Query 035762
Match_columns 268
No_of_seqs 80 out of 82
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:05:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lyc_A Spindle and kinetochore 100.0 9.5E-49 3.2E-53 325.7 9.7 122 143-264 3-127 (130)
2 4aj5_A SKA1, spindle and kinet 99.9 7.5E-24 2.6E-28 165.6 5.4 82 6-94 2-91 (91)
3 1deq_A Fibrinogen (alpha chain 64.0 27 0.00092 33.5 8.7 82 10-94 58-157 (390)
4 3hnw_A Uncharacterized protein 52.4 46 0.0016 27.1 7.3 20 8-27 28-47 (138)
5 3k29_A Putative uncharacterize 51.6 62 0.0021 27.7 8.1 79 9-87 45-125 (169)
6 3tnu_B Keratin, type II cytosk 50.4 41 0.0014 26.6 6.5 50 11-60 7-56 (129)
7 1m1j_A Fibrinogen alpha subuni 48.6 86 0.0029 30.8 9.5 80 7-86 49-150 (491)
8 3nmd_A CGMP dependent protein 48.5 33 0.0011 25.6 5.1 35 21-62 21-55 (72)
9 1hjb_A Ccaat/enhancer binding 47.4 37 0.0013 25.9 5.5 31 70-100 52-82 (87)
10 3tnu_A Keratin, type I cytoske 47.4 44 0.0015 26.6 6.3 51 9-59 7-57 (131)
11 3thf_A Protein shroom; coiled- 46.9 73 0.0025 27.7 7.9 85 10-94 17-127 (190)
12 3ghg_A Fibrinogen alpha chain; 45.4 45 0.0015 33.3 7.0 48 44-94 107-154 (562)
13 3okq_A BUD site selection prot 44.6 1.2E+02 0.0042 25.1 8.6 85 10-94 19-126 (141)
14 3trt_A Vimentin; cytoskeleton, 42.4 30 0.001 24.8 4.2 13 5-17 2-14 (77)
15 1wt6_A Myotonin-protein kinase 42.2 65 0.0022 24.5 6.0 29 40-70 8-36 (81)
16 1hs7_A Syntaxin VAM3; UP-and-D 37.8 1.1E+02 0.0039 23.5 7.0 53 7-64 5-58 (97)
17 1g6u_A Domain swapped dimer; d 36.0 39 0.0013 22.8 3.5 29 36-64 16-44 (48)
18 2qyw_A Vesicle transport throu 35.9 70 0.0024 24.5 5.5 73 9-88 23-102 (102)
19 3gpv_A Transcriptional regulat 34.1 57 0.0019 26.2 5.0 12 21-32 60-71 (148)
20 3e9v_A Protein BTG2; B-cell tr 31.3 47 0.0016 26.7 4.0 30 158-187 13-44 (120)
21 3efg_A Protein SLYX homolog; x 30.9 1.1E+02 0.0038 22.6 5.7 20 44-63 11-30 (78)
22 2z15_A Protein TOB1; human TOB 30.0 39 0.0013 27.5 3.3 31 157-187 18-48 (130)
23 1nkp_B MAX protein, MYC proto- 26.3 89 0.0031 22.6 4.5 14 15-28 15-28 (83)
24 3e35_A Uncharacterized protein 25.9 1E+02 0.0034 28.5 5.7 39 49-87 236-275 (325)
25 1gu4_A CAAT/enhancer binding p 25.0 94 0.0032 23.1 4.4 27 70-96 52-78 (78)
26 2w6b_A RHO guanine nucleotide 24.8 1.9E+02 0.0064 20.5 5.8 41 40-80 10-50 (56)
27 3gp4_A Transcriptional regulat 24.3 2.7E+02 0.0091 22.1 7.6 9 24-32 49-57 (142)
28 1vcs_A Vesicle transport throu 23.9 1.1E+02 0.0037 23.4 4.7 44 10-59 14-64 (102)
29 3onj_A T-snare VTI1; helix, HA 23.7 2.3E+02 0.008 21.2 8.4 42 39-82 40-83 (97)
30 3opc_A Uncharacterized protein 22.2 2.9E+02 0.0098 21.7 9.0 48 8-55 4-53 (154)
31 2k6x_A Sigma-A, RNA polymerase 22.1 27 0.00091 25.0 0.8 15 162-176 20-34 (72)
32 3gpv_A Transcriptional regulat 22.1 3E+02 0.01 21.8 8.2 11 21-31 76-86 (148)
33 2c5k_T Syntaxin TLG1, T-snare 22.0 2.6E+02 0.0089 21.1 10.3 78 9-88 7-88 (95)
34 3ghg_C Fibrinogen gamma chain; 21.7 4.7E+02 0.016 25.0 9.7 22 9-30 42-63 (411)
35 3oja_B Anopheles plasmodium-re 21.7 5E+02 0.017 24.3 10.8 12 85-96 572-583 (597)
36 2wam_A RV2714, conserved hypot 21.2 1.5E+02 0.005 27.7 5.9 42 49-90 271-312 (351)
37 1am9_A Srebp-1A, protein (ster 20.1 2.6E+02 0.0088 20.3 6.4 15 15-29 19-33 (82)
No 1
