Query 035756
Match_columns 186
No_of_seqs 235 out of 1320
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:59:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 7.4E-26 2.5E-30 156.7 6.2 61 16-76 2-63 (63)
2 3igm_B PF14_0633 protein; AP2 88.1 0.34 1.2E-05 34.2 2.8 24 12-35 3-27 (77)
3 1u3e_M HNH homing endonuclease 81.4 0.3 1E-05 38.3 0.0 39 17-58 109-147 (174)
4 1z1b_A Integrase; protein-DNA 78.9 2.6 8.9E-05 34.6 5.0 40 18-61 14-53 (356)
5 3jtz_A Integrase; four strande 76.0 2.9 9.8E-05 29.5 3.9 44 20-63 28-75 (88)
6 3ju0_A Phage integrase; four s 53.6 12 0.0004 27.3 3.5 44 20-63 28-75 (108)
7 1x60_A Sporulation-specific N- 38.0 26 0.00088 23.0 3.0 33 29-61 36-68 (79)
8 2ftc_I Mitochondrial ribosomal 37.5 50 0.0017 24.4 4.8 37 27-65 79-115 (118)
9 1uta_A FTSN, MSGA, cell divisi 33.9 43 0.0015 22.2 3.6 33 29-61 36-68 (81)
10 1b69_A Protein (integrase); in 32.5 52 0.0018 22.4 3.8 22 14-35 9-30 (69)
11 1kcq_A Gelsolin, brevin, ADF, 28.6 78 0.0027 22.1 4.4 37 26-62 27-63 (104)
12 1svq_A Severin; actin-binding; 25.0 70 0.0024 22.9 3.7 35 28-62 39-73 (114)
13 3r8s_M 50S ribosomal protein L 23.8 1E+02 0.0036 23.3 4.5 35 28-65 92-126 (136)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=7.4e-26 Score=156.70 Aligned_cols=61 Identities=61% Similarity=1.053 Sum_probs=57.6
Q ss_pred ceeeeEECCCCcEEEEEecCCC-CcEEEecCCCCHHHHHHHHHHHHHhhccCcccCCCCCCC
Q 035756 16 SYRGVRKRKWGKWVSEIREPGT-KSRIWLGSFETAEMAAAAYDVAALHFRGREARLNFPELV 76 (186)
Q Consensus 16 ~yrGVr~r~~GkW~A~I~~p~~-~kri~LGtf~t~EeAA~AyD~Aa~~l~g~~a~lNFp~~~ 76 (186)
+||||+++++|||+|+|++|.+ ++++|||+|+|+||||+|||.|+++++|..+++|||+++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 6999998889999999999985 699999999999999999999999999999999999863
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=88.07 E-value=0.34 Score=34.18 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=19.7
Q ss_pred CCCCceeeeEECC-CCcEEEEEecC
Q 035756 12 GTSSSYRGVRKRK-WGKWVSEIREP 35 (186)
Q Consensus 12 ~~~s~yrGVr~r~-~GkW~A~I~~p 35 (186)
..+|+|.||++.+ .+.|+|.-.+.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCCcEEeecCCceEEEEEecC
Confidence 4679999998765 79999999984
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=81.44 E-value=0.3 Score=38.25 Aligned_cols=39 Identities=8% Similarity=-0.034 Sum_probs=29.3
Q ss_pred eeeeEECCCCcEEEEEecCCCCcEEEecCCCCHHHHHHHHHH
Q 035756 17 YRGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDV 58 (186)
Q Consensus 17 yrGVr~r~~GkW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~ 58 (186)
++||...+.++|.+.|.. . +.++||.|.|.+|||++|.+
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv 147 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL 147 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence 456644224678889988 5 56789999999999999743
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=78.94 E-value=2.6 Score=34.63 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=28.8
Q ss_pred eeeEECCCCcEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHH
Q 035756 18 RGVRKRKWGKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAAL 61 (186)
Q Consensus 18 rGVr~r~~GkW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~ 61 (186)
.||++++.|.|..+... +++++.+|. |..||......+..
