BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035762
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LZZ7|SKA1_ARATH Spindle and kinetochore-associated protein 1 homolog OS=Arabidopsis
thaliana GN=At3g60660 PE=2 SV=1
Length = 272
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/273 (71%), Positives = 228/273 (83%), Gaps = 6/273 (2%)
Query: 1 MDVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIK 60
M+ +AGSSLDSLI+SFN RI +LQELVIARNMYP ST+ DLSAID A+ ++ELQVQ+IK
Sbjct: 1 MEGNQAGSSLDSLIASFNKRIGELQELVIARNMYPASTIPDLSAIDTALSSMELQVQSIK 60
Query: 61 SRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQ 120
R+REETEAIPKAKKLI+ASL+QQ LQ MS YA S +ML+ + + LL E++KQ
Sbjct: 61 DRLREETEAIPKAKKLIEASLKQQGKLQKMSIYAPSHFPDKATMLNSDLNRCLLQENAKQ 120
Query: 121 QS-----NSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAV 175
+S+ F EE A LPKEKKGRGSPPLWYIT +EL+SLSSYMRGRLTLEKVNAA+
Sbjct: 121 YEQHSTLSSLKFD-EEAAVLPKEKKGRGSPPLWYITVEELNSLSSYMRGRLTLEKVNAAI 179
Query: 176 NDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLD 235
NDMA+YAEANAHLI+A K+KLA NLWE+AL+LRDI T +AVKGKHFFLE D+KGPSLKLD
Sbjct: 180 NDMASYAEANAHLIAASKQKLAENLWEKALKLRDIVTEQAVKGKHFFLETDMKGPSLKLD 239
Query: 236 NTGKAILTVLRHLGRISETRIGHHRVIILLKPQ 268
NTGKAILTVLRHLGRISETRIG +RVIIL+KP
Sbjct: 240 NTGKAILTVLRHLGRISETRIGQNRVIILMKPH 272
>sp|Q7XAM0|SKA1_ORYSJ Spindle and kinetochore-associated protein 1 homolog OS=Oryza
sativa subsp. japonica GN=Os07g0484500 PE=2 SV=1
Length = 276
Score = 308 bits (789), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 151/275 (54%), Positives = 203/275 (73%), Gaps = 11/275 (4%)
Query: 2 DVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKS 61
D + G SLD++ ++F +R+ +LQELV+ARNMYP + + DL+A+D ++ A+E Q+QA++
Sbjct: 5 DASRLGESLDAVSAAFQSRVMELQELVLARNMYPATAIPDLAAVDVSLTAMEAQLQAVRR 64
Query: 62 RVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDL-NTTKTLLPES--- 117
R++EE EA PKAKKL+ SL+QQ+ LQ M + + + + + L + + + PES
Sbjct: 65 RLQEEREAFPKAKKLVQQSLKQQRRLQLMLANMPTGMREDVFATPLEHNSSMMFPESLNF 124
Query: 118 ----SKQQSNSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNA 173
+ + + + K EEP A PK KGRG P WYI+++ELDSLSSYMRGRLTLEKVN
Sbjct: 125 SSAVPEVRDHDLKIK-EEPTAPPK--KGRGPAPRWYISTEELDSLSSYMRGRLTLEKVNI 181
Query: 174 AVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLK 233
A+N++A+YA+ NAHL++ PKKKL+ + WE+ALELRDIA E+VKG+HFFLE D+KGP LK
Sbjct: 182 AINEVASYADGNAHLVACPKKKLSEDTWEKALELRDIAARESVKGRHFFLETDIKGPGLK 241
Query: 234 LDNTGKAILTVLRHLGRISETRIGHHRVIILLKPQ 268
LD TGKAILTVLRHLGR ETRIGHHRV IL K Q
Sbjct: 242 LDTTGKAILTVLRHLGRFQETRIGHHRVFILSKQQ 276
>sp|B8B624|SKA1_ORYSI Spindle and kinetochore-associated protein 1 homolog OS=Oryza
sativa subsp. indica GN=OsI_26011 PE=3 SV=1
Length = 276