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=100.00 E-value=9.5e-49 Score=325.73 Aligned_cols=122 Identities=25% Similarity=0.348 Sum_probs=114.4
Q ss_pred CCCCccccChHHhhhhhHHhhhhcCHHHHHHHHHHHHHHHHHhhhhhccchhhhcHHHHHHHHHHHh--HhhhhccCCee
Q 035762 143 GSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRD--IATVEAVKGKH 220 (268)
Q Consensus 143 ~i~~~~~IT~eEF~siP~YmrGRLTleqvN~~i~ein~~~~~Ky~il~~pkk~l~~~~~~r~~el~~--~~~~k~~kg~~ 220 (268)
-|+++.|||+|||++||+|||||||||+||++|++||+++++||+||++|+++|+...|.++..+++ .+++++++|+|
T Consensus 3 ~i~~~~~IT~eEF~sIPkYmrGRlTle~lN~~i~~in~~~~~KY~il~~p~k~l~~~~~~~~~~~k~~e~~~~k~~~g~~ 82 (130)
T 2lyc_A 3 DIRIVPQITDEEFKTIPKYQLGRLTLEMMNEIVSKMDDFLMKKSKILGKTNKQLTRSDREVLDNWRELEMKARKRLPTTL 82 (130)
T ss_dssp SCCSSCCCCHHHHTTSCHHHHSSCCHHHHHHHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHHTCSCCSCSC
T ss_pred CCceeeeecHHHHhccCHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCHHHHHHHHHHHHHHHhhcccCCCeE
Confidence 4678889999999999999999999999999999999999999999999999999988888888876 34567788999
Q ss_pred eEecCccC-CCCccccchhhhHHHHHHhhchhhhhccCCeEEEEe
Q 035762 221 FFLENDVK-GPSLKLDNTGKAILTVLRHLGRISETRIGHHRVIIL 264 (268)
Q Consensus 221 F~~e~Dik-~~~lKlDkt~k~il~iLRHl~Rl~E~R~g~~~~y~l 264 (268)
||+|+||+ ++++|+|++++++|+||||||||+|+||||+|+||=
T Consensus 83 F~~e~Dik~~~~~K~dkt~~~~L~iLRHl~RL~E~R~gg~~rYv~ 127 (130)
T 2lyc_A 83 FFIETDIRPMLQDRLRPSFAKAIPCLRHIRRIREERCGPLTFYYP 127 (130)
T ss_dssp CEEHHHHGGGSCTTSCSCHHHHHHHHHTTTSCCCEECSSCEEECS
T ss_pred EeeHHHHHhhhccccchhhhHHHHHHHhhchHHHhccCCeeEEcc
Confidence 99999999 799999999999999999999999999999999983
No 2
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=99.89 E-value=7.5e-24 Score=165.59 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=69.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhc--CCCCC------ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 035762 6 AGSSLDSLISSFNTRIADLQELVIARNM--YPVST------VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLI 77 (268)
Q Consensus 6 ~~~~Le~l~s~~n~rI~~lk~l~~lR~~--~p~~~------~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~ 77 (268)
++|+|||||+|||+||++||++++||++ +|+++ |+|+++|+++|++||.+|++|++. +++||+|+
T Consensus 2 ~~s~LEdlc~hineKIs~ikk~L~Lr~~gqdP~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~-------~~sLKEL~ 74 (91)
T 4aj5_A 2 ASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEIQYQEQT-------NNSLKELC 74 (91)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 4789999999999999999999999999 99998 999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhhhcC
Q 035762 78 DASLRQQKILQNMSSYA 94 (268)
Q Consensus 78 ~~~~~q~~~lqhm~~nv 94 (268)
+++++++++++||++||
T Consensus 75 ~s~e~d~kdv~HLkeni 91 (91)
T 4aj5_A 75 ESLEEDYKDIEHLKENV 91 (91)
T ss_dssp HHHHHCC----------
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999996
No 3
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=64.00 E-value=27 Score=33.49 Aligned_cols=82 Identities=11% Similarity=0.206 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh------------cCCCC-----CccchH-HHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 035762 10 LDSLISSFNTRIADLQELVIARN------------MYPVS-----TVADLS-AIDAAVKAVELQVQAIKSRVREETEAIP 71 (268)
