Query 035755
Match_columns 72
No_of_seqs 120 out of 1031
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:06:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 1.1E-27 2.4E-32 160.0 7.3 66 1-70 1-66 (371)
2 KOG0713 Molecular chaperone (D 99.9 1.2E-25 2.7E-30 147.9 7.0 65 2-70 14-78 (336)
3 PRK14296 chaperone protein Dna 99.9 7.5E-24 1.6E-28 142.2 6.9 64 1-69 1-64 (372)
4 PRK14288 chaperone protein Dna 99.9 1.1E-23 2.5E-28 141.2 6.8 63 3-69 2-64 (369)
5 PRK14286 chaperone protein Dna 99.9 4.5E-23 9.7E-28 138.4 7.0 65 1-69 1-65 (372)
6 PRK14279 chaperone protein Dna 99.9 1.1E-22 2.3E-27 137.4 7.2 63 3-69 8-70 (392)
7 PRK14287 chaperone protein Dna 99.9 2.2E-22 4.8E-27 135.1 7.1 64 1-69 1-64 (371)
8 PRK14282 chaperone protein Dna 99.9 2.5E-22 5.5E-27 134.6 7.0 66 1-69 1-66 (369)
9 PRK14294 chaperone protein Dna 99.9 3.1E-22 6.7E-27 134.1 7.1 65 1-69 1-65 (366)
10 PRK14301 chaperone protein Dna 99.9 3.6E-22 7.8E-27 134.1 7.3 66 1-70 1-66 (373)
11 PRK14276 chaperone protein Dna 99.9 3.1E-22 6.7E-27 134.7 6.7 64 1-69 1-64 (380)
12 PRK14299 chaperone protein Dna 99.9 3.8E-22 8.3E-27 130.4 6.9 64 1-69 1-64 (291)
13 PRK14285 chaperone protein Dna 99.9 4.1E-22 8.8E-27 133.6 7.2 64 3-70 2-65 (365)
14 PRK14297 chaperone protein Dna 99.9 5.2E-22 1.1E-26 133.5 7.5 65 1-69 1-65 (380)
15 PRK14283 chaperone protein Dna 99.9 4.1E-22 8.8E-27 134.0 6.7 65 1-70 2-66 (378)
16 PRK14280 chaperone protein Dna 99.9 5.1E-22 1.1E-26 133.5 6.6 64 1-69 1-64 (376)
17 PRK14277 chaperone protein Dna 99.9 7.7E-22 1.7E-26 133.0 7.1 64 2-69 3-66 (386)
18 PF00226 DnaJ: DnaJ domain; I 99.9 9.1E-22 2E-26 103.2 5.9 61 5-68 1-61 (64)
19 smart00271 DnaJ DnaJ molecular 99.9 2.5E-21 5.3E-26 100.2 7.2 60 4-66 1-60 (60)
20 PTZ00037 DnaJ_C chaperone prot 99.9 6.2E-22 1.3E-26 134.7 6.3 62 1-70 25-86 (421)
21 PRK10767 chaperone protein Dna 99.9 1.1E-21 2.3E-26 131.6 7.2 65 1-69 1-65 (371)
22 PRK14298 chaperone protein Dna 99.9 9.3E-22 2E-26 132.3 6.9 62 3-69 4-65 (377)
23 PRK14295 chaperone protein Dna 99.9 1.1E-21 2.4E-26 132.4 7.0 63 3-69 8-70 (389)
24 PRK14278 chaperone protein Dna 99.9 1.2E-21 2.6E-26 131.8 6.7 62 3-69 2-63 (378)
25 KOG0717 Molecular chaperone (D 99.8 2.3E-21 5E-26 131.9 6.4 65 3-70 7-71 (508)
26 PRK14281 chaperone protein Dna 99.8 3.3E-21 7.1E-26 130.3 7.0 63 3-69 2-64 (397)
27 PRK14291 chaperone protein Dna 99.8 2.8E-21 6.1E-26 130.1 6.5 62 3-69 2-63 (382)
28 KOG0712 Molecular chaperone (D 99.8 2.3E-21 5E-26 128.4 6.0 62 2-70 2-63 (337)
29 PRK14289 chaperone protein Dna 99.8 4.7E-21 1E-25 129.1 7.2 66 1-70 2-68 (386)
30 PRK10266 curved DNA-binding pr 99.8 3.9E-21 8.4E-26 126.3 6.4 63 1-68 1-63 (306)
31 cd06257 DnaJ DnaJ domain or J- 99.8 1.4E-20 3E-25 95.8 7.0 55 5-63 1-55 (55)
32 PRK14284 chaperone protein Dna 99.8 5.2E-21 1.1E-25 129.1 6.9 62 4-69 1-62 (391)
33 KOG0716 Molecular chaperone (D 99.8 5.8E-21 1.3E-25 123.0 6.5 63 4-70 31-93 (279)
34 PRK14290 chaperone protein Dna 99.8 1.4E-20 3E-25 126.1 7.1 64 3-69 2-65 (365)
35 PRK14300 chaperone protein Dna 99.8 1.6E-20 3.4E-25 126.1 6.5 61 4-69 3-63 (372)
36 KOG0691 Molecular chaperone (D 99.8 2.8E-20 6E-25 121.9 6.8 61 3-67 4-64 (296)
37 TIGR02349 DnaJ_bact chaperone 99.8 2.7E-20 5.8E-25 124.2 6.5 60 5-69 1-60 (354)
38 PRK14293 chaperone protein Dna 99.8 3.7E-20 8E-25 124.4 6.3 61 3-68 2-62 (374)
39 PRK14292 chaperone protein Dna 99.8 5.8E-20 1.3E-24 123.3 7.0 61 4-69 2-62 (371)
40 KOG0718 Molecular chaperone (D 99.8 5.5E-20 1.2E-24 125.6 5.7 67 3-71 8-75 (546)
41 KOG0715 Molecular chaperone (D 99.8 7.9E-20 1.7E-24 119.6 6.2 62 2-68 41-102 (288)
42 PRK00294 hscB co-chaperone Hsc 99.8 2.6E-19 5.6E-24 110.1 7.0 72 1-72 1-75 (173)
43 KOG0721 Molecular chaperone (D 99.8 2.8E-19 6E-24 112.5 6.3 61 3-67 98-158 (230)
44 PRK05014 hscB co-chaperone Hsc 99.8 3.8E-19 8.3E-24 109.1 6.5 68 4-71 1-71 (171)
45 PTZ00341 Ring-infected erythro 99.8 3.4E-19 7.5E-24 129.4 7.0 63 3-70 572-634 (1136)
46 PRK01356 hscB co-chaperone Hsc 99.8 3.5E-19 7.6E-24 108.9 5.6 69 4-72 2-71 (166)
47 KOG0719 Molecular chaperone (D 99.8 3E-19 6.5E-24 113.5 5.2 66 3-70 13-78 (264)
48 PRK03578 hscB co-chaperone Hsc 99.8 1.7E-18 3.7E-23 106.7 6.9 69 3-71 5-76 (176)
49 COG2214 CbpA DnaJ-class molecu 99.7 5E-18 1.1E-22 104.1 6.7 65 2-69 4-68 (237)
50 PHA03102 Small T antigen; Revi 99.7 1E-17 2.2E-22 101.3 5.8 61 3-69 4-64 (153)
51 TIGR03835 termin_org_DnaJ term 99.7 1.5E-17 3.4E-22 118.8 6.8 61 4-69 2-62 (871)
52 PTZ00100 DnaJ chaperone protei 99.7 5.2E-17 1.1E-21 94.2 6.5 54 1-62 62-115 (116)
53 PRK09430 djlA Dna-J like membr 99.7 5.5E-17 1.2E-21 105.3 6.1 61 2-64 198-263 (267)
54 PRK01773 hscB co-chaperone Hsc 99.7 1.3E-16 2.9E-21 98.1 6.5 69 4-72 2-73 (173)
55 KOG0624 dsRNA-activated protei 99.6 5.1E-16 1.1E-20 104.3 5.0 66 3-70 393-460 (504)
56 KOG0722 Molecular chaperone (D 99.6 2.4E-16 5.2E-21 101.7 3.3 63 3-70 32-94 (329)
57 KOG0720 Molecular chaperone (D 99.6 1.9E-15 4.1E-20 103.2 4.8 63 3-70 234-296 (490)
58 PHA02624 large T antigen; Prov 99.6 4.9E-15 1.1E-19 104.5 6.3 60 3-68 10-69 (647)
59 COG5407 SEC63 Preprotein trans 99.6 2.6E-15 5.7E-20 102.9 4.0 65 3-69 97-164 (610)
60 KOG0714 Molecular chaperone (D 99.5 1.5E-14 3.2E-19 92.2 4.5 64 3-69 2-65 (306)
61 KOG0550 Molecular chaperone (D 99.5 1.8E-14 3.8E-19 98.0 4.6 62 3-67 372-433 (486)
62 TIGR00714 hscB Fe-S protein as 99.5 8.8E-14 1.9E-18 84.4 5.8 55 18-72 3-60 (157)
63 KOG1150 Predicted molecular ch 99.4 3.4E-13 7.5E-18 84.6 5.2 59 5-66 54-112 (250)
64 COG5269 ZUO1 Ribosome-associat 99.2 1.8E-11 3.9E-16 80.1 4.4 67 4-70 43-110 (379)
65 KOG0568 Molecular chaperone (D 99.0 5.6E-10 1.2E-14 71.9 5.4 54 4-62 47-101 (342)
66 KOG1789 Endocytosis protein RM 99.0 8.1E-10 1.8E-14 82.5 6.0 58 1-63 1278-1337(2235)
67 KOG0723 Molecular chaperone (D 99.0 2.6E-09 5.6E-14 61.1 5.6 56 1-64 53-108 (112)
68 KOG3192 Mitochondrial J-type c 98.6 5.4E-08 1.2E-12 59.1 4.5 70 2-71 6-78 (168)
69 KOG0431 Auxilin-like protein a 98.0 1.5E-05 3.3E-10 55.4 5.0 47 17-63 399-450 (453)
70 COG1076 DjlA DnaJ-domain-conta 97.9 1.1E-05 2.3E-10 49.7 3.1 56 4-61 113-173 (174)
71 PF03656 Pam16: Pam16; InterP 97.8 9.3E-05 2E-09 43.7 5.5 55 1-63 55-109 (127)
72 COG1076 DjlA DnaJ-domain-conta 97.7 1.3E-05 2.8E-10 49.3 0.9 66 5-70 2-70 (174)
73 PF13446 RPT: A repeated domai 97.1 0.0022 4.7E-08 33.1 4.9 30 1-32 2-31 (62)
74 PF14687 DUF4460: Domain of un 93.6 0.24 5.3E-06 28.6 4.5 47 19-65 7-55 (112)
75 PF11833 DUF3353: Protein of u 92.0 0.44 9.5E-06 30.0 4.5 38 13-62 1-38 (194)
76 KOG0724 Zuotin and related mol 91.6 0.27 5.9E-06 32.8 3.4 47 19-65 5-53 (335)
77 KOG3442 Uncharacterized conser 89.3 0.74 1.6E-05 27.3 3.4 39 1-41 56-94 (132)
78 COG5552 Uncharacterized conser 88.0 2.9 6.3E-05 22.8 5.7 38 3-42 2-39 (88)
79 PF10041 DUF2277: Uncharacteri 85.4 4.3 9.3E-05 22.1 6.4 59 3-63 2-61 (78)
80 PRK14102 nifW nitrogenase stab 80.1 9.1 0.0002 22.0 5.1 61 2-62 13-76 (105)
81 KOG3960 Myogenic helix-loop-he 78.4 2 4.3E-05 28.5 2.2 20 49-68 128-152 (284)
82 PF07709 SRR: Seven Residue Re 77.5 1.7 3.6E-05 15.9 1.0 13 50-62 2-14 (14)
83 PF03206 NifW: Nitrogen fixati 76.7 12 0.00026 21.5 5.2 59 2-62 13-75 (105)
84 cd01388 SOX-TCF_HMG-box SOX-TC 71.8 6.1 0.00013 20.4 2.7 39 24-69 13-51 (72)
85 PF08447 PAS_3: PAS fold; Int 69.4 2.1 4.5E-05 22.3 0.5 30 4-39 6-36 (91)
86 cd01390 HMGB-UBF_HMG-box HMGB- 68.1 7.7 0.00017 19.2 2.5 38 25-69 13-50 (66)
87 cd01389 MATA_HMG-box MATA_HMG- 65.0 10 0.00022 19.8 2.7 40 23-69 12-51 (77)
88 cd00084 HMG-box High Mobility 62.3 12 0.00025 18.3 2.6 40 23-69 11-50 (66)
89 PF15178 TOM_sub5: Mitochondri 56.3 24 0.00053 17.4 3.0 24 7-32 2-25 (51)
90 KOG0527 HMG-box transcription 55.0 19 0.0004 24.7 3.2 35 28-69 78-112 (331)
91 PRK00810 nifW nitrogenase stab 53.9 42 0.00092 19.5 4.2 57 2-61 17-77 (113)
92 CHL00185 ycf59 magnesium-proto 53.8 35 0.00075 23.6 4.3 56 3-61 249-304 (351)
93 COG2879 Uncharacterized small 53.7 32 0.0007 18.0 3.5 16 26-41 27-42 (65)
94 PF00505 HMG_box: HMG (high mo 49.9 12 0.00026 18.7 1.3 39 24-69 12-50 (69)
95 cd01047 ACSF Aerobic Cyclase S 48.5 61 0.0013 22.2 4.8 57 2-61 232-288 (323)
96 PRK13654 magnesium-protoporphy 48.5 50 0.0011 22.9 4.4 56 3-61 253-308 (355)
97 smart00398 HMG high mobility g 48.4 23 0.00049 17.4 2.3 38 25-69 14-51 (70)
98 TIGR02029 AcsF magnesium-proto 47.7 52 0.0011 22.7 4.3 57 2-61 242-298 (337)
99 PF12434 Malate_DH: Malate deh 47.2 27 0.00058 15.2 2.2 17 20-36 10-26 (28)
100 PLN02508 magnesium-protoporphy 39.8 81 0.0018 21.9 4.3 54 3-59 249-302 (357)
101 cd01780 PLC_epsilon_RA Ubiquit 38.2 36 0.00079 19.1 2.1 36 2-39 9-44 (93)
102 PF11590 DNAPolymera_Pol: DNA 37.2 52 0.0011 15.7 2.3 17 46-62 25-41 (41)
103 smart00427 H2B Histone H2B. 36.7 65 0.0014 18.0 3.0 14 28-41 8-21 (89)
104 KOG2320 RAS effector RIN1 (con 34.2 71 0.0015 23.9 3.6 20 19-38 402-421 (651)
105 PF00076 RRM_1: RNA recognitio 32.5 42 0.0009 16.1 1.7 22 10-33 4-25 (70)
106 PF12725 DUF3810: Protein of u 32.3 1.6E+02 0.0035 19.9 5.8 59 4-64 82-149 (318)
107 TIGR03180 UraD_2 OHCU decarbox 32.1 1.1E+02 0.0025 18.5 3.8 30 30-59 56-104 (158)
108 PRK13798 putative OHCU decarbo 30.8 1.3E+02 0.0028 18.4 4.2 31 29-59 65-109 (166)
109 PF04282 DUF438: Family of unk 30.6 32 0.0007 18.3 1.1 26 10-37 7-32 (71)
110 PRK12547 RNA polymerase sigma 30.5 38 0.00082 19.9 1.5 31 5-37 133-163 (164)
111 PF12057 DUF3538: Domain of un 30.3 1.2E+02 0.0026 17.8 3.6 18 45-62 42-59 (120)
112 PF14893 PNMA: PNMA 30.1 48 0.001 22.7 2.1 20 8-29 22-41 (331)
113 PF14706 Tnp_DNA_bind: Transpo 30.0 85 0.0018 15.9 2.8 43 19-65 13-57 (58)
114 PF11608 Limkain-b1: Limkain b 29.9 72 0.0016 17.8 2.4 25 8-34 6-30 (90)
115 PLN00158 histone H2B; Provisio 29.8 1E+02 0.0022 18.0 3.2 15 27-41 33-47 (116)
116 PF04949 Transcrip_act: Transc 28.8 73 0.0016 19.6 2.5 23 45-67 62-84 (159)
117 COG3382 Solo B3/4 domain (OB-f 28.7 36 0.00078 22.2 1.3 19 20-38 59-77 (229)
118 cd00052 EH Eps15 homology doma 28.6 79 0.0017 15.1 2.7 27 4-30 2-28 (67)
119 PTZ00463 histone H2B; Provisio 28.3 1.3E+02 0.0028 17.7 3.4 14 28-41 35-48 (117)
120 PF06975 DUF1299: Protein of u 27.9 14 0.0003 17.8 -0.5 11 55-65 10-20 (47)
121 COG0089 RplW Ribosomal protein 27.9 55 0.0012 18.4 1.8 21 9-31 25-45 (94)
122 cd07355 HN_L-delphilin-R2_like 27.4 35 0.00076 18.6 0.9 32 26-67 23-54 (80)
123 smart00872 Alpha-mann_mid Alph 27.3 1E+02 0.0022 16.0 4.6 27 19-45 43-69 (79)
