Query 035762
Match_columns 268
No_of_seqs 80 out of 82
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:10:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07160 DUF1395: Protein of u 100.0 6E-71 1.3E-75 500.3 7.5 238 20-260 1-243 (243)
2 KOG4832 Uncharacterized conser 100.0 1.8E-61 4E-66 433.1 20.3 250 5-264 1-253 (253)
3 PF11362 DUF3161: Protein of u 91.3 0.14 3E-06 41.2 2.0 40 149-188 7-46 (90)
4 PF03670 UPF0184: Uncharacteri 79.7 11 0.00023 30.0 7.1 55 39-96 25-79 (83)
5 PF07160 DUF1395: Protein of u 74.9 7.9 0.00017 35.8 6.0 54 39-95 28-81 (243)
6 PF10212 TTKRSYEDQ: Predicted 74.4 13 0.00029 38.2 7.9 85 10-94 410-496 (518)
7 PF13094 CENP-Q: CENP-Q, a CEN 69.0 71 0.0015 27.1 10.7 39 151-189 120-159 (160)
8 PF07544 Med9: RNA polymerase 67.1 12 0.00026 29.1 4.6 61 5-76 21-81 (83)
9 PF04100 Vps53_N: Vps53-like, 67.0 45 0.00098 32.7 9.6 81 7-94 20-104 (383)
10 PF07798 DUF1640: Protein of u 62.6 75 0.0016 27.6 9.2 60 7-72 46-105 (177)
11 PF09756 DDRGK: DDRGK domain; 61.2 2.7 5.8E-05 37.8 -0.1 29 149-177 155-185 (188)
12 cd04779 HTH_MerR-like_sg4 Heli 59.0 63 0.0014 27.2 7.9 45 44-97 78-122 (134)
13 PRK02119 hypothetical protein; 55.9 48 0.001 25.3 6.1 24 40-63 2-25 (73)
14 KOG2180 Late Golgi protein sor 55.3 78 0.0017 34.2 9.3 83 7-96 35-121 (793)
15 PF04156 IncA: IncA protein; 49.6 1.4E+02 0.0031 25.5 8.8 52 39-90 129-180 (191)
16 PF04102 SlyX: SlyX; InterPro 47.4 66 0.0014 24.0 5.6 43 45-94 2-44 (69)
17 PRK04325 hypothetical protein; 45.3 81 0.0018 24.1 5.8 21 42-62 4-24 (74)
18 PF15011 CK2S: Casein Kinase 2 42.8 2.3E+02 0.005 24.8 10.0 79 9-94 23-104 (168)
19 PRK02793 phi X174 lysis protei 42.7 91 0.002 23.7 5.7 20 44-63 5-24 (72)
20 KOG0994 Extracellular matrix g 41.3 83 0.0018 36.1 7.2 55 7-65 1196-1250(1758)
21 KOG0979 Structural maintenance 40.7 67 0.0015 35.8 6.4 81 7-87 126-221 (1072)
22 PF05130 FlgN: FlgN protein; 38.9 1.9E+02 0.0041 22.6 8.6 51 9-59 2-53 (143)
23 PRK09039 hypothetical protein; 38.7 1.6E+02 0.0036 28.4 8.2 59 40-98 144-203 (343)
24 PF03979 Sigma70_r1_1: Sigma-7 38.6 18 0.00039 27.7 1.3 15 162-176 18-32 (82)
25 PF04350 PilO: Pilus assembly 38.3 60 0.0013 26.2 4.5 48 50-97 2-49 (144)
26 KOG3054 Uncharacterized conser 37.8 21 0.00046 33.9 1.9 26 148-173 255-282 (299)
27 PRK00295 hypothetical protein; 37.8 1.1E+02 0.0025 22.9 5.5 18 45-62 3-20 (68)
28 PRK04406 hypothetical protein; 37.7 1.3E+02 0.0028 23.1 5.9 19 44-62 8-26 (75)
29 PRK00846 hypothetical protein; 37.6 1.2E+02 0.0025 23.8 5.7 21 44-64 10-30 (77)
30 PF10256 Erf4: Golgin subfamil 37.4 38 0.00083 27.2 3.2 31 157-187 21-51 (118)
31 cd07357 HN_L-whirlin_R2_like S 36.9 76 0.0016 25.2 4.6 60 147-207 13-76 (81)
32 PRK04778 septation ring format 36.7 1.9E+02 0.004 29.7 8.6 162 39-228 164-348 (569)
33 PRK00736 hypothetical protein; 34.0 1.3E+02 0.0028 22.6 5.3 19 45-63 3-21 (68)
34 PF12221 HflK_N: Bacterial mem 32.4 49 0.0011 23.0 2.6 21 4-24 17-37 (42)
35 PF04363 DUF496: Protein of un 31.3 63 0.0014 26.2 3.4 31 154-184 37-67 (95)
36 PF06160 EzrA: Septation ring 30.8 2.9E+02 0.0062 28.4 8.9 165 39-228 160-344 (560)
37 PF04859 DUF641: Plant protein 30.1 3.5E+02 0.0076 23.1 8.7 73 11-83 41-123 (131)
38 PF04136 Sec34: Sec34-like fam 29.5 97 0.0021 26.7 4.5 53 41-100 22-74 (157)
39 PF06148 COG2: COG (conserved 29.4 1.6E+02 0.0035 24.1 5.7 88 7-94 25-116 (133)
40 PF08317 Spc7: Spc7 kinetochor 28.2 4.4E+02 0.0095 25.1 9.1 41 13-57 185-226 (325)
41 smart00099 btg1 tob/btg1 famil 28.0 86 0.0019 26.0 3.7 30 158-187 12-43 (108)
42 PRK04778 septation ring format 27.5 2.6E+02 0.0057 28.7 7.9 54 37-90 272-325 (569)
43 PF04102 SlyX: SlyX; InterPro 27.5 2.5E+02 0.0054 20.9 5.9 7 19-25 4-10 (69)
44 PF08479 POTRA_2: POTRA domain 27.2 85 0.0018 23.1 3.3 42 149-190 13-55 (76)
45 COG1062 AdhC Zn-dependent alco 26.6 54 0.0012 32.5 2.7 26 158-183 324-352 (366)
46 PF14988 DUF4515: Domain of un 26.6 4.4E+02 0.0096 23.8 8.4 51 11-61 39-92 (206)
47 PF05531 NPV_P10: Nucleopolyhe 26.4 2.3E+02 0.0051 22.1 5.7 22 41-62 12-33 (75)
48 KOG3647 Predicted coiled-coil 26.2 5E+02 0.011 25.3 8.9 85 4-92 42-126 (338)
49 PF13591 MerR_2: MerR HTH fami 25.9 2.9E+02 0.0063 21.1 6.2 76 9-89 2-77 (84)
50 PF07889 DUF1664: Protein of u 24.7 4.3E+02 0.0093 22.4 8.4 75 9-94 40-115 (126)
51 PF12761 End3: Actin cytoskele 24.3 3.3E+02 0.0072 24.8 7.1 34 38-71 158-191 (195)
52 PHA03386 P10 fibrous body prot 23.7 4.1E+02 0.0088 21.7 7.7 55 40-101 12-67 (94)
53 KOG1924 RhoA GTPase effector D 23.3 1.1E+03 0.024 26.5 12.3 13 21-33 405-417 (1102)
54 PF06160 EzrA: Septation ring 23.2 3.8E+02 0.0083 27.5 8.2 54 39-92 270-323 (560)
55 PF09278 MerR-DNA-bind: MerR, 22.5 1.7E+02 0.0037 20.5 4.1 12 21-32 17-28 (65)
56 KOG0614 cGMP-dependent protein 22.3 3.3E+02 0.0073 29.0 7.5 17 240-256 225-241 (732)
57 PF08287 DASH_Spc19: Spc19; I 22.2 4.4E+02 0.0095 22.8 7.2 24 9-32 1-24 (153)
58 PF14915 CCDC144C: CCDC144C pr 21.5 5.8E+02 0.013 24.9 8.5 60 39-98 150-209 (305)
59 PF05549 Allexi_40kDa: Allexiv 21.4 4.2E+02 0.009 25.4 7.3 22 143-165 175-200 (271)
60 PF04156 IncA: IncA protein; 21.2 3.8E+02 0.0082 22.9 6.7 41 41-81 82-122 (191)
61 PF14389 Lzipper-MIP1: Leucine 21.0 96 0.0021 24.3 2.7 21 49-69 10-30 (88)
62 PF10046 BLOC1_2: Biogenesis o 20.5 2.8E+02 0.006 22.0 5.3 54 153-207 3-61 (99)
63 PF06705 SF-assemblin: SF-asse 20.5 6.4E+02 0.014 22.8 9.9 26 44-69 89-114 (247)
64 TIGR03358 VI_chp_5 type VI sec 20.5 1.4E+02 0.0031 26.2 3.9 26 7-32 94-120 (159)
65 PF05565 Sipho_Gp157: Siphovir 20.2 3E+02 0.0066 23.6 5.9 15 73-87 66-80 (162)
66 KOG4807 F-actin binding protei 20.1 7.3E+02 0.016 25.6 9.1 79 10-88 247-358 (593)
67 PF12325 TMF_TATA_bd: TATA ele 20.1 5.2E+02 0.011 21.6 9.9 53 39-91 60-112 (120)
No 1