Q Consensus 10 Le~l~s~~n~rI~~lk~l~~lR~------------~~p~~-----~~~~l~-~l~~~L~~lE~qv~~~~~~lqeE~~al~ 71 (268)
|+..-.-|..||..|+..|.--. +.-.+ +..+.. .+++..+.||.++.+++..|..-+..|.
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir 137 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRIN 137 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444668888888887764321 11000 122222 6788888999999999999998877554
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcC
Q 035762 72 KAKKLIDASLRQQKILQNMSSYA 94 (268)
Q Consensus 72 ~lk~L~~~~~~q~~~lqhm~~nv 94 (268)
.|+ .-++.|..+.|.|-.-|
T Consensus 138 ~Lq---~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 138 LLQ---KNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHH---HHHHHHHHHHHHHHHHH
Confidence 444 44455555555555555
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.42 E-value=46 Score=27.09 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 035762 8 SSLDSLISSFNTRIADLQEL 27 (268)
Q Consensus 8 ~~Le~l~s~~n~rI~~lk~l 27 (268)
.-|-.+..++|+||.+|+..
T Consensus 28 e~L~~vA~~vd~km~ei~~~ 47 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFNKE 47 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34788899999999999743
No 5
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=51.58 E-value=62 Score=27.67 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 035762 9 SLDSLISSFNTRIADLQELVIARNMYPVST--VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKI 86 (268)
Q Consensus 9 ~Le~l~s~~n~rI~~lk~l~~lR~~~p~~~--~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~ 86 (268)
.+|.+-.|--++|+.|++.+.--...|.+. ..=+..|.+-+..+|..|+.++..|..|-.++...+.-.....++.++
T Consensus 45 ~r~k~~~h~~~k~~qlre~~d~gtt~~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eK 124 (169)
T 3k29_A 45 ERDKVKNHYMQKIRQLREQLDDGTTSDAILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEK 124 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888887765432111111 122335888888999999999999999988888888765556666655
Q ss_pred H
Q 035762 87 L 87 (268)
Q Consensus 87 l 87 (268)
+
T Consensus 125 f 125 (169)
T 3k29_A 125 T 125 (169)
T ss_dssp H
T ss_pred H
Confidence 5
No 6
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.42 E-value=41 Score=26.61 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHH
Q 035762 11 DSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIK 60 (268)
Q Consensus 11 e~l~s~~n~rI~~lk~l~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~~ 60 (268)
.++=+.|+.|+.+|+..+.-.+.+-...-.++..+...+..|+.+++.++
T Consensus 7 ~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 7 TEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445777788877766644332222223445555555555555544443
No 7
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=48.57 E-value=86 Score=30.84 Aligned_cols=80 Identities=16% Similarity=0.332 Sum_probs=51.1
Q ss_pred CCCHHHHH----HHHHHHHHHHHHHHHHhh-cCCCC-----------C-----ccchH-HHHHHHHHHHHHHHHHHHHHH
Q 035762 7 GSSLDSLI----SSFNTRIADLQELVIARN-MYPVS-----------T-----VADLS-AIDAAVKAVELQVQAIKSRVR 64 (268)
Q Consensus 7 ~~~Le~l~----s~~n~rI~~lk~l~~lR~-~~p~~-----------~-----~~~l~-~l~~~L~~lE~qv~~~~~~lq 64 (268)
++.|-+++ --|..||..|+..|-=-. ..-.+ + ..+.. .+++..+.||.++.+++..+.
