Query 035757
Match_columns 68
No_of_seqs 116 out of 145
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:00:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w45_A Nuclease, alkaline exon 14.7 82 0.0028 24.5 2.1 22 14-35 343-364 (470)
2 3fhd_A ORF 37; enase like PD-( 12.4 1.1E+02 0.0038 24.3 2.2 24 12-35 382-405 (508)
3 2fvh_A Urease gamma subunit; p 11.8 45 0.0015 22.0 -0.2 18 41-58 12-31 (120)
4 1y74_B MLIN-2/CASK, peripheral 11.0 1.3E+02 0.0044 15.8 1.6 13 22-34 29-41 (50)
5 2fma_A Amyloid beta A4 protein 8.7 1.3E+02 0.0045 17.4 1.1 16 44-60 36-51 (59)
6 3msq_A Putative ubiquinone bio 8.7 1.5E+02 0.0052 20.2 1.6 14 25-38 118-131 (224)
7 3ip4_C Aspartyl/glutamyl-tRNA( 8.4 89 0.003 18.8 0.3 13 45-57 85-97 (100)
8 2l7s_A Adrenomedullin, ADM, AM 8.0 1.5E+02 0.0051 16.9 1.1 14 31-44 26-42 (53)
9 3di5_A DINB-like protein; stru 7.9 47 0.0016 20.1 -1.2 32 27-58 122-159 (168)
10 1gpp_A Endonuclease PI-SCEI; h 7.6 1E+02 0.0036 22.2 0.4 18 41-58 196-213 (237)
No 1
>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A
Probab=14.72 E-value=82 Score=24.51 Aligned_cols=22 Identities=9% Similarity=0.020 Sum_probs=17.9
Q ss_pred cccCCccCCCHHHHHHHHHHHh
Q 035757 14 RFPVGPIAHVPYLRKVAAAHQL 35 (68)
Q Consensus 14 R~~~~~~~~~~Y~rrl~~AH~~ 35 (68)
+.|++-||+++|++++..-+++
T Consensus 343 ~~piF~NPRH~yf~QillQ~yV 364 (470)
T 2w45_A 343 PVNIFINPRHNYFYQVLLQYKI 364 (470)
T ss_dssp EEECEECTTSHHHHHHHHHHHH
T ss_pred ecccccCCCCccHHHHHHHHHH
Confidence 5588889999999998766654
No 2
>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human herpesvirus 8 type M} PDB: 3pov_A*
Probab=12.44 E-value=1.1e+02 Score=24.25 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=18.4
Q ss_pred eccccCCccCCCHHHHHHHHHHHh
Q 035757 12 HRRFPVGPIAHVPYLRKVAAAHQL 35 (68)
Q Consensus 12 H~R~~~~~~~~~~Y~rrl~~AH~~ 35 (68)
.-+.|++-||+++|++++..-+.+
T Consensus 382 ~f~~piF~NPRH~yf~QillQ~yV 405 (508)
T 3fhd_A 382 RFKANLFVNVRHSYFYQVLLQSSI 405 (508)
T ss_dssp EEEECCEECTTSHHHHHHHHHHHH
T ss_pred EEecccccCCCCccHHHHHHHHHH
Confidence 345688899999999998765543
No 3
>2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics, PSI, protein STR initiative, TB structural genomics consortium; 1.80A {Mycobacterium tuberculosis}
Probab=11.81 E-value=45 Score=21.98 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=9.0
Q ss_pred CCCeeee--Eeeccchhhhh
Q 035757 41 FNGLPYG--LFLGPQELEEV 58 (68)
Q Consensus 41 ~~g~~fG--fl~~p~~l~~v 58 (68)
.|-+||| |-+.|.|.||.
T Consensus 12 ~~~~~~~~~M~LtPrE~dkL 31 (120)
T 2fvh_A 12 SGLVPAGSHMRLTPHEQERL 31 (120)
T ss_dssp ----------CCCHHHHHHH
T ss_pred cccCcCCCcCCcCchhHHHH
Confidence 3567766 68999999986
No 4
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=10.95 E-value=1.3e+02 Score=15.76 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHH
Q 035757 22 HVPYLRKVAAAHQ 34 (68)
Q Consensus 22 ~~~Y~rrl~~AH~ 34 (68)
+.|.|+.|..||.
