Query 035762
Match_columns 268
No_of_seqs 80 out of 82
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 10:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035762.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035762hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2z15a1 d.370.1.1 (A:10-126) T 46.8 6.9 0.0005 29.6 3.3 30 158-187 12-41 (117)
2 d1q08a_ a.6.1.3 (A:) Transcrip 38.1 38 0.0027 23.6 6.1 12 21-32 19-30 (94)
3 d1r1ua_ a.4.5.5 (A:) Metal-sen 36.2 5.2 0.00038 28.5 1.0 26 242-267 52-77 (94)
4 d2p90a1 c.56.8.1 (A:6-274) Hyp 34.9 22 0.0016 29.0 5.0 37 50-86 227-263 (269)
5 d3e9va1 d.370.1.1 (A:9-128) NG 25.7 27 0.002 26.2 3.6 30 158-187 13-44 (120)
6 d1seta1 a.2.7.1 (A:1-110) Sery 25.1 1E+02 0.0075 21.4 9.1 40 19-60 9-48 (110)
7 d1q06a_ a.6.1.3 (A:) Transcrip 24.0 81 0.0059 22.3 6.0 16 80-95 98-113 (127)
8 d1p6oa_ c.97.1.2 (A:) Cytosine 23.6 23 0.0017 27.2 2.9 35 234-268 55-89 (156)
9 d1nkpa_ a.38.1.1 (A:) Myc prot 20.3 96 0.007 20.8 5.5 14 15-28 19-32 (88)
10 d2ivxa1 a.74.1.1 (A:7-149) Cyc 20.2 1.1E+02 0.0081 21.7 6.2 60 146-206 3-64 (143)
No 1
>d2z15a1 d.370.1.1 (A:10-126) TOB1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.79 E-value=6.9 Score=29.64 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=28.1
Q ss_pred hhHHhhhhcCHHHHHHHHHHHHHHHHHhhh
Q 035762 158 LSSYMRGRLTLEKVNAAVNDMATYAEANAH 187 (268)
Q Consensus 158 iP~YmrGRLTleqvN~~i~ein~~~~~Ky~ 187 (268)
|-+|++|||.-++|+.+-+++..++..||+
T Consensus 12 l~~~l~~kl~~~~~~~F~~~L~~~L~~~y~ 41 (117)
T d2z15a1 12 IISYLYNKLPRRRVNIFGEELERLLKKKYE 41 (117)
T ss_dssp HHTTTTTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999999999999998
No 2
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=38.06 E-value=38 Score=23.55 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhh
Q 035762 21 IADLQELVIARN 32 (268)
Q Consensus 21 I~~lk~l~~lR~ 32 (268)
+.+|++++.++.
T Consensus 19 L~EI~~ll~l~~ 30 (94)
T d1q08a_ 19 LESIRELLSIRI 30 (94)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 567888888875
No 3
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=36.25 E-value=5.2 Score=28.49 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.7
Q ss_pred HHHHHhhchhhhhccCCeEEEEeeCC
Q 035762 242 LTVLRHLGRISETRIGHHRVIILLKP 267 (268)
Q Consensus 242 l~iLRHl~Rl~E~R~g~~~~y~l~~~ 267 (268)
|.+|+.+|=++..|-|..++|-|..+
T Consensus 52 L~~L~~~glv~~~r~G~~~~Y~l~~~ 77 (94)
T d1r1ua_ 52 LKLLKSVHLVKAKRQGQSMIYSLDDI 77 (94)
T ss_dssp HHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred HHHHHHCCceEEEEECCEEEEEECcH
Confidence 68888889898899999999998764
No 4
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=34.94 E-value=22 Score=29.02 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 035762 50 KAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKI 86 (268)
Q Consensus 50 ~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~ 86 (268)
..|+.+.+.++..|++=.+..+.++++++.+++++..
