Query 035766
Match_columns 128
No_of_seqs 132 out of 1145
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:11:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02690 resist_ArsH arsenica 100.0 3.6E-32 7.8E-37 205.6 11.9 120 4-126 83-205 (219)
2 PRK10569 NAD(P)H-dependent FMN 100.0 6.4E-28 1.4E-32 179.1 12.6 118 2-124 57-175 (191)
3 KOG4530 Predicted flavoprotein 100.0 5.1E-28 1.1E-32 173.7 10.1 112 6-121 81-193 (199)
4 TIGR03567 FMN_reduc_SsuE FMN r 100.0 1.5E-27 3.3E-32 173.7 11.8 112 3-119 57-170 (171)
5 TIGR03566 FMN_reduc_MsuE FMN r 99.9 3.7E-27 8.1E-32 171.8 12.2 113 3-123 60-173 (174)
6 COG0431 Predicted flavoprotein 99.9 1.7E-26 3.7E-31 170.4 10.5 112 4-122 60-176 (184)
7 PF03358 FMN_red: NADPH-depend 99.8 1.1E-19 2.3E-24 128.9 10.3 83 2-86 61-147 (152)
8 PRK13556 azoreductase; Provisi 99.8 1.7E-18 3.8E-23 129.4 12.0 107 4-122 82-206 (208)
9 PRK13555 azoreductase; Provisi 99.7 1.3E-16 2.9E-21 119.9 12.8 76 4-79 82-175 (208)
10 PRK00170 azoreductase; Reviewe 99.7 1E-16 2.3E-21 118.3 11.8 77 3-79 78-169 (201)
11 COG1182 AcpD Acyl carrier prot 99.7 1.9E-16 4.1E-21 117.9 11.2 81 4-86 80-177 (202)
12 PRK01355 azoreductase; Reviewe 99.7 7.2E-16 1.6E-20 114.7 11.8 82 4-87 70-169 (199)
13 PRK03767 NAD(P)H:quinone oxido 99.6 1.4E-14 3E-19 107.8 13.9 120 6-126 64-200 (200)
14 TIGR01755 flav_wrbA NAD(P)H:qu 99.6 6.5E-14 1.4E-18 104.2 13.4 117 7-124 64-197 (197)
15 PRK09739 hypothetical protein; 99.6 5.4E-14 1.2E-18 104.4 12.3 78 3-80 71-163 (199)
16 PF02525 Flavodoxin_2: Flavodo 99.4 4.8E-12 1E-16 93.5 11.6 80 6-87 73-177 (199)
17 COG0655 WrbA Multimeric flavod 99.3 6.2E-12 1.3E-16 94.0 8.2 79 2-80 66-149 (207)
18 PRK04930 glutathione-regulated 99.2 2.5E-10 5.4E-15 84.5 11.8 75 6-80 56-149 (184)
19 PRK00871 glutathione-regulated 99.2 2.9E-10 6.3E-15 83.7 12.1 106 6-122 50-172 (176)
20 PRK06242 flavodoxin; Provision 99.1 9.1E-10 2E-14 77.7 11.3 101 7-118 39-147 (150)
21 PRK05569 flavodoxin; Provision 99.0 7.4E-09 1.6E-13 72.5 11.7 95 7-118 44-140 (141)
22 TIGR01753 flav_short flavodoxi 98.9 4.6E-08 9.9E-13 67.7 11.4 96 7-117 41-139 (140)
23 PRK05568 flavodoxin; Provision 98.9 5.7E-08 1.2E-12 68.0 11.0 95 7-118 44-140 (142)
24 PRK06703 flavodoxin; Provision 98.8 2.8E-07 6E-12 65.4 12.3 103 8-124 45-150 (151)
25 PRK06756 flavodoxin; Provision 98.8 3.1E-07 6.7E-12 64.9 12.4 98 7-119 45-145 (148)
26 PRK11921 metallo-beta-lactamas 98.7 2.9E-07 6.2E-12 74.9 12.5 98 5-119 294-391 (394)
27 PRK05452 anaerobic nitric oxid 98.7 3.7E-07 8E-12 76.3 13.0 100 5-122 298-397 (479)
28 COG2249 MdaB Putative NADPH-qu 98.6 7.7E-07 1.7E-11 66.2 10.2 76 5-80 61-158 (189)
29 PRK06934 flavodoxin; Provision 98.6 7.2E-07 1.6E-11 67.9 9.8 67 6-79 124-191 (221)
30 PRK07308 flavodoxin; Validated 98.5 5E-06 1.1E-10 58.6 11.7 98 7-119 44-144 (146)
31 PRK07116 flavodoxin; Provision 98.4 9.2E-07 2E-11 63.6 6.8 61 7-72 72-132 (160)
32 PRK09267 flavodoxin FldA; Vali 98.4 3.3E-06 7.1E-11 60.9 8.8 72 7-80 42-118 (169)
33 TIGR01752 flav_long flavodoxin 98.3 1.7E-05 3.6E-10 57.4 11.4 72 7-80 40-116 (167)
34 PF12682 Flavodoxin_4: Flavodo 98.2 8.2E-06 1.8E-10 58.8 6.9 65 8-79 70-134 (156)
35 PRK12359 flavodoxin FldB; Prov 98.0 0.00033 7.2E-09 51.4 12.1 71 7-79 41-116 (172)
36 COG0426 FpaA Uncharacterized f 97.9 0.00017 3.7E-09 59.0 10.6 100 2-118 288-387 (388)
37 KOG3135 1,4-benzoquinone reduc 97.8 7.8E-05 1.7E-09 54.7 6.7 75 5-80 63-142 (203)
38 PRK09004 FMN-binding protein M 97.8 0.00073 1.6E-08 48.0 11.1 74 6-79 41-117 (146)
39 PRK09271 flavodoxin; Provision 97.8 0.00027 5.8E-09 50.8 8.8 63 8-72 48-115 (160)
40 PF12724 Flavodoxin_5: Flavodo 97.7 5.7E-05 1.2E-09 53.2 4.8 48 7-57 39-86 (143)
41 TIGR01754 flav_RNR ribonucleot 97.6 0.00078 1.7E-08 47.1 9.4 60 8-72 47-111 (140)
42 PRK11104 hemG protoporphyrinog 97.6 0.00012 2.6E-09 53.7 4.6 45 8-55 43-87 (177)
43 PF00258 Flavodoxin_1: Flavodo 97.1 0.0019 4.2E-08 44.8 6.3 74 7-80 41-123 (143)
44 PRK08105 flavodoxin; Provision 96.5 0.017 3.7E-07 41.1 7.4 70 11-80 48-120 (149)
45 PF12641 Flavodoxin_3: Flavodo 96.1 0.032 6.8E-07 40.4 6.8 56 9-71 37-93 (160)
46 PRK05723 flavodoxin; Provision 95.3 0.19 4.1E-06 35.9 8.3 67 13-79 49-120 (151)
47 PRK03600 nrdI ribonucleotide r 95.0 0.49 1.1E-05 33.2 9.6 87 9-117 36-128 (134)
48 PRK10953 cysJ sulfite reductas 93.5 0.38 8.2E-06 41.7 7.7 73 7-79 104-180 (600)
49 COG4635 HemG Flavodoxin [Energ 92.7 0.16 3.5E-06 37.2 3.6 62 8-72 44-109 (175)
50 COG0716 FldA Flavodoxins [Ener 92.4 2 4.4E-05 30.2 9.0 99 10-119 47-149 (151)
51 TIGR01931 cysJ sulfite reducta 92.0 0.76 1.7E-05 39.7 7.5 73 7-79 101-177 (597)
52 TIGR00333 nrdI ribonucleoside- 82.6 14 0.0003 25.7 9.8 39 11-57 35-74 (125)
53 PF02153 PDH: Prephenate dehyd 81.4 5 0.00011 30.8 5.7 36 42-79 119-154 (258)
54 PF01926 MMR_HSR1: 50S ribosom 81.0 3.2 6.9E-05 27.2 4.0 42 4-52 72-113 (116)
55 PRK02551 flavoprotein NrdI; Pr 80.7 19 0.0004 26.0 8.5 65 12-79 54-127 (154)
56 KOG1399 Flavin-containing mono 79.7 2.3 5E-05 35.7 3.6 52 11-65 141-204 (448)
57 PF02450 LCAT: Lecithin:choles 77.7 8.5 0.00018 31.4 6.2 62 2-70 67-140 (389)
58 TIGR03609 S_layer_CsaB polysac 76.0 9.5 0.00021 29.4 5.9 56 4-60 57-114 (298)
59 PRK10017 colanic acid biosynth 75.4 7.9 0.00017 32.2 5.5 54 4-61 110-164 (426)
60 PRK06035 3-hydroxyacyl-CoA deh 74.9 8.5 0.00018 29.8 5.4 97 7-117 81-177 (291)
61 cd01857 HSR1_MMR1 HSR1/MMR1. 73.4 7.7 0.00017 26.6 4.3 50 1-54 1-50 (141)
62 PF07972 Flavodoxin_NdrI: NrdI 72.3 5.9 0.00013 27.5 3.5 63 11-79 37-105 (122)
63 PF12242 Eno-Rase_NADH_b: NAD( 70.0 2.3 4.9E-05 27.4 0.9 31 28-59 21-52 (78)
64 PF09419 PGP_phosphatase: Mito 70.0 11 0.00024 27.5 4.6 58 18-79 52-110 (168)
65 cd01859 MJ1464 MJ1464. This f 69.6 12 0.00027 25.8 4.7 23 1-23 1-24 (156)
66 PRK07634 pyrroline-5-carboxyla 69.6 43 0.00094 24.8 8.2 39 6-55 61-99 (245)
67 PF01210 NAD_Gly3P_dh_N: NAD-d 69.3 8.1 0.00018 27.2 3.8 60 5-74 63-125 (157)
68 PRK12439 NAD(P)H-dependent gly 67.7 26 0.00056 28.0 6.7 56 7-71 73-130 (341)
69 PRK06928 pyrroline-5-carboxyla 65.9 44 0.00096 25.8 7.6 92 7-116 60-153 (277)
70 PF01154 HMG_CoA_synt_N: Hydro 64.8 8.7 0.00019 28.3 3.2 28 26-55 120-147 (174)
71 PLN02172 flavin-containing mon 63.6 6.3 0.00014 33.0 2.6 58 11-70 161-226 (461)
72 PF13738 Pyr_redox_3: Pyridine 63.1 8 0.00017 27.5 2.8 54 11-71 126-187 (203)
73 cd01898 Obg Obg subfamily. Th 62.9 22 0.00047 24.3 4.9 51 4-54 71-122 (170)
74 PF10087 DUF2325: Uncharacteri 61.4 8.4 0.00018 25.0 2.4 44 4-55 41-84 (97)
75 TIGR01840 esterase_phb esteras 60.8 18 0.00038 26.4 4.3 50 7-57 36-106 (212)
76 PRK07680 late competence prote 59.5 63 0.0014 24.7 7.4 59 7-80 58-117 (273)
77 KOG1631 Translocon-associated 58.5 2.5 5.5E-05 32.6 -0.6 36 20-55 117-152 (261)
78 PF12694 MoCo_carrier: Putativ 58.3 66 0.0014 23.1 7.9 63 6-80 58-120 (145)
79 cd08148 RuBisCO_large Ribulose 58.2 25 0.00053 28.9 5.0 67 5-79 274-342 (366)
80 TIGR03326 rubisco_III ribulose 58.1 34 0.00074 28.5 5.9 67 5-79 292-361 (412)
81 PF12695 Abhydrolase_5: Alpha/ 56.6 26 0.00056 23.0 4.3 52 2-56 15-71 (145)
82 COG1780 NrdI Protein involved 55.7 73 0.0016 22.7 8.1 93 11-122 39-134 (141)
83 PF08840 BAAT_C: BAAT / Acyl-C 54.9 24 0.00051 26.2 4.2 46 29-78 5-50 (213)
84 COG1160 Predicted GTPases [Gen 54.8 32 0.0007 29.0 5.3 38 1-39 73-110 (444)
85 COG2072 TrkA Predicted flavopr 54.7 8 0.00017 32.2 1.7 46 10-55 131-184 (443)
86 PF03283 PAE: Pectinacetyleste 53.9 38 0.00082 27.6 5.5 44 27-72 137-182 (361)
87 COG0240 GpsA Glycerol-3-phosph 53.9 64 0.0014 26.2 6.7 59 5-73 65-126 (329)
88 PF00255 GSHPx: Glutathione pe 53.7 65 0.0014 21.7 5.8 38 42-79 17-57 (108)
89 COG2820 Udp Uridine phosphoryl 53.4 35 0.00077 26.6 4.9 34 42-79 53-87 (248)
90 cd02983 P5_C P5 family, C-term 53.3 67 0.0015 22.0 6.0 91 15-115 24-116 (130)
91 PRK12491 pyrroline-5-carboxyla 53.2 77 0.0017 24.5 6.9 51 7-72 59-110 (272)
92 PRK10846 bifunctional folylpol 53.0 85 0.0018 25.6 7.5 73 28-107 33-105 (416)
93 PRK07417 arogenate dehydrogena 50.5 86 0.0019 24.0 6.8 16 7-22 53-68 (279)
94 PF05368 NmrA: NmrA-like famil 50.2 23 0.00049 26.0 3.4 36 4-39 57-92 (233)
95 PRK08293 3-hydroxybutyryl-CoA 50.2 68 0.0015 24.7 6.2 16 7-22 80-95 (287)
96 cd04161 Arl2l1_Arl13_like Arl2 50.0 49 0.0011 22.9 5.0 46 7-55 62-109 (167)
97 cd01878 HflX HflX subfamily. 49.5 62 0.0013 23.1 5.6 45 8-54 117-161 (204)
98 PRK00257 erythronate-4-phospha 49.0 94 0.002 25.6 7.1 67 7-79 75-143 (381)
99 PRK15438 erythronate-4-phospha 48.0 1.3E+02 0.0028 24.7 7.8 67 7-79 75-143 (378)
100 PRK11559 garR tartronate semia 48.0 1.2E+02 0.0027 23.1 8.4 24 6-34 53-76 (296)
101 PF06703 SPC25: Microsomal sig 48.0 9.7 0.00021 27.2 1.1 26 92-117 137-162 (162)
102 TIGR01499 folC folylpolyglutam 47.8 88 0.0019 25.2 6.7 69 29-106 3-73 (397)
103 PF13344 Hydrolase_6: Haloacid 47.1 26 0.00057 22.9 3.0 62 11-86 4-65 (101)
104 smart00175 RAB Rab subfamily o 46.6 42 0.0009 22.6 4.1 47 6-55 67-114 (164)
105 cd08213 RuBisCO_large_III Ribu 46.5 46 0.00099 27.8 4.9 70 5-79 279-361 (412)
106 TIGR03376 glycerol3P_DH glycer 46.2 1.1E+02 0.0024 24.7 7.0 57 5-71 76-137 (342)
107 PRK09549 mtnW 2,3-diketo-5-met 45.9 52 0.0011 27.4 5.2 67 5-79 282-350 (407)
108 PF00205 TPP_enzyme_M: Thiamin 45.5 77 0.0017 21.3 5.3 33 45-80 11-44 (137)
109 cd04146 RERG_RasL11_like RERG/ 45.2 35 0.00075 23.3 3.6 50 5-54 65-114 (165)
110 smart00178 SAR Sar1p-like memb 44.9 41 0.00089 23.8 4.0 45 7-55 80-127 (184)
111 cd01858 NGP_1 NGP-1. Autoanti 44.9 40 0.00086 23.3 3.8 46 4-53 1-46 (157)
112 PF04230 PS_pyruv_trans: Polys 44.7 52 0.0011 23.7 4.6 18 42-59 95-113 (286)
113 PF08948 DUF1859: Domain of un 44.3 7.5 0.00016 26.4 0.0 13 17-29 10-22 (126)
114 PLN02545 3-hydroxybutyryl-CoA 44.2 60 0.0013 25.0 5.1 29 7-35 79-107 (295)
115 PF00326 Peptidase_S9: Prolyl 44.1 24 0.00051 25.5 2.7 48 7-55 7-72 (213)
116 PF02826 2-Hacid_dh_C: D-isome 43.6 43 0.00093 24.0 3.9 32 42-79 32-63 (178)
117 PF04723 GRDA: Glycine reducta 43.3 1.2E+02 0.0026 21.7 6.9 61 43-117 2-64 (150)
118 TIGR03594 GTPase_EngA ribosome 42.8 56 0.0012 26.5 4.9 36 3-39 70-105 (429)
119 TIGR03695 menH_SHCHC 2-succiny 42.6 66 0.0014 22.3 4.8 55 1-55 16-78 (251)