T Consensus 49 GCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd 128 (491)
T 1m1j_A 49 GCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVA 128 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55565555 468899999988764221 01111 0 11111 677888899999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHHHH
Q 035762 65 EETEAIPKAKKLIDASLRQQKI 86 (268)
Q Consensus 65 eE~~al~~lk~L~~~~~~q~~~ 86 (268)
+-+..|.-||..++......++
T Consensus 129 ~qi~~IrvLq~~l~~q~skIQR 150 (491)
T 1m1j_A 129 TQVNRIKALQNSIQEQVVEMKR 150 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9997776666655544433333
No 8
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.55 E-value=33 Score=25.56 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHH
Q 035762 21 IADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSR 62 (268)
Q Consensus 21 I~~lk~l~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~~~~ 62 (268)
|.+||.++..+. .+|..-++.+..+|.+++..++.
T Consensus 21 i~eLq~~L~~K~-------eELr~kd~~I~eLEk~L~ekd~e 55 (72)
T 3nmd_A 21 LRDLQYALQEKI-------EELRQRDALIDELELELDQKDEL 55 (72)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665553 44555666666666665554444
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=47.40 E-value=37 Score=25.86 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 035762 70 IPKAKKLIDASLRQQKILQNMSSYASSSLSQ 100 (268)
Q Consensus 70 l~~lk~L~~~~~~q~~~lqhm~~nvP~~lP~ 100 (268)
...|+.-|+.+..+...|..|...+|.++-.
T Consensus 52 N~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~ 82 (87)
T 1hjb_A 52 NERLQKKVEQLSRELSTLRNLFKQLPEPLLA 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcHHHhc
Confidence 6678888899999999999999999997653
No 10
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.36 E-value=44 Score=26.56 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHH
Q 035762 9 SLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAI 59 (268)
Q Consensus 9 ~Le~l~s~~n~rI~~lk~l~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~ 59 (268)
+..++=+.|+.|+.+|+..+.-...+-...-.++..+...+..|+.+++.+
T Consensus 7 nr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 7 NRKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQ 57 (131)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555678888888887665443222222344445555555555544444
No 11
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=46.95 E-value=73 Score=27.69 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--------------------cCCCC------CccchHHHHHHHHHHHHHHHHHHHHH
Q 035762 10 LDSLISSFNTRIADLQELVIARN--------------------MYPVS------TVADLSAIDAAVKAVELQVQAIKSRV 63 (268)
Q Consensus 10 Le~l~s~~n~rI~~lk~l~~lR~--------------------~~p~~------~~~~l~~l~~~L~~lE~qv~~~~~~l 63 (268)
.+.|+.+++.+|..|++--..=. |.|.- -+.||.-|-.+|-.+=.++...+..|
T Consensus 17 k~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL 96 (190)
T 3thf_A 17 MDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSL 96 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46799999999998876432110 12221 17777767777777888888888888
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHhhhcC
Q 035762 64 REETEAIPKAKKLIDASLRQQKILQNMSSYA 94 (268)
Q Consensus 64 qeE~~al~~lk~L~~~~~~q~~~lqhm~~nv 94 (268)
...-.....|.+=...+..|+++++.+++|+
T Consensus 97 ~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~l 127 (190)
T 3thf_A 97 ETRQQERGALESKRDLLYEQMEEAQRLKSDI 127 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555566666677889999999999998
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.39 E-value=45 Score=33.34 Aligned_cols=48 Identities=10% Similarity=0.143 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcC
Q 035762 44 AIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYA 94 (268)
Q Consensus 44 ~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~nv 94 (268)
.+++.-..||.++++++..|+..+. .++.|...++.|..++|.|-.-|