T Consensus 29 ~~PHfqaLl~ahD 41 (50)
T 1y74_B 29 TQPHFMALLQTHD 41 (50)
T ss_dssp HSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 5689999999996
No 5
>2fma_A Amyloid beta A4 protein precursor; alpha-beta two-layered sandwich, metal binding protein; 0.85A {Homo sapiens} PDB: 2fjz_A 2fk2_A 2fk3_A 2fk1_A
Probab=8.72 E-value=1.3e+02 Score=17.36 Aligned_cols=16 Identities=31% Similarity=0.808 Sum_probs=10.0
Q ss_pred eeeeEeeccchhhhhcc
Q 035757 44 LPYGLFLGPQELEEVEG 60 (68)
Q Consensus 44 ~~fGfl~~p~~l~~v~~ 60 (68)
-|||||+ |=+++.--|
T Consensus 36 ~s~amLl-PCg~d~F~G 51 (59)
T 2fma_A 36 HDYGMLL-PCGIDKFRG 51 (59)
T ss_dssp EEEEEEE-EETTTEEEE
T ss_pred Eeeeeee-ccCCCceee
Confidence 3899876 445665533
No 6
>3msq_A Putative ubiquinone biosynthesis protein; COQ4 superfamily, structural genomics, joint center for STRU genomics, JCSG; 2.85A {Nostoc punctiforme}
Probab=8.70 E-value=1.5e+02 Score=20.24 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhcC
Q 035757 25 YLRKVAAAHQLHHS 38 (68)
Q Consensus 25 Y~rrl~~AH~~HH~ 38 (68)
+++|.++.|.++|.
T Consensus 118 v~~R~re~HD~~Hv 131 (224)
T 3msq_A 118 LKMLWRSTHDIYHV 131 (224)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhhhh
Confidence 56999999999994
No 7
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=8.36 E-value=89 Score=18.79 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=8.1
Q ss_pred eeeEeeccchhhh
Q 035757 45 PYGLFLGPQELEE 57 (68)
Q Consensus 45 ~fGfl~~p~~l~~ 57 (68)
--|||.||+-+++
T Consensus 85 e~g~f~VPkVie~ 97 (100)
T 3ip4_C 85 EDGQFKVPTIMNE 97 (100)
T ss_dssp ETTEEEEECC---
T ss_pred cCCeEEeccccCC
Confidence 4589999987754
No 8
>2l7s_A Adrenomedullin, ADM, AM; hormone, PRE-Pro-adrenomedullin; NMR {Homo sapiens}
Probab=7.98 E-value=1.5e+02 Score=16.86 Aligned_cols=14 Identities=36% Similarity=0.230 Sum_probs=9.6
Q ss_pred HHHHhhcC---CCCCCe
Q 035757 31 AAHQLHHS---EKFNGL 44 (68)
Q Consensus 31 ~AH~~HH~---~K~~g~ 44 (68)
.||++++. +|++..
T Consensus 26 LahrL~ql~~~~Kd~~A 42 (53)
T 2l7s_A 26 LAHQIYQFTDKDKDNVA 42 (53)
T ss_dssp HHHHHTTSSCCCCSSCC
T ss_pred HHHHHHHHhCcCccccC
Confidence 48999995 466554
No 9
>3di5_A DINB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.01A {Bacillus cereus atcc 10987}
Probab=7.90 E-value=47 Score=20.13 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=13.4
Q ss_pred HHHHHHHHhhcCC------CCCCeeeeEeeccchhhhh
Q 035757 27 RKVAAAHQLHHSE------KFNGLPYGLFLGPQELEEV 58 (68)
Q Consensus 27 rrl~~AH~~HH~~------K~~g~~fGfl~~p~~l~~v 58 (68)
-.....|..||.+ +.-|.+---+|+|++=|-.
T Consensus 122 l~~~~~H~~hHrGQi~~~lr~~G~~~P~~yGps~~~~~ 159 (168)
T 3di5_A 122 LMTLINHQNHHRGQMTVLMRQAGLTVPGVYGPAKEEWA 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCC--------
T ss_pred HHHHHhHHHHhHHHHHHHHHHcCCCCCcccCCCHHHHH
Confidence 3455689999942 3333333346788765544
No 10
>1gpp_A Endonuclease PI-SCEI; homing, protein splicing; 1.35A {Saccharomyces cerevisiae} SCOP: b.86.1.2
Probab=7.55 E-value=1e+02 Score=22.24 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.1
Q ss_pred CCCeeeeEeeccchhhhh
Q 035757 41 FNGLPYGLFLGPQELEEV 58 (68)
Q Consensus 41 ~~g~~fGfl~~p~~l~~v 58 (68)
+..+|=||++.|++|++-
T Consensus 196 ~~~~~~~~~~~~~~~~~~ 213 (237)
T 1gpp_A 196 FARECRGFYFELQELKED 213 (237)
T ss_dssp GCBCCEEECEEEEEEEEE
T ss_pred hhhhhhheeechhhhccc
Confidence 457899999999999874
Done!