120 PF10740 DUF2529: Protein of u 42.2 17 0.00038 26.7 1.6 38 7-53 77-115 (172)
121 PRK05808 3-hydroxybutyryl-CoA 41.6 56 0.0012 25.0 4.5 96 7-117 78-174 (282)
122 PF11189 DUF2973: Protein of u 41.5 9.9 0.00021 23.5 0.2 15 92-106 47-61 (65)
123 PRK05282 (alpha)-aspartyl dipe 40.9 1.2E+02 0.0026 23.2 6.2 61 14-79 3-65 (233)
124 TIGR03156 GTP_HflX GTP-binding 40.6 75 0.0016 25.6 5.3 48 5-54 262-309 (351)
125 PRK10162 acetyl esterase; Prov 40.6 29 0.00064 27.2 2.9 55 2-56 100-164 (318)
126 cd06153 YjgF_YER057c_UK114_lik 40.4 75 0.0016 21.3 4.5 38 83-123 14-51 (114)
127 PLN02256 arogenate dehydrogena 40.1 1.7E+02 0.0037 23.1 7.2 21 11-37 92-112 (304)
128 cd04162 Arl9_Arfrp2_like Arl9/ 39.7 77 0.0017 21.9 4.7 46 7-55 63-108 (164)
129 PTZ00345 glycerol-3-phosphate 39.4 1.5E+02 0.0032 24.3 6.8 59 5-71 87-150 (365)
130 PLN02913 dihydrofolate synthet 39.0 1.9E+02 0.0041 24.6 7.6 70 29-107 60-133 (510)
131 cd00879 Sar1 Sar1 subfamily. 38.8 74 0.0016 22.3 4.5 45 7-55 82-129 (190)
132 COG2453 CDC14 Predicted protei 38.8 59 0.0013 23.5 4.1 50 12-63 71-124 (180)
133 smart00177 ARF ARF-like small 38.7 28 0.00062 24.4 2.3 44 9-55 78-123 (175)
134 PF00025 Arf: ADP-ribosylation 38.7 47 0.001 23.5 3.5 50 1-55 74-124 (175)
135 cd04158 ARD1 ARD1 subfamily. 38.6 69 0.0015 22.1 4.3 46 7-55 62-109 (169)
136 TIGR03316 ygeW probable carbam 38.5 2.1E+02 0.0046 23.3 7.6 36 44-79 168-205 (357)
137 COG0345 ProC Pyrroline-5-carbo 37.6 2E+02 0.0043 22.5 8.2 91 7-117 58-151 (266)
138 cd00157 Rho Rho (Ras homology) 37.5 35 0.00076 23.2 2.6 43 9-54 69-112 (171)
139 cd01892 Miro2 Miro2 subfamily. 37.4 93 0.002 21.6 4.8 44 8-55 74-117 (169)
140 CHL00040 rbcL ribulose-1,5-bis 37.3 65 0.0014 27.5 4.5 69 6-79 317-399 (475)
141 cd05212 NAD_bind_m-THF_DH_Cycl 36.8 84 0.0018 22.0 4.5 36 18-56 3-38 (140)
142 cd04112 Rab26 Rab26 subfamily. 36.7 53 0.0011 23.3 3.5 46 6-54 68-114 (191)
143 PRK07530 3-hydroxybutyryl-CoA 36.6 93 0.002 23.9 5.1 26 7-32 79-104 (292)
144 PF05728 UPF0227: Uncharacteri 36.4 49 0.0011 24.3 3.3 40 15-58 31-71 (187)
145 COG3634 AhpF Alkyl hydroperoxi 36.2 44 0.00096 28.0 3.3 59 10-70 312-376 (520)
146 cd04101 RabL4 RabL4 (Rab-like4 36.2 63 0.0014 21.8 3.7 46 6-54 70-115 (164)
147 TIGR03332 salvage_mtnW 2,3-dik 35.9 1.1E+02 0.0024 25.5 5.6 68 4-79 286-355 (407)
148 cd04140 ARHI_like ARHI subfami 35.7 69 0.0015 21.9 3.9 48 8-55 69-117 (165)
149 cd08209 RLP_DK-MTP-1-P-enolase 35.5 1.2E+02 0.0026 25.1 5.8 69 3-79 270-339 (391)
150 cd01894 EngA1 EngA1 subfamily. 35.3 1.1E+02 0.0024 20.1 4.8 47 3-55 68-114 (157)
151 COG0287 TyrA Prephenate dehydr 35.3 1.2E+02 0.0025 23.9 5.4 26 6-33 59-84 (279)
152 cd04176 Rap2 Rap2 subgroup. T 35.0 83 0.0018 21.2 4.2 46 8-54 69-114 (163)
153 cd01881 Obg_like The Obg-like 34.9 78 0.0017 21.5 4.0 52 4-55 67-129 (176)
154 PRK03003 GTP-binding protein D 34.8 96 0.0021 25.9 5.2 44 5-54 111-154 (472)
155 cd04124 RabL2 RabL2 subfamily. 34.6 64 0.0014 22.1 3.6 46 7-55 68-113 (161)
156 TIGR00112 proC pyrroline-5-car 34.5 2E+02 0.0044 21.7 7.4 50 8-71 40-89 (245)
157 PRK06545 prephenate dehydrogen 34.2 1.1E+02 0.0024 24.5 5.3 17 6-22 55-71 (359)
158 KOG0075 GTP-binding ADP-ribosy 34.2 1.4E+02 0.0031 21.9 5.3 74 1-84 81-157 (186)
159 cd04149 Arf6 Arf6 subfamily. 34.2 58 0.0013 22.7 3.3 45 8-55 73-119 (168)
160 PRK06427 bifunctional hydroxy- 34.0 1.4E+02 0.0031 22.4 5.7 63 49-115 7-70 (266)
161 COG3007 Uncharacterized paraqu 34.0 76 0.0016 25.9 4.2 42 17-59 11-54 (398)
162 PRK12299 obgE GTPase CgtA; Rev 33.7 95 0.0021 24.9 4.8 52 3-54 228-279 (335)
163 PF13241 NAD_binding_7: Putati 33.0 73 0.0016 20.7 3.5 30 43-78 4-33 (103)
164 PRK08666 5'-methylthioadenosin 33.0 43 0.00093 25.8 2.6 44 14-57 5-53 (261)
165 cd04141 Rit_Rin_Ric Rit/Rin/Ri 32.9 89 0.0019 21.8 4.1 46 8-54 70-115 (172)
166 PLN03071 GTP-binding nuclear p 32.8 42 0.0009 24.8 2.5 43 9-54 83-125 (219)
167 cd04150 Arf1_5_like Arf1-Arf5- 32.5 64 0.0014 22.1 3.3 45 8-55 64-110 (159)
168 cd08206 RuBisCO_large_I_II_III 32.4 1.1E+02 0.0024 25.5 5.1 69 6-79 282-363 (414)
169 cd01864 Rab19 Rab19 subfamily. 32.4 81 0.0018 21.4 3.8 46 7-54 71-116 (165)
170 COG0061 nadF NAD kinase [Coenz 32.2 26 0.00056 27.4 1.3 19 11-29 165-187 (281)
171 PLN02881 tetrahydrofolylpolygl 32.0 1.8E+02 0.0038 25.2 6.4 71 29-106 44-116 (530)
172 PRK00094 gpsA NAD(P)H-dependen 31.8 2.4E+02 0.0051 21.7 6.8 26 7-38 67-92 (325)
173 PF01993 MTD: methylene-5,6,7, 31.8 56 0.0012 25.7 3.0 54 11-80 59-115 (276)
174 PRK08410 2-hydroxyacid dehydro 31.7 75 0.0016 25.1 3.9 31 43-79 142-172 (311)
175 PLN02511 hydrolase 31.5 78 0.0017 25.6 4.0 41 22-67 151-191 (388)
176 PF13271 DUF4062: Domain of un 31.4 74 0.0016 19.9 3.2 26 2-27 43-68 (83)
177 cd04151 Arl1 Arl1 subfamily. 31.2 1E+02 0.0022 20.7 4.2 46 8-55 63-109 (158)
178 cd04138 H_N_K_Ras_like H-Ras/N 31.0 1E+02 0.0023 20.4 4.1 48 7-55 68-115 (162)
179 PRK05584 5'-methylthioadenosin 31.0 2.2E+02 0.0047 21.0 6.6 50 26-77 9-69 (230)
180 PF08477 Miro: Miro-like prote 30.9 28 0.0006 22.4 1.1 43 9-54 71-116 (119)
181 cd00154 Rab Rab family. Rab G 30.8 1.1E+02 0.0023 20.0 4.1 47 6-55 67-114 (159)
182 PRK14077 pnk inorganic polypho 30.7 27 0.00059 27.5 1.2 18 11-28 176-197 (287)
183 KOG1393 Hydroxymethylglutaryl- 30.5 57 0.0012 27.4 3.0 28 25-54 126-153 (462)
184 PRK00093 GTP-binding protein D 30.5 1.2E+02 0.0027 24.6 5.1 45 4-54 73-117 (435)
185 PRK15473 cbiF cobalt-precorrin 30.1 1.2E+02 0.0025 23.2 4.6 49 5-55 27-89 (257)
186 PRK06129 3-hydroxyacyl-CoA deh 30.1 1.9E+02 0.004 22.5 5.9 19 5-23 76-94 (308)
187 TIGR01833 HMG-CoA-S_euk 3-hydr 29.9 45 0.00098 28.1 2.4 36 20-57 328-364 (454)
188 PF03721 UDPG_MGDP_dh_N: UDP-g 29.7 1.8E+02 0.0039 21.1 5.4 65 6-75 71-139 (185)
189 PRK06130 3-hydroxybutyryl-CoA 29.7 1.7E+02 0.0038 22.5 5.6 26 7-32 75-100 (311)
190 COG0111 SerA Phosphoglycerate 29.7 78 0.0017 25.4 3.7 32 42-79 138-169 (324)
191 cd01856 YlqF YlqF. Proteins o 29.6 54 0.0012 23.1 2.5 20 2-21 10-29 (171)
192 cd00877 Ran Ran (Ras-related n 29.4 52 0.0011 22.8 2.4 45 8-55 69-113 (166)
193 PF04658 TAFII55_N: TAFII55 pr 29.4 33 0.00071 24.9 1.4 18 19-36 114-131 (162)
194 cd04157 Arl6 Arl6 subfamily. 29.3 1.7E+02 0.0036 19.5 5.0 48 7-55 64-113 (162)
195 PRK10566 esterase; Provisional 29.3 2.2E+02 0.0048 20.6 6.9 52 2-55 43-115 (249)
196 COG2240 PdxK Pyridoxal/pyridox 29.1 2.8E+02 0.0062 22.0 6.6 20 70-89 23-42 (281)
197 PLN00021 chlorophyllase 29.1 1.1E+02 0.0024 24.2 4.5 55 2-57 68-137 (313)
198 cd04160 Arfrp1 Arfrp1 subfamil 28.9 1.2E+02 0.0026 20.5 4.2 47 8-55 70-116 (167)
199 COG0329 DapA Dihydrodipicolina 28.9 1.1E+02 0.0023 24.2 4.3 28 11-38 99-126 (299)
200 PF01915 Glyco_hydro_3_C: Glyc 28.9 1.3E+02 0.0029 22.1 4.7 38 2-39 76-129 (227)
201 PRK06932 glycerate dehydrogena 28.9 82 0.0018 25.0 3.7 31 43-79 144-174 (314)
202 cd04120 Rab12 Rab12 subfamily. 28.8 95 0.002 22.8 3.8 45 7-54 68-113 (202)
203 cd01169 HMPP_kinase 4-amino-5- 28.5 2E+02 0.0044 21.0 5.6 39 49-88 2-40 (242)
204 cd04175 Rap1 Rap1 subgroup. T 28.3 89 0.0019 21.1 3.4 47 8-55 69-115 (164)
205 PRK08818 prephenate dehydrogen 28.2 35 0.00076 27.9 1.5 20 3-22 43-62 (370)
206 PRK06487 glycerate dehydrogena 28.1 89 0.0019 24.8 3.8 31 43-79 145-175 (317)
207 PRK02705 murD UDP-N-acetylmura 28.1 2.8E+02 0.006 22.7 6.8 65 8-76 65-136 (459)
208 COG0104 PurA Adenylosuccinate 28.0 44 0.00095 28.1 2.0 29 25-57 390-419 (430)
209 PRK08655 prephenate dehydrogen 27.3 2.4E+02 0.0052 23.4 6.3 17 6-22 53-69 (437)
210 smart00173 RAS Ras subfamily o 27.2 1.3E+02 0.0029 20.2 4.1 45 7-55 67-114 (164)
211 PRK14713 multifunctional hydro 27.2 1.6E+02 0.0035 25.0 5.4 67 46-115 29-95 (530)
212 PRK03372 ppnK inorganic polyph 27.2 35 0.00075 27.2 1.3 11 11-21 184-194 (306)
213 PRK02649 ppnK inorganic polyph 27.2 34 0.00075 27.2 1.2 19 11-29 180-202 (305)
214 cd04136 Rap_like Rap-like subf 27.0 89 0.0019 20.9 3.2 42 9-54 70-114 (163)
215 cd06152 YjgF_YER057c_UK114_lik 27.0 1.4E+02 0.003 19.9 4.1 38 83-123 12-49 (114)
216 PRK13608 diacylglycerol glucos 27.0 94 0.002 25.0 3.8 30 45-75 4-34 (391)
217 PRK09260 3-hydroxybutyryl-CoA 27.0 1.4E+02 0.0031 22.8 4.7 17 6-22 76-92 (288)
218 cd04115 Rab33B_Rab33A Rab33B/R 27.0 91 0.002 21.4 3.3 44 9-55 73-118 (170)
219 cd00286 Tubulin_FtsZ Tubulin/F 26.9 3.1E+02 0.0068 21.5 7.5 50 3-55 73-129 (328)
220 PF03720 UDPG_MGDP_dh_C: UDP-g 26.7 42 0.00091 22.0 1.4 20 5-24 60-81 (106)
221 PRK07168 bifunctional uroporph 26.7 48 0.0011 28.0 2.1 49 30-86 237-285 (474)
222 PRK04208 rbcL ribulose bisopho 26.6 1.5E+02 0.0032 25.3 4.9 69 6-79 310-392 (468)
223 cd01868 Rab11_like Rab11-like. 26.5 1.3E+02 0.0027 20.3 3.9 46 7-55 71-117 (165)
224 PRK07502 cyclohexadienyl dehyd 26.5 1.5E+02 0.0032 23.0 4.7 26 6-33 61-86 (307)
225 COG1086 Predicted nucleoside-d 26.5 72 0.0016 27.9 3.1 31 42-77 246-276 (588)
226 PF10503 Esterase_phd: Esteras 26.4 1.2E+02 0.0026 22.9 4.1 48 7-55 39-105 (220)
227 PRK01185 ppnK inorganic polyph 26.4 33 0.00072 26.8 1.0 18 11-28 157-178 (271)
228 COG0386 BtuE Glutathione perox 26.4 2.6E+02 0.0057 20.4 5.9 38 42-79 21-61 (162)
229 PRK01911 ppnK inorganic polyph 26.4 29 0.00063 27.5 0.7 19 11-29 175-197 (292)
230 COG0059 IlvC Ketol-acid reduct 26.4 41 0.00089 27.3 1.5 32 42-79 14-45 (338)
231 PRK03501 ppnK inorganic polyph 26.2 37 0.00081 26.5 1.3 11 11-21 148-158 (264)
232 PF11288 DUF3089: Protein of u 26.2 1E+02 0.0022 23.3 3.6 35 31-69 81-115 (207)
233 PRK11126 2-succinyl-6-hydroxy- 26.2 56 0.0012 23.5 2.2 56 1-56 17-76 (242)
234 cd04156 ARLTS1 ARLTS1 subfamil 26.1 1.1E+02 0.0023 20.6 3.5 45 8-55 64-110 (160)
235 cd01865 Rab3 Rab3 subfamily. 26.1 93 0.002 21.2 3.2 46 7-55 69-115 (165)
236 cd04154 Arl2 Arl2 subfamily. 25.9 1.4E+02 0.003 20.5 4.1 46 7-55 77-124 (173)
237 cd04125 RabA_like RabA-like su 25.9 1.2E+02 0.0026 21.3 3.8 45 7-54 68-113 (188)
238 PF03807 F420_oxidored: NADP o 25.8 64 0.0014 20.1 2.2 19 5-23 55-73 (96)
239 PRK09107 acetolactate synthase 25.8 1.2E+02 0.0026 26.1 4.4 47 28-79 200-246 (595)
240 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 25.8 1.1E+02 0.0024 20.7 3.6 46 6-54 69-115 (166)
