Query 035756
Match_columns 186
No_of_seqs 235 out of 1320
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:07:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.9 1.4E-21 3E-26 134.0 7.4 61 15-75 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.8 2.5E-20 5.5E-25 129.2 8.0 62 16-77 1-62 (64)
3 PHA00280 putative NHN endonucl 99.5 1.7E-13 3.7E-18 106.8 6.9 58 9-69 61-119 (121)
4 PF00847 AP2: AP2 domain; Int 99.1 1.2E-10 2.6E-15 77.9 5.3 51 15-65 1-55 (56)
5 PF14657 Integrase_AP2: AP2-li 76.4 11 0.00023 24.0 5.3 38 27-64 1-42 (46)
6 cd00801 INT_P4 Bacteriophage P 72.9 7 0.00015 33.2 4.9 43 21-63 5-49 (357)
7 PHA02601 int integrase; Provis 61.2 14 0.0003 31.8 4.4 44 19-63 2-46 (333)
8 PF13356 DUF4102: Domain of un 60.2 15 0.00033 26.2 3.9 38 26-63 35-74 (89)
9 PRK09692 integrase; Provisiona 55.4 31 0.00067 30.9 5.8 37 20-56 33-75 (413)
10 PF08846 DUF1816: Domain of un 42.6 52 0.0011 23.3 4.1 38 27-64 9-46 (68)
11 PF14112 DUF4284: Domain of un 40.8 20 0.00043 27.7 1.9 19 39-57 2-20 (122)
12 PF05036 SPOR: Sporulation rel 39.8 30 0.00065 22.8 2.5 24 37-60 42-65 (76)
13 PF07494 Reg_prop: Two compone 31.3 69 0.0015 17.5 2.7 11 37-47 14-24 (24)
14 PF10729 CedA: Cell division a 27.4 1.4E+02 0.0031 21.5 4.3 41 11-54 27-67 (80)
15 PF08471 Ribonuc_red_2_N: Clas 24.7 79 0.0017 23.8 2.7 21 43-63 70-90 (93)
16 TIGR01164 rplP_bact ribosomal 22.2 1.8E+02 0.004 22.6 4.5 34 27-63 91-124 (126)
17 PRK09203 rplP 50S ribosomal pr 21.5 1.7E+02 0.0038 23.1 4.3 36 27-65 92-127 (138)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.85 E-value=1.4e-21 Score=133.99 Aligned_cols=61 Identities=66% Similarity=1.161 Sum_probs=57.9
Q ss_pred CceeeeEECCCCcEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhhccCcccCCCCCC
Q 035756 15 SSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPEL 75 (186)
Q Consensus 15 s~yrGVr~r~~GkW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~g~~a~lNFp~~ 75 (186)
|+||||+++++|||+|+|+++..++++|||+|+|+|||+.|||.++++++|..+.+|||++
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 6899999888899999999966699999999999999999999999999999999999985
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.83 E-value=2.5e-20 Score=129.23 Aligned_cols=62 Identities=65% Similarity=1.202 Sum_probs=58.7
Q ss_pred ceeeeEECCCCcEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhhccCcccCCCCCCCC
Q 035756 16 SYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPELVT 77 (186)
Q Consensus 16 ~yrGVr~r~~GkW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~g~~a~lNFp~~~~ 77 (186)
+|+||+++++|||+|+|++|.+++++|||+|+|+||||.|||.++++++|..+.+|||.+..