Score = 306 bits (784), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 151/275 (54%), Positives = 202/275 (73%), Gaps = 11/275 (4%)
Query: 2 DVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKS 61
D + G SLD++ ++F +R+ +LQELV+ARNMYP + + DL+A+D ++ A+E Q+QA++
Sbjct: 5 DASRLGESLDAVSAAFQSRVMELQELVLARNMYPATAIPDLAAVDVSLTAMEAQLQAVRR 64
Query: 62 RVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDL-NTTKTLLPES--- 117
R++EE EA PKAKKL+ SL+QQ+ LQ M + + + + + L + + + PES
Sbjct: 65 RLQEEREAFPKAKKLVQQSLKQQRRLQLMLANMPTGMREDVFATPLEHNSSMMFPESLNF 124
Query: 118 ----SKQQSNSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNA 173
+ + + + K EEP A PK KGRG P WYI+++ELDSLSSYMRGRLTLEKVN
Sbjct: 125 SSAVPEVRDHDLKIK-EEPTAPPK--KGRGPAPRWYISTEELDSLSSYMRGRLTLEKVNI 181
Query: 174 AVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLK 233
A+N++A+YA+ NAHL++ PKKKL+ + WE+AL LRDIA E+VKGKHFFLE D+KGP LK
Sbjct: 182 AINEVASYADGNAHLVACPKKKLSEDTWEKALVLRDIAARESVKGKHFFLETDIKGPGLK 241
Query: 234 LDNTGKAILTVLRHLGRISETRIGHHRVIILLKPQ 268
LD TGKAILTVLRHLGR ETRIGHHRV IL K Q
Sbjct: 242 LDTTGKAILTVLRHLGRFQETRIGHHRVFILSKQQ 276
>sp|B4FGS2|SKA1_MAIZE Spindle and kinetochore-associated protein 1 homolog OS=Zea mays
PE=2 SV=1
Length = 273
Score = 288 bits (736), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 144/269 (53%), Positives = 197/269 (73%), Gaps = 6/269 (2%)
Query: 2 DVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKS 61
D +A LD++ ++F +++ +LQ+LV+AR+M+P + + DL+ +DA V A+E QV+ I
Sbjct: 5 DGSRATPPLDAVAAAFKSQVMELQDLVLARSMFPATALPDLANVDALVTAMESQVETISR 64
Query: 62 RVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQT-MSMLDLNTTKTLLPE--SS 118
R++EE +AIPKAKKL+ SL++++ LQ+M + S + + + ++ +LP SS
Sbjct: 65 RLQEELDAIPKAKKLVQRSLKEEEKLQHMLANLPSGMRKNDFANQHEQSSSRMLPHFNSS 124
Query: 119 KQQSNSVSFK-PEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVND 177
++N K +EP A P+ KGR P WYI+++ELDSLSSYMRGRLTLEKVN A+N+
Sbjct: 125 FTEANECELKIKDEPVAAPR--KGRAPAPRWYISTEELDSLSSYMRGRLTLEKVNIAINE 182
Query: 178 MATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDNT 237
+A+YA+ANAHL++ PKKKL+ + WE+ALELRDIA AVKG HFFLE D+KGP LKLDNT
Sbjct: 183 VASYADANAHLVTCPKKKLSEDTWEKALELRDIAASGAVKGNHFFLEADIKGPGLKLDNT 242
Query: 238 GKAILTVLRHLGRISETRIGHHRVIILLK 266
GKAILTVLRHLGR E RIGHHRV IL K
Sbjct: 243 GKAILTVLRHLGRFHEVRIGHHRVFILSK 271
>sp|B0BN28|SKA1_RAT Spindle and kinetochore-associated protein 1 OS=Rattus norvegicus
GN=Ska1 PE=2 SV=1
Length = 254
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 132/267 (49%), Gaps = 38/267 (14%)
Query: 7 GSSLDSLISSFNTRIADLQELVIARNM-------YPVSTVAD-LSAIDAAVKAVELQVQA 58
S L+ L S N +I ++++++ R + +S + D + ++ + EL++Q
Sbjct: 2 ASDLEQLCSYVNEKIENIKKILSLRKLGQDPTLKTTLSKIGDEIITVNELLNQFELEIQY 61