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=100.00 E-value=6e-71 Score=500.31 Aligned_cols=238 Identities=39% Similarity=0.634 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhhcCCCCCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 035762 20 RIADLQELVIARNMYPVSTVAD-LSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSL 98 (268)
Q Consensus 20 rI~~lk~l~~lR~~~p~~~~~~-l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~nvP~~l 98 (268)
||++||++|++|+++++....+ |.+|+..+.++|.+++.++.+|++|.++++++|+|+++++.|+++++||++|+|+||
T Consensus 1 ki~~~~~~~~~r~~~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~hl~~nvP~~l 80 (243)
T PF07160_consen 1 KISELKELLSLRNMGQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQHLKENVPPHL 80 (243)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred ChHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 7999999999999966666555 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccc-ccccCCCCcccCCCCccC-CCCCCCCCcccCCCCCCCCccccChHHhhhhhHHhhhhcCHHHHHHHHH
Q 035762 99 SQTMSMLDLNT-TKTLLPESSKQQSNSVSF-KPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVN 176 (268)
Q Consensus 99 P~~~~~~~~~~-~s~~~~e~~~~~~~~~~~-~p~~~~~~~ke~k~r~i~~~~~IT~eEF~siP~YmrGRLTleqvN~~i~ 176 (268)
|...+.++.++ +++..+++..+.++..++ +++.+.+++| +++++|+|||||++||+|||+|||||||||+||++|+
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k--k~~~i~~~~~IT~eEF~sIPkYMrGRLTleqlN~~i~ 158 (243)
T PF07160_consen 81 PKKVQAVPQSSGSSSLVQENENDTPAPLKAEEQEAPKKPPK--KGRGIPPMWFITVEEFDSIPKYMRGRLTLEQLNAAID 158 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhcccccccccccccccccCccccCCcccCCCCCCCCc--cCCCCCccccccHHHHhcchHHHHhhccHHHHHHHHH
Confidence 98865442222 233223222222233333 2233444444 5589999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccchhhhcHHHHHHHHHHHhHhhhhccC-CeeeEecCccC-CCCccccchhhhHHHHHHhhchhhhh
Q 035762 177 DMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVK-GKHFFLENDVK-GPSLKLDNTGKAILTVLRHLGRISET 254 (268)
Q Consensus 177 ein~~~~~Ky~il~~pkk~l~~~~~~r~~el~~~~~~k~~k-g~~F~~e~Dik-~~~lKlDkt~k~il~iLRHl~Rl~E~ 254 (268)
+||+++++||+||++|+++|++..|.++..|+++ ++++++ |+|||||+||| ++++|+|+||++||+||||||||||+
T Consensus 159 ein~~~~~Ky~iL~~pkk~l~~~~r~~~~~~~~~-e~k~t~~G~~F~~E~Dik~~~~~KlDkt~~~iL~iLRH~~RL~E~ 237 (243)
T PF07160_consen 159 EINKAVEAKYKILAKPKKKLSNKQRNLYQRFKEQ-ETKDTKKGQYFFVEDDIKEFTQLKLDKTFKAILTILRHLGRLREV 237 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhHHHcCHHHHHHHHHHHHH-HhcccCCCceeeeHHHhhhccccccchhHHHHHHHHHHhhhHHhh
Confidence 9999999999999999999999999999999985 678888 99999999999 79999999999999999999999999
Q ss_pred ccCCeE
Q 035762 255 RIGHHR 260 (268)
Q Consensus 255 R~g~~~ 260 (268)
||||+|
T Consensus 238 R~g~~t 243 (243)
T PF07160_consen 238 RGGGLT 243 (243)
T ss_dssp ------
T ss_pred cCCCCC
Confidence 999986
No 2
>KOG4832 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.8e-61 Score=433.06 Aligned_cols=250 Identities=33% Similarity=0.455 Sum_probs=218.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH-HHHH
Q 035762 5 KAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDA-SLRQ 83 (268)
Q Consensus 5 ~~~~~Le~l~s~~n~rI~~lk~l~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~-~~~q 83 (268)
.|+||||+||+|||++|.+|++++++|+|+++..+.+|.++...+..+|.++|.+++.||.+.+++| ..+||.. ...+
T Consensus 1 ~a~SsLeSLIss~ne~igEl~kl~s~rnm~~e~TI~~L~aI~~~~~sieLllq~ikd~lrqqkeann-~geLc~~~y~~~ 79 (253)
T KOG4832|consen 1 MASSSLESLISSVNEKIGELKKLLSLRNMGQEPTIKVLNAIGDEIISIELLLQKIKDELRQQKEANN-LGELCESFYEED 79 (253)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHhcch
Confidence 4789999999999999999999999999999999999999999999999999999999999999999 8999998 7778
Q ss_pred HHHHHHhhhcCCCCCcccccccccccccccCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCccccChHHhhhhhHHhh
Q 035762 84 QKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQSNSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMR 163 (268)
Q Consensus 84 ~~~lqhm~~nvP~~lP~~~~~~~~~~~s~~~~e~~~~~~~~~~~~p~~~~~~~ke~k~r~i~~~~~IT~eEF~siP~Ymr 163 (268)
+.+..|.++|+|.++|...+.+++..+++. ..-..+++. ++.+.-+|++++|+|+|||+||++||+++|+||+
T Consensus 80 lfD~e~tk~e~~t~~~~~s~~a~qyk~ss~------~~l~elk~d-ee~~vl~kpKenrgI~p~p~ITveefnt~psyq~ 152 (253)
T KOG4832|consen 80 LFDIEHTKEEVPTHLPQVSVTASQYKGSSL------DPLEELKVD-EEEPVLKKPKENRGIKPMPFITVEEFNTVPSYQK 152 (253)
T ss_pred hcchHHHHhccchhhhHhhhhhHHHhcccc------cccccccCC-CcccccCCccccCCCCCCceeeeccCCCccHHHh
Confidence 889999999999999998766655433442 222344554 4445556666779999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHHhhhhhccchhhhcHHHHHHHHHHHhHh-hhhccCCeeeEecCccC-CCCccccchhhhH
Q 035762 164 GRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIA-TVEAVKGKHFFLENDVK-GPSLKLDNTGKAI 241 (268)
Q Consensus 164 GRLTleqvN~~i~ein~~~~~Ky~il~~pkk~l~~~~~~r~~el~~~~-~~k~~kg~~F~~e~Dik-~~~lKlDkt~k~i 241 (268)
|||||++||++|.+||.++-+||.++++|+.+| +.|.+....|++. +++++||+|||+|.||| ++.+|+|++|+++
T Consensus 153 gRLTlE~vN~~i~~m~l~~~sk~~~~~~~kls~--n~~e~~l~~R~i~~e~~~~kg~~Ff~EtDik~~~~lkld~~f~~~ 230 (253)
T KOG4832|consen 153 GRLTLEQVNDVIKEMNLAVISKYKILHQPKLSM--NSVERNLYHRFIDEETKDTKGRYFFVETDIKEFTTLKLDKKFHVL 230 (253)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHHHHHHhccCccEEEEeccccchhhhhcchhhhHH
Confidence 999999999999999999999999999998666 5555555555443 56799999999999999 7779999999999
Q ss_pred HHHHHhhchhhhhccCCeEEEEe
Q 035762 242 LTVLRHLGRISETRIGHHRVIIL 264 (268)
Q Consensus 242 l~iLRHl~Rl~E~R~g~~~~y~l 264 (268)
|+||||||||+|+||||+|+|++
T Consensus 231 l~~LRH~rRisE~R~ggltry~i 253 (253)
T KOG4832|consen 231 LNILRHCRRISEVRGGGLTRYVI 253 (253)
T ss_pred HHHHHHHHHHhhhhcCCceeecC
Confidence 99999999999999999999986
No 3
>PF11362 DUF3161: Protein of unknown function (DUF3161); InterPro: IPR021504 This eukaryotic family of proteins has no known function.
