Query 035755
Match_columns 72
No_of_seqs 120 out of 1031
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:58:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035755hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.9 3.8E-24 1.3E-28 115.8 6.6 65 1-69 4-68 (79)
2 2yua_A Williams-beuren syndrom 99.9 5.1E-24 1.7E-28 119.7 7.0 65 1-69 14-78 (99)
3 2ys8_A RAB-related GTP-binding 99.9 3.7E-24 1.3E-28 118.6 5.9 62 2-68 25-86 (90)
4 2ctp_A DNAJ homolog subfamily 99.9 6.1E-24 2.1E-28 114.8 6.5 64 1-69 4-67 (78)
5 2ctr_A DNAJ homolog subfamily 99.9 1.4E-23 4.7E-28 115.8 7.2 63 2-69 5-67 (88)
6 1hdj_A Human HSP40, HDJ-1; mol 99.9 1.3E-23 4.4E-28 113.2 6.4 62 3-69 2-63 (77)
7 2ctq_A DNAJ homolog subfamily 99.9 2.2E-23 7.5E-28 119.4 6.4 63 2-68 18-80 (112)
8 1wjz_A 1700030A21RIK protein; 99.9 6.8E-24 2.3E-28 117.9 4.0 66 1-68 13-82 (94)
9 2ctw_A DNAJ homolog subfamily 99.9 4.2E-23 1.4E-27 117.8 7.3 64 2-69 15-78 (109)
10 2cug_A Mkiaa0962 protein; DNAJ 99.9 3.9E-23 1.3E-27 113.9 6.4 61 3-68 16-76 (88)
11 2ej7_A HCG3 gene; HCG3 protein 99.9 5.3E-23 1.8E-27 111.9 6.5 63 3-68 8-70 (82)
12 2och_A Hypothetical protein DN 99.9 1.3E-22 4.5E-27 108.4 7.0 60 2-68 6-65 (73)
13 2lgw_A DNAJ homolog subfamily 99.9 1.5E-22 5E-27 114.0 7.0 63 4-69 2-64 (99)
14 2dmx_A DNAJ homolog subfamily 99.9 1E-22 3.6E-27 112.9 6.2 64 3-69 8-71 (92)
15 2o37_A Protein SIS1; HSP40, J- 99.9 2.1E-22 7.2E-27 111.8 7.0 61 2-69 6-66 (92)
16 1iur_A KIAA0730 protein; DNAJ 99.9 5.4E-23 1.8E-27 113.8 4.5 64 1-67 13-76 (88)
17 2l6l_A DNAJ homolog subfamily 99.9 3.4E-22 1.2E-26 119.6 7.2 68 1-70 7-78 (155)
18 1bq0_A DNAJ, HSP40; chaperone, 99.9 6.6E-23 2.3E-27 115.8 2.6 63 3-69 2-64 (103)
19 3hho_A CO-chaperone protein HS 99.9 4.4E-22 1.5E-26 121.4 5.8 68 3-70 3-73 (174)
20 2guz_A Mitochondrial import in 99.9 8.7E-22 3E-26 104.9 5.4 59 1-67 11-70 (71)
21 1faf_A Large T antigen; J doma 99.8 7.8E-22 2.7E-26 107.1 4.4 58 3-68 10-69 (79)
22 3apq_A DNAJ homolog subfamily 99.8 1.4E-21 4.7E-26 120.2 5.8 61 4-68 2-62 (210)
23 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.6E-21 5.3E-26 111.1 4.8 66 2-68 13-79 (109)
24 1fpo_A HSC20, chaperone protei 99.8 2.1E-21 7.3E-26 118.1 5.3 66 5-70 2-70 (171)
25 3bvo_A CO-chaperone protein HS 99.8 3.9E-21 1.3E-25 120.0 5.5 68 3-70 42-112 (207)
26 3lz8_A Putative chaperone DNAJ 99.8 3.4E-22 1.2E-26 131.6 0.0 64 1-69 25-88 (329)
27 1gh6_A Large T antigen; tumor 99.8 9.6E-22 3.3E-26 113.1 1.5 59 3-69 7-67 (114)
28 1n4c_A Auxilin; four helix bun 99.8 8E-21 2.7E-25 116.6 4.4 64 4-69 117-181 (182)
29 2qwo_B Putative tyrosine-prote 99.8 7.9E-21 2.7E-25 105.8 3.0 58 4-63 33-91 (92)
30 3ag7_A Putative uncharacterize 99.8 7.8E-21 2.7E-25 108.1 2.1 60 3-65 40-104 (106)
31 2pf4_E Small T antigen; PP2A, 99.8 2.1E-20 7.3E-25 114.1 1.1 60 3-68 10-69 (174)
32 3uo3_A J-type CO-chaperone JAC 99.8 1.6E-19 5.4E-24 110.8 1.9 61 3-70 10-77 (181)
33 3apo_A DNAJ homolog subfamily 99.7 7.9E-19 2.7E-23 123.6 0.8 63 3-69 20-82 (780)
34 2guz_B Mitochondrial import in 99.5 4.8E-14 1.6E-18 73.9 5.5 56 1-64 1-59 (65)
35 2y4t_A DNAJ homolog subfamily 99.3 1.1E-12 3.6E-17 85.0 4.6 65 4-70 382-447 (450)
36 2pzi_A Probable serine/threoni 93.4 0.049 1.7E-06 38.0 2.7 45 4-60 629-675 (681)
37 1hry_A Human SRY; DNA, DNA-bin 72.9 4.6 0.00016 20.2 3.2 40 23-69 15-54 (76)
38 4a3n_A Transcription factor SO 72.3 2.7 9.1E-05 20.7 2.1 40 23-69 13-52 (71)
39 1wz6_A HMG-box transcription f 68.9 6.2 0.00021 20.0 3.2 40 23-69 18-57 (82)
40 1hme_A High mobility group pro 68.6 6.5 0.00022 19.6 3.2 40 23-69 17-56 (77)
41 3f27_D Transcription factor SO 66.2 4.7 0.00016 20.5 2.3 40 23-69 17-56 (83)
42 1ckt_A High mobility group 1 p 64.6 10 0.00035 18.5 3.4 40 25-69 14-53 (71)
43 1k99_A Upstream binding factor 64.0 10 0.00034 20.2 3.5 40 23-69 21-60 (99)
44 2crj_A SWI/SNF-related matrix- 63.3 6.1 0.00021 20.6 2.5 40 23-69 18-57 (92)
45 1i11_A Transcription factor SO 61.1 5.8 0.0002 20.1 2.1 39 24-69 16-54 (81)
46 2cqn_A Formin-binding protein 58.6 17 0.00059 18.7 4.1 48 19-67 7-54 (77)
47 3u2b_C Transcription factor SO 58.5 6.8 0.00023 19.6 2.1 39 24-69 14-52 (79)
48 1wgf_A Upstream binding factor 58.2 6 0.0002 20.6 1.8 40 23-69 31-70 (90)
49 2e6o_A HMG box-containing prot 56.3 6.7 0.00023 20.2 1.8 40 23-69 28-67 (87)
50 1qqr_A Streptokinase domain B; 54.6 6.1 0.00021 22.9 1.6 30 7-38 35-64 (138)
51 2cs1_A PMS1 protein homolog 1; 53.3 7.2 0.00025 20.3 1.7 40 23-69 18-57 (92)
52 1gt0_D Transcription factor SO 51.2 5.8 0.0002 20.0 1.0 39 24-69 14-52 (80)
53 1j46_A SRY, sex-determining re 50.8 6.8 0.00023 20.1 1.3 40 23-69 15-54 (85)
54 3nm9_A HMG-D, high mobility gr 49.1 20 0.0007 17.6 3.0 34 23-63 14-47 (73)
55 2lef_A LEF-1 HMG, protein (lym 49.0 7.7 0.00026 19.9 1.3 39 24-69 14-52 (86)
56 2d7l_A WD repeat and HMG-box D 47.9 6.9 0.00024 20.2 1.0 41 23-69 16-56 (81)
57 1ug2_A 2610100B20RIK gene prod 47.3 15 0.00052 19.9 2.3 21 19-39 69-89 (95)
58 4euw_A Transcription factor SO 46.8 9.2 0.00032 20.6 1.5 40 23-69 40-79 (106)
59 2eqz_A High mobility group pro 45.4 18 0.0006 18.5 2.4 42 23-69 26-67 (86)
60 2xpn_B SPT6, chromatin structu 45.2 3.6 0.00012 16.9 -0.3 11 6-16 5-15 (26)
61 1xs0_A Inhibitor of vertebrate 45.1 12 0.00042 21.6 1.9 34 7-40 94-127 (136)
62 2co9_A Thymus high mobility gr 44.0 9.9 0.00034 20.3 1.3 39 24-69 29-67 (102)
63 1hkq_A REPA, replication prote 43.9 3.2 0.00011 23.3 -0.7 28 3-32 50-77 (132)
64 2lxi_A RNA-binding protein 10; 41.1 28 0.00097 17.6 2.8 20 10-31 7-26 (91)
65 2xpp_B SPT6, chromatin structu 40.7 10 0.00035 17.2 0.8 11 6-16 24-34 (42)
66 2lr8_A CAsp8-associated protei 46.3 6 0.0002 20.4 0.0 20 19-38 49-68 (70)
67 2yrq_A High mobility group pro 37.2 32 0.0011 19.8 2.9 22 48-69 130-151 (173)
68 2ket_A Cathelicidin-6; antimic 34.5 28 0.00096 14.1 2.7 18 20-37 3-20 (27)
69 1zda_A Mini protein A domain, 33.9 13 0.00046 16.7 0.6 12 4-15 12-23 (38)
70 3tq6_A Transcription factor A, 32.7 31 0.0011 20.9 2.4 40 23-69 20-59 (214)
71 2gzk_A Sex-determining region 32.2 34 0.0012 19.3 2.4 40 23-69 99-138 (159)
72 2nqb_D Histone H2B; nucleosome 31.3 37 0.0013 19.3 2.3 15 27-41 39-53 (123)
73 1aab_A High mobility group pro 31.2 19 0.00066 18.1 1.1 42 23-69 18-59 (83)
74 4aj5_K Spindle and kinetochore 31.1 75 0.0026 18.0 5.0 44 19-62 20-63 (123)
75 3tmm_A Transcription factor A, 30.6 34 0.0012 21.0 2.3 39 24-69 53-91 (238)
76 1tzy_B Histone H2B; histone-fo 29.1 42 0.0014 19.1 2.3 15 27-41 42-56 (126)
77 1iqt_A AUF1, heterogeneous nuc 28.5 53 0.0018 15.4 2.8 19 10-30 5-23 (75)
78 2lhj_A High mobility group pro 28.5 13 0.00045 19.5 0.2 39 26-69 36-74 (97)
79 1l6x_B Minimized B-domain of p 27.8 13 0.00044 16.4 0.0 12 4-15 7-18 (34)
80 2ov6_A V-type ATP synthase sub 27.8 29 0.001 18.5 1.5 26 6-33 14-42 (101)
81 2gsv_A Hypothetical protein YV 26.2 73 0.0025 16.2 3.5 45 20-66 27-71 (80)
82 2i4r_A V-type ATP synthase sub 26.1 66 0.0023 17.2 2.8 28 6-33 23-51 (102)
83 3kp1_E D-ornithine aminomutase 24.8 68 0.0023 18.1 2.7 17 18-34 17-33 (121)
84 1l8y_A Upstream binding factor 24.4 59 0.002 17.2 2.3 37 25-69 17-53 (91)
85 1vq8_S 50S ribosomal protein L 24.2 47 0.0016 17.4 1.9 21 9-31 26-46 (85)
86 1dee_G Immunoglobulin G bindin 24.1 17 0.00057 17.7 0.0 13 4-16 7-19 (54)
87 3hm5_A DNA methyltransferase 1 24.1 89 0.003 16.7 3.0 20 19-38 68-87 (93)
88 1mdy_A Protein (MYOD BHLH doma 24.0 57 0.002 16.2 2.1 14 50-63 23-36 (68)
89 2lv7_A Calcium-binding protein 23.6 85 0.0029 16.1 2.9 25 6-30 41-65 (100)
90 2ql2_B Neurod1, neurogenic dif 23.4 62 0.0021 15.6 2.1 15 49-63 12-26 (60)