124 PF02216 B: B domain; InterPr 26.3 33 0.0007 17.4 0.6 30 5-39 12-41 (54)
125 PRK09649 RNA polymerase sigma 25.7 49 0.0011 19.9 1.5 31 5-37 151-181 (185)
126 PF04967 HTH_10: HTH DNA bindi 25.7 40 0.00086 16.8 0.9 21 8-30 31-51 (53)
127 PF09349 OHCU_decarbox: OHCU d 25.1 1.5E+02 0.0033 17.8 3.5 31 29-59 56-107 (159)
128 CHL00030 rpl23 ribosomal prote 24.8 69 0.0015 17.8 1.8 21 9-31 23-43 (93)
129 PF03820 Mtc: Tricarboxylate c 24.7 99 0.0021 21.0 2.9 21 19-39 49-69 (308)
130 PF09938 DUF2170: Uncharacteri 24.7 74 0.0016 19.2 2.0 24 2-27 97-121 (140)
131 PF10475 DUF2450: Protein of u 24.4 45 0.00097 22.0 1.2 17 49-65 198-214 (291)
132 PF04719 TAFII28: hTAFII28-lik 24.0 77 0.0017 17.6 1.9 13 18-30 78-90 (90)
133 PF14791 DNA_pol_B_thumb: DNA 23.9 33 0.00071 17.7 0.4 13 2-14 44-56 (64)
134 PRK10613 hypothetical protein; 22.9 34 0.00074 18.4 0.3 11 19-29 64-74 (74)
135 smart00362 RRM_2 RNA recogniti 22.8 98 0.0021 14.3 2.1 21 9-31 4-24 (72)
136 PF05344 DUF746: Domain of Unk 22.7 96 0.0021 16.3 2.0 31 4-37 17-47 (65)
137 PF09011 HMG_box_2: HMG-box do 22.3 74 0.0016 16.2 1.6 23 47-69 32-54 (73)
138 PF01388 ARID: ARID/BRIGHT DNA 22.2 1.4E+02 0.003 15.8 2.9 8 27-34 60-67 (92)
139 TIGR03636 L23_arch archaeal ri 22.2 86 0.0019 16.8 1.8 21 9-31 18-38 (77)
140 COG5126 FRQ1 Ca2+-binding prot 21.9 67 0.0014 19.7 1.5 29 2-30 73-101 (160)
141 KOG2072 Translation initiation 21.5 2E+02 0.0043 22.8 4.0 42 21-62 387-449 (988)
142 TIGR02293 TAS_TIGR02293 putati 21.4 93 0.002 18.1 2.0 17 54-71 78-94 (133)
143 PF10769 DUF2594: Protein of u 20.9 40 0.00086 18.1 0.3 11 19-29 64-74 (74)
144 PF07710 P53_tetramer: P53 tet 20.8 1.2E+02 0.0026 14.5 2.1 18 45-62 18-35 (42)
145 KOG3767 Sideroflexin [General 20.7 1.3E+02 0.0029 20.7 2.8 27 12-40 62-88 (328)
146 COG1725 Predicted transcriptio 20.7 54 0.0012 19.3 0.9 15 19-33 48-62 (125)
147 PF12481 DUF3700: Aluminium in 20.6 1.4E+02 0.003 19.5 2.8 13 52-64 105-117 (228)
148 PF01990 ATP-synt_F: ATP synth 20.5 83 0.0018 17.0 1.6 27 6-32 12-39 (95)
149 smart00360 RRM RNA recognition 20.4 1.1E+02 0.0024 13.9 2.2 20 10-31 2-21 (71)
150 PF00036 EF-hand_1: EF hand; 20.2 57 0.0012 13.9 0.7 23 7-29 6-28 (29)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-27 Score=160.03 Aligned_cols=66 Identities=30% Similarity=0.424 Sum_probs=62.1
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
|..+|||+||||+.+| |.+|||+|||+|+++||||+++.+ ++|+++|++|++||+|||||++|.-|
T Consensus 1 ~~~~dyYeiLGV~k~A--s~~EIKkAYRkLA~kyHPD~n~g~--~~AeeKFKEI~eAYEVLsD~eKRa~Y 66 (371)
T COG0484 1 MAKRDYYEILGVSKDA--SEEEIKKAYRKLAKKYHPDRNPGD--KEAEEKFKEINEAYEVLSDPEKRAAY 66 (371)
T ss_pred CCccchhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 6689999999999999 999999999999999999999964 89999999999999999999999544
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-25 Score=147.93 Aligned_cols=65 Identities=32% Similarity=0.485 Sum_probs=61.5
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
..+|||+||||+.+| +..+||+|||+|++++|||++|++ |.|.+.|+.|+.||+|||||.+|..|
T Consensus 14 ~~rDfYelLgV~k~A--sd~eIKkAYRKLALk~HPDkNpdd--p~A~e~F~~in~AYEVLsDpekRk~Y 78 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNA--SDQEIKKAYRKLALKYHPDKNPDD--PNANEKFKEINAAYEVLSDPEKRKHY 78 (336)
T ss_pred cCCCHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 458999999999999 999999999999999999999998 99999999999999999999998543
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=7.5e-24 Score=142.21 Aligned_cols=64 Identities=27% Similarity=0.373 Sum_probs=59.7
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|..+|||+||||+++| +.++||+|||+++++||||+++. +.++++|++|++||+||+||.+|.-
T Consensus 1 m~~~dyY~~Lgv~~~a--~~~eik~ayrkla~~~HPD~n~~---~~a~~~F~~i~~AyevLsD~~KR~~ 64 (372)
T PRK14296 1 MKKKDYYEVLGVSKTA--SEQEIRQAYRKLAKQYHPDLNKS---PDAHDKMVEINEAADVLLDKDKRKQ 64 (372)
T ss_pred CCCCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---chHHHHHHHHHHHHHHhcCHHHhhh
Confidence 6778999999999999 99999999999999999999875 6789999999999999999999843
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=1.1e-23 Score=141.20 Aligned_cols=63 Identities=30% Similarity=0.390 Sum_probs=58.4
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..|||+||||+++| |.++||+|||+++++||||+++.+ +.++++|++|++||+||+||.+|.-
T Consensus 2 ~~dyY~vLgv~~~A--s~~eIkkayrkla~k~HPD~~~~~--~~a~~~f~~i~~AYevLsd~~kR~~ 64 (369)
T PRK14288 2 ELSYYEILEVEKHS--NQETIKKSYRKLALKYHPDRNAGD--KEAEEKFKLINEAYGVLSDEKKRAL 64 (369)
T ss_pred CCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc--cHHHHHHHHHHHHHHHhccHHHHHH
Confidence 47999999999999 999999999999999999999754 6789999999999999999998843
No 5
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=4.5e-23 Score=138.44 Aligned_cols=65 Identities=28% Similarity=0.380 Sum_probs=60.3
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|...|||+||||+++| +.++||+|||+++++||||+++.+ +.++++|++|++||+||+||.+|.-
T Consensus 1 ~~~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~ 65 (372)
T PRK14286 1 MSERSYYDILGVSKSA--NDEEIKSAYRKLAIKYHPDKNKGN--KESEEKFKEATEAYEILRDPKKRQA 65 (372)
T ss_pred CCCCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHH
Confidence 6778999999999999 999999999999999999998764 6789999999999999999998843
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.1e-22 Score=137.41 Aligned_cols=63 Identities=30% Similarity=0.370 Sum_probs=58.7
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+|||+||||+++| +.++||+|||+++++||||+++.+ +.++++|++|++||++|+||.+|.-
T Consensus 8 ~~Dyy~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vLsD~~KR~~ 70 (392)
T PRK14279 8 EKDFYKELGVSSDA--SAEEIKKAYRKLARELHPDANPGD--PAAEERFKAVSEAHDVLSDPAKRKE 70 (392)
T ss_pred ccCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhcchhhhhH
Confidence 47999999999999 999999999999999999999864 6789999999999999999999943
No 7
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.2e-22 Score=135.07 Aligned_cols=64 Identities=33% Similarity=0.463 Sum_probs=59.3
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|...|||+||||+++| +.++||+|||+++++||||+++. +.++++|+.|++||++|+||.+|..
T Consensus 1 ~~~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~---~~~~~~f~~i~~Ay~~L~d~~kR~~ 64 (371)
T PRK14287 1 MSKRDYYEVLGVDRNA--SVDEVKKAYRKLARKYHPDVNKA---PDAEDKFKEVKEAYDTLSDPQKKAH 64 (371)
T ss_pred CCCCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCcHhHHHH
Confidence 6678999999999999 99999999999999999999875 6788999999999999999998844
No 8
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.5e-22 Score=134.64 Aligned_cols=66 Identities=36% Similarity=0.510 Sum_probs=60.0
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|...|||+||||+++| +.++||+|||+++++||||+++.+ .+.++++|++|++||++|+||.+|.-
T Consensus 1 ~~~~d~y~~lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~ 66 (369)
T PRK14282 1 REKKDYYEILGVSRNA--TQEEIKRAYKRLVKEWHPDRHPEN-RKEAEQKFKEIQEAYEVLSDPQKRAM 66 (369)
T ss_pred CCCCChHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCccc-hhHHHHHHHHHHHHHHHhcChhhHHH
Confidence 6778999999999999 999999999999999999998753 25689999999999999999999843
No 9
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3.1e-22 Score=134.11 Aligned_cols=65 Identities=26% Similarity=0.386 Sum_probs=60.5
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|+.+|||+||||++++ +.++||++||+++++||||+++.+ +.++++|+.|++||++|+||.+|..
T Consensus 1 ~~~~d~y~~lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~~~~~f~~~~~Ay~vL~d~~~r~~ 65 (366)
T PRK14294 1 MVKRDYYEILGVTRDA--SEEEIKKSYRKLAMKYHPDRNPGD--KEAEELFKEAAEAYEVLSDPKKRGI 65 (366)
T ss_pred CCCCChHHHhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHH
Confidence 7789999999999999 999999999999999999999864 6789999999999999999998843
No 10
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3.6e-22 Score=134.12 Aligned_cols=66 Identities=29% Similarity=0.424 Sum_probs=60.5
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
|...|||+||||++++ +.++||+|||++++++|||+++++ ++++++|++|++||++|+||.+|..+
T Consensus 1 ~~~~~~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~y 66 (373)
T PRK14301 1 MSQRDYYEVLGVSRDA--SEDEIKKAYRKLALQYHPDRNPDN--PEAEQKFKEAAEAYEVLRDAEKRARY 66 (373)
T ss_pred CCCCChHHhcCCCCCC--CHHHHHHHHHHHHHHhCCCcCCCC--hHHHHHHHHHHHHHHHhcchhhhhhh
Confidence 5678999999999999 999999999999999999999864 67899999999999999999988443
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3.1e-22 Score=134.66 Aligned_cols=64 Identities=28% Similarity=0.383 Sum_probs=59.4
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|..+|||+||||+++| +.++||+|||+++++||||+++. +.++++|++|++||++|+||.+|.-
T Consensus 1 ~~~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kR~~ 64 (380)
T PRK14276 1 MNNTEYYDRLGVSKDA--SQDEIKKAYRKLSKKYHPDINKE---PGAEEKYKEVQEAYETLSDPQKRAA 64 (380)
T ss_pred CCCCCHHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhcCHhhhhh
Confidence 6678999999999999 99999999999999999999875 5788999999999999999998843
No 12
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=3.8e-22 Score=130.39 Aligned_cols=64 Identities=34% Similarity=0.493 Sum_probs=59.3
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|...|||+||||++++ +.++||++||++++++|||+++. +.++++|+.|++||++|+||.+|..
T Consensus 1 m~~~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~kr~~ 64 (291)
T PRK14299 1 MAYKDYYAILGVPKNA--SQDEIKKAFKKLARKYHPDVNKS---PGAEEKFKEINEAYTVLSDPEKRRI 64 (291)
T ss_pred CCCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6678999999999999 99999999999999999999875 6789999999999999999998843
No 13
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=4.1e-22 Score=133.57 Aligned_cols=64 Identities=28% Similarity=0.393 Sum_probs=58.9
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
.+|||+||||+++| +.++||+|||+++++||||+++.+ +.++++|++|++||++|+||.+|..+
T Consensus 2 ~~d~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~y 65 (365)
T PRK14285 2 KRDYYEILGLSKGA--SKDEIKKAYRKIAIKYHPDKNKGN--KEAESIFKEATEAYEVLIDDNKRAQY 65 (365)
T ss_pred CCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHcCcchhHHH
Confidence 47999999999999 999999999999999999998764 67889999999999999999988443
No 14
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=5.2e-22 Score=133.53 Aligned_cols=65 Identities=28% Similarity=0.396 Sum_probs=60.1
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|...|||+||||++++ +.++||++||+++++||||+++.+ +.++++|+.|++||++|+||.+|..