Query: 59 IKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESS 118
+E+T + K+L + + K ++++ + S L Q + + + T P+
Sbjct: 62 -----QEQTNS--SLKELCKSLEEEFKDVEHLKEHIPSHLPQ----VTVTQSSTHKPDLD 110
Query: 119 KQQSNSVSFKPEEPAALPKE--KKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVN 176
++S K EEP LPK+ K+ R + +IT+DE + +YM+ RLT ++N +
Sbjct: 111 PKES----VKAEEPV-LPKKPPKEQRVIKEMHFITTDEFSGVPAYMKSRLTYCQINDVIK 165
Query: 177 DMATYAEANAHLISAPKKKLAG---NLWERAL--ELRDIATVEAVKGKHFFLENDVKG-P 230
++ + +I PK ++ NL++R + E +D KG+HF +E D+K
Sbjct: 166 EINKAVVSKYKIIHQPKASMSSVKRNLYQRFINEETKD------TKGRHFIVEADIKEFT 219
Query: 231 SLKLDNTGKAILTVLRHLGRISETRIG 257
+LK+D I+ +LRH R+SE R G
Sbjct: 220 TLKVDKKFHVIMNILRHCQRLSEVRGG 246
>sp|Q9CPV1|SKA1_MOUSE Spindle and kinetochore-associated protein 1 OS=Mus musculus
GN=Ska1 PE=2 SV=2
Length = 254
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 135/268 (50%), Gaps = 42/268 (15%)
Query: 8 SSLDSLISSFNTRIADLQELVIARNM-------YPVSTVAD-LSAIDAAVKAVELQVQAI 59
S L+ L S N +I ++++++ RN+ +S + D + A++ + EL++Q
Sbjct: 3 SELEDLCSYVNEKIGNIKKILSIRNLGQDPALKTTLSKIGDEIIAVNELLNKFELEIQ-- 60
Query: 60 KSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLL--PES 117
+E+T + K+L ++ + + ++++ + L Q + T++L+ PE
Sbjct: 61 ---YQEQTNS--SLKELCESLREECEDVEHLKEHVPPHLPQ------VTATQSLVHKPEP 109
Query: 118 SKQQSNSVSFKPEEPAALPKE--KKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAV 175
++S+ K EEP LPK+ ++ R + +IT DE + +YM+ RLT ++N +
Sbjct: 110 DPKESD----KAEEPG-LPKKPPREQRVIKEMQFITMDEFSDVPAYMKSRLTYCQINDII 164
Query: 176 NDMATYAEANAHLISAPKKKLAG---NLWERAL--ELRDIATVEAVKGKHFFLENDVKG- 229
++ + ++ PK ++ NL++R + E +D KG HF +E D+K
Sbjct: 165 KEINKAVVSKYKIMHQPKASMSSVKRNLYQRFINEETKD------TKGHHFIVEADIKEF 218
Query: 230 PSLKLDNTGKAILTVLRHLGRISETRIG 257
+LK+D I+ +LRH R+SE R G
Sbjct: 219 TALKVDKRFYVIMHILRHCHRLSEVRGG 246
>sp|Q96BD8|SKA1_HUMAN Spindle and kinetochore-associated protein 1 OS=Homo sapiens
GN=SKA1 PE=1 SV=1
Length = 255
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 36/267 (13%)
Query: 6 AGSSLDSLISSFNTRIADLQELVIARNMYPVSTVA--------DLSAIDAAVKAVELQVQ 57
A S L+ L S N +I ++++ + RN T+ ++ I+ + +EL++Q
Sbjct: 2 ASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEIQ 61
Query: 58 AIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPES 117
+E+T K+L ++ K ++++ S L Q L PE
Sbjct: 62 Y-----QEQTNN--SLKELCESLEEDYKDIEHLKENVPSHLPQVTVTQSCVKGSDLDPEE 114
Query: 118 SKQQSNSVSFKPEEPAAL---PKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAA 174
K EEP + PKE++ P +IT DE + + SYM+ RLT ++N
Sbjct: 115 P--------IKVEEPEPVKKPPKEQRSIKEMP--FITCDEFNGVPSYMKSRLTYNQINDV 164
Query: 175 VNDMATYAEANAHLISAPKKKLAG---NLWERALELRDIATVEAVKGKHFFLENDVKG-P 230
+ ++ + ++ PKK + NL+ R ++ + KG++F +E D+K