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y 62 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY 62 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence 59999988899999999999999999999999999999999999999999999999998643
No 3
>PHA00280 putative NHN endonuclease
Probab=99.45 E-value=1.7e-13 Score=106.81 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=52.1
Q ss_pred CCCCCCCceeeeEEC-CCCcEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhhccCccc
Q 035756 9 FHGGTSSSYRGVRKR-KWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRGREAR 69 (186)
Q Consensus 9 ~~~~~~s~yrGVr~r-~~GkW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~g~~a~ 69 (186)
.+++|+|+|+||++. ..|||+|+|++ ++|+++||.|+++|+|+.||+ ++.+|+|.+++
T Consensus 61 ~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 61 TPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred CCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 457889999999865 47999999999 999999999999999999997 77889998764
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.12 E-value=1.2e-10 Score=77.87 Aligned_cols=51 Identities=33% Similarity=0.468 Sum_probs=45.0
Q ss_pred CceeeeEECC-CCcEEEEEecCCC---CcEEEecCCCCHHHHHHHHHHHHHhhcc
Q 035756 15 SSYRGVRKRK-WGKWVSEIREPGT---KSRIWLGSFETAEMAAAAYDVAALHFRG 65 (186)
Q Consensus 15 s~yrGVr~r~-~GkW~A~I~~p~~---~kri~LGtf~t~EeAA~AyD~Aa~~l~g 65 (186)
|+|+||++.+ .++|+|+|+++.. +++++||.|.+++||++|++.+.+.++|
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~ 55 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEG 55 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcC
Confidence 6899998654 7999999999422 4999999999999999999999999986
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=76.39 E-value=11 Score=24.03 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=29.5
Q ss_pred cEEEEEe--cC--CCCcEEEecCCCCHHHHHHHHHHHHHhhc
Q 035756 27 KWVSEIR--EP--GTKSRIWLGSFETAEMAAAAYDVAALHFR 64 (186)
Q Consensus 27 kW~A~I~--~p--~~~kri~LGtf~t~EeAA~AyD~Aa~~l~ 64 (186)
+|..+|. .+ +++++++-+-|.|..||-.+.......+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 5888883 43 34488999999999999999988776653
No 6
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=72.87 E-value=7 Score=33.19 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=30.4
Q ss_pred EECCCCcEEEEEecCCCCcEEEecCCC--CHHHHHHHHHHHHHhh
Q 035756 21 RKRKWGKWVSEIREPGTKSRIWLGSFE--TAEMAAAAYDVAALHF 63 (186)
Q Consensus 21 r~r~~GkW~A~I~~p~~~kri~LGtf~--t~EeAA~AyD~Aa~~l 63 (186)
+....+.|..+++..++.+++.||+|+ +.++|..........+
T Consensus 5 ~~~g~~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~ 49 (357)
T cd00801 5 SPSGSKSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALL 49 (357)
T ss_pred cCCCCEEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 333346799999997777889999996 6667766655544443
No 7
>PHA02601 int integrase; Provisional
Probab=61.17 E-value=14 Score=31.80 Aligned_cols=44 Identities=34% Similarity=0.357 Sum_probs=29.0
Q ss_pred eeEECCCCcEEEEEecC-CCCcEEEecCCCCHHHHHHHHHHHHHhh
Q 035756 19 GVRKRKWGKWVSEIREP-GTKSRIWLGSFETAEMAAAAYDVAALHF 63 (186)
Q Consensus 19 GVr~r~~GkW~A~I~~p-~~~kri~LGtf~t~EeAA~AyD~Aa~~l 63 (186)
+|++.++|+|.++|+.. ..++++. .+|.|..||-...+......
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAEV 46 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHhc
Confidence 56677789999999863 2245544 36999888866555544333
No 8
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=60.23 E-value=15 Score=26.16 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=26.5
Q ss_pred CcEEEEEecCCCCcEEEecCCCC--HHHHHHHHHHHHHhh
Q 035756 26 GKWVSEIREPGTKSRIWLGSFET--AEMAAAAYDVAALHF 63 (186)
Q Consensus 26 GkW~A~I~~p~~~kri~LGtf~t--~EeAA~AyD~Aa~~l 63 (186)
..|+-+.+..++.+++-||.|++ ..+|..........+
T Consensus 35 kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~~~~ 74 (89)
T PF13356_consen 35 KTFYFRYRINGKRRRITLGRYPELSLAEAREKARELRALV 74 (89)
T ss_dssp EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHHHHH
T ss_pred eEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHHHHHH
Confidence 46999998866678899999976 555555554444333
No 9
>PRK09692 integrase; Provisional
Probab=55.40 E-value=31 Score=30.92 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=23.2
Q ss_pred eEECCCC--cEEEEEecCC--CCcEEEecCCC--CHHHHHHHH
Q 035756 20 VRKRKWG--KWVSEIREPG--TKSRIWLGSFE--TAEMAAAAY 56 (186)
Q Consensus 20 Vr~r~~G--kW~A~I~~p~--~~kri~LGtf~--t~EeAA~Ay 56 (186)
|+-+++| .|+.+.+.+. +.+++-||.|+ |..+|..+.
T Consensus 33 l~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a 75 (413)
T PRK09692 33 LLIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYR 75 (413)
T ss_pred EEEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHH
Confidence 3444444 5998887553 33457899999 566655433
No 10
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=42.59 E-value=52 Score=23.33 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=29.0
Q ss_pred cEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhhc
Q 035756 27 KWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFR 64 (186)
Q Consensus 27 kW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~ 64 (186)
.|=++|.--.-.-..|.|-|.|.+||..+.---..-|.