91 1cg7_A Protein (NON histone pr 23.4 36 0.0012 17.6 1.3 23 47-69 48-70 (93)
92 3r8s_T 50S ribosomal protein L 23.1 51 0.0018 17.5 1.9 19 10-30 32-50 (93)
93 1o7d_C Lysosomal alpha-mannosi 23.1 1.1E+02 0.0037 17.1 3.9 24 22-45 2-25 (159)
94 2jss_A Chimera of histone H2B. 22.4 1E+02 0.0035 18.4 3.3 16 26-41 8-23 (192)
95 2zjr_Q 50S ribosomal protein L 22.1 54 0.0019 17.5 1.9 21 9-31 26-46 (95)
96 2mss_A Protein (musashi1); RNA 21.9 67 0.0023 15.0 2.1 18 11-30 6-23 (75)
97 3u7d_B Protein HEG homolog 1; 21.8 22 0.00075 14.4 0.2 10 61-70 16-25 (26)
98 2hzc_A Splicing factor U2AF 65 21.6 81 0.0028 15.1 2.8 20 10-31 12-31 (87)
99 3j21_T 50S ribosomal protein L 21.6 57 0.002 17.1 1.9 21 9-31 27-47 (86)
100 1wxl_A Single-strand recogniti 21.2 77 0.0026 15.3 2.3 31 24-61 15-45 (73)
101 2juh_A Telomere binding protei 20.9 1.2E+02 0.0041 16.9 3.8 48 14-65 52-101 (121)
102 3k6g_D Telomeric repeat-bindin 20.9 68 0.0023 14.6 1.8 15 51-65 11-25 (42)
103 3tve_T 50S ribosomal protein L 20.6 61 0.0021 17.2 1.9 20 9-30 25-44 (92)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=3.8e-24 Score=115.77 Aligned_cols=65 Identities=26% Similarity=0.334 Sum_probs=59.4
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
+...|+|+||||++++ +..+|+++|+++++++|||+++.. +.+.+.|+.|++||++|+||.+|.-
T Consensus 4 ~~~~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~ 68 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNA--SQKEIKKAYYQLAKKYHPDTNKDD--PKAKEKFSQLAEAYEVLSDEVKRKQ 68 (79)
T ss_dssp SCCSCHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCSSC--TTHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CCCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 3568999999999999 999999999999999999999864 5788999999999999999998843
No 2
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=5.1e-24 Score=119.75 Aligned_cols=65 Identities=32% Similarity=0.440 Sum_probs=59.8
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|+..|||+||||++++ +.++|+++||++++++|||+++.+ +.+.+.|+.|++||++|+||.+|.-
T Consensus 14 ~~~~~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~ 78 (99)
T 2yua_A 14 YSRTALYDLLGVPSTA--TQAQIKAAYYRQCFLYHPDRNSGS--AEAAERFTRISQAYVVLGSATLRRK 78 (99)
T ss_dssp SCSSHHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTCSSC--SHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred CCccCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 4578999999999999 999999999999999999999864 6789999999999999999998843
No 3
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=3.7e-24 Score=118.63 Aligned_cols=62 Identities=26% Similarity=0.352 Sum_probs=57.7
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
...|+|+||||++++ +.++||++||++++++|||+++. +.+.+.|+.|++||++|+||.+|.
T Consensus 25 ~~~~~y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGA--SRDEVNKAYRKLAVLLHPDKCVA---PGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp TCSSHHHHHTCCTTC--CHHHHHHHHHHHHHHHCTTTCCC---TTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCccccc
Confidence 357999999999999 99999999999999999999987 567889999999999999999885
No 4
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=6.1e-24 Score=114.78 Aligned_cols=64 Identities=25% Similarity=0.325 Sum_probs=59.2
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
++..|+|+||||++++ +..+|+++|+++++++|||+++. +.+.+.|+.|++||++|+||.+|.-
T Consensus 4 ~~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~ 67 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGA--SDEDLKKAYRRLALKFHPDKNHA---PGATEAFKAIGTAYAVLSNPEKRKQ 67 (78)
T ss_dssp SCSCCHHHHHTCCTTC--CHHHHHHHHHHHHTTSCTTTCSS---HHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred CCCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHH
Confidence 3568999999999999 99999999999999999999987 7889999999999999999998843
No 5
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=115.77 Aligned_cols=63 Identities=32% Similarity=0.439 Sum_probs=58.8
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
+..|||+||||++++ +.++|+++|+++++++|||+++. +.+.+.|+.|++||++|+||.+|.-
T Consensus 5 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~ 67 (88)
T 2ctr_A 5 SSGSYYDILGVPKSA--SERQIKKAFHKLAMKYHPDKNKS---PDAEAKFREIAEAYETLSDANRRKE 67 (88)
T ss_dssp CCCSHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCCS---HHHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred CCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 467999999999999 99999999999999999999986 7889999999999999999998843
No 6
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.89 E-value=1.3e-23 Score=113.23 Aligned_cols=62 Identities=32% Similarity=0.459 Sum_probs=57.4
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..|+|+||||++++ +.++|+++|+++++++|||+++. +.+.+.|+.|++||++|+||.+|.-
T Consensus 2 ~~~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~ 63 (77)
T 1hdj_A 2 GKDYYQTLGLARGA--SDEEIKRAYRRQALRYHPDKNKE---PGAEEKFKEIAEAYDVLSDPRKREI 63 (77)
T ss_dssp CCCSHHHHTCCTTC--CHHHHHHHHHHHHHTTCTTTCCC---TTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHH
Confidence 46999999999999 99999999999999999999987 5688999999999999999998843
No 7
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-23 Score=119.41 Aligned_cols=63 Identities=27% Similarity=0.413 Sum_probs=58.4
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
...|||+||||++++ +.++||++||++++++|||+++++ +.+++.|+.|++||++|+||.+|.
T Consensus 18 ~~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~~R~ 80 (112)
T 2ctq_A 18 DTEDYYTLLGCDELS--SVEQILAEFKVRALECHPDKHPEN--PKAVETFQKLQKAKEILTNEESRA 80 (112)
T ss_dssp CCCCHHHHTTCCTTS--CHHHHHHHHHHHHHTTCTTTCTTC--STHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHHHHH
Confidence 358999999999999 999999999999999999999864 578999999999999999999884
No 8
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.89 E-value=6.8e-24 Score=117.92 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=59.1
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC----CchHHHHHHHHHHHHHHHhcChhccc
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVG----RKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~----~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
|+..|+|+||||++++ +..+||++|+++++++|||+++.. ..+.+.+.|+.|++||++|+||.+|.
T Consensus 13 ~~~~~~y~iLgv~~~a--s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 82 (94)
T 1wjz_A 13 TLKKDWYSILGADPSA--NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK 82 (94)
T ss_dssp SSCSCHHHHTTCCTTC--CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred CCCCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4568999999999999 999999999999999999998742 23578899999999999999999884
No 9
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=4.2e-23 Score=117.80 Aligned_cols=64 Identities=27% Similarity=0.437 Sum_probs=59.2
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
...|+|+||||++++ +.++||++|+++++++|||+++.+ +.+.+.|+.|++||++|+||.+|.-
T Consensus 15 ~~~~~Y~vLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~~R~~ 78 (109)
T 2ctw_A 15 SGESLYHVLGLDKNA--TSDDIKKSYRKLALKYHPDKNPDN--PEAADKFKEINNAHAILTDATKRNI 78 (109)
T ss_dssp CSCCHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTSTTC--HHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 457999999999999 999999999999999999999875 7889999999999999999998853
No 10
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=3.9e-23 Score=113.93 Aligned_cols=61 Identities=30% Similarity=0.384 Sum_probs=57.3
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
..|||+||||++++ +..+|+++||++++++|||+++. +.+++.|+.|++||++|+||.+|.
