BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035762
         (268 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LYC|A Chain A, Structure Of C-Terminal Domain Of Ska1
          Length = 130

 Score = 35.0 bits (79), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 150 ITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWE-----RA 204
           IT +E  ++  Y  GRLTLE +N  V+ M  +    + ++    K+L  +  E     R 
Sbjct: 10  ITDEEFKTIPKYQLGRLTLEMMNEIVSKMDDFLMKKSKILGKTNKQLTRSDREVLDNWRE 69

Query: 205 LELRDIATVEAVKGKHFFLENDVK 228
           LE++     + +    FF+E D++
Sbjct: 70  LEMK---ARKRLPTTLFFIETDIR 90


>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
           Kinase Kinase 7 Activated Mutant (S287d, T291d)
          Length = 318

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 193 KKKLAGNLWERALELRDIATVEAV---KGKHFFLENDVKGPSLKLDNTGKAILTVLRHLG 249
           KK++ G + ER L    +A V+A+   K KH  +  DVK  ++ LD  G+  L      G
Sbjct: 114 KKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISG 173

Query: 250 RISETR 255
           R+ + +
Sbjct: 174 RLVDDK 179


>pdb|2RKB|A Chain A, Serine Dehydratase Like-1 From Human Cancer Cells
 pdb|2RKB|B Chain B, Serine Dehydratase Like-1 From Human Cancer Cells
 pdb|2RKB|C Chain C, Serine Dehydratase Like-1 From Human Cancer Cells
 pdb|2RKB|D Chain D, Serine Dehydratase Like-1 From Human Cancer Cells
 pdb|2RKB|E Chain E, Serine Dehydratase Like-1 From Human Cancer Cells
          Length = 318

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 37  STVADLSAIDAAVKAVE-LQVQAIKSRVREETEAIPKAKKLID 78
           S    L A   A +A+E +QV  I S V E+TEA+   ++L+D
Sbjct: 214 SVAKSLGAKTVAARALECMQVCKIHSEVVEDTEAVSAVQQLLD 256


>pdb|1H79|A Chain A, Structural Basis For Allosteric Substrate Specificity
           Regulation In Class Iii Ribonucleotide Reductases: Nrdd
           In Complex With Dttp
 pdb|1H7A|A Chain A, Structural Basis For Allosteric Substrate Specificity
           Regulation In Class Iii Ribonucleotide Reductases: Nrdd
           In Complex With Datp
 pdb|1H7B|A Chain A, Structural Basis For Allosteric Substrate Specificity
           Regulation In Class Iii Ribonucleotide Reductases,
           Native Nrdd
 pdb|1H78|A Chain A, Structural Basis For Allosteric Substrate Specificity
           Regulation In Class Iii Ribonucleotide Reductases: Nrdd
           In Complex With Dctp.
 pdb|1HK8|A Chain A, Structural Basis For Allosteric Substrate Specificity
           Regulation In Class Iii Ribonucleotide Reductases: Nrdd
           In Complex With Dgtp
          Length = 605

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 112 TLLPESSKQQSNSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKV 171
           T+ P   ++ +  V  KP++   +   K GR S  L YI   EL+ L     GR  L K+
Sbjct: 365 TVAPILYQEGAFGVRLKPDDDI-IELFKNGRSSVSLGYIGIHELNILVGRDIGREILTKM 423

Query: 172 NAAVNDMATYAEANAHLISAPKKKLA 197
           NA +            L S P + L 
Sbjct: 424 NAHLKQWTERTGFAFSLYSTPAENLC 449


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.127    0.338 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,640,735
Number of Sequences: 62578
Number of extensions: 233902
Number of successful extensions: 509
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 20
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)