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQls---nIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQ---HIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555899999999999999984 45555555666666666655444
No 13
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=44.60 E-value=1.2e+02 Score=25.13 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHhhcCCCCC-----ccchHHHHHHHHHHHHHHHHHH-----------HHHHHH
Q 035762 10 LDSLISSFNTRIAD-------LQELVIARNMYPVST-----VADLSAIDAAVKAVELQVQAIK-----------SRVREE 66 (268)
Q Consensus 10 Le~l~s~~n~rI~~-------lk~l~~lR~~~p~~~-----~~~l~~l~~~L~~lE~qv~~~~-----------~~lqeE 66 (268)
|++-|-.+=.||.. ||+=|.-|.+-|.-+ ..||..+...|+.|+.-+...+ +.+=+|
T Consensus 19 L~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceE 98 (141)
T 3okq_A 19 LGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEE 98 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 45555444445544 445555666666554 4445555555555554443322 111122
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHhhhcC
Q 035762 67 TEAIPKAKKLIDASLRQQKILQNMSSYA 94 (268)
Q Consensus 67 ~~al~~lk~L~~~~~~q~~~lqhm~~nv 94 (268)
-.-+..-.+|+..++.+++++...-.+|
T Consensus 99 Qqfl~~QedL~~DL~eDL~ka~etf~lV 126 (141)
T 3okq_A 99 QQFLTLQEELILDLKEDLGKALETFDLI 126 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234444467777777777777665554
No 14
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=42.38 E-value=30 Score=24.79 Aligned_cols=13 Identities=0% Similarity=0.031 Sum_probs=6.2
Q ss_pred CCCCCHHHHHHHH
Q 035762 5 KAGSSLDSLISSF 17 (268)
Q Consensus 5 ~~~~~Le~l~s~~ 17 (268)
+++.||+.++.-+
T Consensus 2 ~~~~DL~~il~ei 14 (77)
T 3trt_A 2 GSKPDCTAAMRDV 14 (77)
T ss_dssp -CCCCCHHHHHHH
T ss_pred CCcccHHHHHHHH
Confidence 3455666555433
No 15
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.18 E-value=65 Score=24.48 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035762 40 ADLSAIDAAVKAVELQVQAIKSRVREETEAI 70 (268)
Q Consensus 40 ~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al 70 (268)
.|+..+ ++.++||.+|+. ++.|++|++..
T Consensus 8 ~~~~~l-eLQSALeaEIqA-KQ~i~EELs~v 36 (81)
T 1wt6_A 8 AEVTLR-ELQEALEEEVLT-RQSLSREMEAI 36 (81)
T ss_dssp -CCCHH-HHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHH-HHHHHHHHHHH
Confidence 345444 888899999988 56678888654
No 16
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=37.81 E-value=1.1e+02 Score=23.54 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHH-HHHHHHHHHHHHHH
Q 035762 7 GSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVK-AVELQVQAIKSRVR 64 (268)
Q Consensus 7 ~~~Le~l~s~~n~rI~~lk~l~~lR~~~p~~~~~~l~~l~~~L~-~lE~qv~~~~~~lq 64 (268)
..+++.|+..+...|..|++++..=- .-.|=..|-..|. .+...+..+...+.
T Consensus 5 ~~d~~~li~t~s~niq~l~k~~~qlG-----TkrD~~~LR~~l~~~l~~~~~~L~k~~~ 58 (97)
T 1hs7_A 5 TKELSNLIETFAEQSRVLEKECTKIG-----SKRDSKELRYKIETELIPNCTSVRDKIE 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-----SSSCCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhC-----CCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999998888776533 1223333444444 44444444444433
No 17
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.03 E-value=39 Score=22.77 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=22.9
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 035762 36 VSTVADLSAIDAAVKAVELQVQAIKSRVR 64 (268)
Q Consensus 36 ~~~~~~l~~l~~~L~~lE~qv~~~~~~lq 64 (268)
.....++.+++.-|.++|..+..+++.||
T Consensus 16 gfspeelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888889988888887754
No 18
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=35.90 E-value=70 Score=24.49 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHH-------HHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 035762 9 SLDSLISSFNTRIADLQEL-------VIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASL 81 (268)
Q Consensus 9 ~Le~l~s~~n~rI~~lk~l-------~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~ 81 (268)
++..++..++.+|+.|..+ -.+|. --..|...+++|..||.+++.+-...+..+.+ +++..-..+.
