Query 035757
Match_columns 68
No_of_seqs 116 out of 145
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 10:00:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035757.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035757hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gysa3 b.1.2.1 (A:218-316) Co 14.0 35 0.0025 20.3 1.4 13 42-54 29-41 (99)
2 d2qswa1 d.58.18.13 (A:256-345) 9.1 71 0.0052 17.2 1.6 35 18-52 22-62 (90)
3 d3c2wa3 d.110.3.9 (A:5-117) Ba 8.9 44 0.0032 18.7 0.6 10 45-54 21-30 (113)
4 d2oola2 d.110.3.9 (A:26-139) S 8.5 38 0.0028 18.3 0.2 10 45-54 16-25 (114)
5 d1unqa_ b.55.1.1 (A:) Rac-alph 8.1 26 0.0019 18.1 -0.7 21 5-25 7-27 (118)
6 d1gsma2 b.1.1.4 (A:91-206) Muc 7.1 1E+02 0.0075 18.5 1.7 20 42-61 33-52 (116)
7 d2fkla1 d.230.3.1 (A:126-189) 7.1 81 0.0059 17.1 1.1 17 44-61 41-57 (64)
8 d1qf8a_ g.41.4.1 (A:) Casein k 6.6 24 0.0017 22.3 -1.6 9 9-17 75-83 (173)
9 d1tp6a_ d.17.4.12 (A:) Hypothe 6.1 1.3E+02 0.0098 17.4 1.9 14 24-37 2-15 (126)
10 d1q3oa_ b.36.1.1 (A:) Shank1, 5.9 90 0.0066 16.6 0.9 12 40-51 13-24 (104)
No 1
>d2gysa3 b.1.2.1 (A:218-316) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.99 E-value=35 Score=20.32 Aligned_cols=13 Identities=31% Similarity=0.830 Sum_probs=10.1
Q ss_pred CCeeeeEeeccch
Q 035757 42 NGLPYGLFLGPQE 54 (68)
Q Consensus 42 ~g~~fGfl~~p~~ 54 (68)
+.+|||+|+-|.-
T Consensus 29 ~SVsFgLfYk~~P 41 (99)
T d2gysa3 29 SSVSFGLFYKPSP 41 (99)
T ss_dssp TTCCEEEEEECC-
T ss_pred eeEEEEEEeccCc
Confidence 6899999997643
No 2
>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]}
Probab=9.11 E-value=71 Score=17.18 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=26.8
Q ss_pred CccCCCHHHHHHHHHHHhhcC------CCCCCeeeeEeecc
Q 035757 18 GPIAHVPYLRKVAAAHQLHHS------EKFNGLPYGLFLGP 52 (68)
Q Consensus 18 ~~~~~~~Y~rrl~~AH~~HH~------~K~~g~~fGfl~~p 52 (68)
+..++.|.+-++.+.+.+==+ +.-++.+||.|++-
T Consensus 22 g~~a~~Pvis~l~r~~~i~vnIL~g~i~~i~~~~~G~L~l~ 62 (90)
T d2qswa1 22 GEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQ 62 (90)
T ss_dssp SCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCccCccHHHHHHHHhCCcEEEEEEEeEEeCCccEEEEEEE
Confidence 456788999999998875432 35689999999874
No 3
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.95 E-value=44 Score=18.68 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=8.0
Q ss_pred eeeEeeccch
Q 035757 45 PYGLFLGPQE 54 (68)
Q Consensus 45 ~fGfl~~p~~ 54 (68)
|||+|++-..
T Consensus 21 phG~LLald~ 30 (113)
T d3c2wa3 21 PHGALVTLRA 30 (113)
T ss_dssp TTEEEEEECT
T ss_pred CCeEEEEEcC
Confidence 8999998653
No 4
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=8.55 E-value=38 Score=18.26 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=7.9
Q ss_pred eeeEeeccch
Q 035757 45 PYGLFLGPQE 54 (68)
Q Consensus 45 ~fGfl~~p~~ 54 (68)
|||||++-..