T Consensus 16 ~~d~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~ 76 (88)
T 2cug_A 16 DFDPYRVLGVSRTA--SQADIKKAYKKLAREWHPDKNKD---PGAEDRFIQISKAYEILSNEEKRT 76 (88)
T ss_dssp SSCHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTCCS---TTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHHCCHHHHH
Confidence 57999999999999 99999999999999999999987 568899999999999999999884
No 11
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=5.3e-23 Score=111.90 Aligned_cols=63 Identities=29% Similarity=0.434 Sum_probs=57.8
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
..|+|+||||++++ +.++|+++|+++++++|||+++.. .+.+++.|+.|++||++|+||.+|.
T Consensus 8 ~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~~R~ 70 (82)
T 2ej7_A 8 MVDYYEVLDVPRQA--SSEAIKKAYRKLALKWHPDKNPEN-KEEAERRFKQVAEAYEVLSDAKKRD 70 (82)
T ss_dssp SCCHHHHTTCCTTC--CHHHHHHHHHHHHTTSCTTTCSTT-HHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred CcCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 47999999999999 999999999999999999998764 3478899999999999999999884
No 12
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.88 E-value=1.3e-22 Score=108.38 Aligned_cols=60 Identities=30% Similarity=0.486 Sum_probs=55.2
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
...|||+||||++++ +..+|+++|+++++++|||++++. .+.|+.|++||++|+||.+|.
T Consensus 6 ~~~~~y~iLgl~~~a--~~~eIk~ayr~l~~~~HPD~~~~~-----~~~f~~i~~Ay~~L~d~~~R~ 65 (73)
T 2och_A 6 KETGYYDVLGVKPDA--SDNELKKAYRKMALKFHPDKNPDG-----AEQFKQISQAYEVLSDEKKRQ 65 (73)
T ss_dssp CCCCHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCTTC-----HHHHHHHHHHHHHHTSHHHHH
T ss_pred CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCcCH-----HHHHHHHHHHHHHHCCHHHHH
Confidence 457999999999999 999999999999999999998763 478999999999999999884
No 13
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=113.96 Aligned_cols=63 Identities=35% Similarity=0.474 Sum_probs=57.7
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.|||+||||++++ +.++||++|+++++++|||+++.. .+.+++.|+.|++||++|+||.+|.-
T Consensus 2 ~d~Y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~-~~~a~~~f~~I~~AY~vL~d~~~R~~ 64 (99)
T 2lgw_A 2 ASYYEILDVPRSA--SADDIKKAYRRKALQWHPDKNPDN-KEFAEKKFKEVAEAYEVLSDKHKREI 64 (99)
T ss_dssp CCHHHHSSSCTTS--CHHHHHHHHHHHHHHTSTTTCCSC-CHHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCcc-HHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 5899999999999 999999999999999999998764 35788999999999999999998843
No 14
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=112.90 Aligned_cols=64 Identities=33% Similarity=0.483 Sum_probs=58.3
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..|||+||||++++ +..+|+++|+++++++|||+++.. .+.+++.|+.|++||++|+||.+|.-
T Consensus 8 ~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~ 71 (92)
T 2dmx_A 8 MANYYEVLGVQASA--SPEDIKKAYRKLALRWHPDKNPDN-KEEAEKKFKLVSEAYEVLSDSKKRSL 71 (92)
T ss_dssp CCCHHHHHTCCTTC--CTTHHHHHHHHHHHHTCTTTCSSC-SHHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CcCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCcc-HHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 47999999999999 999999999999999999998764 25789999999999999999998843
No 15
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.1e-22 Score=111.83 Aligned_cols=61 Identities=30% Similarity=0.422 Sum_probs=55.8
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
...|+|+||||++++ +.++|+++|+++++++|||+++.+ .+.|+.|++||++|+||.+|.-
T Consensus 6 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~-----~~~f~~i~~Ay~~L~d~~~R~~ 66 (92)
T 2o37_A 6 KETKLYDLLGVSPSA--NEQELKKGYRKAALKYHPDKPTGD-----TEKFKEISEAFEILNDPQKREI 66 (92)
T ss_dssp SCCHHHHHHTCCTTC--CHHHHHHHHHHHHHHHCTTSTTCC-----HHHHHHHHHHHHHHTSHHHHHH
T ss_pred cCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCh-----HHHHHHHHHHHHHHCCHHHHHH
Confidence 568999999999999 999999999999999999999764 3689999999999999998853
No 16
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.87 E-value=5.4e-23 Score=113.76 Aligned_cols=64 Identities=20% Similarity=0.151 Sum_probs=57.4
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhcc
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH 67 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R 67 (72)
++..++|+||||++++ +.++||++||++++++|||+++++ .+.++++|+.|++||++|++...|
T Consensus 13 ~~~~~~y~vLgv~~~a--s~~eIKkaYrkla~~~HPDk~~~~-~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 13 SILKEVTSVVEQAWKL--PESERKKIIRRLYLKWHPDKNPEN-HDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp SCHHHHHHHHHHTTSS--CSHHHHHHHHHHHHHTCTTTSSSC-HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHHHHHHHHHhhccc
Confidence 3568999999999999 999999999999999999998874 256899999999999999997655
No 17
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=119.62 Aligned_cols=68 Identities=24% Similarity=0.297 Sum_probs=59.7
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC----chHHHHHHHHHHHHHHHhcChhccchh
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR----KTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~----~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
|...|||+||||++++ +.++||++||++++++|||+++... +..+.+.|..|++||++|+||.+|.-+
T Consensus 7 ~~~~~~y~iLgv~~~a--~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Y 78 (155)
T 2l6l_A 7 MPKKDWYSILGADPSA--NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREY 78 (155)
T ss_dssp CCCSHHHHHHTCCTTC--CHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHH
T ss_pred CCCCChhHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3567999999999999 9999999999999999999987642 235789999999999999999988543
No 18
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.86 E-value=6.6e-23 Score=115.84 Aligned_cols=63 Identities=30% Similarity=0.424 Sum_probs=57.9
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..|+|+||||++++ +.++||++||++++++|||+++.. +.+++.|+.|++||++|+||.+|.-
T Consensus 2 ~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~ 64 (103)
T 1bq0_A 2 KQDYYEILGVSKTA--EEREIRKAYKRLAMKYHPDRNQGD--KEAEAKFKEIKEAYEVLTDSQKRAA 64 (103)
T ss_dssp CCCSTTTTSSCSSC--CHHHHHHHHHHHHTTTCTTTCTTT--CTHHHHHHHHTTTTTSTTCSHHHHH
T ss_pred CCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 47999999999999 999999999999999999999864 5688999999999999999998843
No 19
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.86 E-value=4.4e-22 Score=121.41 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=59.0
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc---hHHHHHHHHHHHHHHHhcChhccchh
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRK---TDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~---~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
..|||+||||++++.++..+|+++||++++++|||++++... ..+.+.|..|++||++|+||.+|.-+
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Y 73 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEY 73 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 579999999999995559999999999999999999887532 23788999999999999999999654
No 20
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=8.7e-22 Score=104.94 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=53.2
Q ss_pred CcccchhhhhCCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhcc
Q 035755 1 MQGDEARVLLGFPP-NSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH 67 (72)
Q Consensus 1 ~~~~d~y~iLgl~~-~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R 67 (72)
|+..++|+||||++ ++ +.++|+++||++++++|||++++ .+.|++|++||++|+++..|
T Consensus 11 m~~~~~y~iLgl~~~~a--~~~eIk~ayr~l~~~~HPDk~g~------~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 11 MNSKEALQILNLTENTL--TKKKLKEVHRKIMLANHPDKGGS------PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CCHHHHHHHTTCCTTTC--CHHHHHHHHHHHHHHHCGGGTCC------HHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHcCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC------HHHHHHHHHHHHHHhhhhhc
Confidence 66789999999999 68 99999999999999999999654 36899999999999998765
No 21
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.85 E-value=7.8e-22 Score=107.07 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=53.2
Q ss_pred ccchhhhhCCCCC--CCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 3 GDEARVLLGFPPN--SRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 3 ~~d~y~iLgl~~~--~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
..++|+||||+++ + +..+||++||++++++|||++++ .++|++|++||++|+++.+|.
T Consensus 10 ~~~~y~iLgl~~~~~a--~~~eIk~aYr~la~~~HPDk~~~------~~~f~~i~~AYe~L~~~~~r~ 69 (79)
T 1faf_A 10 KERLLELLKLPRQLWG--DFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTEVYNL 69 (79)
T ss_dssp HHHHHHHHTCCSSSTT--CHHHHHHHHHHHHHHSSGGGSCC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC------HHHHHHHHHHHHHHhhHHHHH
Confidence 4689999999999 8 99999999999999999999765 478999999999999998774
No 22
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.85 E-value=1.4e-21 Score=120.19 Aligned_cols=61 Identities=25% Similarity=0.431 Sum_probs=57.3
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
.|||+||||++++ +.++||++||++++++|||+++.+ +.+.++|+.|++||++|+||.+|.
T Consensus 2 ~~~y~~l~~~~~a--~~~~ik~ay~~l~~~~HPD~~~~~--~~~~~~f~~i~~Ay~~L~~~~~r~ 62 (210)
T 3apq_A 2 QNFYSLLGVSKTA--SSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDLRK 62 (210)
T ss_dssp CCHHHHHTCCTTC--CHHHHHHHHHHHHHHHCGGGCTTC--TTHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6899999999999 999999999999999999999865 678899999999999999999884
No 23
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.84 E-value=1.6e-21 Score=111.06 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=58.6
Q ss_pred cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPV-GRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~-~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
...|+|+||||++++ ++.++|+++||++++++|||++++ ...+.+.+.|+.|++||++|+||.+|.