T Consensus 9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL~ 46 (68)
T PF08846_consen 9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDLE 46 (68)
T ss_pred cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHHH
Confidence 46678887556688999999999999988755444443
No 11
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=40.75 E-value=20 Score=27.67 Aligned_cols=19 Identities=21% Similarity=0.739 Sum_probs=13.9
Q ss_pred cEEEecCCCCHHHHHHHHH
Q 035756 39 SRIWLGSFETAEMAAAAYD 57 (186)
Q Consensus 39 kri~LGtf~t~EeAA~AyD 57 (186)
..||||+|.|.++=-.=.+
T Consensus 2 VsiWiG~f~s~~el~~Y~e 20 (122)
T PF14112_consen 2 VSIWIGNFKSEDELEEYFE 20 (122)
T ss_pred eEEEEecCCCHHHHHHHhC
Confidence 4699999998877554443
No 12
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=39.78 E-value=30 Score=22.79 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=17.7
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHH
Q 035756 37 TKSRIWLGSFETAEMAAAAYDVAA 60 (186)
Q Consensus 37 ~~kri~LGtf~t~EeAA~AyD~Aa 60 (186)
..-++.+|.|+|.++|..+-....
T Consensus 42 ~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 42 PWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp TCEEEEECCECTCCHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHh
Confidence 446788888888888877776554
No 13
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=31.32 E-value=69 Score=17.54 Aligned_cols=11 Identities=18% Similarity=1.108 Sum_probs=8.5
Q ss_pred CCcEEEecCCC
Q 035756 37 TKSRIWLGSFE 47 (186)
Q Consensus 37 ~~kri~LGtf~ 47 (186)
+..+||+||+.
T Consensus 14 ~~G~lWigT~~ 24 (24)
T PF07494_consen 14 SDGNLWIGTYN 24 (24)
T ss_dssp TTSCEEEEETS
T ss_pred CCcCEEEEeCC
Confidence 55689999973
No 14
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=27.37 E-value=1.4e+02 Score=21.52 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=24.1
Q ss_pred CCCCCceeeeEECCCCcEEEEEecCCCCcEEEecCCCCHHHHHH
Q 035756 11 GGTSSSYRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAA 54 (186)
Q Consensus 11 ~~~~s~yrGVr~r~~GkW~A~I~~p~~~kri~LGtf~t~EeAA~ 54 (186)
.-.--+||-|..- .|||+|.+.. +..-.---.|..+|.|-+
T Consensus 27 a~k~dgfrdvw~l-rgkyvafvl~--ge~f~rsp~fs~pesaqr 67 (80)
T PF10729_consen 27 ALKMDGFRDVWQL-RGKYVAFVLM--GEHFRRSPAFSVPESAQR 67 (80)
T ss_dssp -B-TTTECCECCC-CCEEEEEEES--SS-EEE---BSSHHHHHH
T ss_pred hhhcccccceeee-ccceEEEEEe--cchhccCCCcCCcHHHHH
Confidence 3344678888533 3999999988 544444456777776654
No 15
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=24.73 E-value=79 Score=23.82 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=17.8
Q ss_pred ecCCCCHHHHHHHHHHHHHhh
Q 035756 43 LGSFETAEMAAAAYDVAALHF 63 (186)
Q Consensus 43 LGtf~t~EeAA~AyD~Aa~~l 63 (186)
-|.|.|+|+|..-||.....|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 489999999999999876554
No 16
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=22.22 E-value=1.8e+02 Score=22.58 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.3
Q ss_pred cEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhh
Q 035756 27 KWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHF 63 (186)
Q Consensus 27 kW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l 63 (186)
.|+|+|.. +..-+-++. .+.+.|..|...|+.+|
T Consensus 91 ~~varV~~--G~ilfEi~~-~~~~~a~~al~~a~~KL 124 (126)
T TIGR01164 91 YWVAVVKP--GKILFEIAG-VPEEVAREAFRLAASKL 124 (126)
T ss_pred EEEEEECC--CCEEEEEeC-CCHHHHHHHHHHHHhcC
Confidence 49999998 777777777 89999999998887765
No 17
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=21.48 E-value=1.7e+02 Score=23.07 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=29.8
Q ss_pred cEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhhcc
Q 035756 27 KWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRG 65 (186)
Q Consensus 27 kW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~g 65 (186)
.|+|+|.. +..-+-++. .+.+.|..|+..|+.+|-+
T Consensus 92 ~~varVk~--G~iifEi~~-~~~~~a~~al~~a~~KLP~ 127 (138)
T PRK09203 92 YWVAVVKP--GRILFEIAG-VSEELAREALRLAAAKLPI 127 (138)
T ss_pred EEEEEECC--CCEEEEEeC-CCHHHHHHHHHHHhccCCC
Confidence 39999998 777777777 8899999999998877744
Done!