R|C Chain C, Structure Of Reduced Deinococcus Radiodurans Proline
Dehydrogenase
Length = 312
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 17 RPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNF 66
RPN VK AY +PD K D + ++ + + +L +GN+
Sbjct: 185 RPNIRMVKGAYLEPATVAYPD------KADVDQNYRRL--VFQHLKAGNY 226
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 22 QVKAAYKRKVWECHPDLFP 40
Q+ A +K + ECHPD P
Sbjct: 36 QILAEFKVRALECHPDKHP 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,166,638
Number of Sequences: 62578
Number of extensions: 64653
Number of successful extensions: 137
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 15
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)