T Consensus 13 ~~~~~y~iLgv~~~a-~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~ 79 (109)
T 2qsa_A 13 GLENCYDVLEVNREE-FDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT 79 (109)
T ss_dssp TTSCHHHHTTCCGGG-CCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHcCCCCCC-CCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 357999999999984 599999999999999999999885 334678999999999999999999884
No 24
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.84 E-value=2.1e-21 Score=118.12 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=58.5
Q ss_pred chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchh
Q 035755 5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
|||+||||++++.++..+|+++||++++++|||++++.. +..+.+.|..|++||++|+||.+|.-+
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Y 70 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEY 70 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 899999999998889999999999999999999988742 234678999999999999999999543
No 25
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.83 E-value=3.9e-21 Score=119.97 Aligned_cols=68 Identities=21% Similarity=0.265 Sum_probs=58.6
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchh
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
..|||+||||++++.++..+|+++||++++++|||++++.. +..+.+.|..|++||++|+||.+|.-+
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Y 112 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLY 112 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 46899999999985459999999999999999999988642 234778999999999999999999544
No 26
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.83 E-value=3.4e-22 Score=131.57 Aligned_cols=64 Identities=31% Similarity=0.467 Sum_probs=0.0
Q ss_pred CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
|+.+|||+||||++++ +.++||++||++++++|||+++. +.++++|++|++||++|+||.+|.-
T Consensus 25 m~~~d~Y~vLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~ 88 (329)
T 3lz8_A 25 MELKDYYAILGVQPTD--DLKTIKTAYRRLARKYHPDVSKE---NDAEAKFKDLAEAWEVLKDEQRRAE 88 (329)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCCCCCCC---hHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 5678999999999999 99999999999999999999886 5788999999999999999998853
No 27
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.82 E-value=9.6e-22 Score=113.13 Aligned_cols=59 Identities=25% Similarity=0.254 Sum_probs=53.9
Q ss_pred ccchhhhhCCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNA--SQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~--~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..++|+||||++++ +. .+||++||++++++|||+++. .++|++|++||++|+||.+|.-
T Consensus 7 ~~~~Y~iLgv~~~a--s~~~~eIk~aYr~la~~~HPDk~~~------~e~f~~I~~AYevL~d~~~R~~ 67 (114)
T 1gh6_A 7 SLQLMDLLGLERSA--WGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAH 67 (114)
T ss_dssp HHHHHHHTTCCTTS--CSCHHHHHHHHHHTTTTCCTTTCCT------TTTTHHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHcCCCCCC--CcCHHHHHHHHHHHHHHHCCCCCcc------HHHHHHHHHHHHHHCCHHHHHH
Confidence 46899999999999 77 999999999999999999876 3789999999999999998853
No 28
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.82 E-value=8e-21 Score=116.62 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=57.5
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHHHHhcChhccch
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRK-TDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~-~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.|+|+||||++++ +..+||++||++++++|||++++... ..+++.|+.|++||++|+|+.+|.-
T Consensus 117 ~d~Y~vLgv~~~A--s~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~ 181 (182)
T 1n4c_A 117 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPL 181 (182)
T ss_dssp CCCCCCCCGGGGS--SHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cchhhcCCCCCCC--CHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhh
Confidence 6899999999999 99999999999999999999876422 2488999999999999999999864
No 29
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.81 E-value=7.9e-21 Score=105.77 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=52.1
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHHHHhcC
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRK-TDAESKFKLISEAYTYLLS 63 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~-~~~~~~~~~i~~Ay~~L~d 63 (72)
.++|++|||++.+ +..+||++||++++++|||+++++.. ..++++|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~a--s~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSS--SHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 4899999999999 99999999999999999999987532 3588999999999999975
No 30
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.80 E-value=7.8e-21 Score=108.12 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=52.1
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-----chHHHHHHHHHHHHHHHhcChh
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR-----KTDAESKFKLISEAYTYLLSGN 65 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~-----~~~~~~~~~~i~~Ay~~L~d~~ 65 (72)
..|||+|||++. + +..+||++||++++++|||+++... +..++++|+.|++||++|+|+.
T Consensus 40 ~~d~Y~vl~~~~-A--s~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-I--EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-C--SHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-C--CHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 369999999996 7 9999999999999999999976311 2257899999999999999986
No 31
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.78 E-value=2.1e-20 Score=114.07 Aligned_cols=60 Identities=25% Similarity=0.242 Sum_probs=50.7
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL 68 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~ 68 (72)
..|+|+||||++++..+.++||++||++++++|||++++. ++|++|++||++|+||.+|.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~------e~F~~I~~AYevLsdp~kR~ 69 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE------EKMKKMNTLYKKMEDGVKYA 69 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC------TTTTHHHHHHHHHHHHHHHH
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH------HHHHHHHHHHHHhCCHHHHH
Confidence 4789999999999922279999999999999999998763 68999999999999999884
No 32
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.75 E-value=1.6e-19 Score=110.76 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=53.5
Q ss_pred ccchhhhh------CCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755 3 GDEARVLL------GFPP-NSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 3 ~~d~y~iL------gl~~-~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
..|||+|| |+++ ++ +..+|+++||++++++|||++++ +.+.|..|++||++|+||.+|.-+
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a--~~~eIk~aYr~la~~~HPDk~~~-----a~~~f~~i~~AY~vL~dp~~R~~Y 77 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTI--DQSRLRKEYRQLQAQHHPDMAQQ-----GSEQSSTLNQAYHTLKDPLRRSQY 77 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCC--CHHHHHHHHHHHHHTCCTTSCCS-----CSSGGGSHHHHHHHHHSHHHHHHH
T ss_pred CCCHHHHhccccccCCCCCCC--CHHHHHHHHHHHHHHhCcCCCcc-----HHHHHHHHHHHHHHHcChHHHHHH
Confidence 47999999 4665 56 99999999999999999999875 357899999999999999998654
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.71 E-value=7.9e-19 Score=123.62 Aligned_cols=63 Identities=24% Similarity=0.400 Sum_probs=35.3
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..|||+||||++++ +.++||++||++++++|||+++++ +.+.++|+.|++||++|+||.+|.-
T Consensus 20 ~~~~y~~lg~~~~a--~~~~i~~ay~~l~~~~hpd~~~~~--~~~~~~f~~i~~ay~~L~~~~~r~~ 82 (780)
T 3apo_A 20 DQNFYSLLGVSKTA--SSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDLRKK 82 (780)
T ss_dssp ---CHHHHTCCTTC--CHHHHHHHHCC-------------------------CTHHHHHHSHHHHHH
T ss_pred CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHHcChHHHHH
Confidence 47999999999999 999999999999999999999764 6788999999999999999998843
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.8e-14 Score=73.86 Aligned_cols=56 Identities=13% Similarity=-0.048 Sum_probs=49.7
Q ss_pred CcccchhhhhCCCCC---CCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcCh
Q 035755 1 MQGDEARVLLGFPPN---SRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSG 64 (72)
Q Consensus 1 ~~~~d~y~iLgl~~~---~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~ 64 (72)
|+..+.|.||||+++ + +.++|+++||++...+|||+.++ ......|++|.++|...
T Consensus 1 mt~~EA~~ILgv~~~~~~a--~~~~Ik~~yr~Lm~~nhPDkGGS------~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDL--NMDKINNRFNYLFEVNDKEKGGS------FYLQSKVYRAAERLKWE 59 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCC--SHHHHHHHHHHHHHHTCGGGTCC------HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcC--CHHHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHHHHHH
Confidence 788899999999999 8 99999999999999999999776 36667899999998643
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.33 E-value=1.1e-12 Score=85.04 Aligned_cols=65 Identities=26% Similarity=0.330 Sum_probs=56.4
Q ss_pred cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-chHHHHHHHHHHHHHHHhcChhccchh
Q 035755 4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR-KTDAESKFKLISEAYTYLLSGNFHLFT 70 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~-~~~~~~~~~~i~~Ay~~L~d~~~R~~~ 70 (72)
.++|.+||+..++ +..+|+++|+++++++|||+.+... +..+++.|+.|++||++|+||.+|..+
T Consensus 382 ~~~y~~lg~~~~~--~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~y 447 (450)
T 2y4t_A 382 RDYYKILGVKRNA--KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKF 447 (450)
T ss_dssp CCSGGGSCSSTTC--CTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC---
T ss_pred hhHHHHhCCCccC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhc
Confidence 4899999999999 9999999999999999999987632 356889999999999999999998543
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.37 E-value=0.049 Score=38.02 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=34.1
Q ss_pred cchhhhhCCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHH
Q 035755 4 DEARVLLGFPPNSRPNA--SQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60 (72)
Q Consensus 4 ~d~y~iLgl~~~~~~~~--~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~ 60 (72)
.|+|.+||++... .. .+|+++||++++..+++ .+++..|..|..|
T Consensus 629 ~~~~~~lG~~~~~--~~lr~~~~~ayr~la~~~~~~----------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 629 ASTNHILGFPFTS--HGLRLGVEASLRSLARVAPTQ----------RHRYTLVDMANKV 675 (681)
T ss_dssp CSSSEETTEESSH--HHHHHHHHHHHHHHHHHCSSH----------HHHHHHHHHHHHH
T ss_pred CCCcccCCCCCCh--HHHHHHHHHHHHHHHHhCCCh----------HHHHHHHHHhccc
Confidence 5689999997655 44 66999999999976444 3677788888765
No 37
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=72.92 E-value=4.6 Score=20.17 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+.+|..++.-||+.... +..+.|.+.|..|++..+..|
T Consensus 15 f~~~~r~~~~~~~p~~~~~-------eisk~lg~~Wk~ls~~eK~~y 54 (76)
T 1hry_A 15 WSRDQRRKMALENPRMRNS-------EISKQLGYQWKMLTEAEKWPF 54 (76)