Probab=91.31 E-value=0.14 Score=41.15 Aligned_cols=40 Identities=30% Similarity=0.282 Sum_probs=35.1
Q ss_pred ccChHHhhhhhHHhhhhcCHHHHHHHHHHHHHHHHHhhhh
Q 035762 149 YITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHL 188 (268)
Q Consensus 149 ~IT~eEF~siP~YmrGRLTleqvN~~i~ein~~~~~Ky~i 188 (268)
.|+.++|.|+|.-.|+|--+++||+...-+......|...
T Consensus 7 pi~~~~f~sv~alvr~Rakl~diN~~yk~l~~~~~~kg~~ 46 (90)
T PF11362_consen 7 PITWDEFLSVPALVRRRAKLDDINAVYKFLADKAFKKGKS 46 (90)
T ss_pred CcchhhccccHHHHHhhhhcccccHHHHHHHHHHHHcCCc
Confidence 6999999999999999999999999988877766666554
No 4
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=79.74 E-value=11 Score=30.03 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=43.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcCCC
Q 035762 39 VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASS 96 (268)
Q Consensus 39 ~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~nvP~ 96 (268)
..++.+|+..|.++..++..++++-+ -+ ..+|++|.++..+-...+++...+.|.
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD-~l--~~~L~~LLesnrq~R~e~~~~~~~~~~ 79 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRND-HL--HAQLQELLESNRQIRLEFQEQLSKAPS 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-HH--HHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 56788999999999999999998832 22 337888998887777788888877764
No 5
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=74.92 E-value=7.9 Score=35.81 Aligned_cols=54 Identities=15% Similarity=0.208 Sum_probs=37.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcCC
Q 035762 39 VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYAS 95 (268)
Q Consensus 39 ~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~nvP 95 (268)
+.++.+++.+|+.+|.+|+++++.+-...+-+..+++....+ +.-..|+..|+|
T Consensus 28 ~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l---~hl~~nvP~~lp 81 (243)
T PF07160_consen 28 DQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKL---QHLKENVPPHLP 81 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCCCccc
Confidence 578999999999999999999998877777777777766655 334457888888
No 6
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=74.39 E-value=13 Score=38.20 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=56.6
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH-HH
Q 035762 10 LDSLI-SSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQK-IL 87 (268)
Q Consensus 10 Le~l~-s~~n~rI~~lk~l~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~-~l 87 (268)
=|+++ .||.+||++|-..+..=..--..-..+-.+|..-|...|.+-+...+.|.+....+..+++--+.-...|+ .+
T Consensus 410 RE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QL 489 (518)
T PF10212_consen 410 REQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQL 489 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 35664 99999999997665543311111144555666667777777777777777777778888876666666666 67
Q ss_pred HHhhhcC
Q 035762 88 QNMSSYA 94 (268)
Q Consensus 88 qhm~~nv 94 (268)
.-|.+||
T Consensus 490 s~MSEHL 496 (518)
T PF10212_consen 490 SMMSEHL 496 (518)
T ss_pred HHHHHHH
Confidence 7777765
No 7
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=69.03 E-value=71 Score=27.07 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=27.9
Q ss_pred ChHHhhhhhHHhhhhcCHHHHHHH-HHHHHHHHHHhhhhh
Q 035762 151 TSDELDSLSSYMRGRLTLEKVNAA-VNDMATYAEANAHLI 189 (268)
Q Consensus 151 T~eEF~siP~YmrGRLTleqvN~~-i~ein~~~~~Ky~il 189 (268)
-.+|...+=.=+.+.|.--+=|.. |++|+.++..-|..|
T Consensus 120 ~d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~~~L 159 (160)
T PF13094_consen 120 CDEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSYAAL 159 (160)
T ss_pred chHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc
Confidence 466777777777777776677777 778888777777654
No 8
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=67.10 E-value=12 Score=29.05 Aligned_cols=61 Identities=20% Similarity=0.391 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 035762 5 KAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKL 76 (268)
Q Consensus 5 ~~~~~Le~l~s~~n~rI~~lk~l~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L 76 (268)
-...+++.-.+.|.-||.+.|.++. ++.+++.++...|.+++..+++++.=.+.|.++++.
T Consensus 21 ~~~kd~~~~~~~lk~Klq~ar~~i~-----------~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 21 LSSKDLDTATGSLKHKLQKARAAIR-----------ELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-----------hCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777777888888888776643 334477777777777777777744444445554443
No 9
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=67.04 E-value=45 Score=32.68 Aligned_cols=81 Identities=22% Similarity=0.274 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 035762 7 GSSLDSLISSFNTRIADLQELVIARNM----YPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLR 82 (268)
Q Consensus 7 ~~~Le~l~s~~n~rI~~lk~l~~lR~~----~p~~~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~ 82 (268)
-++||+++++++.+|..|.+-+.-..- .......+|......+..|-.++..++.. -.+-+..|..+-+
T Consensus 20 L~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~k-------A~~sE~~V~~it~ 92 (383)
T PF04100_consen 20 LSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSK-------AEESEQMVQEITR 92 (383)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 478999999999999988776543322 22233567888888899999999998887 3344445555555
Q ss_pred HHHHHHHhhhcC
Q 035762 83 QQKILQNMSSYA 94 (268)
Q Consensus 83 q~~~lqhm~~nv 94 (268)
+.+.|-..+.|+
T Consensus 93 dIk~LD~AKrNL 104 (383)
T PF04100_consen 93 DIKQLDNAKRNL 104 (383)
T ss_pred HHHHHHHHHHHH
Confidence 666666666665
No 10
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=62.60 E-value=75 Score=27.57 Aligned_cols=60 Identities=15% Similarity=0.312 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 035762 7 GSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIPK 72 (268)
Q Consensus 7 ~~~Le~l~s~~n~rI~~lk~l~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~ 72 (268)
.+++|....-|...|++||.=+... .-.++..+......+..++..+++.|++|...+..
T Consensus 46 k~d~e~~~~~~~a~~~eLr~el~~~------~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 46 KSDLENQEYLFKAAIAELRSELQNS------RKSEFAELRSENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888887655432 34677888888888999999999999998776554
No 11
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=61.23 E-value=2.7 Score=37.76 Aligned_cols=29 Identities=24% Similarity=0.739 Sum_probs=0.9
Q ss_pred ccChHHhhhhhHHh--hhhcCHHHHHHHHHH
Q 035762 149 YITSDELDSLSSYM--RGRLTLEKVNAAVND 177 (268)
Q Consensus 149 ~IT~eEF~siP~Ym--rGRLTleqvN~~i~e 177 (268)
|||.+|+++|-+|+ |||+|+..|-...+.
T Consensus 155 yIs~eE~~~va~fi~~rGRvsi~el~~~~N~ 185 (188)
T PF09756_consen 155 YISEEEMEAVAKFIKQRGRVSISELAQESNR 185 (188)
T ss_dssp E------------------------------
T ss_pred EecHHHHHHHHHHHHHcCCccHHHHHHHHHh
Confidence 99999999999998 699998887665543
No 12
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=59.01 E-value=63 Score=27.19 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcCCCC
Q 035762 44 AIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSS 97 (268)
Q Consensus 44 ~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~nvP~~ 97 (268)
.+...++.++.+++.++.+ +..++++.+.++.. .-.+|..++|+.