T Consensus 227 ~~L~e~Ae~~e~~i~~l~e~~~e~~~~v~~LE~~yD~ 263 (269)
T d2p90a1 227 LALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDS 263 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhHhh
Confidence 3566777777778777777799999999999999853
No 5
>d3e9va1 d.370.1.1 (A:9-128) NGF-inducible anti-proliferative protein PC3 (BTG2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.67 E-value=27 Score=26.21 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=25.4
Q ss_pred hhHHh--hhhcCHHHHHHHHHHHHHHHHHhhh
Q 035762 158 LSSYM--RGRLTLEKVNAAVNDMATYAEANAH 187 (268)
Q Consensus 158 iP~Ym--rGRLTleqvN~~i~ein~~~~~Ky~ 187 (268)
|-+|+ .|||+-++|+.+-+++..++..||+
T Consensus 13 l~~ll~~~~~l~~~~~~~F~~~L~~~L~~~y~ 44 (120)
T d3e9va1 13 LSSLLRTRGCVSEQRLKVFSGALQEALTEHYK 44 (120)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34455 7889999999999999999999987
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=25.10 E-value=1e+02 Score=21.40 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHH
Q 035762 19 TRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIK 60 (268)
Q Consensus 19 ~rI~~lk~l~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~~ 60 (268)
+-...+++-+.-|+.+.. .+.+..++...+.+-.+++.++
T Consensus 9 ~n~e~v~~~l~~R~~~~~--ld~i~~ld~~rr~l~~~~e~l~ 48 (110)
T d1seta1 9 QEPEVFHRAIREKGVALD--LEALLALDREVQELKKRLQEVQ 48 (110)
T ss_dssp HCHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCccC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555654332 4555555555555555554443
No 7
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=23.95 E-value=81 Score=22.35 Aligned_cols=16 Identities=6% Similarity=0.019 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhcCC
Q 035762 80 SLRQQKILQNMSSYAS 95 (268)
Q Consensus 80 ~~~q~~~lqhm~~nvP 95 (268)
+....+.+.++.+..|
T Consensus 98 l~~~~~~l~~l~~~~~ 113 (127)
T d1q06a_ 98 LQSMRDQLLALANACP 113 (127)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3333445555555544
No 8
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.58 E-value=23 Score=27.20 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=31.5
Q ss_pred ccchhhhHHHHHHhhchhhhhccCCeEEEEeeCCC
Q 035762 234 LDNTGKAILTVLRHLGRISETRIGHHRVIILLKPQ 268 (268)
Q Consensus 234 lDkt~k~il~iLRHl~Rl~E~R~g~~~~y~l~~~~ 268 (268)
-|-+.++-++.||-+.|+.-.+-.|++.|+=+.|+
T Consensus 55 ~~~~~HAE~~Ai~~a~~~~~~~l~~~tlyvTlEPC 89 (156)
T d1p6oa_ 55 GSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC 89 (156)
T ss_dssp TCSSCCHHHHHHHHHCSCCHHHHTTEEEEEEECCC
T ss_pred cccccchHHHHHHHHhccccccccceEEEeeccCC
Confidence 46788999999999999988888999999999996
No 9
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.30 E-value=96 Score=20.84 Aligned_cols=14 Identities=7% Similarity=0.278 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHH
Q 035762 15 SSFNTRIADLQELV 28 (268)
Q Consensus 15 s~~n~rI~~lk~l~ 28 (268)
..+|+.+..|+.+|
T Consensus 19 ~~in~~f~~Lr~ll 32 (88)
T d1nkpa_ 19 NELKRSFFALRDQI 32 (88)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 46778887776665
No 10
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.16 E-value=1.1e+02 Score=21.67 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=39.3
Q ss_pred CccccChHHhhhhhHHhhhhcCHHHHHHHHHHHHHHHHHhhhhhccchhhhcH--HHHHHHHH
Q 035762 146 PLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAG--NLWERALE 206 (268)
Q Consensus 146 ~~~~IT~eEF~siP~YmrGRLTleqvN~~i~ein~~~~~Ky~il~~pkk~l~~--~~~~r~~e 206 (268)
..|++|.++...-|++..| +|.++=...-......+..=...|..|...+.- ..++||-.
T Consensus 3 ~~w~~t~~~l~~~pS~~~g-i~~~~E~~~R~~~~~~i~~~~~~l~l~~~t~~~A~~l~~Rf~~ 64 (143)
T d2ivxa1 3 SRWFFTREQLENTPSRRCG-VEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYM 64 (143)
T ss_dssp GGGSCCHHHHHSCHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHhCcccccC-CCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3699999999999998888 787765554445555554445555555553322 56677643
Done!