T ss_dssp HHHHHHHHHHHHCSCCSSS-------HHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCCHH-------HHHHHHHhHHHhCCHHHHHHH
Confidence 3455677777788986544 556778888888887766554
No 38
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=72.31 E-value=2.7 Score=20.69 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+.+|..++.-||+... .+..+.|.+.|..|++..+..|
T Consensus 13 f~~~~r~~~~~~~p~~~~-------~eisk~lg~~Wk~ls~~eK~~y 52 (71)
T 4a3n_A 13 WAKDERKRLAQQNPDLHN-------AELSKMLGKSWKALTLAEKRPF 52 (71)
T ss_dssp HHHHHHHHHHTTCTTSCH-------HHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Confidence 345567777777887542 3667788889999987776655
No 39
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=68.94 E-value=6.2 Score=20.03 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+.+|..++.-||+.... +..+.|.+.|..|++..+..|
T Consensus 18 f~~~~r~~~~~~~p~~~~~-------eisk~lg~~Wk~ls~~eK~~y 57 (82)
T 1wz6_A 18 FCKRHRSLVRQEHPRLDNR-------GATKILADWWAVLDPKEKQKY 57 (82)
T ss_dssp HHHHHHHHHHHHCSSSCTT-------HHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHhhCCHHHHHHH
Confidence 4556677778888986544 556778888888887766554
No 40
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=68.60 E-value=6.5 Score=19.63 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+..|...+.-||+.. ..+..+.|.+.|..|++..+..|
T Consensus 17 f~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~~eK~~y 56 (77)
T 1hme_A 17 FCSEYRPKIKGEHPGLS-------IGDVAKKLGEMWNNTAADDKQPY 56 (77)
T ss_dssp HHHHHHHHHHHHCTTCC-------HHHHHHHHHHHHHHSCGGGSHHH
T ss_pred HHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHhCCHHHHHHH
Confidence 34556666677788743 23667889999999998877655
No 41
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=66.17 E-value=4.7 Score=20.51 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+.+|..++.-||+... .+..+.|.+.|..|++..+..|
T Consensus 17 f~~~~r~~~~~~~p~~~~-------~eisk~lg~~Wk~ls~~eK~~y 56 (83)
T 3f27_D 17 WAKDERKRLAQQNPDLHN-------AELSKMLGKSWKALTLAEKRPF 56 (83)
T ss_dssp HHHHHHHHHHHHCSSSCH-------HHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Confidence 355667777888888543 3667778888998887766554
No 42
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=64.60 E-value=10 Score=18.50 Aligned_cols=40 Identities=18% Similarity=0.075 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 25 AAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 25 ~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
+..|...+.-||+...+ ..+..+.|.+.|..|++..+..|
T Consensus 14 ~~~r~~~~~~~p~~~~~-----~~eisk~lg~~Wk~ls~~eK~~y 53 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVN-----FSEFSKKCSERWKTMSAKEKGKF 53 (71)
T ss_dssp HHHHHHHHHHCTTCCCC-----HHHHHHHHHHHHHTCCTTTSHHH
T ss_pred HHHHHHHHHHCCCCCCc-----HHHHHHHHHHHHhhCCHHHHHHH
Confidence 34555666778886431 23667788999999998877655
No 43
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=64.02 E-value=10 Score=20.19 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+..|...+.-+|+... .+..+.|.+.|..|++..+..|
T Consensus 21 F~~~~r~~ik~~~P~~~~-------~eisk~lg~~Wk~ls~eeK~~Y 60 (99)
T 1k99_A 21 FFMEKRAKYAKLHPEMSN-------LDLTKILSKKYKELPEKKKMKY 60 (99)
T ss_dssp HHHHHHHHHHTTCTTSCS-------HHHHHHHHHHHHHSCSTTHHHH
T ss_pred HHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHhCCHHHHHHH
Confidence 345556667777787543 3667789999999998877655
No 44
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=63.27 E-value=6.1 Score=20.64 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+.+|..++.-||+... .+..+.|.+.|..|++..+..|
T Consensus 18 F~~~~r~~~~~~~p~~~~-------~eisk~lg~~Wk~ls~eeK~~Y 57 (92)
T 2crj_A 18 FLNERREQIRTRHPDLPF-------PEITKMLGAEWSKLQPAEKQRY 57 (92)
T ss_dssp HHHHHHHHHHHHCTTCCH-------HHHHHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Confidence 345566777777887432 3667788888998888776655
No 45
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=61.15 E-value=5.8 Score=20.10 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 24 KAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 24 k~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+.++..++.-||+.. ..+..+.|.+.|..|++..+..|
T Consensus 16 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~eeK~~y 54 (81)
T 1i11_A 16 AKDERRKILQAFPDMH-------NSNISKILGSRWKAMTNLEKQPY 54 (81)
T ss_dssp HHHHHHHHHTTCSSCC-------HHHHHHHHHHHHTTSCSGGGHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHhhhhhCCHHHHHHH
Confidence 4455666666677643 23667788889999998777655
No 46
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=58.60 E-value=17 Score=18.68 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhcc
Q 035755 19 NASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH 67 (72)
Q Consensus 19 ~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R 67 (72)
-...++..|+.+.+...|.......=..+...|..-. +|..+.++..|
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR 54 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESER 54 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHH
Confidence 5678899999999999887766643234444554433 68888776554
No 47
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=58.49 E-value=6.8 Score=19.61 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 24 KAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 24 k~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+.+|..++.-||+... .+..+.|.+.|..|++..+..|
T Consensus 14 ~~~~r~~~~~~~p~~~~-------~eisk~lg~~Wk~ls~~eK~~y 52 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMHN-------AEISKRLGKRWKLLKDSDKIPF 52 (79)
T ss_dssp HHHHHHHHHTTSTTSCH-------HHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCH-------HHHHHHHHHHHHhCCHHHHHHH
Confidence 44566666777776432 3567778888888887766544
No 48
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=58.15 E-value=6 Score=20.62 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+.+|...+.-||+... .+..+.|.+.|..|++..+..|
T Consensus 31 F~~~~r~~~k~~~P~~~~-------~eisk~lg~~Wk~ls~eeK~~Y 70 (90)
T 1wgf_A 31 FSEEKRRQLQEERPELSE-------SELTRLLARMWNDLSEKKKAKY 70 (90)
T ss_dssp HHHHTHHHHHHHCTTSCH-------HHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHhCCHHHHHHH
Confidence 345566777777888432 3667788999999998776655
No 49
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=56.32 E-value=6.7 Score=20.24 Aligned_cols=40 Identities=5% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+.+|..++.-||+... .+..+.|.+.|..|++..+..|
T Consensus 28 f~~~~r~~~~~~~P~~~~-------~eisk~lg~~Wk~ls~eeK~~y 67 (87)
T 2e6o_A 28 FAKKYRVEYTQMYPGKDN-------RAISVILGDRWKKMKNEERRMY 67 (87)
T ss_dssp HHHHTHHHHHHHCTTSCH-------HHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHhhCCHHHHHHH
Confidence 445566677777887432 3566778889999987776655
No 50
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=54.65 E-value=6.1 Score=22.90 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=23.5
Q ss_pred hhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 035755 7 RVLLGFPPNSRPNASQVKAAYKRKVWECHPDL 38 (72)
Q Consensus 7 y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk 38 (72)
+..+.|...- +.++++++-..+..++||+-
T Consensus 35 l~~k~ig~~I--ts~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 35 LKTLAIGDTI--TSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEECTTCEE--EHHHHHHHHHHHHHHHSTTE
T ss_pred hcccccCccc--CHHHHHHHHHHHHHhcCCCc
Confidence 3444555444 99999999999999999984
No 51
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.35 E-value=7.2 Score=20.35 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+..|...+.-||+.. ..+..+.|.+.|..|++..+..|
T Consensus 18 F~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~eeK~~y 57 (92)
T 2cs1_A 18 FVQDHRPQFLIENPKTS-------LEDATLQIEELWKTLSEEEKLKY 57 (92)
T ss_dssp HHHHHHHHHHHHCCSSC-------HHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC-------HHHHHHHHHHHHhcCCHHHHHHH
Confidence 34556777777788753 23667788888988887776655
No 52
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=51.21 E-value=5.8 Score=20.03 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 24 KAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 24 k~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+.+|..++.-||+... .+..+.|.+.|..|++..+..|
T Consensus 14 ~~~~r~~~~~~~p~~~~-------~eisk~lg~~Wk~ls~eeK~~y 52 (80)
T 1gt0_D 14 SRGQRRKMAQENPKMHN-------SEISKRLGAEWKLLSETEKRPF 52 (80)
T ss_dssp HHHHHHHHHTTSTTSCH-------HHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHhCCHHHHHHH
Confidence 34556666667777432 3556778888888887766544
No 53
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=50.83 E-value=6.8 Score=20.11 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+.+|..++.-||+... .+..+.|.+.|..|++..+..|
T Consensus 15 f~~~~r~~~~~~~P~~~~-------~eisk~lg~~Wk~ls~eeK~~y 54 (85)
T 1j46_A 15 WSRDQRRKMALENPRMRN-------SEISKQLGYQWKMLTEAEKWPF 54 (85)
T ss_dssp HHHHHHHHHHHHSTTSCH-------HHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHCCHHHHHHH
Confidence 345566666777887532 2556778888888887665544
No 54
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=49.11 E-value=20 Score=17.57 Aligned_cols=34 Identities=9% Similarity=-0.007 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLS 63 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d 63 (72)
..+.+|...+.-||+... .+..+.|.+.|..|++
T Consensus 14 f~~~~r~~~~~~~p~~~~-------~eisk~lg~~Wk~ls~ 47 (73)
T 3nm9_A 14 WLNSARESIKRENPGIKV-------TEVAKRGGELWRAMKD 47 (73)
T ss_dssp HHHHHHHHHHHHSSSCCH-------HHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHcCCc
Confidence 345556667777887542 3666778888888876
No 55
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=49.03 E-value=7.7 Score=19.89 Aligned_cols=39 Identities=5% Similarity=-0.038 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 24 KAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 24 k~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+.+|..++.-||+... .+....|.+.|..|++..+..|
T Consensus 14 ~~~~r~~~~~~~P~~~~-------~eisk~lg~~Wk~ls~eeK~~y 52 (86)
T 2lef_A 14 MKEMRANVVAESTLKES-------AAINQILGRRWHALSREEQAKY 52 (86)
T ss_dssp HHHHHHHHHHHSSCCCH-------HHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Confidence 44556666777887532 3556778888888887766544
No 56
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.93 E-value=6.9 Score=20.22 Aligned_cols=41 Identities=10% Similarity=0.060 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.-+.+|...+.-||+.. + ..+..+.|.+.|..|++..+..|
T Consensus 16 F~~e~R~~ik~~~P~~~-~-----~~eisK~lge~Wk~ls~eeK~~y 56 (81)
T 2d7l_A 16 WLEENRSNILSDNPDFS-D-----EADIIKEGMIRFRVLSTEERKVW 56 (81)
T ss_dssp HHHHHHHHHHHHCTTCC-S-----HHHHHHHHHHHHSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCc-h-----hHHHHHHHHHHHHcCCHHHHHHH
Confidence 45566777888899864 1 23667778888888887766554
No 57
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=47.33 E-value=15 Score=19.91 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCC
Q 035755 19 NASQVKAAYKRKVWECHPDLF 39 (72)
Q Consensus 19 ~~~~ik~~yr~l~~~~hPDk~ 39 (72)
++.+|+.+|+.|++.+|--+.