T Consensus 16 phG~Llvld~ 25 (114)
T d2oola2 16 PHGYLFVVSE 25 (114)
T ss_dssp TTSEEEEECT
T ss_pred CCcEEEEEEC
Confidence 8899988653
No 5
>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.12 E-value=26 Score=18.14 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=9.8
Q ss_pred EEeceeeeccccCCccCCCHH
Q 035757 5 FVHDGLVHRRFPVGPIAHVPY 25 (68)
Q Consensus 5 ~vHD~liH~R~~~~~~~~~~Y 25 (68)
++++|..++|-.....++.+|
T Consensus 7 v~k~G~L~K~~~~~k~Wk~Rw 27 (118)
T d1unqa_ 7 IVKEGWLHKRGEYIKTWRPRY 27 (118)
T ss_dssp EEEEEEEEEECSSSCCEEEEE
T ss_pred EEEEEEEEEECCCCCCcEEEE
Confidence 455666665543333333333
No 6
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.09 E-value=1e+02 Score=18.54 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=16.4
Q ss_pred CCeeeeEeeccchhhhhccc
Q 035757 42 NGLPYGLFLGPQELEEVEGT 61 (68)
Q Consensus 42 ~g~~fGfl~~p~~l~~v~~~ 61 (68)
+.-||-+|++-.+|+.+-.+
T Consensus 33 ~~lsfsll~Gd~~Leg~qal 52 (116)
T d1gsma2 33 NALSFSLLVGGQELEGAQAL 52 (116)
T ss_dssp TTEEEEEEETTEECTTCEEC
T ss_pred CceeeeeeeCcceecchhhc
Confidence 57899999999999877443
No 7
>d2fkla1 d.230.3.1 (A:126-189) Amyloid beta a4 protein copper binding domain (domain 2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.08 E-value=81 Score=17.13 Aligned_cols=17 Identities=29% Similarity=0.761 Sum_probs=10.1
Q ss_pred eeeeEeeccchhhhhccc
Q 035757 44 LPYGLFLGPQELEEVEGT 61 (68)
Q Consensus 44 ~~fGfl~~p~~l~~v~~~ 61 (68)
-|||||+ |=++++--|.
T Consensus 41 ~sy~mLl-PCg~d~F~Gv 57 (64)
T d2fkla1 41 HDYGMLL-PCGIDKFRGV 57 (64)
T ss_dssp EEEEEEE-ECSTTEEEEE
T ss_pred Eeeeeee-ccccCceece
Confidence 4899987 3344554333
No 8
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.62 E-value=24 Score=22.34 Aligned_cols=9 Identities=44% Similarity=1.040 Sum_probs=6.7
Q ss_pred eeeeccccC
Q 035757 9 GLVHRRFPV 17 (68)
Q Consensus 9 ~liH~R~~~ 17 (68)
|+||+|+-.
T Consensus 75 GLIHaRyI~ 83 (173)
T d1qf8a_ 75 GLIHARYIL 83 (173)
T ss_dssp HHHHHHHTT
T ss_pred HHhhhheee
Confidence 678888854
No 9
>d1tp6a_ d.17.4.12 (A:) Hypothetical protein PA1314 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.13 E-value=1.3e+02 Score=17.39 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhc
Q 035757 24 PYLRKVAAAHQLHH 37 (68)
Q Consensus 24 ~Y~rrl~~AH~~HH 37 (68)
||++.|..+|..=-
T Consensus 2 p~~~EV~~~H~~ie 15 (126)
T d1tp6a_ 2 AYRREIHHAHVAIR 15 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 78888888887644
No 10
>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.91 E-value=90 Score=16.55 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=9.4
Q ss_pred CCCCeeeeEeec
Q 035757 40 KFNGLPYGLFLG 51 (68)
Q Consensus 40 K~~g~~fGfl~~ 51 (68)
|.++.+|||-+.
T Consensus 13 r~~~~~fGf~l~ 24 (104)
T d1q3oa_ 13 KKDSEGFGFVLR 24 (104)
T ss_dssp CCTTSCCSEEEE
T ss_pred ECCCCccCEEEE
Confidence 556789999885
Done!