T Consensus 1 ~~~~d~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~ 65 (380)
T PRK14297 1 MASKDYYEVLGLEKGA--SDDEIKKAFRKLAIKYHPDKNKGN--KEAEEKFKEINEAYQVLSDPQKKAQ 65 (380)
T ss_pred CCCCChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcCHhhhCc
Confidence 5668999999999999 999999999999999999999864 6789999999999999999998853
No 15
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=4.1e-22 Score=133.99 Aligned_cols=65 Identities=31% Similarity=0.409 Sum_probs=59.8
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
|...|||+||||+++| +.+|||++||+++++||||+++. +.++++|++|++||++|+||.+|..+
T Consensus 2 ~~~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~Y 66 (378)
T PRK14283 2 AEKRDYYEVLGVDRNA--DKKEIKKAYRKLARKYHPDVSEE---EGAEEKFKEISEAYAVLSDDEKRQRY 66 (378)
T ss_pred CCcCChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhchhHHHHHH
Confidence 4578999999999999 99999999999999999999875 67899999999999999999988543
No 16
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=5.1e-22 Score=133.46 Aligned_cols=64 Identities=30% Similarity=0.413 Sum_probs=59.5
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|...|||+||||++++ +.++||++||+++++||||+++. +.++++|++|++||++|+||.+|.-
T Consensus 1 ~~~~~~y~iLgv~~~a--~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kr~~ 64 (376)
T PRK14280 1 MAKRDYYEVLGVSKSA--SKDEIKKAYRKLSKKYHPDINKE---EGADEKFKEISEAYEVLSDDQKRAQ 64 (376)
T ss_pred CCCCChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhccHhHHHH
Confidence 6678999999999999 99999999999999999999875 5689999999999999999998843
No 17
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=7.7e-22 Score=132.97 Aligned_cols=64 Identities=34% Similarity=0.470 Sum_probs=58.9
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
...|||+||||++++ +.++||+|||+++++||||+++.+ +.++++|++|++||++|+||.+|.-
T Consensus 3 ~~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~ 66 (386)
T PRK14277 3 AKKDYYEILGVDRNA--TEEEIKKAYRRLAKKYHPDLNPGD--KEAEQKFKEINEAYEILSDPQKRAQ 66 (386)
T ss_pred CCCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 357999999999999 999999999999999999999864 6789999999999999999998843
No 18
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.86 E-value=9.1e-22 Score=103.19 Aligned_cols=61 Identities=33% Similarity=0.518 Sum_probs=56.4
Q ss_pred chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
|||+||||++++ +.++|+++|+++++++|||+++... ..+++.|..|++||++|++|.+|.
T Consensus 1 ~~y~iLgl~~~~--~~~eik~~y~~l~~~~HPD~~~~~~-~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDA--SDEEIKKAYRRLSKQYHPDKNSGDE-AEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTS--SHHHHHHHHHHHHHHTSTTTGTSTH-HHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCC--CHHHHHHHHHhhhhccccccchhhh-hhhhHHHHHHHHHHHHhCCHHHHH
Confidence 699999999999 9999999999999999999988752 468999999999999999999874
No 19
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.86 E-value=2.5e-21 Score=100.18 Aligned_cols=60 Identities=35% Similarity=0.543 Sum_probs=55.1
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhc
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNF 66 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~ 66 (72)
+|||+||||++++ +.++|+++|+++++.+|||++++. .+.+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~--~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDA--SLDEIKKAYRKLALKYHPDKNPGD-KEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHHHcCCCC
Confidence 4899999999999 999999999999999999999863 37889999999999999999853
No 20
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.86 E-value=6.2e-22 Score=134.71 Aligned_cols=62 Identities=26% Similarity=0.341 Sum_probs=56.1
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
|...|||+||||+++| +.++||+|||+++++||||+++. .++|++|++||++|+||.+|..|
T Consensus 25 ~~~~d~Y~vLGV~~~A--s~~eIKkAYrkla~k~HPDk~~~------~e~F~~i~~AYevLsD~~kR~~Y 86 (421)
T PTZ00037 25 VDNEKLYEVLNLSKDC--TTSEIKKAYRKLAIKHHPDKGGD------PEKFKEISRAYEVLSDPEKRKIY 86 (421)
T ss_pred ccchhHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHHHhccHHHHHHH
Confidence 3568999999999999 99999999999999999999753 37999999999999999998543
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1.1e-21 Score=131.60 Aligned_cols=65 Identities=32% Similarity=0.451 Sum_probs=60.0
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|...|||+||||+++| +.++||++||++++++|||+++.+ +.++++|++|++||++|+||.+|.-
T Consensus 1 ~~~~d~y~iLgv~~~a--s~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~r~~ 65 (371)
T PRK10767 1 MAKRDYYEVLGVSRNA--SEDEIKKAYRKLAMKYHPDRNPGD--KEAEEKFKEIKEAYEVLSDPQKRAA 65 (371)
T ss_pred CCCCChHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc--HHHHHHHHHHHHHHHHhcchhhhhH
Confidence 6678999999999999 999999999999999999998764 6788999999999999999998843
No 22
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=9.3e-22 Score=132.30 Aligned_cols=62 Identities=32% Similarity=0.454 Sum_probs=57.9
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+|||+||||++++ +.++||++||++++++|||+++. +.++++|++|++||++|+||.+|.-
T Consensus 4 ~~d~y~iLgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~kR~~ 65 (377)
T PRK14298 4 TRDYYEILGLSKDA--SVEDIKKAYRKLAMKYHPDKNKE---PDAEEKFKEISEAYAVLSDAEKRAQ 65 (377)
T ss_pred CCCHHHhhCCCCCC--CHHHHHHHHHHHHHHhCccccCC---hhHHHHHHHHHHHHHHhcchHhhhh
Confidence 68999999999999 99999999999999999999875 6788999999999999999998843
No 23
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1.1e-21 Score=132.35 Aligned_cols=63 Identities=32% Similarity=0.446 Sum_probs=58.1
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..|||+||||++++ +.++||+|||+++++||||+++.+ +.++++|+.|++||++|+||.+|..
T Consensus 8 ~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~ 70 (389)
T PRK14295 8 EKDYYKVLGVPKDA--TEAEIKKAYRKLAREYHPDANKGD--AKAEERFKEISEAYDVLSDEKKRKE 70 (389)
T ss_pred ccCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc--hhHHHHHHHHHHHHHHHCchhhHHH
Confidence 46999999999999 999999999999999999998764 6789999999999999999998843
No 24
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.2e-21 Score=131.83 Aligned_cols=62 Identities=34% Similarity=0.475 Sum_probs=57.8
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+|||+||||+++| +.++||+|||+++++||||+++. +.++++|+.|++||++|+||.+|.-
T Consensus 2 ~~d~y~iLgv~~~a--~~~eik~ayr~la~~~hpD~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~ 63 (378)
T PRK14278 2 ARDYYGLLGVSRNA--SDAEIKRAYRKLARELHPDVNPD---EEAQEKFKEISVAYEVLSDPEKRRI 63 (378)
T ss_pred CCCcceecCCCCCC--CHHHHHHHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHHHHhchhhhhhh
Confidence 37999999999999 99999999999999999999985 6789999999999999999998843
No 25
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.3e-21 Score=131.89 Aligned_cols=65 Identities=23% Similarity=0.366 Sum_probs=60.7
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
-++||+||||..++ +..+||++||+++++||||++|.. ..++++.|+.|+.||+|||||..|.|+
T Consensus 7 ~~c~YE~L~v~~~a--~d~eik~~YRklALq~HPDknpd~-ieeat~~F~~i~aAYeVLSdp~eR~wy 71 (508)
T KOG0717|consen 7 KRCYYEVLGVERDA--DDDEIKKNYRKLALQYHPDKNPDR-IEEATQQFQLIQAAYEVLSDPQERAWY 71 (508)
T ss_pred hhHHHHHhcccccC--CHHHHHHHHHHHHHhhCCCCCCcc-HHHHHHHHHHHHHHHHHhcChHhhhhH
Confidence 36899999999999 999999999999999999998764 378999999999999999999999987
No 26
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.3e-21 Score=130.33 Aligned_cols=63 Identities=27% Similarity=0.433 Sum_probs=58.2
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..|||+||||++++ +.++||++||++++++|||+++.+ +.++++|+.|++||++|+||.+|..
T Consensus 2 ~~d~y~iLgv~~~a--~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~ 64 (397)
T PRK14281 2 KRDYYEVLGVSRSA--DKDEIKKAYRKLALKYHPDKNPDN--KEAEEHFKEVNEAYEVLSNDDKRRR 64 (397)
T ss_pred CCChhhhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 47999999999999 999999999999999999999864 6788999999999999999998843
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=2.8e-21 Score=130.10 Aligned_cols=62 Identities=32% Similarity=0.471 Sum_probs=57.7
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+|||+||||++++ +.++||+|||++++++|||+++. +.++++|+.|++||++|+||.+|..
T Consensus 2 ~~d~Y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vLsd~~kR~~ 63 (382)
T PRK14291 2 KKDYYEILGVSRNA--TQEEIKKAYRRLARKYHPDFNKN---PEAEEKFKEINEAYQVLSDPEKRKL 63 (382)
T ss_pred CCCHHHhhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhcCHHHHHH
Confidence 47999999999999 99999999999999999999876 6788999999999999999998843
No 28
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.3e-21 Score=128.45 Aligned_cols=62 Identities=31% Similarity=0.467 Sum_probs=57.4
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
....+|.||||+++| +.+|||++||+++++|||||++. +.++|++|++||+|||||.+|..+
T Consensus 2 ~~~~~y~il~v~~~A--s~~eikkayrkla~k~HpDkn~~-----~~ekfkei~~AyevLsd~ekr~~y 63 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDA--SEEEIKKAYRKLALKYHPDKNPD-----AGEKFKEISQAYEVLSDPEKREIY 63 (337)
T ss_pred cccccceeeccCCCc--CHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHhcCHHHHHHH
Confidence 457899999999999 99999999999999999999987 579999999999999999999544
No 29
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.7e-21 Score=129.12 Aligned_cols=66 Identities=29% Similarity=0.459 Sum_probs=60.5
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc-hh
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL-FT 70 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~-~~ 70 (72)
|+..|||++|||++++ +.+||+++||++++++|||+++.+ +.++++|+.|++||++|+||.+|. |+
T Consensus 2 ~~~~~~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~yD 68 (386)
T PRK14289 2 AEKRDYYEVLGVSKTA--TVDEIKKAYRKKAIQYHPDKNPGD--KEAEEKFKEAAEAYDVLSDPDKRSRYD 68 (386)
T ss_pred CccCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4568999999999999 999999999999999999999864 678999999999999999999885 54
No 30
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.84 E-value=3.9e-21 Score=126.34 Aligned_cols=63 Identities=29% Similarity=0.489 Sum_probs=58.9
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
|+..|||+||||++++ +.++||++||++++++|||+++. +.++++|++|++||++|+||.+|.
T Consensus 1 ~~~~d~y~~Lgv~~~a--~~~eik~ayr~la~k~HPD~~~~---~~~~~~f~~i~~Ay~~L~~~~kr~ 63 (306)
T PRK10266 1 MELKDYYAIMGVKPTD--DLKTIKTAYRRLARKYHPDVSKE---PDAEARFKEVAEAWEVLSDEQRRA 63 (306)
T ss_pred CCcCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhhhHHHHH
Confidence 6778999999999999 99999999999999999999765 578999999999999999999884
No 31
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.84 E-value=1.4e-20 Score=95.77 Aligned_cols=55 Identities=38% Similarity=0.650 Sum_probs=51.8
Q ss_pred chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 035755 5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLS 63 (72)
Q Consensus 5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d 63 (72)
|||+||||++++ +.++|+++|+++++++|||+.++. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~--~~~~ik~~y~~l~~~~HPD~~~~~--~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDA--SDEEIKKAYRKLALKYHPDKNPDD--PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcC
Confidence 699999999999 999999999999999999999875 6788999999999999986
No 32
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.2e-21 Score=129.11 Aligned_cols=62 Identities=29% Similarity=0.439 Sum_probs=57.7
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.|||+||||++++ +.++||++||+++++||||+++++ +.++++|+.|++||++|+||.+|.-
T Consensus 1 ~d~y~iLgv~~~a--~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~ 62 (391)
T PRK14284 1 MDYYTILGVSKTA--SPEEIKKAYRKLAVKYHPDKNPGD--AEAEKRFKEVSEAYEVLSDAQKRES 62 (391)
T ss_pred CCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3899999999999 999999999999999999999864 6789999999999999999998843
No 33
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.8e-21 Score=123.05 Aligned_cols=63 Identities=27% Similarity=0.380 Sum_probs=59.9
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
.|+|.||||++++ +.++||++||++++++|||+++++ |++..+|+.||+||+||+||.+|.++
T Consensus 31 ~~LYdVLgl~k~a--t~d~IKKaYR~L~~k~HPD~~gd~--P~~~dkf~eIN~Ay~ILsD~~kR~~Y 93 (279)
T KOG0716|consen 31 LDLYDVLGLPKTA--TKDEIKKAYRKLALKYHPDKNGDN--PEATDKFKEINTAYAILSDPTKRNVY 93 (279)
T ss_pred hHHHHHhCCCccc--chHHHHHHHHHHHHHhCCCcCCCC--chhHHHHHHHHHHHHHhcChhhhhhH
Confidence 5799999999999 999999999999999999999987 89999999999999999999999765
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.4e-20 Score=126.13 Aligned_cols=64 Identities=34% Similarity=0.474 Sum_probs=58.0
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..|||+||||+++| +.++|+++||++++++|||+++.+ ...++++|+.|++||++|+||.+|..