241 cd04121 Rab40 Rab40 subfamily. 25.7 1.2E+02 0.0026 21.9 3.8 68 9-79 76-145 (189)
242 PLN00223 ADP-ribosylation fact 25.6 1.5E+02 0.0034 20.9 4.4 45 8-55 81-127 (181)
243 PLN02577 hydroxymethylglutaryl 25.5 64 0.0014 27.3 2.6 35 20-57 326-361 (459)
244 TIGR01692 HIBADH 3-hydroxyisob 25.4 3.1E+02 0.0068 21.0 8.6 66 6-82 47-115 (288)
245 PRK14075 pnk inorganic polypho 25.4 40 0.00087 26.0 1.3 19 11-29 145-167 (256)
246 PRK04885 ppnK inorganic polyph 25.4 39 0.00084 26.4 1.2 11 11-21 147-157 (265)
247 PRK00561 ppnK inorganic polyph 25.4 39 0.00085 26.3 1.2 11 11-21 136-146 (259)
248 PLN02211 methyl indole-3-aceta 25.3 3E+02 0.0066 20.8 6.4 52 1-56 33-97 (273)
249 PRK13783 adenylosuccinate synt 25.2 97 0.0021 25.9 3.6 44 8-55 352-395 (404)
250 smart00174 RHO Rho (Ras homolo 25.2 58 0.0013 22.3 2.0 45 8-55 66-111 (174)
251 KOG4011 Transcription initiati 25.1 33 0.00072 27.7 0.8 17 21-37 133-149 (330)
252 PF06342 DUF1057: Alpha/beta h 25.1 2.8E+02 0.0061 22.2 6.0 58 56-117 43-100 (297)
253 cd01867 Rab8_Rab10_Rab13_like 25.1 1.4E+02 0.003 20.3 4.0 45 7-54 71-116 (167)
254 TIGR02717 AcCoA-syn-alpha acet 25.1 3.9E+02 0.0084 22.2 7.2 58 12-79 65-125 (447)
255 PTZ00431 pyrroline carboxylate 25.0 3.1E+02 0.0067 20.8 7.3 25 7-37 53-77 (260)
256 cd04142 RRP22 RRP22 subfamily. 24.8 1.2E+02 0.0025 22.0 3.7 45 7-54 76-124 (198)
257 cd01173 pyridoxal_pyridoxamine 24.7 1.3E+02 0.0028 22.4 4.0 36 69-106 21-56 (254)
258 TIGR03101 hydr2_PEP hydrolase, 24.7 1.7E+02 0.0038 22.6 4.8 50 2-56 45-109 (266)
259 PRK02645 ppnK inorganic polyph 24.7 40 0.00087 26.7 1.2 19 11-29 178-200 (305)
260 cd04152 Arl4_Arl7 Arl4/Arl7 su 24.7 1E+02 0.0022 21.7 3.2 43 9-55 73-118 (183)
261 cd04127 Rab27A Rab27a subfamil 24.7 1.4E+02 0.003 20.5 3.9 45 7-54 82-128 (180)
262 cd01888 eIF2_gamma eIF2-gamma 24.6 2.1E+02 0.0046 20.6 5.0 46 5-54 100-145 (203)
263 PRK00961 H(2)-dependent methyl 24.6 1E+02 0.0022 24.9 3.4 33 6-39 136-168 (342)
264 cd00876 Ras Ras family. The R 24.5 1.6E+02 0.0034 19.4 4.1 48 5-55 64-113 (160)
265 cd04130 Wrch_1 Wrch-1 subfamil 24.5 82 0.0018 21.7 2.7 43 9-54 69-112 (173)
266 PRK03708 ppnK inorganic polyph 24.4 41 0.00089 26.3 1.2 19 11-29 164-186 (277)
267 TIGR01505 tartro_sem_red 2-hyd 24.3 3.3E+02 0.0071 20.8 8.7 24 6-34 50-73 (291)
268 cd01863 Rab18 Rab18 subfamily. 24.3 1.3E+02 0.0028 20.2 3.6 45 7-54 68-114 (161)
269 KOG4142 Phospholipid methyltra 24.2 29 0.00062 25.7 0.3 31 16-55 145-175 (208)
270 PRK02231 ppnK inorganic polyph 24.1 44 0.00094 26.2 1.3 19 11-29 155-177 (272)
271 PTZ00344 pyridoxal kinase; Pro 24.0 3.2E+02 0.007 21.1 6.2 59 47-112 5-68 (296)
272 PRK04539 ppnK inorganic polyph 23.9 43 0.00094 26.5 1.3 18 11-28 180-201 (296)
273 PRK10499 PTS system N,N'-diace 23.8 1.7E+02 0.0038 19.3 4.1 43 27-72 57-101 (106)
274 COG0028 IlvB Thiamine pyrophos 23.7 1.3E+02 0.0029 25.9 4.2 57 17-80 175-233 (550)
275 TIGR00521 coaBC_dfp phosphopan 23.6 4.2E+02 0.0091 21.8 7.6 49 5-54 134-193 (390)
276 TIGR00976 /NonD putative hydro 23.4 65 0.0014 27.3 2.3 44 10-55 49-105 (550)
277 PLN02645 phosphoglycolate phos 23.3 1.9E+02 0.0042 22.6 4.8 37 11-56 34-70 (311)
278 PF00743 FMO-like: Flavin-bind 23.3 31 0.00067 29.5 0.3 44 11-55 138-192 (531)
279 TIGR01465 cobM_cbiF precorrin- 23.3 1.5E+02 0.0033 21.7 4.1 15 5-19 18-32 (229)
280 PF00071 Ras: Ras family; Int 23.3 63 0.0014 21.8 1.9 67 7-76 67-136 (162)
281 PRK02155 ppnK NAD(+)/NADH kina 23.2 43 0.00094 26.4 1.1 20 11-30 175-198 (291)
282 PRK01231 ppnK inorganic polyph 23.0 43 0.00094 26.4 1.1 18 11-28 174-195 (295)
283 PRK15059 tartronate semialdehy 23.0 3.6E+02 0.0079 20.9 8.5 95 7-118 51-153 (292)
284 TIGR01915 npdG NADPH-dependent 23.0 1.8E+02 0.0039 21.3 4.4 17 6-22 63-79 (219)
285 PF08237 PE-PPE: PE-PPE domain 22.8 1.7E+02 0.0037 22.1 4.3 49 19-72 22-71 (225)
286 PF00574 CLP_protease: Clp pro 22.7 2.4E+02 0.0053 19.9 5.0 72 2-79 6-78 (182)
287 PRK07066 3-hydroxybutyryl-CoA 22.7 2.1E+02 0.0046 22.9 5.0 96 6-117 78-175 (321)
288 PF06283 ThuA: Trehalose utili 22.7 1.2E+02 0.0026 22.2 3.4 43 7-55 48-90 (217)
289 cd01080 NAD_bind_m-THF_DH_Cycl 22.7 1.3E+02 0.0029 21.6 3.5 42 26-68 24-65 (168)
290 cd01866 Rab2 Rab2 subfamily. 22.6 1.6E+02 0.0035 20.1 3.9 70 7-79 72-144 (168)
291 PRK05756 pyridoxamine kinase; 22.5 2.9E+02 0.0063 21.1 5.6 33 69-104 23-56 (286)
292 KOG1637 Threonyl-tRNA syntheta 22.4 93 0.002 26.8 2.9 70 7-79 298-373 (560)
293 PF08540 HMG_CoA_synt_C: Hydro 22.4 45 0.00098 26.3 1.1 35 21-57 157-192 (282)
294 PRK01368 murD UDP-N-acetylmura 22.4 3.7E+02 0.008 22.4 6.5 62 8-76 60-131 (454)
295 PRK04761 ppnK inorganic polyph 22.4 49 0.0011 25.6 1.2 19 11-29 133-155 (246)
296 cd01862 Rab7 Rab7 subfamily. 22.3 1.6E+02 0.0035 19.8 3.9 47 6-55 67-118 (172)
297 PLN02978 pyridoxal kinase 22.3 1.9E+02 0.0041 22.7 4.6 42 45-89 13-56 (308)
298 PRK11790 D-3-phosphoglycerate 22.3 1.4E+02 0.003 24.7 3.9 32 42-79 147-178 (409)
299 COG1927 Mtd Coenzyme F420-depe 22.3 1.3E+02 0.0027 23.4 3.4 55 11-80 60-116 (277)
300 KOG2178 Predicted sugar kinase 22.2 46 0.001 27.7 1.1 17 10-26 284-300 (409)
301 PRK14194 bifunctional 5,10-met 22.1 1.7E+02 0.0037 23.4 4.3 35 27-61 140-174 (301)
302 PRK06436 glycerate dehydrogena 22.0 1.6E+02 0.0035 23.2 4.2 32 42-79 118-149 (303)
303 cd06154 YjgF_YER057c_UK114_lik 21.9 2E+02 0.0042 19.1 4.1 45 75-123 15-59 (119)
304 PHA03200 uracil DNA glycosylas 21.9 87 0.0019 24.5 2.5 28 10-38 98-125 (255)
305 PRK14514 ATP-dependent Clp pro 21.8 3.6E+02 0.0079 20.5 5.9 50 2-55 44-93 (221)
306 PLN02928 oxidoreductase family 21.8 1.5E+02 0.0033 23.8 4.0 32 42-79 155-186 (347)
307 cd04171 SelB SelB subfamily. 21.7 2.5E+02 0.0054 18.5 5.2 45 5-54 68-112 (164)
308 PLN02733 phosphatidylcholine-s 21.7 2.1E+02 0.0047 24.0 5.0 51 2-56 110-172 (440)
309 cd01883 EF1_alpha Eukaryotic e 21.6 2.2E+02 0.0048 20.8 4.7 70 3-76 92-175 (219)
310 cd06570 GH20_chitobiase-like_1 21.6 3.6E+02 0.0079 21.4 6.1 92 25-120 15-145 (311)
311 PF13460 NAD_binding_10: NADH( 21.4 2.2E+02 0.0049 19.5 4.5 48 4-56 53-100 (183)
312 PF00590 TP_methylase: Tetrapy 21.3 1.7E+02 0.0038 20.9 4.0 16 4-19 18-33 (210)
313 PRK09259 putative oxalyl-CoA d 21.3 1.5E+02 0.0034 25.2 4.2 46 27-79 200-245 (569)
314 PTZ00099 rab6; Provisional 21.3 1.2E+02 0.0027 21.5 3.2 44 8-54 49-93 (176)
315 TIGR01470 cysG_Nterm siroheme 21.3 1.7E+02 0.0036 21.7 3.9 30 43-78 6-35 (205)
316 cd00878 Arf_Arl Arf (ADP-ribos 21.2 2.5E+02 0.0054 18.6 4.6 47 6-55 61-109 (158)
317 PRK12474 hypothetical protein; 21.2 1.9E+02 0.004 24.4 4.6 46 27-79 188-233 (518)
318 COG3340 PepE Peptidase E [Amin 21.1 2.1E+02 0.0046 22.0 4.4 52 25-79 12-66 (224)
319 PF00016 RuBisCO_large: Ribulo 21.0 2.5E+02 0.0054 22.6 5.0 66 7-79 165-246 (309)
320 PF07859 Abhydrolase_3: alpha/ 21.0 78 0.0017 22.4 2.0 58 6-65 21-87 (211)
321 TIGR00142 hycI hydrogenase mat 20.9 2.8E+02 0.006 19.1 4.8 31 92-123 114-144 (146)
322 TIGR01723 hmd_TIGR 5,10-methen 20.9 1.3E+02 0.0028 24.3 3.3 33 6-39 134-166 (340)
323 PF01488 Shikimate_DH: Shikima 20.9 67 0.0014 21.9 1.6 23 2-24 66-88 (135)
324 COG1440 CelA Phosphotransferas 20.8 1.6E+02 0.0035 19.8 3.3 51 4-64 41-93 (102)
325 KOG2648 Diphthamide biosynthes 20.8 2.3E+02 0.0049 24.1 4.9 37 43-79 263-300 (453)
326 CHL00073 chlN photochlorophyll 20.8 4.4E+02 0.0095 22.4 6.7 32 42-79 310-341 (457)
327 COG0757 AroQ 3-dehydroquinate 20.8 1.9E+02 0.0042 20.7 3.9 57 32-98 55-112 (146)
328 PRK10985 putative hydrolase; P 20.8 1.9E+02 0.0041 22.5 4.3 35 28-67 115-149 (324)
329 PRK12297 obgE GTPase CgtA; Rev 20.8 2.9E+02 0.0063 23.1 5.6 50 4-53 229-281 (424)
330 cd04132 Rho4_like Rho4-like su 20.6 90 0.002 21.7 2.3 44 8-54 69-113 (187)
331 TIGR02729 Obg_CgtA Obg family 20.5 2.2E+02 0.0048 22.7 4.7 51 4-54 228-281 (329)
332 smart00176 RAN Ran (Ras-relate 20.5 1.2E+02 0.0025 22.2 2.9 44 8-54 64-107 (200)
333 cd04106 Rab23_lke Rab23-like s 20.4 1.8E+02 0.0039 19.4 3.7 46 7-55 70-115 (162)
334 TIGR02853 spore_dpaA dipicolin 20.4 4.2E+02 0.0091 20.6 7.1 35 18-55 124-160 (287)
335 cd03110 Fer4_NifH_child This p 20.4 3.1E+02 0.0066 19.0 6.4 11 10-20 91-101 (179)
336 PF11056 UvsY: Recombination, 20.4 59 0.0013 22.8 1.2 10 28-37 114-123 (129)
337 TIGR00140 hupD hydrogenase exp 20.4 2.6E+02 0.0057 18.8 4.5 33 92-124 101-133 (134)
338 cd06578 HemD Uroporphyrinogen- 20.2 2.3E+02 0.0049 20.3 4.4 25 6-37 44-68 (239)
339 cd04122 Rab14 Rab14 subfamily. 20.2 1.8E+02 0.0038 19.7 3.7 46 6-54 69-115 (166)
340 PRK07586 hypothetical protein; 20.1 2E+02 0.0044 24.0 4.6 46 27-79 184-229 (514)
341 PRK02842 light-independent pro 20.1 5E+02 0.011 21.4 7.0 65 11-79 129-195 (427)
342 PRK10966 exonuclease subunit S 20.0 3.9E+02 0.0085 22.0 6.2 65 10-81 38-107 (407)
343 cd01979 Pchlide_reductase_N Pc 20.0 4.2E+02 0.0091 21.5 6.3 65 11-79 118-184 (396)
No 1
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=99.98 E-value=3.6e-32 Score=205.61 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=107.4
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC---CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeec
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP---NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVN 80 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~---~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~ 80 (128)
.+.+++++||++||+|||||++|||.|||+|||++++. +.|.+||++++++||+.+|.+++.+||+++..++++++|
T Consensus 83 ~l~~~v~~ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~g~ra~~~LR~vl~~l~a~v~p 162 (219)
T TIGR02690 83 ELRQLSEWSEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQSFNAVNILRRLGRWMRMPTIP 162 (219)
T ss_pred HHHHHHHhCCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHhHHHHHHHHHHHHHHCCCcccc
Confidence 46789999999999999999999999999999999852 369999999999995556899999999999999999998
Q ss_pred cceeeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 035766 81 KPEYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRAFTLRLQG 126 (128)
Q Consensus 81 ~~~~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~~~~~~ 126 (128)
. ++.++.. .+.||++|.+.|++.++++++++++|.+|++..+.