T Consensus 78 ~~~~~~~~l~~~i~~Le~~-------l~~L~~~~~~l~~~--~~~~~~~~~~~~ 122 (134)
T cd04779 78 EVAQEVQLVCDQIDGLEHR-------LKQLKPIASQTDRA--QRMKMTKELSQQ 122 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--HHHHHHHhcCHH
Confidence 3444555555555555555 56666666655553 345788888654
No 13
>PRK02119 hypothetical protein; Provisional
Probab=55.88 E-value=48 Score=25.27 Aligned_cols=24 Identities=4% Similarity=0.164 Sum_probs=19.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 035762 40 ADLSAIDAAVKAVELQVQAIKSRV 63 (268)
Q Consensus 40 ~~l~~l~~~L~~lE~qv~~~~~~l 63 (268)
.++..+++=+..||..+.+|++.|
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~ti 25 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLL 25 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888889999999999983
No 14
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.31 E-value=78 Score=34.19 Aligned_cols=83 Identities=19% Similarity=0.219 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 035762 7 GSSLDSLISSFNTRIADLQELVIARNMYPVS----TVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLR 82 (268)
Q Consensus 7 ~~~Le~l~s~~n~rI~~lk~l~~lR~~~p~~----~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~ 82 (268)
-..+|.++..+..+|.++.+-+..=.-.... ...+|.....++..++..++.+++. -.+-.+.|.-.-.
T Consensus 35 L~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~-------ae~Te~~V~eiTr 107 (793)
T KOG2180|consen 35 LTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSV-------AESTEAMVQEITR 107 (793)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHH
Confidence 4678999999999999988766543321111 2667788888999999999998887 4455556666666
Q ss_pred HHHHHHHhhhcCCC
Q 035762 83 QQKILQNMSSYASS 96 (268)
Q Consensus 83 q~~~lqhm~~nvP~ 96 (268)
+.+.|-+.+.|+-+
T Consensus 108 dIKqLD~AKkNLTt 121 (793)
T KOG2180|consen 108 DIKQLDFAKKNLTT 121 (793)
T ss_pred HHHhhhHHHhhHHH
Confidence 77777777777643
No 15
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=49.61 E-value=1.4e+02 Score=25.51 Aligned_cols=52 Identities=12% Similarity=0.334 Sum_probs=29.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHh
Q 035762 39 VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNM 90 (268)
Q Consensus 39 ~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm 90 (268)
...+.+++.....++.++....+-++++.+....++.-++.+...+.+++.+
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEK 180 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677777777777777777444444444444444444444444444333
No 16
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.42 E-value=66 Score=24.02 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcC
Q 035762 45 IDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYA 94 (268)
Q Consensus 45 l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~nv 94 (268)
+++-|..||..+.++++. +..|-+.+..-.++..+|+.....+
T Consensus 2 le~Ri~~LE~~la~qe~~-------ie~Ln~~v~~Qq~~I~~L~~~l~~L 44 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDT-------IEELNDVVTEQQRQIDRLQRQLRLL 44 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999998 5555555555544444444444333
No 17
>PRK04325 hypothetical protein; Provisional
Probab=45.28 E-value=81 Score=24.06 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 035762 42 LSAIDAAVKAVELQVQAIKSR 62 (268)
Q Consensus 42 l~~l~~~L~~lE~qv~~~~~~ 62 (268)
.-.+++-+..||..+.+|++.
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~t 24 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDL 24 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 345666788899999999998
No 18
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=42.84 E-value=2.3e+02 Score=24.75 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCccchH--HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 035762 9 SLDSLISSFNTRIADLQELVIARNMY-PVSTVADLS--AIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQK 85 (268)
Q Consensus 9 ~Le~l~s~~n~rI~~lk~l~~lR~~~-p~~~~~~l~--~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~ 85 (268)
+...+..++..-+..|+-+-.+++.. |--..+||. .....+.++|..+..+... +..+.+...++.++..
T Consensus 23 ~~~~~l~sl~nL~eqL~al~~~~~~~~pL~~fpdl~~rL~~Kq~~ale~vl~~L~e~-------l~~l~~v~~~l~~~~~ 95 (168)
T PF15011_consen 23 RCLPLLSSLANLAEQLQALQNVKNYGTPLRSFPDLQERLRRKQLEALETVLAKLRET-------LEELQKVRDSLSRQVR 95 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34445555566666666666666654 444466666 5667777888888888777 8889999999999999
Q ss_pred HHHHhhhcC
Q 035762 86 ILQNMSSYA 94 (268)
Q Consensus 86 ~lqhm~~nv 94 (268)
++.++.+.-
T Consensus 96 ~~~~l~~~~ 104 (168)
T PF15011_consen 96 DVFQLYEQH 104 (168)
T ss_pred HHHHHHHhc
Confidence 999998843
No 19
>PRK02793 phi X174 lysis protein; Provisional
Probab=42.71 E-value=91 Score=23.65 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035762 44 AIDAAVKAVELQVQAIKSRV 63 (268)
Q Consensus 44 ~l~~~L~~lE~qv~~~~~~l 63 (268)
.++.-+..||..+.+|++.+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tI 24 (72)
T PRK02793 5 SLEARLAELESRLAFQEITI 24 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46677888999999999983
No 20
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=41.32 E-value=83 Score=36.06 Aligned_cols=55 Identities=13% Similarity=0.312 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 035762 7 GSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVRE 65 (268)
Q Consensus 7 ~~~Le~l~s~~n~rI~~lk~l~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~~~~lqe 65 (268)
.+.+++=..+.-+|+.+||.+|+.+++ ...++..|...+..|+.+++.....|-.
T Consensus 1196 ~gay~s~f~~me~kl~~ir~il~~~sv----s~~~i~~l~~~~~~lr~~l~~~~e~L~~ 1250 (1758)
T KOG0994|consen 1196 LGAYASRFLDMEEKLEEIRAILSAPSV----SAEDIAQLASATESLRRQLQALTEDLPQ 1250 (1758)
T ss_pred chhhHhHHHHHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345566667788899999988887663 4455555555555566666555444433
No 21
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=40.72 E-value=67 Score=35.82 Aligned_cols=81 Identities=14% Similarity=0.242 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-hhc--------------CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 035762 7 GSSLDSLISSFNTRIADLQELVIA-RNM--------------YPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIP 71 (268)
Q Consensus 7 ~~~Le~l~s~~n~rI~~lk~l~~l-R~~--------------~p~~~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~ 71 (268)
.++.++++.|||-+|+||=..|.= |.. .-+....+|...+.-|..+...-+.+++.+..=.+.+.
T Consensus 126 ~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~ 205 (1072)
T KOG0979|consen 126 KSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLN 205 (1072)
T ss_pred hHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 678899999999999998665521 222 22222444665555556677777888888888888888
Q ss_pred hHHHHHHHHHHHHHHH
Q 035762 72 KAKKLIDASLRQQKIL 87 (268)
Q Consensus 72 ~lk~L~~~~~~q~~~l 87 (268)
+++..++.+.++.+++
T Consensus 206 ~L~~~~~~l~kdVE~~ 221 (1072)
T KOG0979|consen 206 RLEDEIDKLEKDVERV 221 (1072)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887776654
No 22
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=38.88 E-value=1.9e+02 Score=22.60 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCccchHHHHHHHHHHHHHHHHH
Q 035762 9 SLDSLISSFNTRIADLQELVIARNM-YPVSTVADLSAIDAAVKAVELQVQAI 59 (268)
Q Consensus 9 ~Le~l~s~~n~rI~~lk~l~~lR~~-~p~~~~~~l~~l~~~L~~lE~qv~~~ 59 (268)
..++|...+...+..+++|+.+=.- ..++...|+..|+.++...+..+..+
T Consensus 2 ~~~~L~~~L~~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l 53 (143)
T PF05130_consen 2 AIEELIELLEEQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEEL 53 (143)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3567777788888888777766543 23333445555555555544444333
No 23
>PRK09039 hypothetical protein; Validated
Probab=38.73 E-value=1.6e+02 Score=28.39 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=33.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HHHHHHhhhcCCCCC
Q 035762 40 ADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQ-QKILQNMSSYASSSL 98 (268)
Q Consensus 40 ~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q-~~~lqhm~~nvP~~l 98 (268)
.++.+|.+.|.++|.+++..+.+.++--..+..++.-++....+ -++|..+++++=..|
T Consensus 144 ~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l 203 (343)
T PRK09039 144 QQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRL 203 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45556666666666666666666544444455665544444433 566777777664333
No 24
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=38.58 E-value=18 Score=27.69 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=11.4
Q ss_pred hhhhcCHHHHHHHHH
Q 035762 162 MRGRLTLEKVNAAVN 176 (268)
Q Consensus 162 mrGRLTleqvN~~i~ 176 (268)
-+|.|||++||.++.