T Consensus 69 s~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 69 TPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHHHHHHhc
Confidence 888999999999998876554
No 58
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=46.81 E-value=9.2 Score=20.58 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+.+|...+.-||+... .+..+.|.+.|..|++..+..|
T Consensus 40 F~~~~r~~~k~~~P~~~~-------~eisk~lg~~Wk~ls~eeK~~Y 79 (106)
T 4euw_A 40 WAQAARRKLADQYPHLHN-------AELSKTLGKLWRLLNESEKRPF 79 (106)
T ss_dssp HHHHHHHHHHHHCTTSCH-------HHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Confidence 455667777777887532 3566778888888887766554
No 59
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.36 E-value=18 Score=18.49 Aligned_cols=42 Identities=12% Similarity=0.023 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+..|...+.-||+...+ ..+..+.|.+.|..|++..+..|
T Consensus 26 F~~~~r~~~k~~~p~~~~~-----~~eisk~lg~~Wk~ls~~eK~~y 67 (86)
T 2eqz_A 26 FVQTCREEHKKKNPEVPVN-----FAEFSKKCSERWKTMSGKEKSKF 67 (86)
T ss_dssp HHHHHHHHHHHHCTTSCCC-----HHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCc-----HHHHHHHHHHHHHhCCHHHHHHH
Confidence 3455666677778886532 13667788889999988776655
No 60
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=45.25 E-value=3.6 Score=16.91 Aligned_cols=11 Identities=9% Similarity=-0.037 Sum_probs=8.1
Q ss_pred hhhhhCCCCCC
Q 035755 6 ARVLLGFPPNS 16 (72)
Q Consensus 6 ~y~iLgl~~~~ 16 (72)
||+|+|.....
T Consensus 5 FyEIFGtG~EY 15 (26)
T 2xpn_B 5 FFEIFGTGEEY 15 (26)
T ss_pred EEEEecCCceE
Confidence 78899886543
No 61
>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli} SCOP: d.233.1.1 PDB: 1gpq_A
Probab=45.11 E-value=12 Score=21.57 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=27.8
Q ss_pred hhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 035755 7 RVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFP 40 (72)
Q Consensus 7 y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~ 40 (72)
|.-||.+...+++-..|-.+.-.=++..|||.+.
T Consensus 94 ~~WLG~Pd~~sidg~t~l~a~lt~sl~nhP~~f~ 127 (136)
T 1xs0_A 94 LTWLNVNDALSIDGKTVLFAALTGSLENHPDGFN 127 (136)
T ss_dssp EEEECSSCCCCHHHHHHHHHHHHTHHHHSTTSCC
T ss_pred eEecCCCChhhcccHHHHHHHHhcchhcCccccc
Confidence 5568997666677788899999999999999864
No 62
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.04 E-value=9.9 Score=20.25 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 24 KAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 24 k~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+.+|..++.-||+.. ..+..+.|.+.|..|++..+..|
T Consensus 29 ~~~~r~~i~~~~P~~~-------~~eisk~lg~~Wk~ls~eeK~~Y 67 (102)
T 2co9_A 29 FRDTQAAIKGQNPNAT-------FGEVSKIVASMWDGLGEEQKQVY 67 (102)
T ss_dssp HHHHHHHHHHHCTTSC-------HHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHccCCHHHHHHH
Confidence 4455666667788753 23556677777887877666554
No 63
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=43.94 E-value=3.2 Score=23.28 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=18.3
Q ss_pred ccchhhhhCCCCCCCCCHHHHHHHHHHHHH
Q 035755 3 GDEARVLLGFPPNSRPNASQVKAAYKRKVW 32 (72)
Q Consensus 3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~ 32 (72)
..|+.+++|++.+. .-.+++++..+|..
T Consensus 50 ~~e~~~~~~~~~~~--aY~~lk~a~~~L~~ 77 (132)
T 1hkq_A 50 ADTFAEVFGIDVKH--AYAALDDAATKLFN 77 (132)
T ss_dssp HHHHHHHTTCCHHH--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCcch--HHHHHHHHHHHHhh
Confidence 35666777777665 66667777666654
No 64
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=41.09 E-value=28 Score=17.56 Aligned_cols=20 Identities=5% Similarity=0.187 Sum_probs=17.4
Q ss_pred hCCCCCCCCCHHHHHHHHHHHH
Q 035755 10 LGFPPNSRPNASQVKAAYKRKV 31 (72)
Q Consensus 10 Lgl~~~~~~~~~~ik~~yr~l~ 31 (72)
=|||.+. +.++|+..|.+..
T Consensus 7 ~nLp~~~--te~~l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAA--TEDDIRGQLQSHG 26 (91)
T ss_dssp ETCCSSC--CHHHHHHHHHHHT
T ss_pred eCCCCCC--CHHHHHHHHHHhC
Confidence 3899999 9999999998874
No 65
>2xpp_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi}
Probab=40.65 E-value=10 Score=17.20 Aligned_cols=11 Identities=9% Similarity=-0.037 Sum_probs=8.9
Q ss_pred hhhhhCCCCCC
Q 035755 6 ARVLLGFPPNS 16 (72)
Q Consensus 6 ~y~iLgl~~~~ 16 (72)
||+|+|.....
T Consensus 24 FyEIFG~G~EY 34 (42)
T 2xpp_B 24 FFEIFGTGEEY 34 (42)
T ss_dssp HHHHHTTSCTT
T ss_pred hhheccCCcee
Confidence 79999987654
No 66
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=46.31 E-value=6 Score=20.35 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHHhCCCC
Q 035755 19 NASQVKAAYKRKVWECHPDL 38 (72)
Q Consensus 19 ~~~~ik~~yr~l~~~~hPDk 38 (72)
++++|+.+|++|...+|-.+
T Consensus 49 s~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 49 NPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 66777777777777776544
No 67
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.21 E-value=32 Score=19.79 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhcChhccch
Q 035755 48 ESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 48 ~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+..+.|.+.|..|++..+..|
T Consensus 130 ~ei~k~lg~~Wk~ls~~eK~~y 151 (173)
T 2yrq_A 130 GDVAKKLGEMWNNTAADDKQPY 151 (173)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHH
Confidence 3566778889999998876655
No 68
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=34.51 E-value=28 Score=14.08 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 035755 20 ASQVKAAYKRKVWECHPD 37 (72)
Q Consensus 20 ~~~ik~~yr~l~~~~hPD 37 (72)
....++.|.++-+++.|-
T Consensus 3 fkrfrkkfkklfkklspv 20 (27)
T 2ket_A 3 FKRFRKKFKKLFKKLSPV 20 (27)
T ss_dssp HHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 456778888888888774
No 69
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=33.88 E-value=13 Score=16.74 Aligned_cols=12 Identities=17% Similarity=-0.144 Sum_probs=9.0
Q ss_pred cchhhhhCCCCC
Q 035755 4 DEARVLLGFPPN 15 (72)
Q Consensus 4 ~d~y~iLgl~~~ 15 (72)
.-||+||.++.-
T Consensus 12 naFYevLh~~nL 23 (38)
T 1zda_A 12 RRFYEALHDPNL 23 (38)
T ss_dssp HHHHHHHSCSSS
T ss_pred HHHHHHHcCCCC
Confidence 458999988644
No 70
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=32.74 E-value=31 Score=20.86 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.-+..|...+.-||+.. ..+..+.|.+.|..|++..+..|
T Consensus 20 F~~~~r~~~k~~~P~~~-------~~eisk~lge~Wk~Ls~~EK~~y 59 (214)
T 3tq6_A 20 FSKEQLPIFKAQNPDAK-------TTELIRRIAQRWRELPDSKKKIY 59 (214)
T ss_dssp HHHHHHHHHHHHCTTSC-------HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCC-------HHHHHHHHHHHHHccCHHhhhHH
Confidence 34556667777788754 24667788888988887766655
No 71
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=32.24 E-value=34 Score=19.32 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+.+|...+.-||+.. ..+..+.|.+.|..|++..+..|
T Consensus 99 f~~~~r~~~~~~~p~~~-------~~ei~k~lg~~Wk~ls~~eK~~y 138 (159)
T 2gzk_A 99 FCSEYRPKIKGEHPGLS-------IGDVAKKLGEMWNNTAADDKQPY 138 (159)
T ss_dssp HHHHHHHHHHHHCSCCC-------HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hhHhhHHHHHHhCCCCC-------HHHHHHHHHHHHHhCCHHHHHHH
Confidence 34455555666677643 23567778889999987766554
No 72
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=31.34 E-value=37 Score=19.26 Aligned_cols=15 Identities=20% Similarity=0.080 Sum_probs=11.3
Q ss_pred HHHHHHHhCCCCCCC
Q 035755 27 YKRKVWECHPDLFPV 41 (72)
Q Consensus 27 yr~l~~~~hPDk~~~ 41 (72)
..+..++.|||..-+
T Consensus 39 IyKVLKQVhpd~gIS 53 (123)
T 2nqb_D 39 IYTVLKQVHPDTGIS 53 (123)
T ss_dssp HHHHHHHHCTTCEEC
T ss_pred HHHHHHHhCCCCCcC
Confidence 378888999996433
No 73
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=31.18 E-value=19 Score=18.13 Aligned_cols=42 Identities=17% Similarity=0.025 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 23 ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+..|...+.-||+...+. .+..+.|.+.|..|++..+..|
T Consensus 18 F~~~~r~~~~~~~p~~~~~~-----~eisk~lg~~Wk~ls~~eK~~y 59 (83)
T 1aab_A 18 FVQTSREEHKKKHPDASVNF-----SEFSKKCSERWKTMSAKEKGKF 59 (83)
T ss_dssp HHHHHHHHHTTSCTTTCCCS-----SSSHHHHHHHHTTSCTTHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcH-----HHHHHHHHHHHHhCCHHHHHHH
Confidence 34455666677788864210 1345677888888887766554
No 74
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=31.08 E-value=75 Score=17.97 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhc
Q 035755 19 NASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLL 62 (72)
Q Consensus 19 ~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~ 62 (72)
|.+-|..+...-.+..|||..+..+.-...+....|.+=|.+|-
T Consensus 20 DLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L~ 63 (123)
T 4aj5_K 20 DLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLY 63 (123)
T ss_dssp HHHHHHHHHHHHHHHCC-----CCTTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCccccccChHHHHHHHHHHHHHHHHHH
Confidence 45667777777788899998433222244555666666665553
No 75
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=30.55 E-value=34 Score=21.03 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 24 KAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 24 k~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
-+..|...+.-||+.. ..+..+.|.+.|..|++..+..|
T Consensus 53 ~~e~r~~~k~~~P~~~-------~~eisk~lge~Wk~Ls~~EK~~y 91 (238)
T 3tmm_A 53 SKEQLPIFKAQNPDAK-------TTELIRRIAQRWRELPDSKKKIY 91 (238)
T ss_dssp HHHHHHHHHHHSTTSC-------HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-------HHHHHHHHHHHHHhCCHHHHHHH
Confidence 3445666666777654 24667788888999987776655
No 76
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=29.10 E-value=42 Score=19.09 Aligned_cols=15 Identities=20% Similarity=0.136 Sum_probs=11.3
Q ss_pred HHHHHHHhCCCCCCC
Q 035755 27 YKRKVWECHPDLFPV 41 (72)
Q Consensus 27 yr~l~~~~hPDk~~~ 41 (72)
..+..++.|||..-+
T Consensus 42 IyKVLKQVhpd~gIS 56 (126)
T 1tzy_B 42 VYKVLKQVHPDTGIS 56 (126)
T ss_dssp HHHHHHHHCTTCEEC
T ss_pred HHHHHHHhCCCCCcC
Confidence 478888999996433
No 77
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=28.53 E-value=53 Score=15.39 Aligned_cols=19 Identities=11% Similarity=0.352 Sum_probs=16.2
Q ss_pred hCCCCCCCCCHHHHHHHHHHH
Q 035755 10 LGFPPNSRPNASQVKAAYKRK 30 (72)
Q Consensus 10 Lgl~~~~~~~~~~ik~~yr~l 30 (72)
=||+.+. +.++|+..|.+.