T Consensus 163 ~-~v~i~~a--~~~fd~~G~l~d~~~~~~l~~~l~~~~~~~~~~~~ 205 (219)
T TIGR02690 163 N-QSSVAKA--FDEFDEAGRMKPSDYYDRVVDVMEELTKFTLLTRA 205 (219)
T ss_pred c-hhhhhhh--HhhcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5 5666653 67799999999999999999999999999987653
No 2
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=99.95 E-value=6.4e-28 Score=179.11 Aligned_cols=118 Identities=13% Similarity=0.132 Sum_probs=103.6
Q ss_pred hhHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHH-HHHHHhhhhcCceeec
Q 035766 2 WLLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQ-YHLRQIGVYLDLHFVN 80 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~-~~L~~~l~~~g~~~~~ 80 (128)
+..+.++|++||+|||+|||||+++||.|||+|||+.. ..|.|||+++++++|..|+.+++ .+||.++.++|++++|
T Consensus 57 ~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~~--~~l~~K~v~iiat~G~~~~~~~~~~~lr~~l~~l~a~~~~ 134 (191)
T PRK10569 57 LKTFTEQLAQADGLIVATPVYKASFSGALKTLLDLLPE--RALEHKVVLPLATGGSVAHMLAVDYALKPVLSALKAQEIL 134 (191)
T ss_pred HHHHHHHHHHCCEEEEECCccCCCCCHHHHHHHHhCCh--hhhCCCEEEEEEecCCchhHHHHHHHHHHHHHHcCCeecC
Confidence 35688999999999999999999999999999999965 68999999999999888999999 7999999999999998
Q ss_pred cceeeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 035766 81 KPEYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRAFTLRL 124 (128)
Q Consensus 81 ~~~~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~~~~ 124 (128)
. .+++... ..+.||++|.+ |++++++|++++++|++++++-
T Consensus 135 ~-~~~~~~~-~~~~~d~~~~~-d~~~~~rl~~~~~~~~~~~~~~ 175 (191)
T PRK10569 135 H-GVFADDS-QVIDYHHQPQF-TPNLQTRLDEALETFWQALHRR 175 (191)
T ss_pred c-eEEEech-hhhcccccccc-CHHHHHHHHHHHHHHHHHHccC
Confidence 5 4444442 23459999999 9999999999999999988653
No 3
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=99.95 E-value=5.1e-28 Score=173.72 Aligned_cols=112 Identities=51% Similarity=0.843 Sum_probs=98.7
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee-cccee
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV-NKPEY 84 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~-~~~~~ 84 (128)
.++|.+||.|||+||+||+++|+.|||+|||+++ +|.|||++++|++| +||.+++.+||++..++.|+|. ..|++
T Consensus 81 ~~ki~~aD~ivFvtPqYN~gypA~LKNAlD~lyh---eW~gKPalivSyGG-hGGg~c~~qL~~v~~fLkm~vai~~P~~ 156 (199)
T KOG4530|consen 81 RQKILEADSIVFVTPQYNFGYPAPLKNALDWLYH---EWAGKPALIVSYGG-HGGGRCQYQLRQVGVFLKMHVAINKPEF 156 (199)
T ss_pred HHHHhhcceEEEecccccCCCchHHHHHHHHhhh---hhcCCceEEEEecC-CCCchHHHHHHHHHhhheeeeeccCccc
Confidence 3578999999999999999999999999999996 89999999999997 8899999999999999999954 55677
Q ss_pred eeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 035766 85 FLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRAFT 121 (128)
Q Consensus 85 ~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~ 121 (128)
.++.++..+.|+++|...+++..+++++++..+..|-
T Consensus 157 Tlp~~~~pq~~v~~~~~~~~h~~E~lk~~~~~~q~fe 193 (199)
T KOG4530|consen 157 TLPAFQPPQKFVAEGNLVDEHTKERLKQVLLSLQAFE 193 (199)
T ss_pred ccccccCchhccCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 7777677899999999999999999988875555443
No 4
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=99.95 E-value=1.5e-27 Score=173.69 Aligned_cols=112 Identities=22% Similarity=0.244 Sum_probs=98.8
Q ss_pred hHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHH-HHHHHhhhhcCceeecc
Q 035766 3 LLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQ-YHLRQIGVYLDLHFVNK 81 (128)
Q Consensus 3 ~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~-~~L~~~l~~~g~~~~~~ 81 (128)
..++++|.+||++||+|||||+++|+.|||+|||++. ..|.+||+++++++|..++.++. .+||.+++++|+++++
T Consensus 57 ~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~--~~l~~K~v~~~~~gg~~~~~~~~~~~l~~~l~~l~~~~~~- 133 (171)
T TIGR03567 57 KAATAQVAQADGVVVATPVYKASYSGVLKALLDLLPQ--RALRGKVVLPIATGGSIAHLLAIDYALKPVLSALGARHIL- 133 (171)
T ss_pred HHHHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCCh--hhhCCCEEEEEEcCCchhHHHHHHHHHHHHHHHcCCcccc-
Confidence 5688999999999999999999999999999999975 68999999999988777777776 5899999999998765
Q ss_pred ceeeeccCCCCCccCCCCCC-CCHHHHHHHHHHHHHHHH
Q 035766 82 PEYFLNAFQPPAKFDSDGNL-IDEESKEKLKAVLLALRA 119 (128)
Q Consensus 82 ~~~~i~~~~~~~~fd~~g~l-~~~~~~~~l~~~~~~l~~ 119 (128)
+.++++.. ...||++|.+ .|++++++|++++++|+.
T Consensus 134 ~~v~~~~~--~~~~d~~g~~~~d~~~~~~l~~~~~~~~~ 170 (171)
T TIGR03567 134 PGVFALDS--QIERDEDGTLQLDEEIKERLDEALEDLVQ 170 (171)
T ss_pred ceEEEEhh--HhccccCCccccCHHHHHHHHHHHHHHHh
Confidence 46777753 6779999999 899999999999999864
No 5
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=99.95 E-value=3.7e-27 Score=171.85 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=98.4
Q ss_pred hHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecC-CCChHHHHHHHHHhhhhcCceeecc
Q 035766 3 LLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAG-GSGGARAQYHLRQIGVYLDLHFVNK 81 (128)
Q Consensus 3 ~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg-~~gg~~a~~~L~~~l~~~g~~~~~~ 81 (128)
..+.++|.+||+|||+|||||+++|+.|||+|||+++ ..|.|||+++++++| ..++.....+||.++.++|+++++.
T Consensus 60 ~~~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~--~~l~~K~~~~v~~~g~~~~~~~~~~~l~~~~~~l~~~~~~~ 137 (174)
T TIGR03566 60 ERILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVDP--NALIGKPVLLAATGGSERHALMVEHQLRPLFGFFQALTLPT 137 (174)
T ss_pred HHHHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCH--hHhCCCEEEEEEecCCccchHHHHHHHHHHHHHhCcccccc
Confidence 3678999999999999999999999999999999986 689999999999984 4455666778999999999999973
Q ss_pred ceeeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 035766 82 PEYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRAFTLR 123 (128)
Q Consensus 82 ~~~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~~~ 123 (128)
.+++. ...|+ +|.+.|++.+++|++++++|++++++
T Consensus 138 -~~~~~----~~~~~-~g~l~d~~~~~~l~~~~~~~~~~~~~ 173 (174)
T TIGR03566 138 -GVYAS----DADFA-DYRLASEALRARIALAVDRAAPLLAA 173 (174)
T ss_pred -eEEEE----hhhhc-cccccCHHHHHHHHHHHHHHHHHhcc
Confidence 55543 46685 89999999999999999999998864
No 6
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=99.94 E-value=1.7e-26 Score=170.37 Aligned_cols=112 Identities=26% Similarity=0.391 Sum_probs=91.5
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CCCChHHHHHHHHHhhhhcCceeeccc
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GGSGGARAQYHLRQIGVYLDLHFVNKP 82 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~~~g~~~~~~~ 82 (128)
.+.++|++||++||+|||||++|||.|||+|||+++ ..|.+||++++++| |..|+.+++.+||.+++++++.++|.+
T Consensus 60 ~~~~~i~~aD~li~~tPeYn~s~pg~lKnaiD~l~~--~~~~~Kpv~~~~~s~g~~~~~~a~~~Lr~vl~~~~~~~~~~~ 137 (184)
T COG0431 60 ALREAIAAADGLIIATPEYNGSYPGALKNAIDWLSR--EALGGKPVLLLGTSGGGAGGLRAQNQLRPVLSFLGARVIPAG 137 (184)
T ss_pred HHHHHHHhCCEEEEECCccCCCCCHHHHHHHHhCCH--hHhCCCcEEEEecCCCchhHHHHHHHHHHHHHhcCceecccc
Confidence 467899999999999999999999999999999998 47999999999999 778899999999999999999999753
Q ss_pred eeeeccCCCCCccCCCCCCC----CHHHHHHHHHHHHHHHHHHH
Q 035766 83 EYFLNAFQPPAKFDSDGNLI----DEESKEKLKAVLLALRAFTL 122 (128)
Q Consensus 83 ~~~i~~~~~~~~fd~~g~l~----~~~~~~~l~~~~~~l~~~~~ 122 (128)
+.. ....|++++... .++..++++++++++.....
T Consensus 138 -v~~----~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (184)
T COG0431 138 -VFA----ADLDFADNGNGVDEEAGERLVARLEELLKNFLQLLG 176 (184)
T ss_pred -hhh----hhhccccccccccccchHHHHHHHHHHHHHHHHHhh
Confidence 221 246666544443 35566777777777666553
No 7
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=99.82 E-value=1.1e-19 Score=128.87 Aligned_cols=83 Identities=30% Similarity=0.375 Sum_probs=73.0
Q ss_pred hhHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhc---CCCCcCCCCeEEEEeec-CCCChHHHHHHHHHhhhhcCce
Q 035766 2 WLLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWAS---RPPNVWADKAAAIVSAA-GGSGGARAQYHLRQIGVYLDLH 77 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~---~~~~~~~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~~~g~~ 77 (128)
+..+++++.+||++|++||+|++++|+.|||+|||+. . ..|++|++++++++ +..|+..+..+|+.++..+|+.
T Consensus 61 ~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~--~~~~~K~~~~i~~~g~~~g~~~~~~~l~~~~~~~~~~ 138 (152)
T PF03358_consen 61 VQELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFR--RALRGKPVAIIAVGGGRRGGLRALEQLRQILDYLGMI 138 (152)
T ss_dssp HHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHT--TTTTTSEEEEEEEESSSSTTHHHHHHHHHHHHHTTBE
T ss_pred HHHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhccccc--cccCCCEEEEEEEecCCcHHHHHHHHHHHHHHHCCCE
Confidence 3568999999999999999999999999999999997 4 69999999999999 5578889999999999999999
Q ss_pred eeccceeee
Q 035766 78 FVNKPEYFL 86 (128)
Q Consensus 78 ~~~~~~~~i 86 (128)
++|...+.+
T Consensus 139 ~~~~~~~~~ 147 (152)
T PF03358_consen 139 VVPSGVFAV 147 (152)
T ss_dssp EECCSEEEE
T ss_pred EcCCcEEEE
Confidence 997534444
No 8
>PRK13556 azoreductase; Provisional
Probab=99.79 E-value=1.7e-18 Score=129.41 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=78.8
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-----------CcCCCCeEEEEeec-CCC-----ChH-HHHH
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-----------NVWADKAAAIVSAA-GGS-----GGA-RAQY 65 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-----------~~~~~Kp~~~v~~s-g~~-----gg~-~a~~ 65 (128)
.+.++|++||.|||++|+||+++|+.|||+|||+.+++ +.+.+|++.+++++ |.+ ++. .+..
T Consensus 82 ~~~~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~~~ 161 (208)
T PRK13556 82 KYLNQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMAVK 161 (208)
T ss_pred HHHHHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhccHH
Confidence 56799999999999999999999999999999999763 35899999999998 433 122 5567
Q ss_pred HHHHhhhhcCceeeccceeeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 035766 66 HLRQIGVYLDLHFVNKPEYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRAFTL 122 (128)
Q Consensus 66 ~L~~~l~~~g~~~~~~~~~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~~ 122 (128)
+++.+++++|+.+++ .+.+.. ...++ +...+.+++..+++.+.++
T Consensus 162 ~l~~il~~~G~~~~~--~v~~~~---~~~~~-------~~~~~~~~~a~~~~~~~~~ 206 (208)
T PRK13556 162 YVASMMGFFGVTNME--TVVIEG---HNQFP-------DKAEEIITAGLEEAAKVAA 206 (208)
T ss_pred HHHHHHHhcCCCcee--EEEEeh---hhcCh-------hHHHHHHHHHHHHHHHHHh
Confidence 999999999999884 344432 23332 2344455555555555443
No 9
>PRK13555 azoreductase; Provisional
Probab=99.72 E-value=1.3e-16 Score=119.91 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=64.2
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-----------CcCCCCeEEEEeec-CCCCh------HHHHH
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-----------NVWADKAAAIVSAA-GGSGG------ARAQY 65 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-----------~~~~~Kp~~~v~~s-g~~gg------~~a~~ 65 (128)
.+.+++++||.|||++|+||+++|+.|||+|||+.+++ +.+.||++.+++++ |.+.+ .....
T Consensus 82 ~~~~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~~~ 161 (208)
T PRK13555 82 QYLNQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMAVN 161 (208)
T ss_pred HHHHHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhHHH
Confidence 46789999999999999999999999999999998753 45899999999998 54433 22447
Q ss_pred HHHHhhhhcCceee
Q 035766 66 HLRQIGVYLDLHFV 79 (128)
Q Consensus 66 ~L~~~l~~~g~~~~ 79 (128)
+++.+|+++|+..+
T Consensus 162 yl~~il~~~Gi~~v 175 (208)
T PRK13555 162 YVTTVLGFWGITNP 175 (208)
T ss_pred HHHHHHHhcCCCce
Confidence 89999999999765
No 10
>PRK00170 azoreductase; Reviewed
Probab=99.72 E-value=1e-16 Score=118.30 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=65.0
Q ss_pred hHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-----------CcCCCCeEEEEeecCCC-C-h--HHHHHHH
Q 035766 3 LLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-----------NVWADKAAAIVSAAGGS-G-G--ARAQYHL 67 (128)
Q Consensus 3 ~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-----------~~~~~Kp~~~v~~sg~~-g-g--~~a~~~L 67 (128)
..++++|.+||+|||+||+||+++|+.|||+|||+.++. +.|.||++.+++++|+. + + ..+..++
T Consensus 78 ~~l~~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~ 157 (201)
T PRK00170 78 DELLEEFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYL 157 (201)
T ss_pred HHHHHHHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHH
Confidence 356899999999999999999999999999999997532 35899999999998542 1 1 4567889
Q ss_pred HHhhhhcCceee
Q 035766 68 RQIGVYLDLHFV 79 (128)
Q Consensus 68 ~~~l~~~g~~~~ 79 (128)
+.++.++|+..+
T Consensus 158 ~~~~~~~G~~~~ 169 (201)
T PRK00170 158 KTFLGFIGITDV 169 (201)
T ss_pred HHHHHhcCCCce
Confidence 999999999877
No 11
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=99.70 E-value=1.9e-16 Score=117.93 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=70.0
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-----------CcCCCCeEEEEeec-CCCCh-----HHHHHH
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-----------NVWADKAAAIVSAA-GGSGG-----ARAQYH 66 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-----------~~~~~Kp~~~v~~s-g~~gg-----~~a~~~ 66 (128)
.+.+.+.+||.+||++|+||++||+.|||+||++.+++ +.+.||+|.+++++ |.++. ..+..+
T Consensus 80 ~l~~ef~aAD~vVi~~PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~Y 159 (202)
T COG1182 80 KLLEEFLAADKVVIAAPMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPY 159 (202)
T ss_pred HHHHHHHhcCeEEEEecccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHH
Confidence 57899999999999999999999999999999999875 77899999999999 55543 457789
Q ss_pred HHHhhhhcCceeeccceeee
Q 035766 67 LRQIGVYLDLHFVNKPEYFL 86 (128)
Q Consensus 67 L~~~l~~~g~~~~~~~~~~i 86 (128)
||.+|+++|+..+. .+.+
T Consensus 160 Lr~ilgF~Gitd~~--~v~~ 177 (202)
T COG1182 160 LRTILGFLGITDVE--FVFA 177 (202)
T ss_pred HHHHhhhcCCCcce--EEEE
Confidence 99999999998873 4544
No 12
>PRK01355 azoreductase; Reviewed
Probab=99.68 E-value=7.2e-16 Score=114.70 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=66.0
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC--------------CcCCCCeEEEEeecCCCC----hHHHHH
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP--------------NVWADKAAAIVSAAGGSG----GARAQY 65 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~--------------~~~~~Kp~~~v~~sg~~g----g~~a~~ 65 (128)
.+.++|.+||+|||+||+||+++|+.|||+|||+.+++ +.+.+|++.+++++|... ...+..