T Consensus 18 ~~G~lT~~eI~~~L~ 32 (82)
T PF03979_consen 18 KKGYLTYDEINDALP 32 (82)
T ss_dssp HHSS-BHHHHHHH-S
T ss_pred hcCcCCHHHHHHHcC
Confidence 378999999999986
No 25
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=38.32 E-value=60 Score=26.18 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcCCCC
Q 035762 50 KAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSS 97 (268)
Q Consensus 50 ~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~nvP~~ 97 (268)
++.+.+++.+++.+++.......+.++......-.+++..+...+|+.
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~ 49 (144)
T PF04350_consen 2 KTLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAE 49 (144)
T ss_dssp ----------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 345556666666666666666777777777777777888888888876
No 26
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.81 E-value=21 Score=33.91 Aligned_cols=26 Identities=27% Similarity=0.726 Sum_probs=21.9
Q ss_pred cccChHHhhhhhHHh--hhhcCHHHHHH
Q 035762 148 WYITSDELDSLSSYM--RGRLTLEKVNA 173 (268)
Q Consensus 148 ~~IT~eEF~siP~Ym--rGRLTleqvN~ 173 (268)
-|||.+||..|-+|+ |||++.-.|-.
T Consensus 255 IYIS~eEl~AVAkfIkqrGRVSIaelAe 282 (299)
T KOG3054|consen 255 IYISMEELAAVAKFIKQRGRVSIAELAE 282 (299)
T ss_pred EEecHHHHHHHHHHHHHcCceeHHHHHH
Confidence 399999999999998 58999776644
No 27
>PRK00295 hypothetical protein; Provisional
Probab=37.75 E-value=1.1e+02 Score=22.88 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035762 45 IDAAVKAVELQVQAIKSR 62 (268)
Q Consensus 45 l~~~L~~lE~qv~~~~~~ 62 (268)
+++-+..||..+.+|++.
T Consensus 3 ~e~Ri~~LE~kla~qE~t 20 (68)
T PRK00295 3 LEERVTELESRQAFQDDT 20 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455678899999999988
No 28
>PRK04406 hypothetical protein; Provisional
Probab=37.74 E-value=1.3e+02 Score=23.12 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035762 44 AIDAAVKAVELQVQAIKSR 62 (268)
Q Consensus 44 ~l~~~L~~lE~qv~~~~~~ 62 (268)
.++.-+..||..+.+|++.
T Consensus 8 ~le~Ri~~LE~~lAfQE~t 26 (75)
T PRK04406 8 QLEERINDLECQLAFQEQT 26 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677788899999999998
No 29
>PRK00846 hypothetical protein; Provisional
Probab=37.57 E-value=1.2e+02 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035762 44 AIDAAVKAVELQVQAIKSRVR 64 (268)
Q Consensus 44 ~l~~~L~~lE~qv~~~~~~lq 64 (268)
.++.-|..||..+.+|++.+.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe 30 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALT 30 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 466778889999999999943
No 30
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=37.35 E-value=38 Score=27.17 Aligned_cols=31 Identities=10% Similarity=0.205 Sum_probs=25.8
Q ss_pred hhhHHhhhhcCHHHHHHHHHHHHHHHHHhhh
Q 035762 157 SLSSYMRGRLTLEKVNAAVNDMATYAEANAH 187 (268)
Q Consensus 157 siP~YmrGRLTleqvN~~i~ein~~~~~Ky~ 187 (268)
..|.=+.|++|.++...+|+.||..+...|.
T Consensus 21 ~~P~~L~~~is~~ef~~iI~~IN~~l~~a~~ 51 (118)
T PF10256_consen 21 EYPGELSGYISPEEFEEIINTINQILKEAFE 51 (118)
T ss_pred cCCHhhcCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3455589999999999999999999887754
No 31
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=36.92 E-value=76 Score=25.21 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=42.0
Q ss_pred ccccChHHhhhhhHH----hhhhcCHHHHHHHHHHHHHHHHHhhhhhccchhhhcHHHHHHHHHH
Q 035762 147 LWYITSDELDSLSSY----MRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALEL 207 (268)
Q Consensus 147 ~~~IT~eEF~siP~Y----mrGRLTleqvN~~i~ein~~~~~Ky~il~~pkk~l~~~~~~r~~el 207 (268)
+..+|.+||.++.-| -.|++|.|.+-.++-++-.. .+|+.+|.--|.-++..+..||-.+
T Consensus 13 r~lL~e~E~~tm~yyl~eY~~~~~tVealV~aL~elLnt-~~K~sLLsEiR~lI~p~Dl~RFD~L 76 (81)
T cd07357 13 RHLLSENERATLSYYLDEYRSGHISVDALVMALFELLNT-HEKFSLLSEIRELISPQDLDRFDDL 76 (81)
T ss_pred HHHcCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHhcChhhhhHHHHH
Confidence 447899999998765 56899998887776654322 4567777666666666667776554
No 32
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.73 E-value=1.9e+02 Score=29.74 Aligned_cols=162 Identities=15% Similarity=0.159 Sum_probs=101.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcCCCCCccccc--ccccccccccCCC
Q 035762 39 VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMS--MLDLNTTKTLLPE 116 (268)
Q Consensus 39 ~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~nvP~~lP~~~~--~~~~~~~s~~~~e 116 (268)
|+.+..|+..|..+|.+...+... .+..---.+++....+..+...|.++.+.||+-+-.... +.++.
T Consensus 164 G~a~~~le~~l~~~e~~f~~f~~l--~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~-------- 233 (569)
T PRK04778 164 GPALDELEKQLENLEEEFSQFVEL--TESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQ-------- 233 (569)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------
Confidence 888999999999999998888775 222222457788888999999999999999987655421 11110
Q ss_pred CcccCCCCccCCCCCCCCCcccC--CCCCCCCccccChHHhhhhhHH------hhhhcCHHHHHHHHHHHHHHHHHhhhh
Q 035762 117 SSKQQSNSVSFKPEEPAALPKEK--KGRGSPPLWYITSDELDSLSSY------MRGRLTLEKVNAAVNDMATYAEANAHL 188 (268)
Q Consensus 117 ~~~~~~~~~~~~p~~~~~~~ke~--k~r~i~~~~~IT~eEF~siP~Y------mrGRLTleqvN~~i~ein~~~~~Ky~i 188 (268)
+-..+-++. ++=.++... -..+++.|-.= +-|.+.++.+.+.+++|+.-+..=|.+
T Consensus 234 --------------el~~gy~~m~~~gy~~~~~~--i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~ 297 (569)
T PRK04778 234 --------------ELKAGYRELVEEGYHLDHLD--IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDI 297 (569)
T ss_pred --------------HHHHHHHHHHHcCCCCCCCC--hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 122333211 13445444433 457999999999999999999999998
Q ss_pred hccchhhhcH-------------HHHHHHHHHHhHhhhhccCCeeeEecCccC
Q 035762 189 ISAPKKKLAG-------------NLWERALELRDIATVEAVKGKHFFLENDVK 228 (268)
Q Consensus 189 l~~pkk~l~~-------------~~~~r~~el~~~~~~k~~kg~~F~~e~Dik 228 (268)
|.+-..+-.. ..-....++. .+...++-.|.+.++|+.
T Consensus 298 lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~--~Ei~~l~~sY~l~~~e~~ 348 (569)
T PRK04778 298 LEREVKARKYVEKNSDTLPDFLEHAKEQNKELK--EEIDRVKQSYTLNESELE 348 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHccccCchhHH
Confidence 8776643221 1111111111 244566677888888877
No 33
>PRK00736 hypothetical protein; Provisional
Probab=33.97 E-value=1.3e+02 Score=22.57 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035762 45 IDAAVKAVELQVQAIKSRV 63 (268)
Q Consensus 45 l~~~L~~lE~qv~~~~~~l 63 (268)
++.-+..||..+.+|++.+
T Consensus 3 ~e~Ri~~LE~klafqe~ti 21 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTI 21 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999883
No 34
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=32.41 E-value=49 Score=23.00 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 035762 4 KKAGSSLDSLISSFNTRIADL 24 (268)
Q Consensus 4 ~~~~~~Le~l~s~~n~rI~~l 24 (268)
++..++||+|..-|+.|++.+
T Consensus 17 ~~gPPDLdel~r~l~~kl~~~ 37 (42)
T PF12221_consen 17 NQGPPDLDELFRKLQDKLGGL 37 (42)
T ss_pred CCCCCCHHHHHHHHHHHHhcc
Confidence 345899999999999999865
No 35
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=31.26 E-value=63 Score=26.24 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=26.9
Q ss_pred HhhhhhHHhhhhcCHHHHHHHHHHHHHHHHH
Q 035762 154 ELDSLSSYMRGRLTLEKVNAAVNDMATYAEA 184 (268)
Q Consensus 154 EF~siP~YmrGRLTleqvN~~i~ein~~~~~ 184 (268)
=++.+..|++..+|++.|.++|..|-.-.+.