T Consensus 2 ~~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~~L~d~~~r~~ 65 (365)
T PRK14290 2 AKDYYKILGVDRNA--SQEDIKKAFRELAKKWHPDLHPGN-KAEAEEKFKEISEAYEVLSDPQKRRQ 65 (365)
T ss_pred CCChhhhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-hhHHHHHHHHHHHHHHHhcChhhhhh
Confidence 47999999999999 999999999999999999998764 24789999999999999999998843
No 35
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.6e-20 Score=126.14 Aligned_cols=61 Identities=30% Similarity=0.398 Sum_probs=56.7
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.|||+||||++++ +.++||++||++++++|||+++. +.++++|++|++||++|+|+.+|.-
T Consensus 3 ~~~y~iLgv~~~a--s~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~ 63 (372)
T PRK14300 3 QDYYQILGVSKTA--SQADLKKAYLKLAKQYHPDTTDA---KDAEKKFKEINAAYDVLKDEQKRAA 63 (372)
T ss_pred CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhhhHhHhhH
Confidence 7999999999999 99999999999999999999874 5688899999999999999998843
No 36
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.8e-20 Score=121.88 Aligned_cols=61 Identities=31% Similarity=0.498 Sum_probs=58.8
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhcc
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH 67 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R 67 (72)
..|||.||||++++ +..+|+++|+..+++||||++|++ |.|.++|+.+.+||+||+|+..|
T Consensus 4 ~~dyY~lLgi~~~a--t~~eIkKaYr~kaL~~HPDKNp~d--P~A~ekFq~L~eAy~VL~D~~~R 64 (296)
T KOG0691|consen 4 DTDYYDLLGISEDA--TDAEIKKAYRKKALQYHPDKNPGD--PQAAEKFQELSEAYEVLSDEESR 64 (296)
T ss_pred cchHHHHhCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHHH
Confidence 57999999999999 999999999999999999999998 77999999999999999999988
No 37
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.82 E-value=2.7e-20 Score=124.16 Aligned_cols=60 Identities=30% Similarity=0.416 Sum_probs=55.9
Q ss_pred chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|||+||||++++ +.++||++||++++++|||+++. +.++++|+.|++||++|+|+.+|..
T Consensus 1 d~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~~R~~ 60 (354)
T TIGR02349 1 DYYEILGVSKDA--SEEEIKKAYRKLAKKYHPDRNKD---KEAEEKFKEINEAYEVLSDPEKRAQ 60 (354)
T ss_pred ChHHhCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhhChHHHHh
Confidence 799999999999 99999999999999999999874 6788999999999999999998843
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.7e-20 Score=124.40 Aligned_cols=61 Identities=28% Similarity=0.443 Sum_probs=56.8
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
..|||+||||++++ +.++|+++||++++++|||+++. +.++++|+.|++||++|+||.+|.
T Consensus 2 ~~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~vL~~~~~R~ 62 (374)
T PRK14293 2 AADYYEILGVSRDA--DKDELKRAYRRLARKYHPDVNKE---PGAEDRFKEINRAYEVLSDPETRA 62 (374)
T ss_pred CCChhhhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC---cCHHHHHHHHHHHHHHHhchHHHH
Confidence 47999999999999 99999999999999999999875 568899999999999999999884
No 39
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.8e-20 Score=123.27 Aligned_cols=61 Identities=30% Similarity=0.414 Sum_probs=57.0
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.|||+||||++++ +.++||++||++++++|||+++. +.++++|+.|++||++|+||.+|..
T Consensus 2 ~d~y~~Lgv~~~a--~~~~ik~ayr~l~~~~hpD~~~~---~~a~~~~~~i~~Ay~vL~d~~~r~~ 62 (371)
T PRK14292 2 MDYYELLGVSRTA--SADEIKSAYRKLALKYHPDRNKE---KGAAEKFAQINEAYAVLSDAEKRAH 62 (371)
T ss_pred CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC---hhHHHHHHHHHHHHHHhcchhhhhh
Confidence 5899999999999 99999999999999999999975 6789999999999999999998843
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.5e-20 Score=125.56 Aligned_cols=67 Identities=30% Similarity=0.372 Sum_probs=61.3
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CCCchHHHHHHHHHHHHHHHhcChhccchhc
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFP-VGRKTDAESKFKLISEAYTYLLSGNFHLFTF 71 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~-~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~~ 71 (72)
..|+|.+|+|+++| +.+||+++||++++.|||||+- ++.+..|++.|++|.+||+||+||.+|..+.
T Consensus 8 e~e~Ya~LNlpkdA--t~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD 75 (546)
T KOG0718|consen 8 EIELYALLNLPKDA--TDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYD 75 (546)
T ss_pred hhhHHHHhCCCccc--CHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 45999999999999 9999999999999999999987 4556889999999999999999999996553
No 41
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.9e-20 Score=119.57 Aligned_cols=62 Identities=31% Similarity=0.439 Sum_probs=58.2
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
...|||+||||+.++ +..|||++|++|++++|||.+.. +.+.++|++|.+||++|+|+.+|.
T Consensus 41 ~~~d~Y~vLgv~~~A--t~~EIK~Af~~LaKkyHPD~n~~---~~a~~kF~eI~~AYEiLsd~eKR~ 102 (288)
T KOG0715|consen 41 SKEDYYKVLGVSRNA--TLSEIKSAFRKLAKKYHPDVNKD---KEASKKFKEISEAYEILSDEEKRQ 102 (288)
T ss_pred CCcchhhhhCcCCCC--CHHHHHHHHHHHHHhhCCCCCCC---cchhhHHHHHHHHHHHhcCHHHHH
Confidence 345999999999999 99999999999999999999998 589999999999999999999884
No 42
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.79 E-value=2.6e-19 Score=110.08 Aligned_cols=72 Identities=25% Similarity=0.261 Sum_probs=62.9
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchhcC
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFTFL 72 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~~~ 72 (72)
|...|||++|||++...++..+|+++||++++++|||++++.. +..+.+.+..||+||++|+||.+|.-++|
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 5678999999999998889999999999999999999987642 34477889999999999999999976653
No 43
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.8e-19 Score=112.48 Aligned_cols=61 Identities=28% Similarity=0.440 Sum_probs=56.6
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhcc
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH 67 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R 67 (72)
.-|+||||||++++ +..|||++||+|++++||||+++. .+.++.|..|++||+.|+|+..|
T Consensus 98 ~fDPyEILGl~pga--s~~eIKkaYR~LSik~HPDK~~~~--~~~e~~~~~I~KAY~aLTD~~sr 158 (230)
T KOG0721|consen 98 KFDPYEILGLDPGA--SEKEIKKAYRRLSIKYHPDKQPPE--EGDEEFFEAIAKAYQALTDKKSR 158 (230)
T ss_pred cCCcHHhhCCCCCC--CHHHHHHHHHHhhhhhCCCcCCCc--chhHHHHHHHHHHHHHhcchhhH
Confidence 46999999999999 999999999999999999999874 56788899999999999999887
No 44
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.78 E-value=3.8e-19 Score=109.14 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=58.1
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchhc
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFTF 71 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~~ 71 (72)
.|||++|||++...++..+|+++|+++++++|||+.++.. +..+.+.+..||+||++|+||.+|.-++
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yl 71 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYL 71 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHH
Confidence 3899999999986669999999999999999999986532 2346778999999999999999986554
No 45
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.78 E-value=3.4e-19 Score=129.43 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=57.8
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
..+||+||||+++| +..+||++||++++++|||++++ +.+..+|+.|++||++||||.+|..+
T Consensus 572 d~dYYdILGVs~dA--S~~EIKKAYRKLAlkyHPDKN~~---~~A~ekFq~I~EAYeVLSDp~kRk~Y 634 (1136)
T PTZ00341 572 DTLFYDILGVGVNA--DMKEISERYFKLAENYYPPKRSG---NEGFHKFKKINEAYQILGDIDKKKMY 634 (1136)
T ss_pred CCChHHHcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 47999999999999 99999999999999999999987 35788999999999999999998543
No 46
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.78 E-value=3.5e-19 Score=108.88 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=58.3
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CchHHHHHHHHHHHHHHHhcChhccchhcC
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVG-RKTDAESKFKLISEAYTYLLSGNFHLFTFL 72 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~-~~~~~~~~~~~i~~Ay~~L~d~~~R~~~~~ 72 (72)
.|||++|||+++..++..+|+++|+++++++|||+.++. .+..+.+.+..||+||++|+||.+|.-++|
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 589999999998656999999999999999999998752 123355678899999999999999976654
No 47
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3e-19 Score=113.50 Aligned_cols=66 Identities=21% Similarity=0.338 Sum_probs=60.7
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
..|+|+||||..++ +..+|+++|+++++++|||+++.....++.++|+.++.||+||+|..+|..+
T Consensus 13 ~~d~YevLGVer~a--~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~Y 78 (264)
T KOG0719|consen 13 KKDLYEVLGVERDA--TDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVY 78 (264)
T ss_pred ccCHHHHhhhcccC--CHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 35999999999999 9999999999999999999998665678999999999999999999998544
No 48
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.77 E-value=1.7e-18 Score=106.72 Aligned_cols=69 Identities=25% Similarity=0.254 Sum_probs=58.5
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchhc
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFTF 71 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~~ 71 (72)
..|||+||||++...++..+|+++|+++++++|||+++... +..+.+.+..||+||++|++|.+|.-++
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yl 76 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYL 76 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence 47999999999987679999999999999999999987532 1234556789999999999999997655
No 49
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5e-18 Score=104.08 Aligned_cols=65 Identities=35% Similarity=0.460 Sum_probs=58.9
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
...++|+||||++++ +..+|+++||++++++|||+++.+.. .+++.|..|++||++|+|+..|..
T Consensus 4 ~~~~~y~iLgv~~~a--s~~eik~ayrkla~~~HPD~~~~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~ 68 (237)
T COG2214 4 DLLDYYEILGVPPNA--SLEEIKKAYRKLALKYHPDRNPGDPK-VAEEKFKEINEAYEILSDPERRAE 68 (237)
T ss_pred hhhhHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchh-HHHHHHHHHHHHHHHhhCHHHHHH
Confidence 357999999999999 99999999999999999999998522 599999999999999999998853
No 50
>PHA03102 Small T antigen; Reviewed
Probab=99.72 E-value=1e-17 Score=101.25 Aligned_cols=61 Identities=31% Similarity=0.348 Sum_probs=54.8
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+.+|+||||++++..|..+||++||++++++|||++++ +++|+.|++||++|+++.+|.-
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~------~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD------EEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch------hHHHHHHHHHHHHHhhHHHhcc
Confidence 467899999999987799999999999999999999654 3789999999999999988853
No 51
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.72 E-value=1.5e-17 Score=118.82 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=57.0
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
+|||+||||++++ +..+||++||++++++|||+++. +.+.++|+.|++||++|+||.+|.-
T Consensus 2 ~DYYeVLGVs~dA--S~eEIKKAYRKLAKKyHPDKn~~---~eAeekFqeINEAYEVLSDP~KRa~ 62 (871)
T TIGR03835 2 RDYYEVLGIDRDA--DEQEIKKAFRKLAKKYHPDRNKA---PDAASIFAEINEANDVLSNPKKRAN 62 (871)
T ss_pred CChhHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6999999999999 99999999999999999999876 6778899999999999999998853
No 52
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.70 E-value=5.2e-17 Score=94.21 Aligned_cols=54 Identities=26% Similarity=0.307 Sum_probs=48.5
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhc
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLL 62 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~ 62 (72)
|+..++|+||||++++ +.++|+++||++++++|||+.++ .+.+.+|++||++|.
T Consensus 62 Ms~~eAy~ILGv~~~A--s~~eIkkaYRrLa~~~HPDkgGs------~~~~~kIneAyevL~ 115 (116)
T PTZ00100 62 MSKSEAYKILNISPTA--SKERIREAHKQLMLRNHPDNGGS------TYIASKVNEAKDLLL 115 (116)
T ss_pred CCHHHHHHHcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHHHh
Confidence 5678999999999999 99999999999999999998543 367889999999985
No 53
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.69 E-value=5.5e-17 Score=105.28 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=53.6
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-----CchHHHHHHHHHHHHHHHhcCh
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVG-----RKTDAESKFKLISEAYTYLLSG 64 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~-----~~~~~~~~~~~i~~Ay~~L~d~ 64 (72)
+..|+|+||||++++ |.++||++||++++++|||+..+. ..+.++++|+.|++||++|+..
T Consensus 198 ~~~~ay~vLgv~~~a--s~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 198 TLEDAYKVLGVSESD--DDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred cHHhHHHHcCCCCCC--CHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999 999999999999999999997542 1356899999999999999864
No 54
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.68 E-value=1.3e-16 Score=98.10 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=60.6
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchhcC
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFTFL 72 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~~~ 72 (72)
.|||++||+++...++...++++|+.+++++|||+..... +..+.+....||+||.+|+||.+|.-++|
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 5899999999998889999999999999999999987642 34567788999999999999999986654
No 55
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.62 E-value=5.1e-16 Score=104.28 Aligned_cols=66 Identities=27% Similarity=0.356 Sum_probs=60.0
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-chHHHHHHHHHHHHHHHhcChhcc-chh
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR-KTDAESKFKLISEAYTYLLSGNFH-LFT 70 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~-~~~~~~~~~~i~~Ay~~L~d~~~R-~~~ 70 (72)
.+|||.||||.+++ +..||.++||+++.+||||...... +..++.+|.-|-.|-+||+||.+| .|+
T Consensus 393 kRDYYKILGVkRnA--sKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFD 460 (504)
T KOG0624|consen 393 KRDYYKILGVKRNA--SKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFD 460 (504)
T ss_pred cchHHHHhhhcccc--cHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhcc
Confidence 58999999999999 9999999999999999999988743 678999999999999999999877 443
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.4e-16 Score=101.75 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=58.4
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
.+|+|+||||..++ +..+|.++||+|++++|||++.+ ++..+.|..|.+||++|.|...|.++
T Consensus 32 ~enCYdVLgV~Rea--~KseIakAYRqLARrhHPDr~r~---~e~k~~F~~iAtayeilkd~e~rt~y 94 (329)
T KOG0722|consen 32 AENCYDVLGVAREA--NKSEIAKAYRQLARRHHPDRNRD---PESKKLFVKIATAYEILKDNETRTQY 94 (329)
T ss_pred chhHHHHhhhhhhc--cHHHHHHHHHHHHHHhCCcccCC---chhhhhhhhhhcccccccchhhHHhH
Confidence 47999999999999 99999999999999999999998 56669999999999999999998765
No 57
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.9e-15 Score=103.21 Aligned_cols=63 Identities=24% Similarity=0.300 Sum_probs=59.2
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
..|+|.+|||+.++ +.++||+.||+++...||||+-. +.|+|.|+.++-||++|+|+.+|.-|
T Consensus 234 ~~daYsvlGl~~d~--sd~~lKk~Yrk~A~LVhPDKn~~---~~A~Eafk~Lq~Afevig~~~kR~eY 296 (490)
T KOG0720|consen 234 ILDAYSALGLPSDC--SDADLKKNYRKKAMLVHPDKNMI---PRAEEAFKKLQVAFEVIGDSVKRKEY 296 (490)
T ss_pred CCCchhhcCCCCCC--CHHHHHHHHHhhceEeCCCccCC---hhHHHHHHHHHHHHHHhcchhhhhHH
Confidence 67999999999999 99999999999999999999985 89999999999999999999988543
No 58
>PHA02624 large T antigen; Provisional
Probab=99.57 E-value=4.9e-15 Score=104.55 Aligned_cols=60 Identities=33% Similarity=0.367 Sum_probs=54.3
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
.+++|++|||+++++.+.++||++||++++++|||+.++ +++|++|++||++|+++.+|.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd------eekfk~Ln~AYevL~d~~k~~ 69 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD------EEKMKRLNSLYKKLQEGVKSA 69 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc------HHHHHHHHHHHHHHhcHHHhh
Confidence 478999999999988899999999999999999999644 478999999999999988773
No 59
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.56 E-value=2.6e-15 Score=102.91 Aligned_cols=65 Identities=25% Similarity=0.392 Sum_probs=59.6
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPV---GRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~---~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.-|+||||||+.++ +..+||++||+++.++||||.++ ..+.+.++.+..|++||+.|+|...|.=
T Consensus 97 ~fDPyEILGI~~~t--s~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~ren 164 (610)
T COG5407 97 GFDPYEILGIDQDT--SERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRREN 164 (610)
T ss_pred CCChHHhhcccCCC--cHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 35899999999999 99999999999999999999887 5678899999999999999999988743
No 60
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.5e-14 Score=92.17 Aligned_cols=64 Identities=33% Similarity=0.485 Sum_probs=57.6
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..|+|.||||..++ +..+|+++|+++++++|||+++.. ...++.+|.+|.+||++|+|+.+|..