T Consensus 23 df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~-----ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~--klr~Yk~dL~ 95 (102)
T 2qyw_A 23 IFRGLLEDLQGVPERLLGTAGTEEKKKLVRD-----FDEKQQEANETLAEMEEELRYAPLTFRNPMMS--KLRNYRKDLA 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHHHHH
Q ss_pred HHHHHHH
Q 035762 82 RQQKILQ 88 (268)
Q Consensus 82 ~q~~~lq 88 (268)
.=..+++
T Consensus 96 ~lk~elk 102 (102)
T 2qyw_A 96 KLHREVR 102 (102)
T ss_dssp HHHHHHC
T ss_pred HHHhhcC
No 19
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=34.11 E-value=57 Score=26.19 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhh
Q 035762 21 IADLQELVIARN 32 (268)
Q Consensus 21 I~~lk~l~~lR~ 32 (268)
|..|+.+..+|.
T Consensus 60 l~~l~~I~~lr~ 71 (148)
T 3gpv_A 60 LKYLEMILCLKN 71 (148)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 344444455555
No 20
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=31.26 E-value=47 Score=26.66 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=25.1
Q ss_pred hhHHhhhh--cCHHHHHHHHHHHHHHHHHhhh
Q 035762 158 LSSYMRGR--LTLEKVNAAVNDMATYAEANAH 187 (268)
Q Consensus 158 iP~YmrGR--LTleqvN~~i~ein~~~~~Ky~ 187 (268)
|-+|++++ |.-++++.+-+++..++..+|+
T Consensus 13 l~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~ 44 (120)
T 3e9v_A 13 LSSLLRTRGCVSEQRLKVFSGALQEALTEHYK 44 (120)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 55777777 8999999999998888888887
No 21
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=30.89 E-value=1.1e+02 Score=22.56 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035762 44 AIDAAVKAVELQVQAIKSRV 63 (268)
Q Consensus 44 ~l~~~L~~lE~qv~~~~~~l 63 (268)
.++.-+..||..+.+|++.|
T Consensus 11 ~le~Ri~~LE~klAfqE~tI 30 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQAL 30 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677888999999999993
No 22
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=30.03 E-value=39 Score=27.51 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=27.3
Q ss_pred hhhHHhhhhcCHHHHHHHHHHHHHHHHHhhh
Q 035762 157 SLSSYMRGRLTLEKVNAAVNDMATYAEANAH 187 (268)
Q Consensus 157 siP~YmrGRLTleqvN~~i~ein~~~~~Ky~ 187 (268)
=|-+|+++|+.-++|+.+-+++..++..+|+
T Consensus 18 Fl~~~L~~klp~~~v~~F~~~L~~~L~~~y~ 48 (130)
T 2z15_A 18 FIISYLYNKLPRRRVNIFGEELERLLKKKYE 48 (130)
T ss_dssp HHHTTTTTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999986
No 23
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.27 E-value=89 Score=22.65 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 035762 15 SSFNTRIADLQELV 28 (268)
Q Consensus 15 s~~n~rI~~lk~l~ 28 (268)
..+|+.+..|+.+|
T Consensus 15 ~~in~~f~~Lr~lv 28 (83)
T 1nkp_B 15 DHIKDSFHSLRDSV 28 (83)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHC
Confidence 35666666665554
No 24
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=25.94 E-value=1e+02 Score=28.49 Aligned_cols=39 Identities=5% Similarity=0.088 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHH
Q 035762 49 VKAVELQVQAIKSRVREETEA-IPKAKKLIDASLRQQKIL 87 (268)
Q Consensus 49 L~~lE~qv~~~~~~lqeE~~a-l~~lk~L~~~~~~q~~~l 87 (268)
+..|+.+.+.++..+++..+. -+.+.+++.++++|+...
T Consensus 236 ~~~L~e~Ae~~e~~i~el~~~~~~E~~~~V~~LE~~yD~~ 275 (325)
T 3e35_A 236 AHSLRTDAHRTQTEIDRQIQEGDEELIALVQGLEHQYDAA 275 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh
Confidence 789999999999999999999 999999999999998764
No 25
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.96 E-value=94 Score=23.09 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcCCC
Q 035762 70 IPKAKKLIDASLRQQKILQNMSSYASS 96 (268)
Q Consensus 70 l~~lk~L~~~~~~q~~~lqhm~~nvP~ 96 (268)
...|+.-|+.+..+...|..|..++|.