Sbjct: 165 IKEINKAVISKYKILHQPKKSMNSVTRNLYHRFID----EETKDTKGRYFIVEADIKEFT 220
Query: 231 SLKLDNTGKAILTVLRHLGRISETRIG 257
+LK D +L +LRH R+SE R G
Sbjct: 221 TLKADKKFHVLLNILRHCRRLSEVRGG 247
>sp|Q0V7M7|SKA1_BOVIN Spindle and kinetochore-associated protein 1 OS=Bos taurus GN=SKA1
PE=2 SV=2
Length = 254
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 120/264 (45%), Gaps = 36/264 (13%)
Query: 7 GSSLDSLISSFNTRIADLQELVIARNMYPVSTVA--------DLSAIDAAVKAVELQVQA 58
S L+ L + N +I +++ + RN T+ ++ ++ + +EL++Q
Sbjct: 2 ASDLEQLCAHINEKIGNIKRTLSLRNCGQEPTLKTILNKIGDEIIVVNELLNKLELEIQ- 60
Query: 59 IKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESS 118
+E+T + K+L ++ K ++++ L Q + L PE
Sbjct: 61 ----YQEQTNS--SLKELFESLEEDYKDVEHLKENIPPHLPQVTVTQNFVNGSDLDPEEP 114
Query: 119 KQQSNSVSFKPEEPAAL---PKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAV 175
K EEPA PKE++ P +ITSDE + + +YM+ RLT +N +
Sbjct: 115 --------VKVEEPAPTKKPPKEQRSIKEMP--FITSDEFNGIPAYMKSRLTYCHINDVI 164
Query: 176 NDMATYAEANAHLISAPKKKL---AGNLWERALELRDIATVEAVKGKHFFLENDVKG-PS 231
++ + ++ PKK + A NL+ R + D T E KG +F +E D+K +
Sbjct: 165 KEINKAVVSKYKILHQPKKSMSSVARNLYHRFI---DEETKET-KGHYFVVEADIKEFTT 220
Query: 232 LKLDNTGKAILTVLRHLGRISETR 255
LK+D IL +LRH R+SE R
Sbjct: 221 LKVDKRFHGILNILRHCRRLSEVR 244
>sp|Q6DHG8|SKA1_DANRE Spindle and kinetochore-associated protein 1 OS=Danio rerio GN=ska1
PE=2 SV=1
Length = 258
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 147 LWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALE 206
+ +IT E DS+ YM+GR+T +++NAAV + T + ++ P K L N R+L+
Sbjct: 140 MEFITVPEFDSIPPYMKGRVTYDQLNAAVQSINTAVTSKYKILHQPVKTL--NNVSRSLQ 197
Query: 207 LR--DIATVEAVKGKHFFLENDVKG-PSLKLDNTGKAILTVLRHLGRISETRIGHHRVII 263
R D T + KG F +E D+K LK+D +L +LRH R+ E R G I
Sbjct: 198 QRFKDQETKDT-KGHFFVVEQDIKEFAQLKVDKRFVGMLNMLRHCQRLKEVRGGGLTRFI 256
Query: 264 LL 265
LL
Sbjct: 257 LL 258
>sp|B0BM28|SKA1_XENTR Spindle and kinetochore-associated protein 1 OS=Xenopus tropicalis
GN=ska1 PE=2 SV=1
Length = 252
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 118/256 (46%), Gaps = 29/256 (11%)
Query: 10 LDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVRE-ETE 68
LD L S N++I+ +++ + RN + ++++ + + ++ ++ + + ETE
Sbjct: 6 LDELCSHVNSKISLIKKTLQLRN------IGQDPSLNSVLSKIAFEMHSLYNLLNNLETE 59
Query: 69 AIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQSNSVSFK 128
+ ++ I SLR+ + +S L + + LP+ ++ S++
Sbjct: 60 V--QRQETIANSLRELQATVERDFTEASHLKENIP--------PHLPKRTQSSSSAPDEA 109
Query: 129 PE--------EPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMAT 180
PE EPA P ++K + IT E ++ +YM+ RLT E++N + ++
Sbjct: 110 PEMVVKVAAPEPAKKPSKEKPIKE--MELITVHEFGTVPAYMKNRLTYEQINNIIEELNK 167
Query: 181 YAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKG-PSLKLDNTGK 239