T Consensus 5 ~nLp~~~--t~~~l~~~F~~~ 23 (75)
T 1iqt_A 5 GGLSPDT--PEEKIREYFGGF 23 (75)
T ss_dssp SCCCSSC--CHHHHHHHHHHH
T ss_pred eCCCCCC--CHHHHHHHHHhc
Confidence 3788888 999999999876
No 78
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=28.50 E-value=13 Score=19.47 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 26 AYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 26 ~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
.+|...+.-||+...+. .+..+.|.+.|..|++..+..|
T Consensus 36 ~~r~~~k~~~p~~~~~~-----~eisk~lg~~Wk~ls~eeK~~Y 74 (97)
T 2lhj_A 36 EKRVEIIAENPEIAKDV-----AAIGKMIGAAWNALSDEEKKPY 74 (97)
T ss_dssp GGGGGHHHHCTTSTTCS-----SHHHHHHHHTSSSSCSTTTSSS
T ss_pred HHHHHHHHHCCCCCccH-----HHHHHHHHHHHHhCCHHHHHHH
Confidence 34445556678764211 2566778888888888777655
No 79
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=27.78 E-value=13 Score=16.40 Aligned_cols=12 Identities=17% Similarity=-0.144 Sum_probs=8.7
Q ss_pred cchhhhhCCCCC
Q 035755 4 DEARVLLGFPPN 15 (72)
Q Consensus 4 ~d~y~iLgl~~~ 15 (72)
.-||+||.++.-
T Consensus 7 naFYevLh~~nL 18 (34)
T 1l6x_B 7 RRFYEALHDPNL 18 (34)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHcCCCC
Confidence 458999988643
No 80
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=27.78 E-value=29 Score=18.50 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=19.6
Q ss_pred hhhhhCCC---CCCCCCHHHHHHHHHHHHHH
Q 035755 6 ARVLLGFP---PNSRPNASQVKAAYKRKVWE 33 (72)
Q Consensus 6 ~y~iLgl~---~~~~~~~~~ik~~yr~l~~~ 33 (72)
-|.+.|+. +.. +.+++.++++++...
T Consensus 14 GFrLaGi~~v~~v~--~~ee~~~~~~~l~~~ 42 (101)
T 2ov6_A 14 GFRLAGISKVYETP--DIPATESAVRSVLED 42 (101)
T ss_dssp HHHHHTCCEEEECC--STTTHHHHHHHHHHH
T ss_pred HHHHcCCCceEecC--CHHHHHHHHHHHhhC
Confidence 46677887 444 778899999998874
No 81
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=26.18 E-value=73 Score=16.25 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhc
Q 035755 20 ASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNF 66 (72)
Q Consensus 20 ~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~ 66 (72)
...+..-||..+...-.|....+ .....+.+-+.+||.....+..
T Consensus 27 IhAmNaYYrsVvstlvqDqltKN--AvvlkRiqHLdEAY~KVk~e~s 71 (80)
T 2gsv_A 27 IHAMNSYYRSVVSTLVQDQLTKN--AVVLKRIQHLDEAYNKVKRGES 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCH--HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHhhhh
Confidence 34456667777777777877664 6777889999999998775544
No 82
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=26.06 E-value=66 Score=17.24 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=20.4
Q ss_pred hhhhhCCCCCC-CCCHHHHHHHHHHHHHH
Q 035755 6 ARVLLGFPPNS-RPNASQVKAAYKRKVWE 33 (72)
Q Consensus 6 ~y~iLgl~~~~-~~~~~~ik~~yr~l~~~ 33 (72)
-|.+.||.... .-+.+++.++++++...
T Consensus 23 GFrLaGi~~~~~~~~~ee~~~~~~~l~~~ 51 (102)
T 2i4r_A 23 GFMLAGISDIYEVTSDEEIVKAVEDVLKR 51 (102)
T ss_dssp HHHHTTCCCEEECCSHHHHHHHHHHHHHC
T ss_pred HHHHcCCCcccCCCCHHHHHHHHHHHhhC
Confidence 35677777543 23889999999998873
No 83
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=24.82 E-value=68 Score=18.09 Aligned_cols=17 Identities=0% Similarity=0.003 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHHh
Q 035755 18 PNASQVKAAYKRKVWEC 34 (72)
Q Consensus 18 ~~~~~ik~~yr~l~~~~ 34 (72)
++.+++++++++++.+.
T Consensus 17 l~d~el~~rar~LA~kI 33 (121)
T 3kp1_E 17 LSDEELQTRFWEMAEKI 33 (121)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 59999999999999875
No 84
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=24.43 E-value=59 Score=17.23 Aligned_cols=37 Identities=3% Similarity=-0.027 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755 25 AAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 25 ~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
+.+|...+.-||+ .. .+..+.+.+.|..|++..+..|
T Consensus 17 ~~~r~~~k~~~p~-~~-------~evsK~lGe~Wk~ls~~eK~py 53 (91)
T 1l8y_A 17 QSVIGDYLARFKN-DR-------VKALKAMEMTWNNMEKKEKLMW 53 (91)
T ss_dssp HHHHHHHHHHTTS-TH-------HHHHHHHHHHHHTTGGGHHHHH
T ss_pred HHHHHHHHHHcCC-CH-------HHHHHHHHHHHhcCCHHHHHHH
Confidence 3446666677887 21 3556778888888887766544
No 85
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=24.25 E-value=47 Score=17.41 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=17.0
Q ss_pred hhCCCCCCCCCHHHHHHHHHHHH
Q 035755 9 LLGFPPNSRPNASQVKAAYKRKV 31 (72)
Q Consensus 9 iLgl~~~~~~~~~~ik~~yr~l~ 31 (72)
+|-|++.+ +..+||++-.++-
T Consensus 26 ~F~V~~~A--nK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRA--SKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTC--CHHHHHHHHHHHH
T ss_pred EEEECCCC--CHHHHHHHHHHHh
Confidence 46788888 9999999987764
No 86
>1dee_G Immunoglobulin G binding protein A; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=24.13 E-value=17 Score=17.71 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=9.7
Q ss_pred cchhhhhCCCCCC
Q 035755 4 DEARVLLGFPPNS 16 (72)
Q Consensus 4 ~d~y~iLgl~~~~ 16 (72)
..||+||.++--.