T Consensus 70 ~~~~~l~~AD~iV~~sP~y~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~ 149 (199)
T PRK01355 70 KYINQLKSVDKVVISCPMTNFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTN 149 (199)
T ss_pred HHHHHHHhCCEEEEEcCccccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHH
Confidence 47899999999999999999999999999999986532 247899999999985322 134567
Q ss_pred HHHHhhhhcCceeeccceeeec
Q 035766 66 HLRQIGVYLDLHFVNKPEYFLN 87 (128)
Q Consensus 66 ~L~~~l~~~g~~~~~~~~~~i~ 87 (128)
+++.++.++|+..+. .+.+.
T Consensus 150 ~l~~~~~~~G~~~~~--~i~~~ 169 (199)
T PRK01355 150 YLEGTWEFLGAKVVD--SILLA 169 (199)
T ss_pred HHHHHHHhcCCCcee--EEEEe
Confidence 899999999998773 44443
No 13
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.63 E-value=1.4e-14 Score=107.83 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=90.4
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC--CcCCCCeEEEEeecC-CCChH-HHHHHHHHhhhhcCceeecc
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP--NVWADKAAAIVSAAG-GSGGA-RAQYHLRQIGVYLDLHFVNK 81 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~--~~~~~Kp~~~v~~sg-~~gg~-~a~~~L~~~l~~~g~~~~~~ 81 (128)
.+.+.+||+|||+||+|++++|+.+|+++|++.+.. ..|.+|++++++++| .+|+. ..+.+++.++...||.+++.
T Consensus 64 ~~~l~~aD~ii~gsPty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~ 143 (200)
T PRK03767 64 PDELADYDAIIFGTPTRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGL 143 (200)
T ss_pred HHHHHhCCEEEEEecccCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCC
Confidence 578999999999999999999999999999997532 468899999999994 44555 88899999999999999964
Q ss_pred ceeeeccCC---------CCCc---cCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhc
Q 035766 82 PEYFLNAFQ---------PPAK---FDSDGN-LIDEESKEKLKAVLLALRAFTLRLQG 126 (128)
Q Consensus 82 ~~~~i~~~~---------~~~~---fd~~g~-l~~~~~~~~l~~~~~~l~~~~~~~~~ 126 (128)
+ +...... .... .+.++. .-+++..+..+.+.+++.+.+.+++.
T Consensus 144 ~-~~~~~~~~~~~~~~g~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~~ 200 (200)
T PRK03767 144 P-YAFQGQMDVDEVTGGSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLAG 200 (200)
T ss_pred C-CccccccccccccCCcccceeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2 2221100 0111 111222 22567888899999999999998863
No 14
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.58 E-value=6.5e-14 Score=104.24 Aligned_cols=117 Identities=10% Similarity=0.055 Sum_probs=86.7
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC--CcCCCCeEEEEeecC-CCChH-HHHHHHHHhhhhcCceeeccc
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP--NVWADKAAAIVSAAG-GSGGA-RAQYHLRQIGVYLDLHFVNKP 82 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~--~~~~~Kp~~~v~~sg-~~gg~-~a~~~L~~~l~~~g~~~~~~~ 82 (128)
+.+.+||+|||+||+|++++|+.+|+++|++.+.. ..|.|||+++.+++| .+|+. .++..++..+...||.+++.|
T Consensus 64 ~~l~~aD~ii~GSPty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~~ 143 (197)
T TIGR01755 64 QELADYDAIIFGTPTRFGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPLP 143 (197)
T ss_pred HHHHHCCEEEEEecccccCccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCCC
Confidence 67899999999999999999999999999997532 478999999999994 44665 788899999999999999753
Q ss_pred eeee--------ccCCCCCcc---C--CCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 035766 83 EYFL--------NAFQPPAKF---D--SDGNLIDEESKEKLKAVLLALRAFTLRL 124 (128)
Q Consensus 83 ~~~i--------~~~~~~~~f---d--~~g~l~~~~~~~~l~~~~~~l~~~~~~~ 124 (128)
...- ........+ + ..+.+ ++..++..+.+.++|.+.+.++
T Consensus 144 ~~~~~~~~~~~~~gg~~~G~~~~~~~~~~~~p-~~~d~~~a~~~g~r~a~~a~~l 197 (197)
T TIGR01755 144 YAAQEQMGVDEVRGGSPYGATTIAGGDGSRQP-SAEELDIARYQGRHVAGLAAKL 197 (197)
T ss_pred cccccccccccccCCCCcceeeEcCCCCCCCc-CHHHHHHHHHHHHHHHHHHHhC
Confidence 2110 000001111 1 12223 5677888888999999888764
No 15
>PRK09739 hypothetical protein; Provisional
Probab=99.57 E-value=5.4e-14 Score=104.39 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=62.6
Q ss_pred hHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC------CcCCCCeEEEEeecCC-CCh-------HHHHHHHH
Q 035766 3 LLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP------NVWADKAAAIVSAAGG-SGG-------ARAQYHLR 68 (128)
Q Consensus 3 ~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~------~~~~~Kp~~~v~~sg~-~gg-------~~a~~~L~ 68 (128)
..+.+++.+||+|||+||+||+++|+.||++||++.+++ +.+.+|+++++.++|+ ... .....+++
T Consensus 71 ~~~~~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~ 150 (199)
T PRK09739 71 HQLYSELLEHDALVFVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLN 150 (199)
T ss_pred HHHHHHHHhCCEEEEECchhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHH
Confidence 467899999999999999999999999999999996542 4578999999998843 221 12345677
Q ss_pred -HhhhhcCceeec
Q 035766 69 -QIGVYLDLHFVN 80 (128)
Q Consensus 69 -~~l~~~g~~~~~ 80 (128)
.++.++|+..+.
T Consensus 151 ~~~~~~~G~~~~~ 163 (199)
T PRK09739 151 VGMASYLGIEDSD 163 (199)
T ss_pred hhhhhcCCccccc
Confidence 888999998763
No 16
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=99.40 E-value=4.8e-12 Score=93.50 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=63.3
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCC-------------CCcCCCCeEEEEeecCCC----C--------h
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRP-------------PNVWADKAAAIVSAAGGS----G--------G 60 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~-------------~~~~~~Kp~~~v~~sg~~----g--------g 60 (128)
.+++.+||.|||++|.||+++|+.||.+||++-+. .+.+.||++.++.++|+. + -
T Consensus 73 ~~~l~~AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~ 152 (199)
T PF02525_consen 73 IEELLWADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSM 152 (199)
T ss_dssp HHHHHHSSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHH
T ss_pred HHHHHHcCcceEeccceecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCCh
Confidence 58999999999999999999999999999999321 146789999999999433 1 1
Q ss_pred HHHHHHHHHhhhhcCceeeccceeeec
Q 035766 61 ARAQYHLRQIGVYLDLHFVNKPEYFLN 87 (128)
Q Consensus 61 ~~a~~~L~~~l~~~g~~~~~~~~~~i~ 87 (128)
.....+++.++.++|+..+. .+.+.
T Consensus 153 ~~~~~~~~~~~~~~G~~~~~--~~~~~ 177 (199)
T PF02525_consen 153 DHLLPYLRGILKFCGIKDVE--SFSFE 177 (199)
T ss_dssp HHHHHHHHHHHHHTTEEEEE--EEEEE
T ss_pred hhhHHHHHHHHHhCCCceee--EEEEe
Confidence 34556789999999999983 44443
No 17
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=99.33 E-value=6.2e-12 Score=94.00 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=64.0
Q ss_pred hhHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC---CcCCCCeEEEEeecCC-CChH-HHHHHHHHhhhhcCc
Q 035766 2 WLLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP---NVWADKAAAIVSAAGG-SGGA-RAQYHLRQIGVYLDL 76 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~---~~~~~Kp~~~v~~sg~-~gg~-~a~~~L~~~l~~~g~ 76 (128)
|..+++++.+||+|||+||.|++++|+++|++||+..++. ..|++|+.+.+.+++. .|+. .+...+...+...++
T Consensus 66 ~~~i~~~l~~aD~iI~gsPvy~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~ 145 (207)
T COG0655 66 MNEIYEKLLEADGIIFGSPVYFGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGM 145 (207)
T ss_pred HHHHHHHHHHCCEEEEeCCeecCCchHHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCC
Confidence 6779999999999999999999999999999999955432 4799999999988854 3443 256677777777788
Q ss_pred eeec
Q 035766 77 HFVN 80 (128)
Q Consensus 77 ~~~~ 80 (128)
.++.
T Consensus 146 ~~v~ 149 (207)
T COG0655 146 IVVG 149 (207)
T ss_pred eEec
Confidence 7774
No 18
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=99.22 E-value=2.5e-10 Score=84.54 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=58.9
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-------CcCCCCeEEEEeecCCCC------hHH------HHHH
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-------NVWADKAAAIVSAAGGSG------GAR------AQYH 66 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-------~~~~~Kp~~~v~~sg~~g------g~~------a~~~ 66 (128)
.+++.+||.|||.+|.||+++|+.||.+||.+...+ ..+.||++.++.++|+.. |.. -...
T Consensus 56 q~~l~~aD~iV~~fPl~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p 135 (184)
T PRK04930 56 QALLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRP 135 (184)
T ss_pred HHHHHhCCEEEEEcCccccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHH
Confidence 468999999999999999999999999999997542 358999999998874321 110 2234
Q ss_pred HHHhhhhcCceeec
Q 035766 67 LRQIGVYLDLHFVN 80 (128)
Q Consensus 67 L~~~l~~~g~~~~~ 80 (128)
++.++.++||..+|
T Consensus 136 ~~~~~~~~Gm~~~~ 149 (184)
T PRK04930 136 FELTAAMCRMHWLS 149 (184)
T ss_pred HHHHHHHcCCeEcC
Confidence 56778899999996
No 19
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=99.22 E-value=2.9e-10 Score=83.66 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=74.0
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-------CcCCCCeEEEEeecCCC------ChH----HHHHHHH
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-------NVWADKAAAIVSAAGGS------GGA----RAQYHLR 68 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-------~~~~~Kp~~~v~~sg~~------gg~----~a~~~L~ 68 (128)
.+++..||.||+.+|.||+++|+.||.+||.+-..+ ..++||++.++.++|+. +|. .....++
T Consensus 50 q~~l~~aD~iV~~fP~~w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~ 129 (176)
T PRK00871 50 QEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQ 129 (176)
T ss_pred HHHHHhCCEEEEEcChhhccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHH
Confidence 578999999999999999999999999999996532 45899999888877432 111 1245677
Q ss_pred HhhhhcCceeeccceeeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 035766 69 QIGVYLDLHFVNKPEYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRAFTL 122 (128)
Q Consensus 69 ~~l~~~g~~~~~~~~~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~~ 122 (128)
.++.++|+..++ | +.+.. .. ...+++..+.+++..+.+..+-+
T Consensus 130 ~~~~~~G~~~l~-~-~~~~~-----~~----~~~~~~~~~~~~~~~~~L~~~~~ 172 (176)
T PRK00871 130 ATALYCGLNWLP-P-FAMHC-----TF----ICDDETLEGQARHYKQRLLEWQE 172 (176)
T ss_pred HHHHHcCCeEcc-e-EEEee-----ec----cCCHHHHHHHHHHHHHHHHhHHH
Confidence 788999999985 3 33221 11 12345566666666666665443
No 20
>PRK06242 flavodoxin; Provisional
Probab=99.15 E-value=9.1e-10 Score=77.69 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=72.4
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeeccceeee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEYFL 86 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i 86 (128)
..+.++|.|||++|.|++++|+.+|++||.+. .+.+|+++++++.|..++. ....++..+...|+.++. .+.+
T Consensus 39 ~~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~----~~~~k~~~~f~t~g~~~~~-~~~~l~~~l~~~g~~~~~--~~~~ 111 (150)
T PRK06242 39 EDLSEYDLIGFGSGIYFGKFHKSLLKLIEKLP----PVSGKKAFIFSTSGLPFLK-YHKALKKKLKEKGFEIVG--EFSC 111 (150)
T ss_pred ccHhHCCEEEEeCchhcCCcCHHHHHHHHhhh----hhcCCeEEEEECCCCCcch-HHHHHHHHHHHCCCEEEE--EEec
Confidence 35789999999999999999999999999984 4689999999998554332 267888889999999884 3443
Q ss_pred ccCCCCCccCC--------CCCCCCHHHHHHHHHHHHHHH
Q 035766 87 NAFQPPAKFDS--------DGNLIDEESKEKLKAVLLALR 118 (128)
Q Consensus 87 ~~~~~~~~fd~--------~g~l~~~~~~~~l~~~~~~l~ 118 (128)
.. .+.+.. ++++ +++..+.+.++.++++
T Consensus 112 ~g---~~~~~~~~~~~~~~~~~p-~~~d~~~~~~~gk~l~ 147 (150)
T PRK06242 112 KG---FDTFGPFKLIGGINKGHP-NEKDLENAKEFAENLK 147 (150)
T ss_pred CC---cccccchhhcCCccCCCc-CHHHHHHHHHHHHHHh
Confidence 32 122221 2333 3455666666666654
No 21
>PRK05569 flavodoxin; Provisional
Probab=99.03 E-value=7.4e-09 Score=72.48 Aligned_cols=95 Identities=11% Similarity=0.028 Sum_probs=71.1
Q ss_pred HHHHhcCeEEEEcccCCCCCc--HHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeecccee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQ--GPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEY 84 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~--~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~ 84 (128)
..+.++|+|||+||.|+++++ +.++.++|.+.. ..+.||+++++++.|..++ .+...++..+...|+.++. .+
T Consensus 44 ~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~--~~~~~K~v~~f~t~g~~~~-~~~~~~~~~l~~~g~~~~~--~~ 118 (141)
T PRK05569 44 EDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKL--TPNENKKCILFGSYGWDNG-EFMKLWKDRMKDYGFNVIG--DL 118 (141)
T ss_pred HHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhc--cCcCCCEEEEEeCCCCCCC-cHHHHHHHHHHHCCCeEee--eE
Confidence 468899999999999999863 689999999964 3578999999999865432 3566788888888988873 34
Q ss_pred eeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHH
Q 035766 85 FLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALR 118 (128)
Q Consensus 85 ~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~ 118 (128)
.+. |. -+++..+++.++.+++.