++ P K L+ ++ ++ T + KG+ F ++ D+K +K+D
Sbjct: 168 AVVGKYKILHQPLKSLSNQARKQLSRYKEEETKDT-KGQFFIVDQDIKDFTQVKVDKRFH 226
Query: 240 AILTVLRHLGRISETR 255
+L++LRH R+ E R
Sbjct: 227 GMLSILRHCHRLREIR 242
>sp|A8WS92|SKA1_CAEBR Spindle and kinetochore-associated protein 1 homolog
OS=Caenorhabditis briggsae GN=CBG02218 PE=3 SV=1
Length = 239
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 25/184 (13%)
Query: 88 QNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQSNSVSFKPEEPAALPKEKKGRGSPPL 147
Q+ SS + + L++ + + + +P+S Q+S E+ + + G+ +
Sbjct: 60 QSCSSCSPNVLNKFLGIEEKLVNNVEIPDSVPQKSTRPCLDDEKEGSSVVQPPESGNRHV 119
Query: 148 WYITSDELDSLSSYMRGRLTLEKVNAAVNDMATY-AEANAHL------ISAPKKKLAGNL 200
I+ E S+ Y GRLTL+ +N V M + + NA L I+ +++ N
Sbjct: 120 QLISEQEFKSIPKYQLGRLTLDNLNEIVGKMDEFLTKKNAILGKTNKQITRQDREVLDN- 178
Query: 201 WERALELRDIATVEAVKGK----HFFLENDVK---GPSLKLDNTGKAILTVLRHLGRISE 253
W R LE++ KG+ FF+END++ L+L + KAI LRH+ R+ E
Sbjct: 179 W-RELEIK-------AKGRLPTTLFFIENDIRPLLTERLRL-SFAKAI-PCLRHIRRVRE 228
Query: 254 TRIG 257
R G
Sbjct: 229 ERCG 232
>sp|Q9XWS0|SKA1_CAEEL Spindle and kinetochore-associated protein 1 homolog
OS=Caenorhabditis elegans GN=Y106G6H.15 PE=1 SV=1
Length = 243
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 22/169 (13%)
Query: 76 LIDASLRQQKILQNMS-SYASSSLSQTMSMLDL--------NTTKTLLPESSKQQSNSVS 126
L DA+ QQK+ N + + + SQ L + + L+P+S + + +
Sbjct: 44 LDDAAFDQQKLENNCEETCMNCTKSQLNDFLGIKVEASTIVDVKSQLVPQSKESSALVET 103
Query: 127 FKPEEP--AALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEA 184
+P E ++ PKE R P IT +E ++ Y GRLTLE +N V+ M +
Sbjct: 104 NEPNEQGLSSKPKENDIRIVP---QITDEEFKTIPKYQLGRLTLEMMNEIVSKMDDFLMK 160
Query: 185 NAHLISAPKKKLAGNLWE-----RALELRDIATVEAVKGKHFFLENDVK 228
+ ++ K+L + E R LE++ + + FF+E D++
Sbjct: 161 KSKILGKTNKQLTRSDREVLDNWRELEMK---ARKRLPTTLFFIETDIR 206
>sp|Q7MGR8|RPOB_VIBVY DNA-directed RNA polymerase subunit beta OS=Vibrio vulnificus
(strain YJ016) GN=rpoB PE=3 SV=1
Length = 1342
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 150 ITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRD 209
+ +DE+D LS+ G+ + + NA +N+ T+A+ LI+A +K +G ++ D
Sbjct: 598 VVTDEVDYLSAIEEGQFVIAQANAKLNEDGTFAD---ELITARQKGESGLHPREHVDYMD 654
Query: 210 IATVEAV 216
+AT + V
Sbjct: 655 VATNQVV 661
>sp|Q8DD20|RPOB_VIBVU DNA-directed RNA polymerase subunit beta OS=Vibrio vulnificus
(strain CMCP6) GN=rpoB PE=3 SV=1
Length = 1342
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 150 ITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRD 209
+ +DE+D LS+ G+ + + NA +N+ T+A+ LI+A +K +G ++ D
Sbjct: 598 VVTDEVDYLSAIEEGQFVIAQANAKLNEDGTFAD---ELITARQKGESGLHPREHVDYMD 654
Query: 210 IATVEAV 216
+AT + V
Sbjct: 655 VATNQVV 661