T Consensus 52 N~~L~~~v~~L~~E~~~Lr~ll~q~p~ 78 (78)
T 1gu4_A 52 NERLQKKVEQLSRELSTLRNLFKQLPE 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 667888888898999999888888874
No 26
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.84 E-value=1.9e+02 Score=20.50 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=29.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 035762 40 ADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDAS 80 (268)
Q Consensus 40 ~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~ 80 (268)
+.+-+|-.-++.|-.+...++.+|.+|-.|...|.+++-.+
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777788888888888877777776655
No 27
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=24.29 E-value=2.7e+02 Score=22.06 Aligned_cols=9 Identities=11% Similarity=-0.130 Sum_probs=3.6
Q ss_pred HHHHHHHhh
Q 035762 24 LQELVIARN 32 (268)
Q Consensus 24 lk~l~~lR~ 32 (268)
|+.+..+|.
T Consensus 49 l~~I~~lr~ 57 (142)
T 3gp4_A 49 ILFTRQMRR 57 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333334444
No 28
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=23.89 E-value=1.1e+02 Score=23.37 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCC-------ccchHHHHHHHHHHHHHHHHH
Q 035762 10 LDSLISSFNTRIADLQELVIARNMYPVST-------VADLSAIDAAVKAVELQVQAI 59 (268)
Q Consensus 10 Le~l~s~~n~rI~~lk~l~~lR~~~p~~~-------~~~l~~l~~~L~~lE~qv~~~ 59 (268)
+..++..++.+|+.|.. ....-+ -.+|...+++|..||.+++.+
T Consensus 14 f~~l~~~i~~kl~~i~~------~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~ 64 (102)
T 1vcs_A 14 FAVLTAEITSKIARVPR------LPPDEKKQMVANVEKQLEEARELLEQMDLEVREI 64 (102)
T ss_dssp HHHHHHHHHHHHHHGGG------SCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhc------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44566667777766532 111111 234445566667777766654
No 29
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=23.71 E-value=2.3e+02 Score=21.21 Aligned_cols=42 Identities=7% Similarity=0.061 Sum_probs=24.8
Q ss_pred ccchHHHHHHHHHHHHHHHHH--HHHHHHHHhhchhHHHHHHHHHH
Q 035762 39 VADLSAIDAAVKAVELQVQAI--KSRVREETEAIPKAKKLIDASLR 82 (268)
Q Consensus 39 ~~~l~~l~~~L~~lE~qv~~~--~~~lqeE~~al~~lk~L~~~~~~ 82 (268)
-..+...+++|..||.+++.+ -...+..+ ..+++..-..+..
T Consensus 40 e~~ldEA~ell~qMelE~~~~~~p~~~R~~~--~~klr~Yk~dl~~ 83 (97)
T 3onj_A 40 EQQQDELFDLLDQMDVEVNNSIGDASERATY--KAKLREWKKTIQS 83 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHHHHHHH
Confidence 344557788889999998887 33333333 2355554444433
No 30
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=22.23 E-value=2.9e+02 Score=21.72 Aligned_cols=48 Identities=19% Similarity=0.068 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCc-cchHHHHHHHHHHHHH
Q 035762 8 SSLDSLISSFNTRIADLQELVIARNM-YPVSTV-ADLSAIDAAVKAVELQ 55 (268)
Q Consensus 8 ~~Le~l~s~~n~rI~~lk~l~~lR~~-~p~~~~-~~l~~l~~~L~~lE~q 55 (268)
-+++.|...+...+..++.|+.+=.- .-.+.. .|+.+|+.+...-+..
T Consensus 4 m~~~~L~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~l 53 (154)
T 3opc_A 4 MNSAALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETL 53 (154)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 35688999999999988888776543 222223 4444454444433333
No 31
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=22.08 E-value=27 Score=25.05 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.1
Q ss_pred hhhhcCHHHHHHHHH
Q 035762 162 MRGRLTLEKVNAAVN 176 (268)
Q Consensus 162 mrGRLTleqvN~~i~ 176 (268)
-+|.|||++||.++.