T Consensus 119 ~~~-----------~~-p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 119 AVN-----------ES-PNKEELNSAKELGKKLA 140 (141)
T ss_pred EEc-----------cC-CCHHHHHHHHHHHHHHh
Confidence 332 22 24677777777777664
No 22
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=98.89 E-value=4.6e-08 Score=67.74 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=70.4
Q ss_pred HHHHhcCeEEEEcccCCCC-Cc-HHHHHHHHhhcCCCCcCCCCeEEEEeecCCCC-hHHHHHHHHHhhhhcCceeeccce
Q 035766 7 NTFLEFICFHLLTDLFSSF-VQ-GPLKNAIDWASRPPNVWADKAAAIVSAAGGSG-GARAQYHLRQIGVYLDLHFVNKPE 83 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~-i~-~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~g-g~~a~~~L~~~l~~~g~~~~~~~~ 83 (128)
..+.++|.||++||.|+++ +| +.++.++|++.. ..+.||++++.+++|..+ ...+...++..|..+|+.++.. .
T Consensus 41 ~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~--~~~~gk~~~vfgt~g~~~~f~~~~~~~~~~l~~~g~~~v~~-~ 117 (140)
T TIGR01753 41 EDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELED--IDLGGKKVALFGSGDWGYEFCEAVDDWEERLKEAGATIIAE-G 117 (140)
T ss_pred HHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhh--CCCCCCEEEEEecCCCCchhhHHHHHHHHHHHHCCCEEecC-C
Confidence 4678899999999999976 66 799999999964 358999999999875432 1467788899999999988742 2
Q ss_pred eeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHH
Q 035766 84 YFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLAL 117 (128)
Q Consensus 84 ~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l 117 (128)
+.+ ++.+ +++..++++++.+++
T Consensus 118 ~~~-----------~~~p-~~~~~~~~~~~~~~l 139 (140)
T TIGR01753 118 LKV-----------DGDP-EEEDLDKCREFAKDL 139 (140)
T ss_pred eee-----------ecCC-CHHHHHHHHHHHHHh
Confidence 221 2223 346666677766654
No 23
>PRK05568 flavodoxin; Provisional
Probab=98.86 E-value=5.7e-08 Score=67.95 Aligned_cols=95 Identities=17% Similarity=0.076 Sum_probs=70.4
Q ss_pred HHHHhcCeEEEEcccCCCCCc--HHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeecccee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQ--GPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEY 84 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~--~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~ 84 (128)
..+.++|+|||+||.|+++++ +.++.++|.+. ..+.+|++++++++|..+ ..+...+...++.+|..++.. .+
T Consensus 44 ~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~---~~~~~k~~~~f~t~G~~~-~~~~~~~~~~l~~~g~~~~~~-~~ 118 (142)
T PRK05568 44 DDVKGADVVALGSPAMGDEVLEEGEMEPFVESIS---SLVKGKKLVLFGSYGWGD-GEWMRDWVERMEGYGANLVNE-GL 118 (142)
T ss_pred HHHHhCCEEEEECCccCcccccchhHHHHHHHhh---hhhCCCEEEEEEccCCCC-ChHHHHHHHHHHHCCCEEeCC-cE
Confidence 468899999999999999984 68999999985 368999999999985432 234566777788899988853 23
Q ss_pred eeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHH
Q 035766 85 FLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALR 118 (128)
Q Consensus 85 ~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~ 118 (128)
.+.. . -+++..+++.++.++++
T Consensus 119 ~~~~-----------~-p~~~~l~~~~~~g~~l~ 140 (142)
T PRK05568 119 IVNN-----------T-PEGEGIEKCKALGEALA 140 (142)
T ss_pred EEec-----------C-CCHHHHHHHHHHHHHHH
Confidence 3321 1 14667777777777664
No 24
>PRK06703 flavodoxin; Provisional
Probab=98.77 E-value=2.8e-07 Score=65.38 Aligned_cols=103 Identities=11% Similarity=-0.005 Sum_probs=76.1
Q ss_pred HHHhcCeEEEEcccCC-CCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCC-CC-hHHHHHHHHHhhhhcCceeecccee
Q 035766 8 TFLEFICFHLLTDLFS-SFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGG-SG-GARAQYHLRQIGVYLDLHFVNKPEY 84 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn-~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~-~g-g~~a~~~L~~~l~~~g~~~~~~~~~ 84 (128)
.+.++|.|||+||-|+ +.+|..++.+++++.. ..+.+|++++.++++. ++ ...+...+...|...|+.++.. .+
T Consensus 45 ~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~--~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~-~~ 121 (151)
T PRK06703 45 ELLAYDGIILGSYTWGDGDLPYEAEDFHEDLEN--IDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQE-GL 121 (151)
T ss_pred HHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhc--CCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEccc-Ce
Confidence 6788999999999996 6677789999999965 3678999999988743 22 2466777889999999988853 23
Q ss_pred eeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 035766 85 FLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRAFTLRL 124 (128)
Q Consensus 85 ~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~~~~ 124 (128)
.+. +. +.+++..++++++.++|.+...++
T Consensus 122 ~~~-------~~----p~~~~~~~~~~~~~~~~~~~~~~~ 150 (151)
T PRK06703 122 KIE-------LA----PETDEDVEKCSNFAIAFAEKFAQM 150 (151)
T ss_pred EEe-------cC----CCchhHHHHHHHHHHHHHHHHHhc
Confidence 322 11 113577788888888887765543
No 25
>PRK06756 flavodoxin; Provisional
Probab=98.77 E-value=3.1e-07 Score=64.91 Aligned_cols=98 Identities=11% Similarity=-0.055 Sum_probs=73.6
Q ss_pred HHHHhcCeEEEEcccCC-CCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCC-C-hHHHHHHHHHhhhhcCceeeccce
Q 035766 7 NTFLEFICFHLLTDLFS-SFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGS-G-GARAQYHLRQIGVYLDLHFVNKPE 83 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn-~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~-g-g~~a~~~L~~~l~~~g~~~~~~~~ 83 (128)
..+.++|+|||+||-|+ +.+|..++.+++.+.. ..++||++++.++++.. + ...+...|...|...|+.++.. .
T Consensus 45 ~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~--~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~-~ 121 (148)
T PRK06756 45 SILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDS--IDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLE-G 121 (148)
T ss_pred HHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhc--CCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCC-C
Confidence 46788999999999996 7788889999999864 46899999999987432 2 2466788999999999988743 2
Q ss_pred eeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHH
Q 035766 84 YFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRA 119 (128)
Q Consensus 84 ~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~ 119 (128)
+.+ ++.+ +++..++++++.+++.+
T Consensus 122 ~~~-----------~~~p-~~~d~~~~~~~~~~~~~ 145 (148)
T PRK06756 122 LKV-----------ELTP-EDEDVEKCLQFGAEFVK 145 (148)
T ss_pred eEE-----------ecCC-CHHHHHHHHHHHHHHHH
Confidence 322 1222 35777778888777654
No 26
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.72 E-value=2.9e-07 Score=74.90 Aligned_cols=98 Identities=11% Similarity=0.039 Sum_probs=76.3
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeecccee
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEY 84 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~ 84 (128)
+.+.+.+||++||+||.||+++.+.++.++|++.. -.+.||++++.++.|.+|+ +...+...|..+|+.++. +.+
T Consensus 294 i~~~~~~~d~ii~GspT~~~~~~~~~~~~l~~l~~--~~~~~K~~a~FGsygw~g~--a~~~~~~~l~~~g~~~v~-~~~ 368 (394)
T PRK11921 294 IITEVFKSKAILVGSSTINRGILSSTAAILEEIKG--LGFKNKKAAAFGSYGWSGE--SVKIITERLKKAGFEIVN-DGI 368 (394)
T ss_pred HHHHHHhCCEEEEECCCcCccccHHHHHHHHHhhc--cCcCCCEEEEEecCCCccH--HHHHHHHHHHHCCCEEcc-CcE
Confidence 44567789999999999999999999999999975 4689999999998765443 667888999999999884 234
Q ss_pred eeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHH
Q 035766 85 FLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRA 119 (128)
Q Consensus 85 ~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~ 119 (128)
.+. + .+ +++..++++++.++|.+
T Consensus 369 ~~~-------~----~p-~~~~~~~~~~~g~~la~ 391 (394)
T PRK11921 369 REL-------W----NP-DDEALDRCRSFGENFAE 391 (394)
T ss_pred EEE-------e----CC-CHHHHHHHHHHHHHHHH
Confidence 332 1 12 35778888888888764
No 27
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.71 E-value=3.7e-07 Score=76.30 Aligned_cols=100 Identities=10% Similarity=0.020 Sum_probs=77.1
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeecccee
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEY 84 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~ 84 (128)
+.+.+.+||+|||+||-||+++.+.++.++|.+.. ..+.||++++.|+.|.+|+ +...+...|..+|+.+++ .+
T Consensus 298 i~~~~~~ad~vilGspT~~~~~~p~~~~fl~~l~~--~~l~gK~~~vFGSygw~g~--a~~~~~~~l~~~g~~~~~--~l 371 (479)
T PRK05452 298 ILTNVFRSKGVLVGSSTMNNVMMPKIAGLLEEITG--LRFRNKRASAFGSHGWSGG--AVDRLSTRLQDAGFEMSL--SL 371 (479)
T ss_pred HHhHHhhCCEEEEECCccCCcchHHHHHHHHHhhc--cCcCCCEEEEEECCCcCcH--HHHHHHHHHHHCCCEEec--cE
Confidence 34555679999999999999999999999999975 3589999999998776554 567888889999999873 23
Q ss_pred eeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 035766 85 FLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRAFTL 122 (128)
Q Consensus 85 ~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~~ 122 (128)
.+. +. + +++..++++++.++|.+..+
T Consensus 372 ~~~-------~~----P-~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 372 KAK-------WR----P-DQDALELCREHGREIARQWA 397 (479)
T ss_pred EEE-------ec----C-CHHHHHHHHHHHHHHHHHHh
Confidence 221 21 1 35678888888888876554
No 28
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=98.58 E-value=7.7e-07 Score=66.21 Aligned_cols=76 Identities=21% Similarity=0.138 Sum_probs=59.3
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-----------CcCCCCeEEEEeecCCCC------hH-----H
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-----------NVWADKAAAIVSAAGGSG------GA-----R 62 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-----------~~~~~Kp~~~v~~sg~~g------g~-----~ 62 (128)
-.+++..||.||+.-|.|.+|+|+.||-+||++-.++ +.++||.+.++.+.|... |. .
T Consensus 61 E~e~l~~AD~ivlqfPlwW~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~ 140 (189)
T COG2249 61 EQEKLLWADVIVLQFPLWWYSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGV 140 (189)
T ss_pred HHHHHHhcceEEEEcCchhccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCccccc
Confidence 4688999999999999999999999999999996543 469999999999985421 11 1
Q ss_pred HHHHHHHhhhhcCceeec
Q 035766 63 AQYHLRQIGVYLDLHFVN 80 (128)
Q Consensus 63 a~~~L~~~l~~~g~~~~~ 80 (128)
-..-++.++.++|+..++
T Consensus 141 ~~~~~~~~~~~~g~~~~~ 158 (189)
T COG2249 141 LLDPLYGTFHYCGLGWLP 158 (189)
T ss_pred ccchhHHHHHHcCCcccc
Confidence 122345677888887775
No 29
>PRK06934 flavodoxin; Provisional
Probab=98.56 E-value=7.2e-07 Score=67.88 Aligned_cols=67 Identities=6% Similarity=0.052 Sum_probs=57.9
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCc-eee
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDL-HFV 79 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~-~~~ 79 (128)
.+.+.++|.|+|++|.|.+++|+.+|.+||.. .|.||.+....++|++|..++...|+..+. ++ .+.
T Consensus 124 ~~dl~~YD~I~IG~PIWwg~~P~~V~tFLe~~-----d~~GK~I~pF~T~ggsg~g~s~~~i~~l~~--~a~~v~ 191 (221)
T PRK06934 124 IQNLADYDQIFIGYPIWWYKMPMVMYSFFEQH-----DFSGKTLIPFTTHGGSRFSDSLREIKRLQP--NAQLVT 191 (221)
T ss_pred HHhHHhCCEEEEEcchhhccccHHHHHHHHhc-----CCCCCEEEEEEecCCCCccchHHHHHHHcC--Ccceec
Confidence 46899999999999999999999999999887 678999999999976777788888988875 55 344
No 30
>PRK07308 flavodoxin; Validated
Probab=98.47 E-value=5e-06 Score=58.64 Aligned_cols=98 Identities=10% Similarity=0.004 Sum_probs=71.9
Q ss_pred HHHHhcCeEEEEcccCC-CCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCC-CC-hHHHHHHHHHhhhhcCceeeccce
Q 035766 7 NTFLEFICFHLLTDLFS-SFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGG-SG-GARAQYHLRQIGVYLDLHFVNKPE 83 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn-~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~-~g-g~~a~~~L~~~l~~~g~~~~~~~~ 83 (128)
..+.++|++||++|-|+ +.+|..++++++++.. ..+.+|++++.+.+.. ++ ...+...+...+..+|+.++. +.
T Consensus 44 ~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~--~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~-~~ 120 (146)
T PRK07308 44 SDFEDADIAIVATYTYGDGELPDEIVDFYEDLAD--LDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGA-ES 120 (146)
T ss_pred hHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhc--CCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEcc-Cc
Confidence 35778999999999998 7788899999999965 4688999999999743 22 235667777888889998874 23
Q ss_pred eeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHH
Q 035766 84 YFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRA 119 (128)
Q Consensus 84 ~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~ 119 (128)
+.+- +. + +++..+++.++.+++.+
T Consensus 121 ~~~~-------~~----p-~~~~~~~~~~~~~~l~~ 144 (146)
T PRK07308 121 VKVD-------LA----A-EDEDIERLEAFAEELAA 144 (146)
T ss_pred EEEe-------CC----C-CHHHHHHHHHHHHHHHh
Confidence 3332 11 1 35667777777777653
No 31
>PRK07116 flavodoxin; Provisional
Probab=98.42 E-value=9.2e-07 Score=63.55 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=50.2
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhh
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGV 72 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~ 72 (128)
..+.++|.|||++|.|.+++|+.+|.+|+.+ .+.+|++++++++|..+...+...++..+.
T Consensus 72 ~~l~~~D~Iiig~Pv~~~~~p~~v~~fl~~~-----~l~~k~v~~f~T~g~~~~g~~~~~~~~~~~ 132 (160)
T PRK07116 72 ENIAEYDVIFLGFPIWWYVAPRIINTFLESY-----DFSGKTVIPFATSGGSGIGNAEKELKKSYP 132 (160)
T ss_pred hhHHhCCEEEEECChhccccHHHHHHHHHhc-----CCCCCEEEEEEeCCCCCcCcHHHHHHHHCC
Confidence 3678899999999999999999999999865 577999999999755544466677877754
No 32
>PRK09267 flavodoxin FldA; Validated
Probab=98.37 E-value=3.3e-06 Score=60.90 Aligned_cols=72 Identities=13% Similarity=0.005 Sum_probs=57.0
Q ss_pred HHHHhcCeEEEEcccCC-CCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCCh----HHHHHHHHHhhhhcCceeec
Q 035766 7 NTFLEFICFHLLTDLFS-SFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGG----ARAQYHLRQIGVYLDLHFVN 80 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn-~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg----~~a~~~L~~~l~~~g~~~~~ 80 (128)
..+.++|.+||++|.|+ +..|+.++.+++.+.. ..+.+|++++.+++|..+. ..+...+...+...|+.++.
T Consensus 42 ~~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~--~~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg 118 (169)
T PRK09267 42 EDFEAYDLLILGIPTWGYGELQCDWDDFLPELEE--IDFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVG 118 (169)
T ss_pred hhHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhc--CCCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEEC
Confidence 45778999999999997 7788899999998854 4688999999998743322 34566778888888887773
No 33
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=98.31 E-value=1.7e-05 Score=57.44 Aligned_cols=72 Identities=10% Similarity=-0.056 Sum_probs=57.3
Q ss_pred HHHHhcCeEEEEcccCC-CCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCC--CC--hHHHHHHHHHhhhhcCceeec
Q 035766 7 NTFLEFICFHLLTDLFS-SFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGG--SG--GARAQYHLRQIGVYLDLHFVN 80 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn-~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~--~g--g~~a~~~L~~~l~~~g~~~~~ 80 (128)
..+.+.|.+||+||.|+ +.+|..++.+++.+.. ..+.+|++++++.++. ++ ...+...|...|...|+.++.
