BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035766
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RTT|A Chain A, Crystal Structure Determination Of A Putative
Nadh-Dependent Reductase Using Sulfur Anomalous Signal
pdb|1X77|A Chain A, Crystal Struture Of A Nad(P)h-Dependent Fmn Reductase
Complexed With Fmn
pdb|1X77|B Chain B, Crystal Struture Of A Nad(P)h-Dependent Fmn Reductase
Complexed With Fmn
Length = 193
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 26 VQGPLKNAIDWASRPPN--VWXXXXXXXXXXXXXXXXXXXQYHLRQIGVYLDLHFVNKPE 83
+ G LKNAIDWASRPP QYHLRQ V+LD+H +NKPE
Sbjct: 87 MAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFGTARAQYHLRQTLVFLDVHPLNKPE 146
Query: 84 YFLNAFQPPAKFDSDGNLIDEESKE 108
+++ Q FD+ G L+D++++E
Sbjct: 147 VMISSAQ--NAFDAQGRLLDDKARE 169
>pdb|3SVL|A Chain A, Structural Basis Of The Improvement Of Chrr - A
Multi-Purpose Enzyme
pdb|3SVL|B Chain B, Structural Basis Of The Improvement Of Chrr - A
Multi-Purpose Enzyme
Length = 193
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 17 LLTDLFSSFVQGPLKNAIDWASRPPN--VWXXXXXXXXXXXXXXXXXXXQYHLRQIGVYL 74
++T ++ V G LKNAIDW SR P+ + QYHLRQI V+L
Sbjct: 78 IVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFL 137
Query: 75 DLHFVNKPEYFLNAFQPPAKFD-SDGNLIDEESKEKLKAVLLALRAFTLRLQ 125
D +NKPE+ Q K D G +ID+ + + L L A F R++
Sbjct: 138 DAMVMNKPEFMGGVIQ--NKVDPQTGEVIDQGTLDHLTGQLTAFGEFIQRVK 187
>pdb|3S2Y|A Chain A, Crystal Structure Of A ChromateURANIUM REDUCTASE FROM
Gluconacetobacter Hansenii
pdb|3S2Y|B Chain B, Crystal Structure Of A ChromateURANIUM REDUCTASE FROM
Gluconacetobacter Hansenii
pdb|3S2Y|C Chain C, Crystal Structure Of A ChromateURANIUM REDUCTASE FROM
Gluconacetobacter Hansenii
pdb|3S2Y|D Chain D, Crystal Structure Of A ChromateURANIUM REDUCTASE FROM
Gluconacetobacter Hansenii
Length = 199
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 17 LLTDLFSSFVQGPLKNAIDWASR--PPNVWXXXXXXXXXXXXXXXXXXXQYHLRQIGVYL 74
++T ++ V G LKNAIDW SR P + QYHLRQ V+L
Sbjct: 79 IVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQYHLRQSLVFL 138
Query: 75 DLHFVNKPEYFLNAFQPPAKFDSDG-NLIDEESKEKLKAVLLALRAFTLRL 124
D + +N+PE + Q K D+ L D ++E L L AL A L
Sbjct: 139 DAYVLNRPEAMIG--QVTGKVDAQTLELSDVATREFLARQLDALAALARTL 187
>pdb|4H6P|A Chain A, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A R101a
Substitution.
pdb|4H6P|B Chain B, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A R101a
Substitution.
pdb|4H6P|C Chain C, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A R101a
Substitution.
pdb|4H6P|D Chain D, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A R101a
Substitution.
pdb|4H6P|E Chain E, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A R101a
Substitution.
pdb|4H6P|F Chain F, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A R101a
Substitution.
pdb|4H6P|G Chain G, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A R101a
Substitution.
pdb|4H6P|H Chain H, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A R101a
Substitution.
pdb|4H6P|I Chain I, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A R101a
Substitution.
pdb|4H6P|J Chain J, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A R101a
Substitution.
pdb|4H6P|K Chain K, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A R101a
Substitution.
pdb|4H6P|L Chain L, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A R101a
Substitution
Length = 199
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 17 LLTDLFSSFVQGPLKNAIDW--ASRPPNVWXXXXXXXXXXXXXXXXXXXQYHLRQIGVYL 74
++T ++ V G LKNAIDW A P + QYHLRQ V+L
Sbjct: 79 IVTPEYNYSVPGVLKNAIDWLSAVSPQPLAGKPVALVTASPGMIGGARAQYHLRQSLVFL 138
Query: 75 DLHFVNKPEYFLNAFQPPAKFDSDG-NLIDEESKEKLKAVLLALRAFTLRL 124
D + +N+PE + Q K D+ L D ++E L L AL A L
Sbjct: 139 DAYVLNRPEAMIG--QVTGKVDAQTLELSDVATREFLARQLDALAALARTL 187
>pdb|4HS4|A Chain A, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A Y129n
Substitution.
pdb|4HS4|B Chain B, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A Y129n
Substitution.
pdb|4HS4|C Chain C, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A Y129n
Substitution.
pdb|4HS4|D Chain D, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A Y129n
Substitution.
pdb|4HS4|E Chain E, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A Y129n
Substitution.
pdb|4HS4|F Chain F, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A Y129n
Substitution.
pdb|4HS4|G Chain G, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A Y129n
Substitution.
pdb|4HS4|H Chain H, Crystal Structure Of A Putative Chromate Reductase From
Gluconacetobacter Hansenii, Gh-Chrr, Containing A Y129n
Substitution
Length = 199
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 17 LLTDLFSSFVQGPLKNAIDWASR--PPNVWXXXXXXXXXXXXXXXXXXXQYHLRQIGVYL 74
++T ++ V G LKNAIDW SR P + Q HLRQ V+L
Sbjct: 79 IVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFL 138
Query: 75 DLHFVNKPEYFLNAFQPPAKFDSDG-NLIDEESKEKLKAVLLALRAFTLRL 124
D + +N+PE + Q K D+ L D ++E L L AL A L
Sbjct: 139 DAYVLNRPEAMIG--QVTGKVDAQTLELSDVATREFLARQLDALAALARTL 187
>pdb|3U7R|A Chain A, Ferb - Flavoenzyme Nad(P)h:(Acceptor) Oxidoreductase
(Ferb) From Paracoccus Denitrificans
pdb|3U7R|B Chain B, Ferb - Flavoenzyme Nad(P)h:(Acceptor) Oxidoreductase
(Ferb) From Paracoccus Denitrificans
Length = 190
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 18 LTDLFSSFVQGPLKNAIDWASRP 40
+T ++ G +KNAIDWA+RP
Sbjct: 74 ITPEYNRSYPGXIKNAIDWATRP 96
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 67 LRQIGVYLDLHFVNKPEYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLL 115
R GV+LD+H+++ + F P +F LIDE K +K + +
Sbjct: 204 FRVAGVFLDIHYMDSYKLFT---WHPYRFPEPKKLIDELHKRNVKLITI 249
>pdb|3SN0|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Fumarate
pdb|3SN1|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Tartrate
pdb|3SN4|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Alpha- Ketoglutarate
Length = 409
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 70 IGVYLDLHFVNKPEYFLNAFQPPAKFDSDGNLIDEESKEKLKAV 113
+ + LDL+F KPE +L + A FD ID S + L V
Sbjct: 214 VEILLDLNFNAKPEGYLKILRELADFDLFWVEIDSYSPQGLAYV 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.143 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,332,051
Number of Sequences: 62578
Number of extensions: 104054
Number of successful extensions: 290
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 13
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)