T Consensus 37 LLdNL~~YI~~~Ms~edi~~II~nMr~DYEd 67 (95)
T PF04363_consen 37 LLDNLSDYIKPDMSIEDIRAIIENMRSDYED 67 (95)
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHhHHHH
Confidence 3789999999999999999999988766543
No 36
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.75 E-value=2.9e+02 Score=28.44 Aligned_cols=165 Identities=12% Similarity=0.130 Sum_probs=93.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcCCCCCcccc--cccccccccccCCC
Q 035762 39 VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTM--SMLDLNTTKTLLPE 116 (268)
Q Consensus 39 ~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~nvP~~lP~~~--~~~~~~~~s~~~~e 116 (268)
|+.+..|+.-|..+|.+...+... .+-.---.+++....+......+.++.+.||.-+-.-. .+.+++.-..
T Consensus 160 G~a~~~Le~~L~~ie~~F~~f~~l--t~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~---- 233 (560)
T PF06160_consen 160 GPAIEELEKQLENIEEEFSEFEEL--TENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKE---- 233 (560)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHH----
Confidence 888889999999999998888776 11112235778888899999999999999998776532 1111100000
Q ss_pred CcccCCCCccCCCCCCCCCcccCCCCCCCCccc-----cChHHhhhhhHHhhhhcCHHHHHHHHHHHHHHHHHhhhhhcc
Q 035762 117 SSKQQSNSVSFKPEEPAALPKEKKGRGSPPLWY-----ITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISA 191 (268)
Q Consensus 117 ~~~~~~~~~~~~p~~~~~~~ke~k~r~i~~~~~-----IT~eEF~siP~YmrGRLTleqvN~~i~ein~~~~~Ky~il~~ 191 (268)
+- .. .++ .+-.++.+.. --.+..+..-..+ ..|.++.+-..+++|..-+..=|.+|.+
T Consensus 234 --gy----~~---------m~~-~gy~l~~~~i~~~i~~i~~~l~~~~~~L-~~l~l~~~~~~~~~i~~~Id~lYd~le~ 296 (560)
T PF06160_consen 234 --GY----RE---------MEE-EGYYLEHLDIEEEIEQIEEQLEEALALL-KNLELDEVEEENEEIEERIDQLYDILEK 296 (560)
T ss_pred --HH----HH---------HHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 000 1112221111 1122333333344 6788888888888888887777777655
Q ss_pred chhhh----------cH---HHHHHHHHHHhHhhhhccCCeeeEecCccC
Q 035762 192 PKKKL----------AG---NLWERALELRDIATVEAVKGKHFFLENDVK 228 (268)
Q Consensus 192 pkk~l----------~~---~~~~r~~el~~~~~~k~~kg~~F~~e~Dik 228 (268)
=-.+- .+ ........+. .+.+.+...|-+.++++.
T Consensus 297 E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~--~e~~~v~~sY~L~~~e~~ 344 (560)
T PF06160_consen 297 EVEAKKYVEKNLKELYEYLEHAKEQNKELK--EELERVSQSYTLNHNELE 344 (560)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCCchHHH
Confidence 44321 11 1122222221 244566677777777775
No 37
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=30.11 E-value=3.5e+02 Score=23.08 Aligned_cols=73 Identities=16% Similarity=0.319 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc------CCCCC----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 035762 11 DSLISSFNTRIADLQELVIARNM------YPVST----VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDAS 80 (268)
Q Consensus 11 e~l~s~~n~rI~~lk~l~~lR~~------~p~~~----~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~ 80 (268)
|.+-++=.-=|++|++|-.++.+ .|+-. ..++.....++...|.-+..++..++.=-..+..|++-.+.+
T Consensus 41 d~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~ 120 (131)
T PF04859_consen 41 DKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDEL 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444456788888888776 23311 344445556677777777766666555444555555544444
Q ss_pred HHH
Q 035762 81 LRQ 83 (268)
Q Consensus 81 ~~q 83 (268)
...
T Consensus 121 ~~~ 123 (131)
T PF04859_consen 121 NRA 123 (131)
T ss_pred HHH
Confidence 333
No 38
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=29.48 E-value=97 Score=26.67 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 035762 41 DLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQ 100 (268)
Q Consensus 41 ~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~nvP~~lP~ 100 (268)
++..+...|+.|..+-..+... -..+.+-++.+..++.++..+.+.|+..|--
T Consensus 22 ~~~~~~~~l~~l~~~~~~Vs~k-------T~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~y 74 (157)
T PF04136_consen 22 QTDEILDQLDELQEQYNSVSEK-------TNSLHEACEQLLEEQTRLEELAEEISEKLQY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445556666666666666665 5677788899999999999999999887754
No 39
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=29.43 E-value=1.6e+02 Score=24.07 Aligned_cols=88 Identities=15% Similarity=0.227 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHhhc-CCCC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 035762 7 GSSLDSLISSFNTRIADLQELV-IARNM-YPVS--TVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLR 82 (268)
Q Consensus 7 ~~~Le~l~s~~n~rI~~lk~l~-~lR~~-~p~~--~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~ 82 (268)
..+||+|...+..--..|++-+ .+=|- |... =+..|.++++.++.+-..+..++..+..=...+....+-++....
T Consensus 25 ~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~ 104 (133)
T PF06148_consen 25 YVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLE 104 (133)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888877777776665432 33332 2221 166677777777777777777777777766777777777777777
Q ss_pred HHHHHHHhhhcC
Q 035762 83 QQKILQNMSSYA 94 (268)
Q Consensus 83 q~~~lqhm~~nv 94 (268)
+.+.+...+.-+
T Consensus 105 ~~~~l~~~k~~l 116 (133)
T PF06148_consen 105 ERKELREEKALL 116 (133)
T ss_dssp HHHHHHHHHHT-
T ss_pred HHHHHHHHHHHH
Confidence 777777766444
No 40
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.15 E-value=4.4e+02 Score=25.05 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHH-HhhcCCCCCccchHHHHHHHHHHHHHHH
Q 035762 13 LISSFNTRIADLQELVI-ARNMYPVSTVADLSAIDAAVKAVELQVQ 57 (268)
Q Consensus 13 l~s~~n~rI~~lk~l~~-lR~~~p~~~~~~l~~l~~~L~~lE~qv~ 57 (268)
.-..+..+|.+|+.... +-+++ ..+|.++-..|...+.++.
T Consensus 185 ~~~~L~~e~~~Lk~~~~e~~~~D----~~eL~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 185 RKAELEEELENLKQLVEEIESCD----QEELEALRQELAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcC----HHHHHHHHHHHHHHHHHHH
Confidence 33445555555555443 22222 2344444444444444444
No 41
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=27.96 E-value=86 Score=25.97 Aligned_cols=30 Identities=10% Similarity=0.275 Sum_probs=25.8
Q ss_pred hhHHh--hhhcCHHHHHHHHHHHHHHHHHhhh
Q 035762 158 LSSYM--RGRLTLEKVNAAVNDMATYAEANAH 187 (268)
Q Consensus 158 iP~Ym--rGRLTleqvN~~i~ein~~~~~Ky~ 187 (268)
|.+|+ .|||.-++|+.+-+++..++..+|+
T Consensus 12 l~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~ 43 (108)
T smart00099 12 ITSLLRKHNKLSKRRVEIFAEKLTRLLKEKYK 43 (108)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 56788 8889999999999888888888887
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.50 E-value=2.6e+02 Score=28.67 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=41.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHh
Q 035762 37 STVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNM 90 (268)
Q Consensus 37 ~~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm 90 (268)
+..-+|-.+.+.++.++.+++.+-+.|..|..|.+.+.+....+.....++...
T Consensus 272 l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~ 325 (569)
T PRK04778 272 LEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQ 325 (569)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345677888899999999999999999999999888887666655544444433
No 43
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=27.49 E-value=2.5e+02 Score=20.86 Aligned_cols=7 Identities=43% Similarity=0.809 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 035762 19 TRIADLQ 25 (268)
Q Consensus 19 ~rI~~lk 25 (268)
+||..|.