T Consensus 40 ~~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~--~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig 116 (167)
T TIGR01752 40 EDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEE--LDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVG 116 (167)
T ss_pred hHHhhCCEEEEEecCCCCCcCcHHHHHHHHHhhc--CCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEc
Confidence 46789999999999996 5578788999998864 4688999999998743 22 135567888889999999883
No 34
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.16 E-value=8.2e-06 Score=58.81 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=49.5
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
.+.+.|.|++++|.|.+++|+.+..+|+-. .|.||.+....++|++|..++...|++.+. ++.+.
T Consensus 70 d~~~YD~I~lG~PvW~~~~~~pv~tFL~~~-----~~~gK~v~~F~T~ggs~~~~~~~~l~~~~~--~a~i~ 134 (156)
T PF12682_consen 70 DLSDYDTIFLGTPVWWGTPPPPVRTFLEQY-----DFSGKTVIPFCTSGGSGFGNSLEDLKKLCP--GATIL 134 (156)
T ss_dssp -GGG-SEEEEEEEEETTEE-CHHHHHHHCT-----TTTTSEEEEEEE-SS--CHHHHHHHHHH-T--TSEE-
T ss_pred CcccCCEEEEechHHcCCCCHHHHHHHHhc-----CCCCCcEEEEEeeCCCChhHHHHHHHHHCC--CCEee
Confidence 568899999999999999999999999865 689999999999866666788888988875 55555
No 35
>PRK12359 flavodoxin FldB; Provisional
Probab=97.95 E-value=0.00033 Score=51.36 Aligned_cols=71 Identities=14% Similarity=0.020 Sum_probs=55.5
Q ss_pred HHHHhcCeEEEEcccC-CCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCC--Ch--HHHHHHHHHhhhhcCceee
Q 035766 7 NTFLEFICFHLLTDLF-SSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGS--GG--ARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeY-n~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~--gg--~~a~~~L~~~l~~~g~~~~ 79 (128)
+.+.+.|.+|++||-| .+.+|..++.+++-+.. ..|+||++++.+.+... +. ..+...|...+...|+.++
T Consensus 41 ~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~--~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~iv 116 (172)
T PRK12359 41 KLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDD--LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFV 116 (172)
T ss_pred hHHccCCEEEEEecccCCCcCcHHHHHHHHHHhh--CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEE
Confidence 4577899999999998 45588888888888864 46999999999987432 22 3556778888887898887
No 36
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=97.89 E-value=0.00017 Score=58.96 Aligned_cols=100 Identities=16% Similarity=0.070 Sum_probs=77.6
Q ss_pred hhHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeecc
Q 035766 2 WLLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNK 81 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~ 81 (128)
++.|.+.+.+|++++++||-||..+++.+-.++-.+-. -...+|++++.++-|..|+ |...++..|+.+|..+..
T Consensus 288 ~~eI~~~i~~a~~~vvGsPT~~~~~~p~i~~~l~~v~~--~~~~~k~~~vfgS~GW~g~--av~~i~~~l~~~g~~~~~- 362 (388)
T COG0426 288 PSEIVEEILDAKGLVVGSPTINGGAHPPIQTALGYVLA--LAPKNKLAGVFGSYGWSGE--AVDLIEEKLKDLGFEFGF- 362 (388)
T ss_pred HHHHHHHHhhcceEEEecCcccCCCCchHHHHHHHHHh--ccCcCceEEEEeccCCCCc--chHHHHHHHHhcCcEEec-
Confidence 57889999999999999999999999999999999975 4788999999997765444 466788889988987763
Q ss_pred ceeeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHH
Q 035766 82 PEYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALR 118 (128)
Q Consensus 82 ~~~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~ 118 (128)
+.+.+. | .+ +++..++++++.++|.
T Consensus 363 ~~i~vk-------~----~P-~~~~l~~c~e~g~~la 387 (388)
T COG0426 363 DGIEVK-------F----RP-TEEDLKKCEEAGRDLA 387 (388)
T ss_pred cceEEE-------e----cC-CHHHHHHHHHHHHHhc
Confidence 233332 2 12 3567777777777664
No 37
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=97.82 E-value=7.8e-05 Score=54.70 Aligned_cols=75 Identities=24% Similarity=0.167 Sum_probs=55.7
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCC--CCcCCCCeEEEEeecCCCChH---HHHHHHHHhhhhcCceee
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRP--PNVWADKAAAIVSAAGGSGGA---RAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~--~~~~~~Kp~~~v~~sg~~gg~---~a~~~L~~~l~~~g~~~~ 79 (128)
..+.+.++|+++|..|---+.+|+++|.+.|-.... .+.+.|||+++.-+.|..||. .+...+.+ |-.-||..+
T Consensus 63 t~~~L~e~D~flFG~PTRfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~-LvHHGmifV 141 (203)
T KOG3135|consen 63 TPETLTEYDGFLFGFPTRFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQETTALTAITQ-LVHHGMIFV 141 (203)
T ss_pred CHHHHhhccceeecccccccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCCCchHhHHHHHHHH-HHhcceEEE
Confidence 357899999999999999999999999999975421 178899999988776655443 23344433 345677766
Q ss_pred c
Q 035766 80 N 80 (128)
Q Consensus 80 ~ 80 (128)
|
T Consensus 142 P 142 (203)
T KOG3135|consen 142 P 142 (203)
T ss_pred e
Confidence 5
No 38
>PRK09004 FMN-binding protein MioC; Provisional
Probab=97.78 E-value=0.00073 Score=48.05 Aligned_cols=74 Identities=8% Similarity=-0.056 Sum_probs=59.9
Q ss_pred HHHHHhcCeEEEEcccC-CCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCC-C-ChHHHHHHHHHhhhhcCceee
Q 035766 6 YNTFLEFICFHLLTDLF-SSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGG-S-GGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeY-n~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~-~-gg~~a~~~L~~~l~~~g~~~~ 79 (128)
.+.+.++|.+||+||-| +|.+|.-.+.+++|+......+.||++++.|.+.. + ..-.+...+...|..+|+..+
T Consensus 41 ~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v 117 (146)
T PRK09004 41 LDDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQI 117 (146)
T ss_pred HHHhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEe
Confidence 35678899999999999 88899999999999964324699999999998833 3 223556788888999999877
No 39
>PRK09271 flavodoxin; Provisional
Probab=97.77 E-value=0.00027 Score=50.76 Aligned_cols=63 Identities=11% Similarity=-0.069 Sum_probs=45.6
Q ss_pred HHHhcCeEEEEcccCCCCC-cHHHHHHHHhhcCCCCcCCCCeEEEEeecC-CCChH---HHHHHHHHhhh
Q 035766 8 TFLEFICFHLLTDLFSSFV-QGPLKNAIDWASRPPNVWADKAAAIVSAAG-GSGGA---RAQYHLRQIGV 72 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i-~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg-~~gg~---~a~~~L~~~l~ 72 (128)
.+.++|++||+||-|+.+. |..++.+++++.. ....+|+++++++++ +.++. .+...+...+.
T Consensus 48 ~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~--~~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~ 115 (160)
T PRK09271 48 DPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAE--TIGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFG 115 (160)
T ss_pred CcccCCEEEEECcccCCCcCCHHHHHHHHHHHH--HhccCCeEEEEecCCCCcCccHHHHHHHHHHHHHh
Confidence 3457899999999998665 5579999999964 234789999999872 33332 45556655554
No 40
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=97.74 E-value=5.7e-05 Score=53.22 Aligned_cols=48 Identities=13% Similarity=0.273 Sum_probs=42.6
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCC
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGG 57 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~ 57 (128)
..+.+.|.||+++|.|.+.+|+.++.+++-.. ..+.+|++++.++++.
T Consensus 39 ~~~~~yD~vi~gspiy~g~~~~~~~~fi~~~~---~~l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 39 PDLSDYDAVIFGSPIYAGRIPGEMREFIKKNK---DNLKNKKVALFSVGGS 86 (143)
T ss_pred cccccCCEEEEEEEEECCcCCHHHHHHHHHHH---HHHcCCcEEEEEEeCC
Confidence 46788999999999999999999999999774 4789999999999854
No 41
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=97.64 E-value=0.00078 Score=47.14 Aligned_cols=60 Identities=15% Similarity=-0.023 Sum_probs=44.6
Q ss_pred HHHhcCeEEEEcccC-CCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecC-CCChH---HHHHHHHHhhh
Q 035766 8 TFLEFICFHLLTDLF-SSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAG-GSGGA---RAQYHLRQIGV 72 (128)
Q Consensus 8 ~i~~AD~ii~~tPeY-n~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg-~~gg~---~a~~~L~~~l~ 72 (128)
.+.++|.+|++||-| .+.+|..++.+++++.. ++|.+++.++++ ..++. .+...++..+.
T Consensus 47 ~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~-----~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~ 111 (140)
T TIGR01754 47 DPENYDLVFLGTWTWERGRTPDEMKDFIAELGY-----KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFG 111 (140)
T ss_pred ChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc-----cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHc
Confidence 356789999999987 55677799999999842 789999999883 34433 45566666654
No 42
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=97.57 E-value=0.00012 Score=53.66 Aligned_cols=45 Identities=7% Similarity=0.036 Sum_probs=40.8
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
.+.++|.||+++|.|.+.+++.++.+++... ..+.+||+++.+++
T Consensus 43 ~l~~yD~vIlGspi~~G~~~~~~~~fl~~~~---~~l~~K~v~~F~v~ 87 (177)
T PRK11104 43 DLSDYDRVVIGASIRYGHFHSALYKFVKKHA---TQLNQMPSAFFSVN 87 (177)
T ss_pred CHHHCCEEEEECccccCCcCHHHHHHHHHHH---HHhCCCeEEEEEec
Confidence 4678999999999999999999999998764 48999999999987
No 43
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=97.12 E-value=0.0019 Score=44.76 Aligned_cols=74 Identities=11% Similarity=0.013 Sum_probs=53.1
Q ss_pred HHHHhcCeEEEEcccCCCCCcH-----HHHHHHHhhc--CCCCcCCCCeEEEEeecCCCChH--HHHHHHHHhhhhcCce
Q 035766 7 NTFLEFICFHLLTDLFSSFVQG-----PLKNAIDWAS--RPPNVWADKAAAIVSAAGGSGGA--RAQYHLRQIGVYLDLH 77 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~-----~lKn~iD~l~--~~~~~~~~Kp~~~v~~sg~~gg~--~a~~~L~~~l~~~g~~ 77 (128)
..+..+|.+|+++|-|+.+.|+ .+..+++... .....+.+|.+++.+.++..++. .+...|...|..+|+.
T Consensus 41 ~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~ 120 (143)
T PF00258_consen 41 SDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAK 120 (143)
T ss_dssp HHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEE
T ss_pred hhhhhhceeeEeecccCCCcchhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCE
Confidence 4788999999999999977555 3334444331 01146899999999887332333 6778899999999998
Q ss_pred eec
Q 035766 78 FVN 80 (128)
Q Consensus 78 ~~~ 80 (128)
.+-
T Consensus 121 ~~~ 123 (143)
T PF00258_consen 121 RVG 123 (143)
T ss_dssp EES
T ss_pred EEE
Confidence 884
No 44
>PRK08105 flavodoxin; Provisional
Probab=96.51 E-value=0.017 Score=41.09 Aligned_cols=70 Identities=4% Similarity=-0.101 Sum_probs=56.0
Q ss_pred hcCeEEEEcccC-CCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCC-C-ChHHHHHHHHHhhhhcCceeec
Q 035766 11 EFICFHLLTDLF-SSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGG-S-GGARAQYHLRQIGVYLDLHFVN 80 (128)
Q Consensus 11 ~AD~ii~~tPeY-n~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~-~-gg~~a~~~L~~~l~~~g~~~~~ 80 (128)
++|.+|+++|-| .|.+|.-.+.+.+++......+.||.+++.|.++. + ..-.+...+...|..+|+..+-
T Consensus 48 ~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 48 QDELVLVVTSTTGQGDLPDSIVPLFQALKDTAGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVG 120 (149)
T ss_pred cCCeEEEEECCCCCCCCChhHHHHHHHHHhcCcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 469999999999 78899999999999975324789999999999843 2 1235567788889999998873
No 45
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=96.07 E-value=0.032 Score=40.45 Aligned_cols=56 Identities=14% Similarity=0.114 Sum_probs=42.9
Q ss_pred HHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCC-ChHHHHHHHHHhh
Q 035766 9 FLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGS-GGARAQYHLRQIG 71 (128)
Q Consensus 9 i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~-gg~~a~~~L~~~l 71 (128)
+.++|.|+++++.|+++.++.+|.+|.-+ .+|.|++.+++|.. +..+....++++-
T Consensus 37 ~~~yD~i~lG~w~d~G~~d~~~~~fl~~l-------~~KkV~lF~T~G~~~~s~~~~~~~~~~~ 93 (160)
T PF12641_consen 37 LEDYDLIFLGFWIDKGTPDKDMKEFLKKL-------KGKKVALFGTAGAGPDSEYAKKILKNVE 93 (160)
T ss_pred CCCCCEEEEEcCccCCCCCHHHHHHHHHc-------cCCeEEEEEecCCCCchHHHHHHHHHHH
Confidence 57799999999999999999999987664 67999999998543 3344444444443
No 46
>PRK05723 flavodoxin; Provisional
Probab=95.26 E-value=0.19 Score=35.88 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=54.1
Q ss_pred CeEEEEcccCCCC-CcHHHHHHHHhhcCCC-CcCCCCeEEEEeec-CCCCh--HHHHHHHHHhhhhcCceee
Q 035766 13 ICFHLLTDLFSSF-VQGPLKNAIDWASRPP-NVWADKAAAIVSAA-GGSGG--ARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 13 D~ii~~tPeYn~~-i~~~lKn~iD~l~~~~-~~~~~Kp~~~v~~s-g~~gg--~~a~~~L~~~l~~~g~~~~ 79 (128)
|.+||+++-|..+ +|.-.+.+.+|+.... ..|.+|.+++++.+ -.++. -.+...|...|..+|+.-+
T Consensus 49 ~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv 120 (151)
T PRK05723 49 EALLAVTSTTGMGELPDNLMPLYSAIRDQLPAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREV 120 (151)
T ss_pred CeEEEEECCCCCCCCchhHHHHHHHHHhcCccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEe
Confidence 8999999999766 8888999999996421 26999999999998 44532 4667788899999999776
No 47
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=95.00 E-value=0.49 Score=33.25 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=52.2
Q ss_pred HHhcCeEEEEcccCCC-----CCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCC-CChHHHHHHHHHhhhhcCceeeccc
Q 035766 9 FLEFICFHLLTDLFSS-----FVQGPLKNAIDWASRPPNVWADKAAAIVSAAGG-SGGARAQYHLRQIGVYLDLHFVNKP 82 (128)
Q Consensus 9 i~~AD~ii~~tPeYn~-----~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~-~gg~~a~~~L~~~l~~~g~~~~~~~ 82 (128)
+...+-+++++|-|.. .+|..++.+|+.... ....+++++++.. +|... ...-+.+-..++ + |
T Consensus 36 ~~~~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~n-----~~~~~gV~gsGnr~~g~~f-~~a~~~i~~~~~---v--p 104 (134)
T PRK03600 36 LEVDEPYILITPTYGGGGTAGAVPKQVIRFLNDEHN-----RKLLRGVIASGNRNFGDAF-ALAGDVISAKCQ---V--P 104 (134)
T ss_pred ccCCCCEEEEEeccCCCCcCCcccHHHHHHHhcccc-----CCcEEEEEEecCchHHHHH-HHHHHHHHHHhC---C--C
Confidence 3456789999999995 799999999988532 2357777777633 23321 222223333344 2 2
Q ss_pred eeeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHH
Q 035766 83 EYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLAL 117 (128)
Q Consensus 83 ~~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l 117 (128)
.+ -.|+-.| +++..+++.+.++++
T Consensus 105 ~l--------~k~El~g---t~~Dv~~~~~~~~~~ 128 (134)
T PRK03600 105 LL--------YRFELSG---TNEDVENVRKGVEEF 128 (134)
T ss_pred eE--------EEEecCC---CHHHHHHHHHHHHHH
Confidence 21 2344333 345666777777776
No 48
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=93.52 E-value=0.38 Score=41.68 Aligned_cols=73 Identities=7% Similarity=-0.113 Sum_probs=58.6
Q ss_pred HHHHhcCeEEEEcccC-CCCCcHHHHHHHHhhcCCC-CcCCCCeEEEEeecCC-CC-hHHHHHHHHHhhhhcCceee
Q 035766 7 NTFLEFICFHLLTDLF-SSFVQGPLKNAIDWASRPP-NVWADKAAAIVSAAGG-SG-GARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeY-n~~i~~~lKn~iD~l~~~~-~~~~~Kp~~~v~~sg~-~g-g~~a~~~L~~~l~~~g~~~~ 79 (128)
+.+.+.|.+||+|+-| +|..|.-.+.+.+|+.+.. ..+.|+.+++.|.+.. +. .-.+...+..-|..+|+..+
T Consensus 104 ~~L~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl 180 (600)
T PRK10953 104 KQIAQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERL 180 (600)
T ss_pred hHhccCCeEEEEECCCCCCCCChhHHHHHHHHhhCcCcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEe
Confidence 5677899999999999 8889999999999996432 5699999999999833 32 23455678888899999776
No 49
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=92.75 E-value=0.16 Score=37.18 Aligned_cols=62 Identities=6% Similarity=0.088 Sum_probs=48.4
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CCCCh---HHHHHHHHHhhh
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GGSGG---ARAQYHLRQIGV 72 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~gg---~~a~~~L~~~l~ 72 (128)
.+.+.|++||++|.|-+-....+++++-.-. ..+..||.++.+++ -..-+ ..+..+++..|.