>sp|O13710|SMC5_SCHPO Structural maintenance of chromosomes protein 5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smc5 PE=1 SV=3
Length = 1076
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 6 AGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVRE 65
A SS+ SL+ +FN ++ +L + P VA+ + +D + +E + R +
Sbjct: 128 ATSSITSLMDTFNVQLNNLCHFL------PQDRVAEFAQLDPYSRLMETE------RAID 175
Query: 66 ETEAIPKAKKLIDASLRQQKILQN 89
+P +KLID R+++ILQN
Sbjct: 176 HEGLLPAHEKLIDLRKREREILQN 199
>sp|Q87KQ4|RPOB_VIBPA DNA-directed RNA polymerase subunit beta OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=rpoB PE=3 SV=1
Length = 1342
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 150 ITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRD 209
+ +DE+D LS+ G+ + + NA +N+ T+A+ LI+A +K +G + D
Sbjct: 598 VVTDEVDYLSAIEEGQFVIAQANAKLNEDGTFAD---ELITARQKGESGLHPREHAQYMD 654
Query: 210 IATVEAV 216
+AT + V
Sbjct: 655 VATNQVV 661
>sp|Q0RRN7|GLMM_FRAAA Phosphoglucosamine mutase OS=Frankia alni (strain ACN14a) GN=glmM
PE=3 SV=2
Length = 455
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 212 TVEAVKGKHFFLENDVKGPSLKLDN--TGKAILTVLRHLGRISET 254
VEA++ + L + G + LD+ TG +LT LR LGR++ET
Sbjct: 317 VVEAMRAGGYVLGGEQSGHVVFLDHATTGDGLLTALRLLGRVAET 361
>sp|O05217|YWRC_BACSU Uncharacterized HTH-type transcriptional regulator YwrC OS=Bacillus
subtilis (strain 168) GN=ywrC PE=4 SV=1
Length = 158
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 223 LENDVKGPSLKLDNTGKAILTVLRHLGRISETRIG 257
+ ++ + P+L LD T K ILT+L GRIS T +G
Sbjct: 1 MSHEYQIPNLVLDETDKQILTILHEEGRISYTDLG 35
>sp|A7MXF1|RPOB_VIBHB DNA-directed RNA polymerase subunit beta OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=rpoB PE=3 SV=1
Length = 1342
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 150 ITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRD 209
+ +DE+D LS+ G+ + + NAA+ + +A+ LI+A +K +G + D
Sbjct: 598 VVTDEVDYLSAIEEGQFVIAQANAALTEEGGFAD---ELITARQKGESGLHPREHAQYMD 654
Query: 210 IATVEAV 216
+AT + V
Sbjct: 655 VATNQVV 661
>sp|Q7TPD6|RAVR2_MOUSE Ribonucleoprotein PTB-binding 2 OS=Mus musculus GN=Raver2 PE=1 SV=1
Length = 673
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Query: 141 GRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEA---------NAHLISA 191
G+G PP I S+ LD++S + LEK A + YA+A +++LISA
Sbjct: 583 GKGMPPKTGIASNILDAISQGSESQHALEKCIAYSPSIEDYAQASSLRNEKRGSSYLISA 642
Query: 192 PKK---KLAG 198
P+ +LAG
Sbjct: 643 PEGGPVELAG 652
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,813,737
Number of Sequences: 539616
Number of extensions: 3134486
Number of successful extensions: 9472
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 9416
Number of HSP's gapped (non-prelim): 98
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)