T Consensus 4 ~Ri~~LE 10 (69)
T PF04102_consen 4 ERIEELE 10 (69)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 44
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=27.22 E-value=85 Score=23.08 Aligned_cols=42 Identities=19% Similarity=0.424 Sum_probs=30.4
Q ss_pred ccChHHhhhh-hHHhhhhcCHHHHHHHHHHHHHHHHHhhhhhc
Q 035762 149 YITSDELDSL-SSYMRGRLTLEKVNAAVNDMATYAEANAHLIS 190 (268)
Q Consensus 149 ~IT~eEF~si-P~YmrGRLTleqvN~~i~ein~~~~~Ky~il~ 190 (268)
.++.++++.+ -.|.-..+|...|+.+++.|+.++..+-=+.+
T Consensus 13 ~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s 55 (76)
T PF08479_consen 13 LLPEEELQAILAPYIGRCLTLADLQQLADALTNYYREKGYITS 55 (76)
T ss_dssp SSSCCHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-
T ss_pred cCCHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCceEE
Confidence 5666778877 44555567999999999999999888766544
No 45
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=26.62 E-value=54 Score=32.52 Aligned_cols=26 Identities=23% Similarity=0.548 Sum_probs=17.8
Q ss_pred hhHHhhhhcCHHHHHH---HHHHHHHHHH
Q 035762 158 LSSYMRGRLTLEKVNA---AVNDMATYAE 183 (268)
Q Consensus 158 iP~YmrGRLTleqvN~---~i~ein~~~~ 183 (268)
|.-||.||+.+|.+-. -+++||+++.
T Consensus 324 v~~y~~Gkl~~d~lvt~~~~Le~INeaf~ 352 (366)
T COG1062 324 VDLYMAGKLPLDRLVTHTIPLEDINEAFD 352 (366)
T ss_pred HHHHHcCCCchhHHhhccccHHHHHHHHH
Confidence 4569999888777655 3456776653
No 46
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=26.57 E-value=4.4e+02 Score=23.77 Aligned_cols=51 Identities=14% Similarity=0.291 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cCCCCC--ccchHHHHHHHHHHHHHHHHHHH
Q 035762 11 DSLISSFNTRIADLQELVIARN-MYPVST--VADLSAIDAAVKAVELQVQAIKS 61 (268)
Q Consensus 11 e~l~s~~n~rI~~lk~l~~lR~-~~p~~~--~~~l~~l~~~L~~lE~qv~~~~~ 61 (268)
+.+.+.++.+|+.|+.-+.=+. ..+.++ ..+|..+...=...|.+++.++.
T Consensus 39 ~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~ 92 (206)
T PF14988_consen 39 QELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEE 92 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999998554443 223332 44444444444445555554443
No 47
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.37 E-value=2.3e+02 Score=22.09 Aligned_cols=22 Identities=36% Similarity=0.589 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 035762 41 DLSAIDAAVKAVELQVQAIKSR 62 (268)
Q Consensus 41 ~l~~l~~~L~~lE~qv~~~~~~ 62 (268)
++.+++.-+.+++.+|...+..
T Consensus 12 dIk~vd~KVdaLq~~V~~l~~~ 33 (75)
T PF05531_consen 12 DIKAVDDKVDALQTQVDDLESN 33 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5666666666666666666665
No 48
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.19 E-value=5e+02 Score=25.32 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=51.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 035762 4 KKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQ 83 (268)
Q Consensus 4 ~~~~~~Le~l~s~~n~rI~~lk~l~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q 83 (268)
+|...--+++-+-|.+||.+++++-.|-.-.|.. | ..|.++|..=+..-+......++-++.+.-=|.|..+.+.-
T Consensus 42 ~d~~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~-g---~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i 117 (338)
T KOG3647|consen 42 NDEEDQRDQYRSLIGDKIEELRKARELATDLTQR-G---TTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAI 117 (338)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhhcccc-c---hHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 3446667888899999999999988887643332 2 24555666555555555555555555444444555555555
Q ss_pred HHHHHHhhh
Q 035762 84 QKILQNMSS 92 (268)
Q Consensus 84 ~~~lqhm~~ 92 (268)
+.++|..+.
T Consensus 118 ~~~~q~~~~ 126 (338)
T KOG3647|consen 118 QVRLQSSRA 126 (338)
T ss_pred HHHHHHHHH
Confidence 555555443
No 49
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=25.88 E-value=2.9e+02 Score=21.11 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 035762 9 SLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQ 88 (268)
Q Consensus 9 ~Le~l~s~~n~rI~~lk~l~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lq 88 (268)
+++++|.+.+=-.+-|.+++...-+.|....++-.--...+..++.- .+|+.+++..+..=.++-.+..+.+.|+
T Consensus 2 s~~e~~~~~~i~~~~l~~lve~Gli~p~~~~~~~~f~~~~l~rl~~~-----~rL~~Dl~in~~gi~lil~LLd~i~~L~ 76 (84)
T PF13591_consen 2 SLEEFCEACGIEPEFLRELVEEGLIEPEGEEEEWYFSEEDLARLRRI-----RRLHRDLGINLEGIALILDLLDRIEQLR 76 (84)
T ss_pred CHHHHHHHHCcCHHHHHHHHHCCCeeecCCCCeeeECHHHHHHHHHH-----HHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 57899988888888999999888887665432222122222223332 2577788888887777777766666655
Q ss_pred H
Q 035762 89 N 89 (268)
Q Consensus 89 h 89 (268)
.
T Consensus 77 ~ 77 (84)
T PF13591_consen 77 R 77 (84)
T ss_pred H
Confidence 4
No 50
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.74 E-value=4.3e+02 Score=22.36 Aligned_cols=75 Identities=12% Similarity=0.185 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 035762 9 SLDSLISSFNTRIADLQELVIARNMYPVST-VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKIL 87 (268)
Q Consensus 9 ~Le~l~s~~n~rI~~lk~l~~lR~~~p~~~-~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~l 87 (268)
+|.+-|+.+..++..+-+.|.-=.- + .+-|..|+..|++.....+.+++ | ...+++=++....+.+.+
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKk----hLsqRId~vd~klDe~~ei~~~i~~----e---V~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKK----HLSQRIDRVDDKLDEQKEISKQIKD----E---VTEVREDVSQIGDDVDSV 108 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHHH----H---HHHHHhhHHHHHHHHHHH
Confidence 4566666666555555444332110 0 11133444444433333333333 2 345666666677777777
Q ss_pred HHhhhcC
Q 035762 88 QNMSSYA 94 (268)
Q Consensus 88 qhm~~nv 94 (268)
+++...+
T Consensus 109 ~~~V~~L 115 (126)
T PF07889_consen 109 QQMVEGL 115 (126)
T ss_pred HHHHHHH
Confidence 7776544
No 51
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=24.26 E-value=3.3e+02 Score=24.82 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=26.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 035762 38 TVADLSAIDAAVKAVELQVQAIKSRVREETEAIP 71 (268)
Q Consensus 38 ~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~ 71 (268)
.+.+|..|.+=|..+|.||.-+++.|+.--..|.
T Consensus 158 ~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~ 191 (195)
T PF12761_consen 158 SGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQ 191 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888899999999999999999988655444433
No 52
>PHA03386 P10 fibrous body protein; Provisional
Probab=23.67 E-value=4.1e+02 Score=21.71 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=34.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcCCCC-Cccc
Q 035762 40 ADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSS-LSQT 101 (268)
Q Consensus 40 ~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~nvP~~-lP~~ 101 (268)
.++.++|.-+.++-.+|...+.- ..+|-.+-+.+-.-..++..+.+-+-.. +|..
T Consensus 12 ~dIkavd~KVdaLQ~qV~dv~~n-------~~~LDa~~~qL~~l~tkV~~Iq~iLn~d~iPd~ 67 (94)
T PHA03386 12 DAVQEVDTKVDALQTQLNGLEED-------SQPLDGLPAQLTELDTKVSDIQSILTGDEVPDP 67 (94)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc-------chhhhhHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 36778888888888888877765 5556665555555445555554444333 5554
No 53
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=23.35 E-value=1.1e+03 Score=26.53 Aligned_cols=13 Identities=38% Similarity=0.526 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhc
Q 035762 21 IADLQELVIARNM 33 (268)
Q Consensus 21 I~~lk~l~~lR~~ 33 (268)
+|-||.+++.||.