T Consensus 20 ~~G~lTy~EI~d~l~ 34 (72)
T 2k6x_A 20 KKGYITYEDIDKAFP 34 (72)
T ss_dssp HHSSCBHHHHHHHCS
T ss_pred HcCCccHHHHHHhCc
Confidence 467899999998853
No 32
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.05 E-value=3e+02 Score=21.82 Aligned_cols=11 Identities=9% Similarity=0.238 Sum_probs=5.6
Q ss_pred HHHHHHHHHHh
Q 035762 21 IADLQELVIAR 31 (268)
Q Consensus 21 I~~lk~l~~lR 31 (268)
|.+|++++.+.
T Consensus 76 L~eIk~~l~~~ 86 (148)
T 3gpv_A 76 IQKIKQFIDWS 86 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 44555555544
No 33
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=21.96 E-value=2.6e+02 Score=21.13 Aligned_cols=78 Identities=12% Similarity=0.177 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH----HHhhchhHHHHHHHHHHHH
Q 035762 9 SLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVRE----ETEAIPKAKKLIDASLRQQ 84 (268)
Q Consensus 9 ~Le~l~s~~n~rI~~lk~l~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~~~~lqe----E~~al~~lk~L~~~~~~q~ 84 (268)
...++..-+-+.|..|+.++.-|+..|. ...-..+...+..+|..++++.+.+.- +...+..=|..+..+..+.
T Consensus 7 PF~~V~~D~~~ql~~l~~~~~~~~~~~~--~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i 84 (95)
T 2c5k_T 7 PFQQVVKDTKEQLNRINNYITRHNTAGD--DDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQL 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCC----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4567777888889999998777766433 244456777777777777777777666 5555555667777777776
Q ss_pred HHHH
Q 035762 85 KILQ 88 (268)
Q Consensus 85 ~~lq 88 (268)
+.++
T Consensus 85 ~~lk 88 (95)
T 2c5k_T 85 DALK 88 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 34
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.74 E-value=4.7e+02 Score=24.97 Aligned_cols=22 Identities=18% Similarity=0.528 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 035762 9 SLDSLISSFNTRIADLQELVIA 30 (268)
Q Consensus 9 ~Le~l~s~~n~rI~~lk~l~~l 30 (268)
+|+++...|...=++.++++..
T Consensus 42 ~L~~~l~~isn~Ts~~~~~v~~ 63 (411)
T 3ghg_C 42 SLEDILHQVENKTSEVKQLIKA 63 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHH
Confidence 4666666666666666665543
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.73 E-value=5e+02 Score=24.32 Aligned_cols=12 Identities=0% Similarity=0.160 Sum_probs=5.3
Q ss_pred HHHHHhhhcCCC
Q 035762 85 KILQNMSSYASS 96 (268)
Q Consensus 85 ~~lqhm~~nvP~ 96 (268)
++++++.+.++-
T Consensus 572 ~~~~~l~~~~~~ 583 (597)
T 3oja_B 572 QKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHhcC
Confidence 344555555443
No 36
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=21.22 E-value=1.5e+02 Score=27.71 Aligned_cols=42 Identities=12% Similarity=0.246 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHh
Q 035762 49 VKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNM 90 (268)
Q Consensus 49 L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm 90 (268)
+..|+.+.+.++..+++..+..+.+.+++.++++|+......
T Consensus 271 ~~~L~e~Ae~ie~~i~el~~~~~e~~~~V~~LE~qyD~~~~~ 312 (351)
T 2wam_A 271 LAVLAEAAAEVQAKIDEQVQASAEVAQVVAALERQYDAFIDA 312 (351)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhchhhhh
Confidence 357888889999999999999999999999999888765443
No 37
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=20.06 E-value=2.6e+02 Score=20.32 Aligned_cols=15 Identities=47% Similarity=0.811 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 035762 15 SSFNTRIADLQELVI 29 (268)
Q Consensus 15 s~~n~rI~~lk~l~~ 29 (268)
..||+++..|+.+|-
T Consensus 19 ~~in~~f~~L~~lvP 33 (82)
T 1am9_A 19 SSINDKIIELKDLVV 33 (82)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc
Confidence 458999999988884
Done!