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~ 53 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANI 53 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHH
Confidence 35777777899877655 778899996 88887766554433
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=76.05 E-value=2.9 Score=29.50 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=31.9
Q ss_pred eEECCC--CcEEEEEecCCCCcEEEecCCC--CHHHHHHHHHHHHHhh
Q 035756 20 VRKRKW--GKWVSEIREPGTKSRIWLGSFE--TAEMAAAAYDVAALHF 63 (186)
Q Consensus 20 Vr~r~~--GkW~A~I~~p~~~kri~LGtf~--t~EeAA~AyD~Aa~~l 63 (186)
++-.++ ..|+-+.+..++.+++-||.|+ |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 344444 4699999886667889999998 4788877777666554
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=53.64 E-value=12 Score=27.33 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=31.1
Q ss_pred eEECCC--CcEEEEEecCCCCcEEEecCCCC--HHHHHHHHHHHHHhh
Q 035756 20 VRKRKW--GKWVSEIREPGTKSRIWLGSFET--AEMAAAAYDVAALHF 63 (186)
Q Consensus 20 Vr~r~~--GkW~A~I~~p~~~kri~LGtf~t--~EeAA~AyD~Aa~~l 63 (186)
++-.++ ..|+-+.+..++.+++-||.|+. ..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 344444 45999988866678899999974 777777666655554
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=37.98 E-value=26 Score=23.05 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=22.5
Q ss_pred EEEEecCCCCcEEEecCCCCHHHHHHHHHHHHH
Q 035756 29 VSEIREPGTKSRIWLGSFETAEMAAAAYDVAAL 61 (186)
Q Consensus 29 ~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~ 61 (186)
.+.|...+.--|+++|.|.+.++|..+-+....
T Consensus 36 ~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 36 DSIVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp CEEEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CeEEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 344433223368999999999999888776544
No 8
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=37.54 E-value=50 Score=24.44 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=31.0
Q ss_pred cEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhhcc
Q 035756 27 KWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRG 65 (186)
Q Consensus 27 kW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~g 65 (186)
.|+|.|.. +..-+-++...+.+.|..|...|+.+|-.
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 39999998 77777787778899999999999888743
No 9
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=33.91 E-value=43 Score=22.22 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=23.3
Q ss_pred EEEEecCCCCcEEEecCCCCHHHHHHHHHHHHH
Q 035756 29 VSEIREPGTKSRIWLGSFETAEMAAAAYDVAAL 61 (186)
Q Consensus 29 ~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~ 61 (186)
.+.|...+.--|+.+|.|.+.++|..+-+....
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 445554334468999999999999888776544
No 10
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=32.46 E-value=52 Score=22.41 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=18.8
Q ss_pred CCceeeeEECCCCcEEEEEecC
Q 035756 14 SSSYRGVRKRKWGKWVSEIREP 35 (186)
Q Consensus 14 ~s~yrGVr~r~~GkW~A~I~~p 35 (186)
..-+.|+++|+.|+|+.++...
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~ 30 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDS 30 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECT
T ss_pred CccCCCeEEccCCcEEEEEEcC
Confidence 4567899999999999999885
No 11
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=28.56 E-value=78 Score=22.08 Aligned_cols=37 Identities=19% Similarity=0.074 Sum_probs=30.3
Q ss_pred CcEEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHh
Q 035756 26 GKWVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALH 62 (186)
Q Consensus 26 GkW~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~~ 62 (186)
+.--+.|-..++...+|.|...+..|-..|-..|...
T Consensus 27 ns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 27 NNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp CTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4456788887777899999999999999998887543
No 12
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=25.01 E-value=70 Score=22.86 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=28.5
Q ss_pred EEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHh
Q 035756 28 WVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALH 62 (186)
Q Consensus 28 W~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~~ 62 (186)
=-+.|-..++...+|.|...+..|-++|-..|...
T Consensus 39 ~D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i 73 (114)
T 1svq_A 39 GDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI 73 (114)
T ss_dssp TSEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 35677776777899999999999999998877653
No 13
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=23.76 E-value=1e+02 Score=23.31 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=29.8
Q ss_pred EEEEEecCCCCcEEEecCCCCHHHHHHHHHHHHHhhcc
Q 035756 28 WVSEIREPGTKSRIWLGSFETAEMAAAAYDVAALHFRG 65 (186)
Q Consensus 28 W~A~I~~p~~~kri~LGtf~t~EeAA~AyD~Aa~~l~g 65 (186)
|+|.|.. +..-+-++. -+.+.|..|...|+.+|-+
T Consensus 92 wva~Vk~--G~ilfEi~g-~~~~~A~eAlr~a~~KLP~ 126 (136)
T 3r8s_M 92 WVALIQP--GKVLYEMDG-VPEELAREAFKLAAAKLPI 126 (136)
T ss_dssp EEEEECT--TCEEEEEES-SCHHHHHHHHHHHHTTCSS
T ss_pred EEEEECC--CCEEEEEeC-CCHHHHHHHHHHHHhcCCC
Confidence 9999998 887777877 4899999999999888754
Done!