T Consensus 405 LSILQhlllirnD 417 (1102)
T KOG1924|consen 405 LSILQHLLLIRND 417 (1102)
T ss_pred HHHHHHHHHHhhh
Confidence 6778999999984
No 54
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.24 E-value=3.8e+02 Score=27.54 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=41.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh
Q 035762 39 VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSS 92 (268)
Q Consensus 39 ~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~ 92 (268)
--++..+.+.+..++.++..+=+.|..|..|-+.+.+....+.....++.....
T Consensus 270 ~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~ 323 (560)
T PF06160_consen 270 NLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNK 323 (560)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 457778899999999999999999999999998888766666555444443333
No 55
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=22.54 E-value=1.7e+02 Score=20.54 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhh
Q 035762 21 IADLQELVIARN 32 (268)
Q Consensus 21 I~~lk~l~~lR~ 32 (268)
+.+|++++.++.
T Consensus 17 L~eI~~~l~l~~ 28 (65)
T PF09278_consen 17 LEEIRELLELYD 28 (65)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhccC
Confidence 456677775543
No 56
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=22.29 E-value=3.3e+02 Score=29.03 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=11.9
Q ss_pred hHHHHHHhhchhhhhcc
Q 035762 240 AILTVLRHLGRISETRI 256 (268)
Q Consensus 240 ~il~iLRHl~Rl~E~R~ 256 (268)
+=|.||-||-|---+|.
T Consensus 225 GELAILynctRtAsV~a 241 (732)
T KOG0614|consen 225 GELAILYNCTRTASVRA 241 (732)
T ss_pred hHHHHHhCCcchhhhhh
Confidence 34599999988655543
No 57
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=22.15 E-value=4.4e+02 Score=22.80 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhh
Q 035762 9 SLDSLISSFNTRIADLQELVIARN 32 (268)
Q Consensus 9 ~Le~l~s~~n~rI~~lk~l~~lR~ 32 (268)
+|++-++++..-|+.|+..+..-.
T Consensus 1 sL~~cV~SL~~S~~lL~~Si~~L~ 24 (153)
T PF08287_consen 1 SLSNCVSSLRSSVQLLQSSIETLD 24 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888877655
No 58
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=21.48 E-value=5.8e+02 Score=24.89 Aligned_cols=60 Identities=17% Similarity=0.290 Sum_probs=46.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 035762 39 VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSL 98 (268)
Q Consensus 39 ~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~nvP~~l 98 (268)
.+-|+-...-.+.||-++.+-.+.|++=+-++.+++-=....+-|.+++.||..|--..+
T Consensus 150 sQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv 209 (305)
T PF14915_consen 150 SQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKV 209 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345666677788899999999999999888998888666667888889999977654333
No 59
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=21.36 E-value=4.2e+02 Score=25.41 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=11.8
Q ss_pred CCCCccccChHHhhh----hhHHhhhh
Q 035762 143 GSPPLWYITSDELDS----LSSYMRGR 165 (268)
Q Consensus 143 ~i~~~~~IT~eEF~s----iP~YmrGR 165 (268)
..+|+.|=|. |||+ ||-=++||
T Consensus 175 t~rCRtYGti-~fnG~~l~iPMDi~GR 200 (271)
T PF05549_consen 175 TARCRTYGTI-EFNGSSLRIPMDIRGR 200 (271)
T ss_pred CcccccceeE-EECCEeeeccccccCC
Confidence 3456666554 5665 34444555
No 60
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.20 E-value=3.8e+02 Score=22.87 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 035762 41 DLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASL 81 (268)
Q Consensus 41 ~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~ 81 (268)
++...+..++.++.+++++++.+++....+..+++......
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 67777888888888888888777776666666655444333
No 61
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=20.98 E-value=96 Score=24.34 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 035762 49 VKAVELQVQAIKSRVREETEA 69 (268)
Q Consensus 49 L~~lE~qv~~~~~~lqeE~~a 69 (268)
-.++|.+|..++.+|+.|...
T Consensus 10 r~~LeqeV~~Lq~~L~~E~~~ 30 (88)
T PF14389_consen 10 RSALEQEVAELQKQLQEEQDL 30 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999998888765
No 62
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=20.52 E-value=2.8e+02 Score=21.98 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=38.9
Q ss_pred HHhhhhhHHhhhhcCH--HHHHHHHHHHHHHHHHhhhhhccchhhhcH---HHHHHHHHH
Q 035762 153 DELDSLSSYMRGRLTL--EKVNAAVNDMATYAEANAHLISAPKKKLAG---NLWERALEL 207 (268)
Q Consensus 153 eEF~siP~YmrGRLTl--eqvN~~i~ein~~~~~Ky~il~~pkk~l~~---~~~~r~~el 207 (268)
+-|.++.+|+.|=++- ..++ .++.||.....||.=+..--..++. .++.++.+|
T Consensus 3 ~~f~~~~~~v~~el~~t~~d~~-LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l 61 (99)
T PF10046_consen 3 RMFSKVSKYVESELEATNEDYN-LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEEL 61 (99)
T ss_pred hHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999998763 3333 7889999999999866665555544 455555555
No 63
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=20.49 E-value=6.4e+02 Score=22.79 Aligned_cols=26 Identities=15% Similarity=0.449 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035762 44 AIDAAVKAVELQVQAIKSRVREETEA 69 (268)
Q Consensus 44 ~l~~~L~~lE~qv~~~~~~lqeE~~a 69 (268)
.+...+..|...|..++..+++|...
T Consensus 89 ~~~~~l~~L~~ri~~L~~~i~ee~~~ 114 (247)
T PF06705_consen 89 QLQSRLDSLNDRIEALEEEIQEEKEE 114 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 64
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=20.46 E-value=1.4e+02 Score=26.25 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=21.2
Q ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHhh
Q 035762 7 GSSLDSLI-SSFNTRIADLQELVIARN 32 (268)
Q Consensus 7 ~~~Le~l~-s~~n~rI~~lk~l~~lR~ 32 (268)
..+|+|.. .++=.+|-+|++|+.+|.
T Consensus 94 f~sm~DF~Pd~Ia~qVp~L~~LlelR~ 120 (159)
T TIGR03358 94 FESMDDFSPDAVAKQVPELKKLLEARE 120 (159)
T ss_pred cCccccCCHHHHHHHhHHHHHHHHHHH
Confidence 46677776 778889999999999997
No 65
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=20.20 E-value=3e+02 Score=23.61 Aligned_cols=15 Identities=7% Similarity=-0.082 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 035762 73 AKKLIDASLRQQKIL 87 (268)
Q Consensus 73 lk~L~~~~~~q~~~l 87 (268)
+.++-.+.+...+.|
T Consensus 66 L~~rkk~~e~~~~~L 80 (162)
T PF05565_consen 66 LQERKKSIENRIDRL 80 (162)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444333333
No 66
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=20.14 E-value=7.3e+02 Score=25.58 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------CCCCC-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHH-
Q 035762 10 LDSLISSFNTRIADLQELVIARNM-------YPVST-------VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAK- 74 (268)
Q Consensus 10 Le~l~s~~n~rI~~lk~l~~lR~~-------~p~~~-------~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk- 74 (268)
+..|.-|+..+..+|+++..+.|. .|+.. .+.+.+|..-+.+|++|+..|+-.+..=-.++-+++
T Consensus 247 ~~~LsE~~~k~~q~Le~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d 326 (593)
T KOG4807|consen 247 QNRLSEEIEKKWQELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQED 326 (593)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhh
Q ss_pred ------------------HHHHHHHHHHHHHH
Q 035762 75 ------------------KLIDASLRQQKILQ 88 (268)
Q Consensus 75 ------------------~L~~~~~~q~~~lq 88 (268)
++.+.-++-.++||
T Consensus 327 ~~~~~~~~~qatCERgfAaMEetHQkkiEdLQ 358 (593)
T KOG4807|consen 327 GHIPPGYISQATCERGFAAMEETHQKKIEDLQ 358 (593)
T ss_pred ccCCccHHHHHHHHhhHHHHHHHHHHHHHHHH
No 67
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.08 E-value=5.2e+02 Score=21.57 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=41.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhh
Q 035762 39 VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMS 91 (268)
Q Consensus 39 ~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~ 91 (268)
..++.+...-+..++.+++..+.+.+.=+.-++.=-+-++-++-+..++..|.
T Consensus 60 ~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 60 NEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 45556666777788888888888888888888877788888888888888774
Done!