T Consensus 7 ~aFYeil~lp~lt 19 (54)
T 1dee_G 7 SAFYEILNMPNLN 19 (54)
T ss_dssp HHHHHHHHCSSSC
T ss_pred HHHHHHHcCCCcc
Confidence 4689999987543
No 87
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=24.08 E-value=89 Score=16.66 Aligned_cols=20 Identities=10% Similarity=0.002 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHhCCCC
Q 035755 19 NASQVKAAYKRKVWECHPDL 38 (72)
Q Consensus 19 ~~~~ik~~yr~l~~~~hPDk 38 (72)
|.++||.+|..++++..-.+
T Consensus 68 t~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 68 SVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 99999999999888764433
No 88
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=23.96 E-value=57 Score=16.25 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhcC
Q 035755 50 KFKLISEAYTYLLS 63 (72)
Q Consensus 50 ~~~~i~~Ay~~L~d 63 (72)
+...||+||+.|.+
T Consensus 23 R~~~iN~af~~LR~ 36 (68)
T 1mdy_A 23 RLSKVNEAFETLKR 36 (68)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 56889999999864
No 89
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=23.62 E-value=85 Score=16.13 Aligned_cols=25 Identities=12% Similarity=0.010 Sum_probs=12.3
Q ss_pred hhhhhCCCCCCCCCHHHHHHHHHHH
Q 035755 6 ARVLLGFPPNSRPNASQVKAAYKRK 30 (72)
Q Consensus 6 ~y~iLgl~~~~~~~~~~ik~~yr~l 30 (72)
.|..+..+.+..++..|++...+.+
T Consensus 41 ~F~~~D~d~~G~I~~~El~~~l~~l 65 (100)
T 2lv7_A 41 AFKVFDRDGNGFISKQELGTAMRSL 65 (100)
T ss_dssp HHHHTCSSCSSCBCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHh
Confidence 3444444444445555555555443
No 90
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=23.43 E-value=62 Score=15.64 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcC
Q 035755 49 SKFKLISEAYTYLLS 63 (72)
Q Consensus 49 ~~~~~i~~Ay~~L~d 63 (72)
.+...||+||+.|.+
T Consensus 12 ~R~~~iN~af~~LR~ 26 (60)
T 2ql2_B 12 NRMHGLNAALDNLRK 26 (60)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 357889999998864
No 91
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=23.41 E-value=36 Score=17.60 Aligned_cols=23 Identities=13% Similarity=0.054 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhcChhccch
Q 035755 47 AESKFKLISEAYTYLLSGNFHLF 69 (72)
Q Consensus 47 ~~~~~~~i~~Ay~~L~d~~~R~~ 69 (72)
..+..+.|.+.|..|++..+..|
T Consensus 48 ~~eisk~lg~~Wk~ls~eeK~~y 70 (93)
T 1cg7_A 48 FGQVGKKLGEKWKALTPEEKQPY 70 (93)
T ss_dssp HHHHTTTHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHH
Confidence 34666778888888887766554
No 92
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=23.15 E-value=51 Score=17.54 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.4
Q ss_pred hCCCCCCCCCHHHHHHHHHHH
Q 035755 10 LGFPPNSRPNASQVKAAYKRK 30 (72)
Q Consensus 10 Lgl~~~~~~~~~~ik~~yr~l 30 (72)
|-|++.+ +..+||++-.++
T Consensus 32 F~V~~~A--nK~eIK~AVE~l 50 (93)
T 3r8s_T 32 LKVAKDA--TKAEIKAAVQKL 50 (93)
T ss_dssp EEECSSC--CHHHHHHHHHHH
T ss_pred EEECCCC--CHHHHHHHHHHH
Confidence 5678888 999999887765
No 93
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 b.30.5.6
Probab=23.08 E-value=1.1e+02 Score=17.13 Aligned_cols=24 Identities=8% Similarity=-0.057 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCch
Q 035755 22 QVKAAYKRKVWECHPDLFPVGRKT 45 (72)
Q Consensus 22 ~ik~~yr~l~~~~hPDk~~~~~~~ 45 (72)
++..+++.+++.-|-|-.++..++
T Consensus 2 ~L~~~~k~l~~~QhHDaItGts~~ 25 (159)
T 1o7d_C 2 DSAPLNEAMAVLQHHDAVSGTSRQ 25 (159)
T ss_dssp CSHHHHHHHHHTTBTTTTTCCSCH
T ss_pred hHHHHHHHHhCcccCCcCCccChH
Confidence 357889999999999998875443
No 94
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=22.36 E-value=1e+02 Score=18.38 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=12.0
Q ss_pred HHHHHHHHhCCCCCCC
Q 035755 26 AYKRKVWECHPDLFPV 41 (72)
Q Consensus 26 ~yr~l~~~~hPDk~~~ 41 (72)
.-++..++.|||..-+
T Consensus 8 yi~kvLkqv~p~~~iS 23 (192)
T 2jss_A 8 YIYKVLKQTHPDTGIS 23 (192)
T ss_dssp HHHHHHHHHCSSCCCC
T ss_pred HHHHHHcccCCCCCcC
Confidence 3477888999997655
No 95
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=22.13 E-value=54 Score=17.51 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=17.4
Q ss_pred hhCCCCCCCCCHHHHHHHHHHHH
Q 035755 9 LLGFPPNSRPNASQVKAAYKRKV 31 (72)
Q Consensus 9 iLgl~~~~~~~~~~ik~~yr~l~ 31 (72)
+|-|++.+ +..+||++-.++-
T Consensus 26 ~F~V~~~a--nK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKA--TKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSC--THHHHHHHHHHHH
T ss_pred EEEEcCCC--CHHHHHHHHHHHh
Confidence 56788888 9999999987764
No 96
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=21.91 E-value=67 Score=15.02 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.1
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q 035755 11 GFPPNSRPNASQVKAAYKRK 30 (72)
Q Consensus 11 gl~~~~~~~~~~ik~~yr~l 30 (72)
||+.+. +.++|+..+.+.
T Consensus 6 nlp~~~--t~~~l~~~F~~~ 23 (75)
T 2mss_A 6 GLSVNT--TVEDVKHYFEQF 23 (75)
T ss_dssp CCCSSC--CHHHHHHHHHTT
T ss_pred cCCCCC--CHHHHHHHHHhc
Confidence 788888 999999988764
No 97
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=21.84 E-value=22 Score=14.40 Aligned_cols=10 Identities=0% Similarity=-0.326 Sum_probs=5.4
Q ss_pred hcChhccchh
Q 035755 61 LLSGNFHLFT 70 (72)
Q Consensus 61 L~d~~~R~~~ 70 (72)
|+|..+|..+
T Consensus 16 isddsrrrdy 25 (26)
T 3u7d_B 16 ISDESRRRDY 25 (26)
T ss_pred ccCcchhccc
Confidence 5555555544
No 98
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=21.59 E-value=81 Score=15.12 Aligned_cols=20 Identities=5% Similarity=0.100 Sum_probs=16.9
Q ss_pred hCCCCCCCCCHHHHHHHHHHHH
Q 035755 10 LGFPPNSRPNASQVKAAYKRKV 31 (72)
Q Consensus 10 Lgl~~~~~~~~~~ik~~yr~l~ 31 (72)
=||+.+. +.++|+..|.+..
T Consensus 12 ~nLp~~~--t~~~l~~~F~~~~ 31 (87)
T 2hzc_A 12 GNIPFGI--TEEAMMDFFNAQM 31 (87)
T ss_dssp ESCCTTC--CHHHHHHHHHHHH
T ss_pred eCCCCCC--CHHHHHHHHHHHh
Confidence 3788888 9999999998874
No 99
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.58 E-value=57 Score=17.13 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=16.6
Q ss_pred hhCCCCCCCCCHHHHHHHHHHHH
Q 035755 9 LLGFPPNSRPNASQVKAAYKRKV 31 (72)
Q Consensus 9 iLgl~~~~~~~~~~ik~~yr~l~ 31 (72)
+|-|++.+ +..+||++-.++-
T Consensus 27 ~F~Vd~~A--nK~qIK~AVe~lf 47 (86)
T 3j21_T 27 TFIVDRRA--TKQDIKRAVEEIF 47 (86)
T ss_dssp EEEECTTC--CHHHHHHHHHHHT
T ss_pred EEEEcCCC--CHHHHHHHHHHHc
Confidence 35678888 9999999887763
No 100
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=21.21 E-value=77 Score=15.32 Aligned_cols=31 Identities=13% Similarity=0.038 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHh
Q 035755 24 KAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61 (72)
Q Consensus 24 k~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L 61 (72)
.+..|...+.-||+... .+..+.|.+.|..|
T Consensus 15 ~~~~r~~~~~~~p~~~~-------~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 15 LNDTRESIKRENPGIKV-------TEIAKKGGEMWKEL 45 (73)
T ss_dssp HHHHHHHHHHHSTTCCH-------HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHhh
Confidence 44556667777887432 35667788888877
No 101
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=20.94 E-value=1.2e+02 Score=16.89 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHHH--HhCCCCCCCCCchHHHHHHHHHHHHHHHhcChh
Q 035755 14 PNSRPNASQVKAAYKRKVW--ECHPDLFPVGRKTDAESKFKLISEAYTYLLSGN 65 (72)
Q Consensus 14 ~~~~~~~~~ik~~yr~l~~--~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~ 65 (72)
++. +..+||..|+.+.+ ...|+...+. +..++....|.+|...+++..
T Consensus 52 ~~R--T~v~lKdRWrnllk~~~~~p~~krg~--~~p~e~~~rv~~~h~~~gn~~ 101 (121)
T 2juh_A 52 DHR--TYVDLKDKWKTLVHTASIAPQQRRGE--PVPQDLLDRVLAAHAYWSQQQ 101 (121)
T ss_dssp SSC--CSHHHHHHHHHHHHHHHTCSTTCCCS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCC--CHHHHHHHHHHHHhhhccCCcccCCC--CCCHHHHHHHHHHHHHHccch
Confidence 566 89999999999987 3446654332 122333445667777666543
No 102
>3k6g_D Telomeric repeat-binding factor 2; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=20.87 E-value=68 Score=14.62 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhcChh
Q 035755 51 FKLISEAYTYLLSGN 65 (72)
Q Consensus 51 ~~~i~~Ay~~L~d~~ 65 (72)
...+.+|++.||+..
T Consensus 11 i~tLk~AFK~Ls~sq 25 (42)
T 3k6g_D 11 MMTLKAAFKTLSGAQ 25 (42)
T ss_dssp HHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHhccCC
Confidence 345677888887654
No 103
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=20.63 E-value=61 Score=17.21 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=16.1
Q ss_pred hhCCCCCCCCCHHHHHHHHHHH
Q 035755 9 LLGFPPNSRPNASQVKAAYKRK 30 (72)
Q Consensus 9 iLgl~~~~~~~~~~ik~~yr~l 30 (72)
+|-|++.+ +..+||++-.++
T Consensus 25 ~F~V~~~A--nK~qIK~aVe~l 44 (92)
T 3tve_T 25 TFWVHPKA--TKTEIKNAVETA 44 (92)
T ss_dssp EEEECTTC--CHHHHHHHHHHH
T ss_pred EEEECCCC--CHHHHHHHHHHH
Confidence 35678888 999999988765
Done!