T Consensus 2 ~~d~~~~l~i~~~a--s~~~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~ 65 (306)
T KOG0714|consen 2 GKDYYKILGIARSA--SEEDIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKRKI 65 (306)
T ss_pred cccHHHHhCccccc--cHHHHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHhhh
Confidence 46999999999888 888999999999999999998886 56777799999999999999998853
No 61
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.8e-14 Score=98.00 Aligned_cols=62 Identities=31% Similarity=0.430 Sum_probs=58.3
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhcc
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH 67 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R 67 (72)
..|||.||||...+ +..+|+++||++++.+|||++.++ +.+++.+|+++-+||.+|+||.+|
T Consensus 372 Rkd~ykilGi~~~a--s~~eikkayrk~AL~~Hpd~~ags-q~eaE~kFkevgeAy~il~d~~kr 433 (486)
T KOG0550|consen 372 RKDWYKILGISRNA--SDDEIKKAYRKLALVHHPDKNAGS-QKEAEAKFKEVGEAYTILSDPMKR 433 (486)
T ss_pred hhhHHHHhhhhhhc--ccchhhhHHHHHHHHhCCCcCcch-hHHHHHHHHHHHHHHHHhcCHHHH
Confidence 46999999999999 999999999999999999999886 578999999999999999999877
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.48 E-value=8.8e-14 Score=84.45 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCC---CchHHHHHHHHHHHHHHHhcChhccchhcC
Q 035755 18 PNASQVKAAYKRKVWECHPDLFPVG---RKTDAESKFKLISEAYTYLLSGNFHLFTFL 72 (72)
Q Consensus 18 ~~~~~ik~~yr~l~~~~hPDk~~~~---~~~~~~~~~~~i~~Ay~~L~d~~~R~~~~~ 72 (72)
++..+|+++|+++++++|||+.++. .+..+.+.+..||+||++|+||.+|.-++|
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 5889999999999999999997653 234578899999999999999999976654
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.4e-13 Score=84.64 Aligned_cols=59 Identities=22% Similarity=0.401 Sum_probs=54.9
Q ss_pred chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhc
Q 035755 5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNF 66 (72)
Q Consensus 5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~ 66 (72)
|+|+||.|.|+. +.++|++.||+++...|||+++.+ .+.|...|..|.+||..|-|+..
T Consensus 54 NpfeVLqIdpev--~~edikkryRklSilVHPDKN~Dd-~~rAqkAFdivkKA~k~l~n~~~ 112 (250)
T KOG1150|consen 54 NPFEVLQIDPEV--TDEDIKKRYRKLSILVHPDKNPDD-AERAQKAFDIVKKAYKLLENDKI 112 (250)
T ss_pred ChHHHHhcCCCC--CHHHHHHHHHhhheeecCCCCccc-HHHHHHHHHHHHHHHHHHhCHHH
Confidence 799999999999 999999999999999999999985 36788999999999999999873
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.8e-11 Score=80.08 Aligned_cols=67 Identities=28% Similarity=0.377 Sum_probs=58.4
Q ss_pred cchhhhhCCCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 4 DEARVLLGFPPNS-RPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 4 ~d~y~iLgl~~~~-~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
.|.|.+||++.-. .+++.+|.+++++.+.+||||+..........+.|..|+.||++|+|+..|+++
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qy 110 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQY 110 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhc
Confidence 5889999998875 468899999999999999999985544467789999999999999999999765
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.6e-10 Score=71.93 Aligned_cols=54 Identities=26% Similarity=0.368 Sum_probs=48.8
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHH-Hhc
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYT-YLL 62 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~-~L~ 62 (72)
..+|.||||..++ +..+++.+|..+++++|||.... ....++|.+|.+||. +|+
T Consensus 47 ~e~fril~v~e~~--~adevr~af~~lakq~hpdsgs~---~adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 47 MECFRILGVEEGA--DADEVREAFHDLAKQVHPDSGSE---EADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHHhcccccC--chhHHHHHHHHHHHHcCCCCCCc---cccHHHHHHHHHHHHHHHH
Confidence 5789999999999 99999999999999999998877 566789999999998 554
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=8.1e-10 Score=82.45 Aligned_cols=58 Identities=28% Similarity=0.437 Sum_probs=49.4
Q ss_pred CcccchhhhhCCCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 035755 1 MQGDEARVLLGFPPNSR--PNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLS 63 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~--~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d 63 (72)
|+..+.|+||.|+-+.. -+.+.|+++|++++.+|||||+|.. .++|..+|+||+.|..
T Consensus 1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEG-----RemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEG-----REMFERVNKAYELLSS 1337 (2235)
T ss_pred cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchH-----HHHHHHHHHHHHHHHH
Confidence 56788999999987752 1458999999999999999999753 6899999999999983
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.6e-09 Score=61.08 Aligned_cols=56 Identities=29% Similarity=0.326 Sum_probs=48.6
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcCh
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSG 64 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~ 64 (72)
|+.++.-.||||.+.. +.+.||.++|+.....|||+.++ | ..-..||||+++|...
T Consensus 53 Msr~EA~lIL~v~~s~--~k~KikeaHrriM~~NHPD~GGS---P---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 53 MSRREAALILGVTPSL--DKDKIKEAHRRIMLANHPDRGGS---P---YLASKINEAKDLLEGT 108 (112)
T ss_pred cchHHHHHHhCCCccc--cHHHHHHHHHHHHHcCCCcCCCC---H---HHHHHHHHHHHHHhcc
Confidence 6677788899999999 99999999999999999999988 3 4445699999999754
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.4e-08 Score=59.07 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=58.0
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CCchHHHHHHHHHHHHHHHhcChhccchhc
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPV---GRKTDAESKFKLISEAYTYLLSGNFHLFTF 71 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~---~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~~ 71 (72)
+..+||.+||......+++..+...|...++++|||+... .....+.+....+|+||.+|.||-+|.=+.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4679999999988887789999999999999999999542 112357778899999999999999986543
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.98 E-value=1.5e-05 Score=55.43 Aligned_cols=47 Identities=34% Similarity=0.405 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCC-----chHHHHHHHHHHHHHHHhcC
Q 035755 17 RPNASQVKAAYKRKVWECHPDLFPVGR-----KTDAESKFKLISEAYTYLLS 63 (72)
Q Consensus 17 ~~~~~~ik~~yr~l~~~~hPDk~~~~~-----~~~~~~~~~~i~~Ay~~L~d 63 (72)
-++..+||++||+.++..||||.+... +-.+++.|..+++||.....
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~~ 450 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFNQ 450 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhc
Confidence 358999999999999999999987642 23466777778888876543
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.1e-05 Score=49.70 Aligned_cols=56 Identities=27% Similarity=0.412 Sum_probs=47.5
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-----chHHHHHHHHHHHHHHHh
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR-----KTDAESKFKLISEAYTYL 61 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~-----~~~~~~~~~~i~~Ay~~L 61 (72)
.+.|.+||+...+ +..+|+++|+++....|||+..... -..+.+.++.|++||+.+
T Consensus 113 ~~~l~~l~~~~~~--~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKA--DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhh--hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999 9999999999999999999964421 245788899999999754
No 71
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.80 E-value=9.3e-05 Score=43.75 Aligned_cols=55 Identities=20% Similarity=0.096 Sum_probs=37.4
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLS 63 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d 63 (72)
|+......||||++.. +.++|.+.|..|....+|++.++ ......|..|.+.|..
T Consensus 55 Mtl~EA~~ILnv~~~~--~~eeI~k~y~~Lf~~Nd~~kGGS------fYLQSKV~rAKErl~~ 109 (127)
T PF03656_consen 55 MTLDEARQILNVKEEL--SREEIQKRYKHLFKANDPSKGGS------FYLQSKVFRAKERLEQ 109 (127)
T ss_dssp --HHHHHHHHT--G----SHHHHHHHHHHHHHHT-CCCTS-------HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCcc--CHHHHHHHHHHHHhccCCCcCCC------HHHHHHHHHHHHHHHH
Confidence 6778889999999988 99999999999999999998776 2333456666666543
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.3e-05 Score=49.27 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=52.7
Q ss_pred chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchh
Q 035755 5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
|++..+|.++....+.+.++..|+.+.+.+|||+..... ...+.+.+..++.||.+|.+|..|.-+
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~ 70 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEY 70 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 566677777777667888999999999999999976532 223667899999999999999887543
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=97.12 E-value=0.0022 Score=33.09 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=27.9
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHH
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVW 32 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~ 32 (72)
|+..+.|++|||+++. +.+.|-.+|+....
T Consensus 2 ~~~~~Ay~~Lgi~~~~--~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDT--DDDFIISAFQSKVN 31 (62)
T ss_pred CCHHHHHHHhCcCCCC--CHHHHHHHHHHHHH
Confidence 7889999999999998 99999999998887
No 74
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=93.59 E-value=0.24 Score=28.62 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCC--CchHHHHHHHHHHHHHHHhcChh
Q 035755 19 NASQVKAAYKRKVWECHPDLFPVG--RKTDAESKFKLISEAYTYLLSGN 65 (72)
Q Consensus 19 ~~~~ik~~yr~l~~~~hPDk~~~~--~~~~~~~~~~~i~~Ay~~L~d~~ 65 (72)
+..+++.+.|.+-++.|||..... .+..-++-++.++.-.+.|..+.
T Consensus 7 ~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 7 SSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 678899999999999999986643 23445566778888777777643
No 75
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=92.03 E-value=0.44 Score=30.03 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=28.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhc
Q 035755 13 PPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLL 62 (72)
Q Consensus 13 ~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~ 62 (72)
+++| +.+||.+|..++..+|--| ++.-..|..||+.+.
T Consensus 1 S~~A--SfeEIq~Arn~ll~~y~gd----------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDA--SFEEIQAARNRLLAQYAGD----------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCC--CHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHH
Confidence 4677 9999999999999998222 244556888888654
No 76
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=0.27 Score=32.78 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCC--CCchHHHHHHHHHHHHHHHhcChh
Q 035755 19 NASQVKAAYKRKVWECHPDLFPV--GRKTDAESKFKLISEAYTYLLSGN 65 (72)
Q Consensus 19 ~~~~ik~~yr~l~~~~hPDk~~~--~~~~~~~~~~~~i~~Ay~~L~d~~ 65 (72)
+..+|..+|+..+...||++... ......++.+++|.+||.++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~ 53 (335)
T KOG0724|consen 5 SEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDE 53 (335)
T ss_pred cHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccc
Confidence 77889999999999999999752 111356677999999999999843
No 77
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.34 E-value=0.74 Score=27.30 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=33.3
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPV 41 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~ 41 (72)
|+....-.||+|.+.- +.++|.+.|..|-....+.+.++
T Consensus 56 iTlqEa~qILnV~~~l--n~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPL--NREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred ccHHHHhhHhCCCCCC--CHHHHHHHHHHHHhccCcccCcc
Confidence 4566778899999977 99999999999999987777654
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=88.04 E-value=2.9 Score=22.76 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=31.8
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVG 42 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~ 42 (72)
++|--+++|++|-+ +..||+.+-++.++++.--..|+.
T Consensus 2 CRNIk~LfnfdPPA--T~~EvrdAAlQfVRKlSGtT~PS~ 39 (88)
T COG5552 2 CRNIKELFNFDPPA--TPVEVRDAALQFVRKLSGTTHPSA 39 (88)
T ss_pred ccchHHHhCCCCCC--CcHHHHHHHHHHHHHhcCCCCcch
Confidence 56777899999999 999999999999998866666653
No 79
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=85.37 E-value=4.3 Score=22.06 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=40.9
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchH-HHHHHHHHHHHHHHhcC
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTD-AESKFKLISEAYTYLLS 63 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~-~~~~~~~i~~Ay~~L~d 63 (72)
++|--.+.|+.|-+ +.+||..+-.+.+++..=-..|+....+ .+.....|..+-.-|.+
T Consensus 2 CRnI~~L~~fePpa--T~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 2 CRNIKTLRNFEPPA--TDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred CcchhhhcCCCCCC--CHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666778999999 9999999999999998766666532222 33334556666655544
No 80
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=80.08 E-value=9.1 Score=22.00 Aligned_cols=61 Identities=13% Similarity=0.222 Sum_probs=34.6
Q ss_pred cccchhhhhCCCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhc
Q 035755 2 QGDEARVLLGFPPNSR---PNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLL 62 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~---~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~ 62 (72)
+.+||++.|||+-+.. +..=-|=++|.....+.+.+....++.......-..+.+||+..-
T Consensus 13 sAEdFf~ff~v~YDp~vvnV~RLHILkrf~qyl~~~~~~~~~~~e~~~~~~yr~~L~~AY~dF~ 76 (105)
T PRK14102 13 DAEDYFQFFELPYDPTVVNVNRLHILKQFSQLIAEIDANFPDLSEEEKLEKYQLALEEAYQVFL 76 (105)
T ss_pred cHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4579999999998872 233346666666666544332222111222233346788998643
No 81
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=78.42 E-value=2 Score=28.46 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhc-----Chhccc
Q 035755 49 SKFKLISEAYTYLL-----SGNFHL 68 (72)
Q Consensus 49 ~~~~~i~~Ay~~L~-----d~~~R~ 68 (72)
.+++.|||||++|+ ||.+|+
T Consensus 128 RRLkKVNEAFE~LKRrT~~NPNQRL 152 (284)
T KOG3960|consen 128 RRLKKVNEAFETLKRRTSSNPNQRL 152 (284)
T ss_pred HHHHHHHHHHHHHHhhcCCCccccc
Confidence 35889999999875 566653
No 82
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=77.48 E-value=1.7 Score=15.89 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhc
Q 035755 50 KFKLISEAYTYLL 62 (72)
Q Consensus 50 ~~~~i~~Ay~~L~ 62 (72)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3667888888764
No 83
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=76.71 E-value=12 Score=21.46 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=36.8
Q ss_pred cccchhhhhCCCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHH-HHHHHHHHHHhc
Q 035755 2 QGDEARVLLGFPPNSR---PNASQVKAAYKRKVWECHPDLFPVGRKTDAESK-FKLISEAYTYLL 62 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~---~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~-~~~i~~Ay~~L~ 62 (72)
+.+||++.|||+-+.. +..=-|=++|........+....++ .+.... =..+.+||+..-
T Consensus 13 sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~~~~e--~~~~~~~R~~L~~AY~dFv 75 (105)
T PF03206_consen 13 SAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAPGLSE--EEDWAAYRRALERAYQDFV 75 (105)
T ss_pred CHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCCCCCH--HHHHHHHHHHHHHHHHHHh
Confidence 3578999999998862 2344577788888888766422121 222232 345788887643
No 84
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=71.81 E-value=6.1 Score=20.42 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 24 KAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 24 k~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+..+...+.-||+... .+..+.|.+.|..|++..+..|
T Consensus 13 ~~~~r~~~~~~~p~~~~-------~eisk~l~~~Wk~ls~~eK~~y 51 (72)
T cd01388 13 SKRHRRKVLQEYPLKEN-------RAISKILGDRWKALSNEEKQPY 51 (72)
T ss_pred HHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Confidence 34556666777887432 3667788899999998776655
No 85
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=69.38 E-value=2.1 Score=22.26 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=19.9
Q ss_pred cchhhhhCCCCCCCCCHHHH-HHHHHHHHHHhCCCCC
Q 035755 4 DEARVLLGFPPNSRPNASQV-KAAYKRKVWECHPDLF 39 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~i-k~~yr~l~~~~hPDk~ 39 (72)
.+++++||.++ +++ ......+....|||-.
T Consensus 6 ~~~~~i~G~~~------~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 6 DNFYEIFGYSP------EEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp THHHHHHTS-H------HHHTCBEHHHHHHHB-TTTH
T ss_pred HHHHHHhCCCH------HHhccCCHHHHHhhcCHHHH
Confidence 57889999954 445 5556667788899843
No 86
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=68.08 E-value=7.7 Score=19.19 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 25 AAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 25 ~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
+..+...+.-||+.. ..+..+.|.+.|..|++..+..|
T Consensus 13 ~~~r~~~~~~~p~~~-------~~~i~~~~~~~W~~ls~~eK~~y 50 (66)
T cd01390 13 QEQRPKLKKENPDAS-------VTEVTKILGEKWKELSEEEKKKY 50 (66)
T ss_pred HHHHHHHHHHCcCCC-------HHHHHHHHHHHHHhCCHHHHHHH
Confidence 334555666777733 23667788999999998776655
No 87
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=64.98 E-value=10 Score=19.76 Aligned_cols=40 Identities=8% Similarity=0.059 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+.++..++.-+|+... .+..+.|.+.|..|++..+..|
T Consensus 12 f~~~~r~~~~~~~p~~~~-------~eisk~~g~~Wk~ls~eeK~~y 51 (77)
T cd01389 12 YRQDKHAQLKTENPGLTN-------NEISRIIGRMWRSESPEVKAYY 51 (77)
T ss_pred HHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHhhCCHHHHHHH
Confidence 345667777888887532 2566778888888887766554
No 88
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=62.33 E-value=12 Score=18.32 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+.++...+.-||+.. ..+....+.+.|..|++..+..|
T Consensus 11 f~~~~~~~~~~~~~~~~-------~~~i~~~~~~~W~~l~~~~k~~y 50 (66)
T cd00084 11 FSQEHRAEVKAENPGLS-------VGEISKILGEMWKSLSEEEKKKY 50 (66)
T ss_pred HHHHHHHHHHHHCcCCC-------HHHHHHHHHHHHHhCCHHHHHHH
Confidence 34556666777788733 23567778889999888766554
No 89
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=56.32 E-value=24 Score=17.42 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=18.7
Q ss_pred hhhhCCCCCCCCCHHHHHHHHHHHHH
Q 035755 7 RVLLGFPPNSRPNASQVKAAYKRKVW 32 (72)
Q Consensus 7 y~iLgl~~~~~~~~~~ik~~yr~l~~ 32 (72)
|.+=|+.|.. +++|.|++.|+-+.
T Consensus 2 ~~~egl~pk~--DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKM--DPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCC--CHHHHHHHHHHHHH
Confidence 4556888888 99999999887554
No 90
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=54.97 E-value=19 Score=24.70 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 28 KRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 28 r~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|+...+--||-+.. |..++|-+-|+.|++.+||-|
T Consensus 78 RRkma~qnP~mHNS-------EISK~LG~~WK~Lse~EKrPF 112 (331)
T KOG0527|consen 78 RRKLAKQNPKMHNS-------EISKRLGAEWKLLSEEEKRPF 112 (331)
T ss_pred HHHHHHhCcchhhH-------HHHHHHHHHHhhcCHhhhccH
Confidence 44444444776555 889999999999999999977
No 91
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=53.88 E-value=42 Score=19.48 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=30.4
Q ss_pred cccchhhhhCCCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCCchHH-HHHHHHHHHHHHHh
Q 035755 2 QGDEARVLLGFPPNSR---PNASQVKAAYKRKVWECHPDLFPVGRKTDA-ESKFKLISEAYTYL 61 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~---~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~-~~~~~~i~~Ay~~L 61 (72)
+.++|++.|||+-+.. +..-.|=++|......-. .++...... ...=..+.+||+..
T Consensus 17 sAEdff~ff~V~YDp~vvnV~RLHILKrF~~yL~~~~---~~~~~e~~~~~~yr~aL~~AY~dF 77 (113)
T PRK00810 17 SAEEFFQLLGVPYDPKVVNVARLHILKRMGQYLAQED---FAGLPEAEARARCRAVLERAYADF 77 (113)
T ss_pred cHHHHHHHhCCCCCHHHHHHhHHHHHHHHHHHHHhcc---cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3478999999987762 233345566666555432 222111222 22234577788754
No 92
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=53.76 E-value=35 Score=23.61 Aligned_cols=56 Identities=11% Similarity=0.026 Sum_probs=37.7
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHh
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L 61 (72)
..++|+.|||++.. =..++=+.-...+.+.-|-...-+ .|.-.....++.++...|
T Consensus 249 R~~Fy~alGld~~~--yD~~Vi~~Tn~~a~rvFP~~Ldvd-~P~F~~~L~~~~~~n~~l 304 (351)
T CHL00185 249 RSDFYAAIGLDARQ--FDMHVIRKTNESAARLFPVVLDVD-NPKFFKYLDQCACANLKL 304 (351)
T ss_pred hHHHHHHhCCCHHH--hhHHHHHHhhHHHHhhCCeeecCC-CHHHHHHHHHHHHHHHHH
Confidence 46899999999887 666666666777777778775432 155555555555555544
No 93
>COG2879 Uncharacterized small protein [Function unknown]
Probab=53.70 E-value=32 Score=18.03 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCCCCCC
Q 035755 26 AYKRKVWECHPDLFPV 41 (72)
Q Consensus 26 ~yr~l~~~~hPDk~~~ 41 (72)
-|-.-.++.|||+.+-
T Consensus 27 nYVehmr~~hPd~p~m 42 (65)
T COG2879 27 NYVEHMRKKHPDKPPM 42 (65)
T ss_pred HHHHHHHHhCcCCCcc
Confidence 4677788999998775
No 94
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=49.91 E-value=12 Score=18.70 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 24 KAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 24 k~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+..+...+.-||+... .+..+.|.+.|.-|++..+..|
T Consensus 12 ~~~~~~~~k~~~p~~~~-------~~i~~~~~~~W~~l~~~eK~~y 50 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLSN-------KEISKILAQMWKNLSEEEKAPY 50 (69)
T ss_dssp HHHHHHHHHHHSTTSTH-------HHHHHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHHhccccc-------ccchhhHHHHHhcCCHHHHHHH
Confidence 44556666677887552 3566777888888877666554
No 95
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=48.55 E-value=61 Score=22.20 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=36.7
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHh
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L 61 (72)
+..++|+.|||++.. =..++=+.-...+.+.-|-...-+. |.-.....++.++...|
T Consensus 232 ~R~~Fy~alGld~~~--yD~~Vi~~Tn~~s~rvFP~~Ldvd~-P~F~~~L~~~~~~n~~l 288 (323)
T cd01047 232 QRPDFYEALGLDTTE--FDMHVIRETNETAARVFPAVLDVDN-PEFRRGLDRLVDLNLKL 288 (323)
T ss_pred chHHHHHHhCCCHHH--hhHHHHHHhhHHHHhhCCeeecCCC-hHHHHHHHHHHHHHHHH
Confidence 346899999999887 6666666677777888787754321 44444444444444433
No 96
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=48.48 E-value=50 Score=22.90 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=36.4
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHh
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L 61 (72)
..++|+.|||++.. =..++=+.-...+.+.-|-...-+. |.-.....++.++...|
T Consensus 253 R~~Fy~alGlD~~~--yD~~Vi~~Tne~s~rvFP~~Ldvd~-P~F~~~L~~~~~~n~~l 308 (355)
T PRK13654 253 RPDFYEALGLDARE--YDQEVIRKTNETSARVFPVVLDVDD-PRFYARLERCVENNEKL 308 (355)
T ss_pred chHHHHHhCCCHHH--hhHHHHHHhhHHHHhhCCeeecCCC-hHHHHHHHHHHHHHHHH
Confidence 46899999999887 6666666677778888787754321 44444444444444433
No 97
>smart00398 HMG high mobility group.
Probab=48.45 E-value=23 Score=17.45 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 25 AAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 25 ~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
...+.....-||+.. ..+....|.+.|..|++..+..|
T Consensus 14 ~~~r~~~~~~~~~~~-------~~~i~~~~~~~W~~l~~~ek~~y 51 (70)
T smart00398 14 QENRAKIKAENPDLS-------NAEISKKLGERWKLLSEEEKAPY 51 (70)
T ss_pred HHHHHHHHHHCcCCC-------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 344555566677743 23556678888888887766544
No 98
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=47.74 E-value=52 Score=22.66 Aligned_cols=57 Identities=11% Similarity=-0.023 Sum_probs=36.5
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHh
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L 61 (72)
+..++|+.|||++.. =..++=+.-...+.+.-|-...-+. |.-.....++..+...|
T Consensus 242 ~R~~Fy~alGld~~~--yD~~Vi~~Tne~s~rvFP~~Ldvd~-P~F~~~L~~~~~~n~~l 298 (337)
T TIGR02029 242 QRPGFYEALGLDATD--FDLQVFRNTNETSGRIFPMTLNTEH-PRFRRLLDRMAGYSEKI 298 (337)
T ss_pred ccHHHHHHhCCCHHH--hhHHHHHHhhHHHHhhCCeeecCCC-HHHHHHHHHHHHHHHHH
Confidence 346899999999887 5666666667777777787754321 44444444444444444
No 99
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=47.21 E-value=27 Score=15.23 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhCC
Q 035755 20 ASQVKAAYKRKVWECHP 36 (72)
Q Consensus 20 ~~~ik~~yr~l~~~~hP 36 (72)
.++.+.+.|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 46788889999999984
No 100
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=39.80 E-value=81 Score=21.91 Aligned_cols=54 Identities=11% Similarity=0.077 Sum_probs=34.1
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHH
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYT 59 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~ 59 (72)
..++|+.|||++.. =..++=+.-...+.+.-|-...-+. |.-.....++.++..
T Consensus 249 R~~Fy~alGld~~~--yD~~Vi~~Tne~s~rvFP~~Ldvd~-P~F~~~L~~~~~~n~ 302 (357)
T PLN02508 249 RTAFYEGIGLNTKQ--FNMHVIIETNRTTARIFPAVLDVEN-PEFKRKLDRMVVINQ 302 (357)
T ss_pred hHHHHHHhCCCHHH--hhHHHHHHhhHHHHhhCCeeecCCC-HHHHHHHHHHHHHHH
Confidence 46899999999886 5666666667777777787754321 443344444333333
No 101
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=38.24 E-value=36 Score=19.15 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=23.6
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLF 39 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~ 39 (72)
.+..+|.||.++... |..+|=+.--..+++.+||-.
T Consensus 9 s~dqP~~il~a~~~S--Ta~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 9 SPDQPYAILRAPRVS--TAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCCCeeEEEccccc--cHHHHHHHHHHHhccCCCCcc
Confidence 456789999999988 766654444344444467653
No 102
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=37.22 E-value=52 Score=15.67 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 035755 46 DAESKFKLISEAYTYLL 62 (72)
Q Consensus 46 ~~~~~~~~i~~Ay~~L~ 62 (72)
.-++.-++++.|+.+|.
T Consensus 25 ~eeEt~qkL~~AF~iLa 41 (41)
T PF11590_consen 25 EEEETRQKLRRAFDILA 41 (41)
T ss_dssp -HHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHhhC
Confidence 45667788999998873
No 103
>smart00427 H2B Histone H2B.
Probab=36.72 E-value=65 Score=17.95 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=10.8
Q ss_pred HHHHHHhCCCCCCC
Q 035755 28 KRKVWECHPDLFPV 41 (72)
Q Consensus 28 r~l~~~~hPDk~~~ 41 (72)
.+..++.|||..-.
T Consensus 8 ~kvLKqVhpd~giS 21 (89)
T smart00427 8 YKVLKQVHPDTGIS 21 (89)
T ss_pred HHHHHHhCCCcccc
Confidence 67788999998544
No 104
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.22 E-value=71 Score=23.93 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHHhCCCC
Q 035755 19 NASQVKAAYKRKVWECHPDL 38 (72)
Q Consensus 19 ~~~~ik~~yr~l~~~~hPDk 38 (72)
.-++|+.+++.+.+.|||.+
T Consensus 402 ~mEqvk~k~~~m~r~YSP~k 421 (651)
T KOG2320|consen 402 LMEQVKQKFTAMQRRYSPSK 421 (651)
T ss_pred HHHHHHHHHHHHHHhhChHH
Confidence 56789999999999999974
No 105
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=32.54 E-value=42 Score=16.12 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=17.2
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHHH
Q 035755 10 LGFPPNSRPNASQVKAAYKRKVWE 33 (72)
Q Consensus 10 Lgl~~~~~~~~~~ik~~yr~l~~~ 33 (72)
=|||++. +.++|+..+.....-
T Consensus 4 ~nlp~~~--t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 4 GNLPPDV--TEEELRDFFSQFGKI 25 (70)
T ss_dssp ESETTTS--SHHHHHHHHHTTSTE
T ss_pred cCCCCcC--CHHHHHHHHHHhhhc
Confidence 3788888 999999988775443
No 106
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=32.32 E-value=1.6e+02 Score=19.88 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=35.1
Q ss_pred cchhhhhCCCC-CCCCCHHHHHHHHHHHHHH-------hCCCCCCC-CCchHHHHHHHHHHHHHHHhcCh
Q 035755 4 DEARVLLGFPP-NSRPNASQVKAAYKRKVWE-------CHPDLFPV-GRKTDAESKFKLISEAYTYLLSG 64 (72)
Q Consensus 4 ~d~y~iLgl~~-~~~~~~~~ik~~yr~l~~~-------~hPDk~~~-~~~~~~~~~~~~i~~Ay~~L~d~ 64 (72)
.++++-+|+.. .. +.+|+.+-...+..+ .++|.... ...-...+.++.+.+||+.|++.
T Consensus 82 ~pl~~~l~l~~~~~--~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 82 PPLSERLGLETEEY--STEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred cCHHHHcCCCCCCC--CHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 45667789988 45 888877666555443 33332211 00113466778888888888753
No 107
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=32.09 E-value=1.1e+02 Score=18.47 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=20.0
Q ss_pred HHHHhCCCCCCCC-------------------CchHHHHHHHHHHHHHH
Q 035755 30 KVWECHPDLFPVG-------------------RKTDAESKFKLISEAYT 59 (72)
Q Consensus 30 l~~~~hPDk~~~~-------------------~~~~~~~~~~~i~~Ay~ 59 (72)
-....|||..... ..+...+.+..+|.+|+
T Consensus 56 ~~l~~HP~lg~~~~~~~~~~~~S~~EQagl~~~~~~~~~~L~~lN~~Y~ 104 (158)
T TIGR03180 56 EALAGHPRIGEKPAGQAAYAATSRREQAGVDGADEETRAALLEGNAAYE 104 (158)
T ss_pred HHHHhCCcccCccccccchhhhhHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 4567899986421 12456667888899986
No 108
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=30.80 E-value=1.3e+02 Score=18.39 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=21.3
Q ss_pred HHHHHhCCCCCCCC--------------CchHHHHHHHHHHHHHH
Q 035755 29 RKVWECHPDLFPVG--------------RKTDAESKFKLISEAYT 59 (72)
Q Consensus 29 ~l~~~~hPDk~~~~--------------~~~~~~~~~~~i~~Ay~ 59 (72)
.-....|||..... ..+...+.+..+|.+|+
T Consensus 65 ~~~l~~HP~lg~~~~~~~S~~EQ~gl~~l~~~~~~~l~~lN~~Y~ 109 (166)
T PRK13798 65 DEALAGHPRIGERPASKASAREQAGVADADEAVMAALAAGNRAYE 109 (166)
T ss_pred HHHHHhCCcccCccccccCHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 34567899986421 12456678899999997
No 109
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=30.60 E-value=32 Score=18.28 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=19.6
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 035755 10 LGFPPNSRPNASQVKAAYKRKVWECHPD 37 (72)
Q Consensus 10 Lgl~~~~~~~~~~ik~~yr~l~~~~hPD 37 (72)
.-++.+. +.+++|+.|.+......|-
T Consensus 7 ~~Lh~G~--~~e~vk~~F~~~~~~Vs~~ 32 (71)
T PF04282_consen 7 KRLHEGE--DPEEVKEEFKKLFSDVSAS 32 (71)
T ss_pred HHHhCCC--CHHHHHHHHHHHHCCCCHH
Confidence 3466777 8999999998888766554
No 110
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=30.55 E-value=38 Score=19.88 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=18.2
Q ss_pred chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 035755 5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPD 37 (72)
Q Consensus 5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPD 37 (72)
+-=++||++++. -...+.++-.++-..+-||
T Consensus 133 eIA~~lgis~~t--V~~~l~Rar~~Lr~~l~~~ 163 (164)
T PRK12547 133 DAAAICGCAVGT--IKSRVSRARNRLQELLKVD 163 (164)
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHHHHHhcc
Confidence 334567777666 5556666666665555444
No 111
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=30.33 E-value=1.2e+02 Score=17.83 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 035755 45 TDAESKFKLISEAYTYLL 62 (72)
Q Consensus 45 ~~~~~~~~~i~~Ay~~L~ 62 (72)
+.+...+..|.||+..||
T Consensus 42 e~~QRi~d~VsEalh~ls 59 (120)
T PF12057_consen 42 EEDQRIFDLVSEALHYLS 59 (120)
T ss_pred hhHhHHHHHHHHHHHHHH
Confidence 445555556666555444
No 112
>PF14893 PNMA: PNMA
Probab=30.11 E-value=48 Score=22.74 Aligned_cols=20 Identities=20% Similarity=0.599 Sum_probs=16.5
Q ss_pred hhhCCCCCCCCCHHHHHHHHHH
Q 035755 8 VLLGFPPNSRPNASQVKAAYKR 29 (72)
Q Consensus 8 ~iLgl~~~~~~~~~~ik~~yr~ 29 (72)
=|+||+.++ +..+|..+.+.
T Consensus 22 Lv~giP~dc--~~~ei~e~l~~ 41 (331)
T PF14893_consen 22 LVLGIPEDC--EEAEIEEALQA 41 (331)
T ss_pred eeecCCCCC--CHHHHHHHHHH
Confidence 378999999 99998887655
No 113
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=30.00 E-value=85 Score=15.94 Aligned_cols=43 Identities=9% Similarity=0.127 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHHh--CCCCCCCCCchHHHHHHHHHHHHHHHhcChh
Q 035755 19 NASQVKAAYKRKVWEC--HPDLFPVGRKTDAESKFKLISEAYTYLLSGN 65 (72)
Q Consensus 19 ~~~~ik~~yr~l~~~~--hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~ 65 (72)
.+..+.++..+++..+ +|.. .-+.+-+....+.-||..|.+|.
T Consensus 13 GD~Rl~~Rl~~l~~~la~~p~~----Sip~a~~~wa~tkaAYRF~~N~~ 57 (58)
T PF14706_consen 13 GDKRLTRRLVKLAESLAEKPGA----SIPQACQDWAETKAAYRFFRNPR 57 (58)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTS-----HHHHTT-HHHHHHHHHHHT-TT
T ss_pred CcchHHHHHHHHHHHHHHCCCC----ccchhccCHHHHHHHHHhhcCCC
Confidence 4556777887776644 4433 23556667888899999998873
No 114
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=29.85 E-value=72 Score=17.84 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=18.8
Q ss_pred hhhCCCCCCCCCHHHHHHHHHHHHHHh
Q 035755 8 VLLGFPPNSRPNASQVKAAYKRKVWEC 34 (72)
Q Consensus 8 ~iLgl~~~~~~~~~~ik~~yr~l~~~~ 34 (72)
-|.+||.+. +...|+.+.++|+-.|
T Consensus 6 ~V~NLP~~~--d~~~I~~RL~qLsdNC 30 (90)
T PF11608_consen 6 YVSNLPTNK--DPSSIKNRLRQLSDNC 30 (90)
T ss_dssp EEES--TTS---HHHHHHHHHHHHHTT
T ss_pred EEecCCCCC--CHHHHHHHHHHHhhcc
Confidence 466888888 9999999999999766
No 115
>PLN00158 histone H2B; Provisional
Probab=29.83 E-value=1e+02 Score=18.04 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=11.7
Q ss_pred HHHHHHHhCCCCCCC
Q 035755 27 YKRKVWECHPDLFPV 41 (72)
Q Consensus 27 yr~l~~~~hPDk~~~ 41 (72)
..+..++.|||..-.
T Consensus 33 I~kVLKQVhPd~gIS 47 (116)
T PLN00158 33 IYKVLKQVHPDTGIS 47 (116)
T ss_pred HHHHHHHhCCCCCcc
Confidence 367789999998654
No 116
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=28.80 E-value=73 Score=19.58 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHhcChhcc
Q 035755 45 TDAESKFKLISEAYTYLLSGNFH 67 (72)
Q Consensus 45 ~~~~~~~~~i~~Ay~~L~d~~~R 67 (72)
.+.+.++..|.++.++|.||.++
T Consensus 62 eEetkrLa~ireeLE~l~dP~Rk 84 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRK 84 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHH
Confidence 45667788899999999999765
No 117
>COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]
Probab=28.70 E-value=36 Score=22.21 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhCCCC
Q 035755 20 ASQVKAAYKRKVWECHPDL 38 (72)
Q Consensus 20 ~~~ik~~yr~l~~~~hPDk 38 (72)
...+-++||+.-+++-+|.
T Consensus 59 d~p~v~awr~~y~~~g~kp 77 (229)
T COG3382 59 DEPVVKAWRDAYWRFGIKP 77 (229)
T ss_pred cchHHHHHHHHHHHhCCCc
Confidence 3344455555555554443
No 118
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=28.59 E-value=79 Score=15.12 Aligned_cols=27 Identities=7% Similarity=0.005 Sum_probs=19.1
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHH
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRK 30 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l 30 (72)
+..|..+..+.+..++..+++..++++
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~ 28 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS 28 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence 345667766666567888998888764
No 119
>PTZ00463 histone H2B; Provisional
Probab=28.35 E-value=1.3e+02 Score=17.65 Aligned_cols=14 Identities=21% Similarity=0.143 Sum_probs=11.1
Q ss_pred HHHHHHhCCCCCCC
Q 035755 28 KRKVWECHPDLFPV 41 (72)
Q Consensus 28 r~l~~~~hPDk~~~ 41 (72)
.+..++.|||..-.
T Consensus 35 ~KVLKqVhPd~gIS 48 (117)
T PTZ00463 35 FKVLKQVHPDTGIS 48 (117)
T ss_pred HHHHHhhCCCCCcc
Confidence 67788999998654
No 120
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=27.92 E-value=14 Score=17.83 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=8.8
Q ss_pred HHHHHHhcChh
Q 035755 55 SEAYTYLLSGN 65 (72)
Q Consensus 55 ~~Ay~~L~d~~ 65 (72)
++||-+|||..
T Consensus 10 qeayvilsdde 20 (47)
T PF06975_consen 10 QEAYVILSDDE 20 (47)
T ss_pred hhheeeccccc
Confidence 68999999764
No 121
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=27.86 E-value=55 Score=18.41 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=16.8
Q ss_pred hhCCCCCCCCCHHHHHHHHHHHH
Q 035755 9 LLGFPPNSRPNASQVKAAYKRKV 31 (72)
Q Consensus 9 iLgl~~~~~~~~~~ik~~yr~l~ 31 (72)
+|-|+++| +..+|+++...+-
T Consensus 25 vF~V~~~A--tK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDA--TKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCC--CHHHHHHHHHHHh
Confidence 46688888 9999999987764
No 122
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=27.36 E-value=35 Score=18.63 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhcc
Q 035755 26 AYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH 67 (72)
Q Consensus 26 ~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R 67 (72)
-+.+....||-+++-.. .|.+.|-+|-+|.+|
T Consensus 23 ~i~qaL~~y~~~Rnvd~----------Li~~v~pVLDtPaK~ 54 (80)
T cd07355 23 GIKKALEDYFQHRNIDT----------LIVDVYPVLDTPAKQ 54 (80)
T ss_pred HHHHHHHHHHHhccHHH----------HHhhhhhhcCCHHHH
Confidence 33444555665554331 245555566666655
No 123
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=27.29 E-value=1e+02 Score=16.04 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCch
Q 035755 19 NASQVKAAYKRKVWECHPDLFPVGRKT 45 (72)
Q Consensus 19 ~~~~ik~~yr~l~~~~hPDk~~~~~~~ 45 (72)
+.+.|..+++.+....|-|..++...+
T Consensus 43 ~~~~l~~~wk~ll~~q~HD~i~Gt~~~ 69 (79)
T smart00872 43 PSEQLEELWKALLLNQFHDAITGTSID 69 (79)
T ss_pred cHHHHHHHHHHHHHhcCcccCCccCcH
Confidence 678899999999999999999885433
No 124
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=26.34 E-value=33 Score=17.36 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=17.0
Q ss_pred chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 035755 5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLF 39 (72)
Q Consensus 5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~ 39 (72)
-||+||+++.- +. +=+..|-+ .++-||+..
T Consensus 12 AFY~vl~~~nL---te-eQrn~yI~-~lKddPs~s 41 (54)
T PF02216_consen 12 AFYEVLHMPNL---TE-EQRNGYIQ-SLKDDPSRS 41 (54)
T ss_dssp HHHHHHCSTTS----H-HHHHHHHH-HHHH-GCCH
T ss_pred HHHHHHcCCCc---CH-HHHHhHHH-HHhhChHHH
Confidence 48999999744 33 33445544 345677754
No 125
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=25.72 E-value=49 Score=19.92 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=15.3
Q ss_pred chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 035755 5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPD 37 (72)
Q Consensus 5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPD 37 (72)
+-=++||+++++ -...+.++-.++-....||
T Consensus 151 EIA~~lgis~~t--Vk~~l~Rar~~Lr~~~~~~ 181 (185)
T PRK09649 151 DAAAVCGCPVGT--IRSRVARARDALLADAEPD 181 (185)
T ss_pred HHHHHHCCCHHH--HHHHHHHHHHHHHhhCCcc
Confidence 334567776665 4444444444444433333
No 126
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=25.69 E-value=40 Score=16.81 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=10.4
Q ss_pred hhhCCCCCCCCCHHHHHHHHHHH
Q 035755 8 VLLGFPPNSRPNASQVKAAYKRK 30 (72)
Q Consensus 8 ~iLgl~~~~~~~~~~ik~~yr~l 30 (72)
+.|||++.+ -...|+++-+++
T Consensus 31 ~~lgis~st--~~~~LRrae~kl 51 (53)
T PF04967_consen 31 EELGISKST--VSEHLRRAERKL 51 (53)
T ss_pred HHhCCCHHH--HHHHHHHHHHHH
Confidence 345555554 444455554443
No 127
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=25.07 E-value=1.5e+02 Score=17.77 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=19.2
Q ss_pred HHHHHhCCCCCCC---------------------CCchHHHHHHHHHHHHHH
Q 035755 29 RKVWECHPDLFPV---------------------GRKTDAESKFKLISEAYT 59 (72)
Q Consensus 29 ~l~~~~hPDk~~~---------------------~~~~~~~~~~~~i~~Ay~ 59 (72)
.-+...||+.... ...+...+.+..+|.+|+
T Consensus 56 ~~~l~aHP~lg~~~~~~~~~s~~S~~EQ~~agl~~~~~~~~~~L~~lN~~Y~ 107 (159)
T PF09349_consen 56 LEALRAHPRLGERAARAGNLSAASASEQASAGLDSLDEEELAELAALNQAYE 107 (159)
T ss_dssp HHHHHTS--TTSHHHHHCCCHHHHHHHTHHCCTTSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccccccccccchhhhhhhhhcccccCCHHHHHHHHHHHHHHH
Confidence 3456789987652 123456677888999996
No 128
>CHL00030 rpl23 ribosomal protein L23
Probab=24.78 E-value=69 Score=17.84 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=16.9
Q ss_pred hhCCCCCCCCCHHHHHHHHHHHH
Q 035755 9 LLGFPPNSRPNASQVKAAYKRKV 31 (72)
Q Consensus 9 iLgl~~~~~~~~~~ik~~yr~l~ 31 (72)
+|-|++++ +..+|+++...+-
T Consensus 23 ~F~V~~~a--nK~eIK~avE~lf 43 (93)
T CHL00030 23 TFDVDSGS--TKTEIKHWIELFF 43 (93)
T ss_pred EEEECCCC--CHHHHHHHHHHHh
Confidence 35688888 9999999987763
No 129
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=24.74 E-value=99 Score=20.99 Aligned_cols=21 Identities=24% Similarity=0.071 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHHhCCCCC
Q 035755 19 NASQVKAAYKRKVWECHPDLF 39 (72)
Q Consensus 19 ~~~~ik~~yr~l~~~~hPDk~ 39 (72)
+.+++-++.+-.--.+|||..
T Consensus 49 ~~~~lw~Ak~l~~Sa~HPDTg 69 (308)
T PF03820_consen 49 TDDELWKAKKLYDSAFHPDTG 69 (308)
T ss_pred CHHHHHHHHHHhhcccCCCCC
Confidence 899999999999999999974
No 130
>PF09938 DUF2170: Uncharacterized protein conserved in bacteria (DUF2170); InterPro: IPR019231 This family of various hypothetical prokaryotic proteins has no known function.
Probab=24.68 E-value=74 Score=19.16 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=15.6
Q ss_pred cccchhhhhC-CCCCCCCCHHHHHHHH
Q 035755 2 QGDEARVLLG-FPPNSRPNASQVKAAY 27 (72)
Q Consensus 2 ~~~d~y~iLg-l~~~~~~~~~~ik~~y 27 (72)
..+|||.++| ++... +.+.|-.-.
T Consensus 97 ~g~~~Yv~FGALS~~S--~l~~I~~Ei 121 (140)
T PF09938_consen 97 DGEDYYVAFGALSAQS--SLEDIVIEI 121 (140)
T ss_pred cCcEEEEEeeeecccC--CHHHHHHHH
Confidence 4678999998 66666 555554333
No 131
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.36 E-value=45 Score=21.96 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhcChh
Q 035755 49 SKFKLISEAYTYLLSGN 65 (72)
Q Consensus 49 ~~~~~i~~Ay~~L~d~~ 65 (72)
..+..|.+||..|++..
T Consensus 198 ~~Y~~v~~AY~lLgk~~ 214 (291)
T PF10475_consen 198 DKYSKVQEAYQLLGKTQ 214 (291)
T ss_pred HHHHHHHHHHHHHhhhH
Confidence 45777888888888653
No 132
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=23.98 E-value=77 Score=17.60 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHHH
Q 035755 18 PNASQVKAAYKRK 30 (72)
Q Consensus 18 ~~~~~ik~~yr~l 30 (72)
+.+..|+.+||+|
T Consensus 78 l~P~hlreA~rrL 90 (90)
T PF04719_consen 78 LQPDHLREAYRRL 90 (90)
T ss_dssp --HHHHHHHHHHH
T ss_pred CCcHHHHHHHHhC
Confidence 5788899999886
No 133
>PF14791 DNA_pol_B_thumb: DNA polymerase beta thumb ; PDB: 1HUZ_A 3K75_D 1HUO_A 2BPC_A 1RPL_A 1NOM_A 1ZQX_A 1ZQU_A 1ZQZ_A 1ZQV_A ....
Probab=23.89 E-value=33 Score=17.67 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=8.8
Q ss_pred cccchhhhhCCCC
Q 035755 2 QGDEARVLLGFPP 14 (72)
Q Consensus 2 ~~~d~y~iLgl~~ 14 (72)
+.+|.|+.||++-
T Consensus 44 ~E~dif~~Lgl~y 56 (64)
T PF14791_consen 44 SEEDIFDALGLPY 56 (64)
T ss_dssp SHHHHHHHTTS--
T ss_pred CHHHHHHHcCCCC
Confidence 3578899999863
No 134
>PRK10613 hypothetical protein; Provisional
Probab=22.86 E-value=34 Score=18.37 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=7.7
Q ss_pred CHHHHHHHHHH
Q 035755 19 NASQVKAAYKR 29 (72)
Q Consensus 19 ~~~~ik~~yr~ 29 (72)
+..+||.+||+
T Consensus 64 Tv~QIK~aYRq 74 (74)
T PRK10613 64 TVKQIKQAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 45678888874
No 135
>smart00362 RRM_2 RNA recognition motif.
Probab=22.84 E-value=98 Score=14.25 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=16.4
Q ss_pred hhCCCCCCCCCHHHHHHHHHHHH
Q 035755 9 LLGFPPNSRPNASQVKAAYKRKV 31 (72)
Q Consensus 9 iLgl~~~~~~~~~~ik~~yr~l~ 31 (72)
|-||+.+. +..+|+..+....
T Consensus 4 i~~l~~~~--~~~~l~~~~~~~g 24 (72)
T smart00362 4 VGNLPPDV--TEEDLKELFSKFG 24 (72)
T ss_pred EcCCCCcC--CHHHHHHHHHhcC
Confidence 45788888 9999999887653
No 136
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=22.66 E-value=96 Score=16.27 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=20.4
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPD 37 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPD 37 (72)
.+.=+.||+++. +..+--..||+.++++.|.
T Consensus 17 ~~Aa~~lG~~~~---~v~~wv~~fR~wll~LDPS 47 (65)
T PF05344_consen 17 AQAADRLGTDPG---TVRRWVRMFRQWLLQLDPS 47 (65)
T ss_pred HHHHHHHCcCHH---HHHHHHHHHHHHHHHcCCC
Confidence 344456666555 3455567888888888775
No 137
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=22.30 E-value=74 Score=16.23 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhcChhccch
Q 035755 47 AESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 47 ~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+.+..|.+.|..|++..+..|
T Consensus 32 ~~e~~k~~~~~Wk~Ls~~EK~~Y 54 (73)
T PF09011_consen 32 FREVMKEISERWKSLSEEEKEPY 54 (73)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHH
Confidence 45777889999999997776654
No 138
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=22.20 E-value=1.4e+02 Score=15.79 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=3.8
Q ss_pred HHHHHHHh
Q 035755 27 YKRKVWEC 34 (72)
Q Consensus 27 yr~l~~~~ 34 (72)
|...+..+
T Consensus 60 W~~va~~l 67 (92)
T PF01388_consen 60 WREVARKL 67 (92)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 44444444
No 139
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=22.15 E-value=86 Score=16.82 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=16.7
Q ss_pred hhCCCCCCCCCHHHHHHHHHHHH
Q 035755 9 LLGFPPNSRPNASQVKAAYKRKV 31 (72)
Q Consensus 9 iLgl~~~~~~~~~~ik~~yr~l~ 31 (72)
.|-|++++ +..+|+++..++-
T Consensus 18 ~F~V~~~a--nK~eIK~avE~lf 38 (77)
T TIGR03636 18 TFIVDRKA--TKGDIKRAVEKLF 38 (77)
T ss_pred EEEECCCC--CHHHHHHHHHHHh
Confidence 35678888 9999999887763
No 140
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=21.94 E-value=67 Score=19.74 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=18.0
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHH
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRK 30 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l 30 (72)
+...+..+||+......+.++|+.+|+-.
T Consensus 73 df~~Fl~~ms~~~~~~~~~Eel~~aF~~f 101 (160)
T COG5126 73 DFPEFLTVMSVKLKRGDKEEELREAFKLF 101 (160)
T ss_pred CHHHHHHHHHHHhccCCcHHHHHHHHHHh
Confidence 44556677776654433677777777543
No 141
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=21.48 E-value=2e+02 Score=22.76 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCC--------------C------Cc-hHHHHHHHHHHHHHHHhc
Q 035755 21 SQVKAAYKRKVWECHPDLFPV--------------G------RK-TDAESKFKLISEAYTYLL 62 (72)
Q Consensus 21 ~~ik~~yr~l~~~~hPDk~~~--------------~------~~-~~~~~~~~~i~~Ay~~L~ 62 (72)
.++|..|.-+-..+||.+... . .+ -.....|+.|++.|+.++
T Consensus 387 qe~kdLY~iLEveF~PL~l~k~lq~ll~~ls~~~~~~QYI~sLq~v~~~RllqQvSqiY~sIs 449 (988)
T KOG2072|consen 387 QEVKDLYNILEVEFHPLKLCKKLQPLLDKLSESPDKSQYIPSLQDVIILRLLQQVSQIYESIS 449 (988)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777765210 0 11 235566888999998876
No 142
>TIGR02293 TAS_TIGR02293 putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module.
Probab=21.44 E-value=93 Score=18.11 Aligned_cols=17 Identities=6% Similarity=-0.117 Sum_probs=9.0
Q ss_pred HHHHHHHhcChhccchhc
Q 035755 54 ISEAYTYLLSGNFHLFTF 71 (72)
Q Consensus 54 i~~Ay~~L~d~~~R~~~~ 71 (72)
+..|..+++++ .+...|
T Consensus 78 ~~~a~~vfg~~-~~a~~W 94 (133)
T TIGR02293 78 WKAAVDVFGGD-AEARQW 94 (133)
T ss_pred HHHHHHHHCCH-HHHHHH
Confidence 34456666666 444443
No 143
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=20.86 E-value=40 Score=18.12 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=7.6
Q ss_pred CHHHHHHHHHH
Q 035755 19 NASQVKAAYKR 29 (72)
Q Consensus 19 ~~~~ik~~yr~ 29 (72)
+..+||.+||+
T Consensus 64 Ti~QIK~aYRq 74 (74)
T PF10769_consen 64 TIKQIKTAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 45678888874
No 144
>PF07710 P53_tetramer: P53 tetramerisation motif; InterPro: IPR010991 The p53 protein is a tetrameric transcription factor that plays a central role in the prevention of neoplastic transformation []. Oligomerization appears to be essential for the tumour suppressing activity of p53. p53 can be divided into different functional domains: an N-terminal transactivation domain, a proline-rich domain, a DNA-binding domain (IPR008967 from INTERPRO), a tetramerisation domain and a C-terminal regulatory region. The tetramerisation domain of human p53 extends from residues 325 to 356, and has a 4-helical bundle fold. The tetramerisation domain is essential for DNA binding, protein-protein interactions, post-translational modifications, and p53 degradation [].; GO: 0051262 protein tetramerization; PDB: 3Q06_B 1SAL_B 1OLH_B 1AIE_A 1PES_D 1SAK_D 1SAE_B 2J11_D 1PET_A 1OLG_A ....
Probab=20.85 E-value=1.2e+02 Score=14.49 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 035755 45 TDAESKFKLISEAYTYLL 62 (72)
Q Consensus 45 ~~~~~~~~~i~~Ay~~L~ 62 (72)
.+.-+.+..|++|.+...
T Consensus 18 Re~yE~l~kine~LEL~d 35 (42)
T PF07710_consen 18 RERYEMLKKINEALELMD 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456788999999998764
No 145
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=20.69 E-value=1.3e+02 Score=20.68 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=22.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 035755 12 FPPNSRPNASQVKAAYKRKVWECHPDLFP 40 (72)
Q Consensus 12 l~~~~~~~~~~ik~~yr~l~~~~hPDk~~ 40 (72)
++++- +.+++=+|.+..--.+|||...
T Consensus 62 ~~p~~--t~~~lW~Akkl~dS~~HPDTgE 88 (328)
T KOG3767|consen 62 VPPGL--TDDELWKAKKLYDSTFHPDTGE 88 (328)
T ss_pred cCCCC--cHHHHHHHHHHHhcccCCCCCC
Confidence 45554 8999999999999999999853
No 146
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=20.67 E-value=54 Score=19.35 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHHH
Q 035755 19 NASQVKAAYKRKVWE 33 (72)
Q Consensus 19 ~~~~ik~~yr~l~~~ 33 (72)
.+..+.++|+.|-..
T Consensus 48 NpnTv~raY~eLE~e 62 (125)
T COG1725 48 NPNTVQRAYQELERE 62 (125)
T ss_pred CHHHHHHHHHHHHHC
Confidence 445589999988764
No 147
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=20.56 E-value=1.4e+02 Score=19.53 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCh
Q 035755 52 KLISEAYTYLLSG 64 (72)
Q Consensus 52 ~~i~~Ay~~L~d~ 64 (72)
..|.|||++|.|.
T Consensus 105 ~~vIEAYrtLRDR 117 (228)
T PF12481_consen 105 MFVIEAYRTLRDR 117 (228)
T ss_pred hhHHHHHHHhhcc
Confidence 3578999999874
No 148
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=20.54 E-value=83 Score=17.02 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=20.8
Q ss_pred hhhhhCCCCCCCC-CHHHHHHHHHHHHH
Q 035755 6 ARVLLGFPPNSRP-NASQVKAAYKRKVW 32 (72)
Q Consensus 6 ~y~iLgl~~~~~~-~~~~ik~~yr~l~~ 32 (72)
-|.+.|++..... +.+++.++++++..
T Consensus 12 gFrLaGv~~~~~~~~~ee~~~~l~~l~~ 39 (95)
T PF01990_consen 12 GFRLAGVEGVYVNTDPEEAEEALKELLK 39 (95)
T ss_dssp HHHHTTSEEEEESHSHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccCCCCHHHHHHHHHHHhc
Confidence 4667787766544 88999999999885
No 149
>smart00360 RRM RNA recognition motif.
Probab=20.35 E-value=1.1e+02 Score=13.94 Aligned_cols=20 Identities=10% Similarity=0.358 Sum_probs=15.5
Q ss_pred hCCCCCCCCCHHHHHHHHHHHH
Q 035755 10 LGFPPNSRPNASQVKAAYKRKV 31 (72)
Q Consensus 10 Lgl~~~~~~~~~~ik~~yr~l~ 31 (72)
-||+... +.++|+..+....
T Consensus 2 ~~l~~~~--~~~~l~~~f~~~g 21 (71)
T smart00360 2 GNLPPDV--TEEELRELFSKFG 21 (71)
T ss_pred CCCCccc--CHHHHHHHHHhhC
Confidence 3677777 9999999887654
No 150
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=20.22 E-value=57 Score=13.85 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=10.9
Q ss_pred hhhhCCCCCCCCCHHHHHHHHHH
Q 035755 7 RVLLGFPPNSRPNASQVKAAYKR 29 (72)
Q Consensus 7 y~iLgl~~~~~~~~~~ik~~yr~ 29 (72)
+..+..+.+-.++.+|.+...++
T Consensus 6 F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 6 FREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHCCCCCCcCCHHHHHHHHHh
Confidence 34444444444555555555443
Done!