T Consensus 44 ~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~---e~L~~kP~A~f~vnl~a~k~k~~~e~~~yv~kfl~ 109 (175)
T COG4635 44 ALEDYDAVVIGASIRYGHFHEAVQSFVKKHA---EALSTKPSAFFSVNLTARKEKRTPETNSYVRKFLM 109 (175)
T ss_pred ChhhCceEEEecchhhhhhHHHHHHHHHHHH---HHHhcCCceEEEeehhhcccccCchHHHHHHHHHh
Confidence 5678999999999999999999999987765 58999999999998 32222 334456666554
No 50
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=92.44 E-value=2 Score=30.17 Aligned_cols=99 Identities=15% Similarity=0.031 Sum_probs=62.6
Q ss_pred HhcCeEEEEcccCCCCCcH-HHHHHHHhhcCCCCcCCCCeEEEEeec-CCCCh--HHHHHHHHHhhhhcCceeeccceee
Q 035766 10 LEFICFHLLTDLFSSFVQG-PLKNAIDWASRPPNVWADKAAAIVSAA-GGSGG--ARAQYHLRQIGVYLDLHFVNKPEYF 85 (128)
Q Consensus 10 ~~AD~ii~~tPeYn~~i~~-~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~gg--~~a~~~L~~~l~~~g~~~~~~~~~~ 85 (128)
.+.|.++++||-|..+--+ -++.+++-+.- ..|.+|++++++.+ ..+.+ -.+...+...+...|....+. ...
T Consensus 47 ~~~d~~~~g~~t~~~ge~~~~~~~f~~~~~~--~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~-~~~ 123 (151)
T COG0716 47 ESYDELLLGTPTWGAGELPDDWYDFIEELEP--IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGI-LET 123 (151)
T ss_pred ccCCEEEEEeCCCCCCcCCccHHHHHHHhcc--cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCcccccc-ccc
Confidence 3789999999988776555 77888777763 47999999999996 22333 345667788888888533321 111
Q ss_pred eccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHH
Q 035766 86 LNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRA 119 (128)
Q Consensus 86 i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~ 119 (128)
.+ -.|+.. .+++..++++..+.++..
T Consensus 124 ~~-----~~~~~~---~~e~~~~~~~~w~~~~~~ 149 (151)
T COG0716 124 LG-----YIFDAS---PNEEDEKRIKEWVKQILN 149 (151)
T ss_pred cc-----eeccCC---CCCccHHHHHHHHHHHHh
Confidence 11 111211 345666677776666543
No 51
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=92.00 E-value=0.76 Score=39.71 Aligned_cols=73 Identities=3% Similarity=-0.149 Sum_probs=57.3
Q ss_pred HHHHhcCeEEEEcccC-CCCCcHHHHHHHHhhcCCC-CcCCCCeEEEEeecCC-CC-hHHHHHHHHHhhhhcCceee
Q 035766 7 NTFLEFICFHLLTDLF-SSFVQGPLKNAIDWASRPP-NVWADKAAAIVSAAGG-SG-GARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeY-n~~i~~~lKn~iD~l~~~~-~~~~~Kp~~~v~~sg~-~g-g~~a~~~L~~~l~~~g~~~~ 79 (128)
+.+.+.+.+||+|+-| +|..|.-.+.+.+|+.... ..+.|+.+++.|.+.. +. .-.+...+...|..+|+..+
T Consensus 101 ~~l~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri 177 (597)
T TIGR01931 101 KQLKKERLLLLVISTQGEGEPPEEAISFHKFLHSKKAPKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRL 177 (597)
T ss_pred hhcccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCCCcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEe
Confidence 4577889999999997 8889999999999996432 5689999999998833 32 23455678888889999776
No 52
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=82.55 E-value=14 Score=25.68 Aligned_cols=39 Identities=8% Similarity=-0.110 Sum_probs=30.3
Q ss_pred hcCeEEEEcccCCCC-CcHHHHHHHHhhcCCCCcCCCCeEEEEeecCC
Q 035766 11 EFICFHLLTDLFSSF-VQGPLKNAIDWASRPPNVWADKAAAIVSAAGG 57 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~-i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~ 57 (128)
+.|.+++ |+-|..+ +|..++.+++.+. + +..++++++..
T Consensus 35 ~~~~vli-TyT~G~G~vP~~~~~Fle~~~---n----~~~gV~gSGn~ 74 (125)
T TIGR00333 35 DQEFVLI-TYTGGFGAVPKQTISFLNKKH---N----LLRGVAASGNK 74 (125)
T ss_pred CCCEEEE-ecCCCCCcCCHHHHHHHHhhh---h----cEEEEEEcCCC
Confidence 7888877 9999776 8987777777764 2 89999987733
No 53
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=81.41 E-value=5 Score=30.76 Aligned_cols=36 Identities=8% Similarity=0.104 Sum_probs=23.8
Q ss_pred CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 42 NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 42 ~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
+.|+|+++.++-..+ -...+...++.++..+|+.++
T Consensus 119 ~lf~g~~~il~p~~~--~~~~~~~~~~~l~~~~Ga~~~ 154 (258)
T PF02153_consen 119 DLFEGRNWILCPGED--TDPEALELVEELWEALGARVV 154 (258)
T ss_dssp TTTTTSEEEEEECTT--S-HHHHHHHHHHHHHCT-EEE
T ss_pred cccCCCeEEEeCCCC--ChHHHHHHHHHHHHHCCCEEE
Confidence 467899888886542 234556677778888888766
No 54
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=80.99 E-value=3.2 Score=27.23 Aligned_cols=42 Identities=14% Similarity=-0.011 Sum_probs=32.6
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEE
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIV 52 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v 52 (128)
.+++.+..+|.+|++.. ++..+....++.++++ . .+||+.++
T Consensus 72 ~~~~~~~~~d~ii~vv~-~~~~~~~~~~~~~~~l-----~-~~~~~i~v 113 (116)
T PF01926_consen 72 KFLEQISKSDLIIYVVD-ASNPITEDDKNILREL-----K-NKKPIILV 113 (116)
T ss_dssp HHHHHHCTESEEEEEEE-TTSHSHHHHHHHHHHH-----H-TTSEEEEE
T ss_pred HHHHHHHHCCEEEEEEE-CCCCCCHHHHHHHHHH-----h-cCCCEEEE
Confidence 46777789999999888 6666667888999988 2 66777765
No 55
>PRK02551 flavoprotein NrdI; Provisional
Probab=80.71 E-value=19 Score=25.97 Aligned_cols=65 Identities=8% Similarity=-0.034 Sum_probs=37.3
Q ss_pred cCeEEEEcccC-CCCCcH-------HHHHHHHhhcCCCCcCCCCeEEEEeecCC-CChHHHHHHHHHhhhhcCceee
Q 035766 12 FICFHLLTDLF-SSFVQG-------PLKNAIDWASRPPNVWADKAAAIVSAAGG-SGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 12 AD~ii~~tPeY-n~~i~~-------~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~-~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
-.-+|+++|-| .++-|+ +-+...|++.. ...+....+|++++.. +|... ...-+.+-..++..++
T Consensus 54 ~~p~vli~pTY~~gG~~~~~~~~~~vp~~v~dFL~~--~~N~~~~~gVigsGNrNfg~~F-~~aa~~ia~~~~vP~L 127 (154)
T PRK02551 54 TEPFVAFLPTYLEGGNGIDNGDVEILTTPLGDFIAY--HDNAKRCLGIIGSGNRNFNNQY-CLTAKQYAKRFGFPML 127 (154)
T ss_pred CCCEEEEEeeecCCCCCcccCccccchHHHHHHHcc--hhhhhheEEEEeecccHHHHHH-HHHHHHHHHHcCCCEE
Confidence 35688999999 666221 34556666643 2336677888887733 44333 2334445555555444
No 56
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.70 E-value=2.3 Score=35.68 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=36.4
Q ss_pred hcCeEEEEcccCC--------C----CCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHH
Q 035766 11 EFICFHLLTDLFS--------S----FVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQY 65 (128)
Q Consensus 11 ~AD~ii~~tPeYn--------~----~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~ 65 (128)
-.|+++++|-+|- + ..+|..-...||-.. ..|++|.|++||.+ .+|..-+.+
T Consensus 141 ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~--e~f~~k~VlVIG~g-~SG~DIs~d 204 (448)
T KOG1399|consen 141 IFDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSP--EKFRDKVVLVVGCG-NSGMDISLD 204 (448)
T ss_pred EeeEEEEcccCcCCCCCCcCCCCchhhcCCcceehhhccCc--ccccCceEEEECCC-ccHHHHHHH
Confidence 4699999999994 2 444445555555543 78999999999987 455555444
No 57
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=77.75 E-value=8.5 Score=31.42 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=41.4
Q ss_pred hhHHHHHHHh----cCeEEEEcccCCCCCcHH--------HHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHH
Q 035766 2 WLLTYNTFLE----FICFHLLTDLFSSFVQGP--------LKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQ 69 (128)
Q Consensus 2 ~~~~~~~i~~----AD~ii~~tPeYn~~i~~~--------lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~ 69 (128)
|..+.+.+.+ -..-+++.| |.+=.++. ||+.|+.+.+ ..+|||.||+.| .||..+...|+.
T Consensus 67 ~~~li~~L~~~GY~~~~~l~~~p-YDWR~~~~~~~~~~~~lk~~ie~~~~----~~~~kv~li~HS--mGgl~~~~fl~~ 139 (389)
T PF02450_consen 67 FAKLIENLEKLGYDRGKDLFAAP-YDWRLSPAERDEYFTKLKQLIEEAYK----KNGKKVVLIAHS--MGGLVARYFLQW 139 (389)
T ss_pred HHHHHHHHHhcCcccCCEEEEEe-echhhchhhHHHHHHHHHHHHHHHHH----hcCCcEEEEEeC--CCchHHHHHHHh
Confidence 4556666654 344466666 88777776 8999998874 239999999998 335555444444
Q ss_pred h
Q 035766 70 I 70 (128)
Q Consensus 70 ~ 70 (128)
.
T Consensus 140 ~ 140 (389)
T PF02450_consen 140 M 140 (389)
T ss_pred c
Confidence 3
No 58
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=76.03 E-value=9.5 Score=29.41 Aligned_cols=56 Identities=5% Similarity=-0.098 Sum_probs=34.5
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCC-CCcCCCCeEEEEeec-CCCCh
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRP-PNVWADKAAAIVSAA-GGSGG 60 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~-~~~~~~Kp~~~v~~s-g~~gg 60 (128)
.+.+.+.++|.+|++---+-...++ +|..+-++... ...+.|||+.+.+.| |+...
T Consensus 57 ~~~~~l~~~D~vI~gGG~l~~d~~~-~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~~ 114 (298)
T TIGR03609 57 AVLRALRRADVVIWGGGSLLQDVTS-FRSLLYYLGLMRLARLFGKPVILWGQGIGPLRR 114 (298)
T ss_pred HHHHHHHHCCEEEECCcccccCCcc-cccHHHHHHHHHHHHHcCCCEEEEecccCCcCC
Confidence 5778899999999876544443322 33332222100 024569999999999 88653
No 59
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=75.39 E-value=7.9 Score=32.21 Aligned_cols=54 Identities=11% Similarity=-0.002 Sum_probs=36.0
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CCCChH
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GGSGGA 61 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~gg~ 61 (128)
.+.+.++++|.+|.+---+-..+.+. +.+ .|+.. ..+.|||+.+.+.| |+....
T Consensus 110 ~~~~~l~~aDlvI~gGG~lfqD~y~~-~~~-~y~l~--A~l~gkpv~l~gqsiGPf~~~ 164 (426)
T PRK10017 110 DFVRLLSGYDAIIQVGGSFFVDLYGV-PQF-EHALC--AFMAKKPLYMIGHSVGPFQDE 164 (426)
T ss_pred HHHHHHHhCCEEEECCCCccccCccc-HHH-HHHHH--HHHcCCCEEEECCcCCCcCCH
Confidence 45678999999999875554433332 222 23221 36789999999999 997653
No 60
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=74.95 E-value=8.5 Score=29.79 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=48.9
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeeccceeee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEYFL 86 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i 86 (128)
+.+++||.+|.+.||.-..-...++. +.. ...... .+++.+.+..-......+..--+++|++... |....
T Consensus 81 ~~~~~aDlVieav~e~~~~k~~~~~~----l~~---~~~~~~-il~S~tsg~~~~~la~~~~~~~r~ig~hf~~-P~~~~ 151 (291)
T PRK06035 81 ESLSDADFIVEAVPEKLDLKRKVFAE----LER---NVSPET-IIASNTSGIMIAEIATALERKDRFIGMHWFN-PAPVM 151 (291)
T ss_pred HHhCCCCEEEEcCcCcHHHHHHHHHH----HHh---hCCCCe-EEEEcCCCCCHHHHHhhcCCcccEEEEecCC-CcccC
Confidence 56788999999999854333333433 321 222222 2344331111112222222222356776663 22212
Q ss_pred ccCCCCCccCCCCCCCCHHHHHHHHHHHHHH
Q 035766 87 NAFQPPAKFDSDGNLIDEESKEKLKAVLLAL 117 (128)
Q Consensus 87 ~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l 117 (128)
+. -+. ..|..++++..+++..+++.+
T Consensus 152 ~~---vEv--~~g~~T~~e~~~~~~~~~~~l 177 (291)
T PRK06035 152 KL---IEV--VRAALTSEETFNTTVELSKKI 177 (291)
T ss_pred cc---EEE--eCCCCCCHHHHHHHHHHHHHc
Confidence 22 122 267777888888888877664
No 61
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=73.42 E-value=7.7 Score=26.56 Aligned_cols=50 Identities=8% Similarity=0.017 Sum_probs=35.1
Q ss_pred ChhHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 1 MWLLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 1 ~~~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
.|.+..+.+.+||.++++...-+.- +..-+....|+.. ...+||+.++-.
T Consensus 1 ~~~~~~~~i~~aD~vl~ViD~~~p~-~~~~~~l~~~l~~---~~~~k~~iivlN 50 (141)
T cd01857 1 VWRQLWRVVERSDIVVQIVDARNPL-LFRPPDLERYVKE---VDPRKKNILLLN 50 (141)
T ss_pred CHHHHHHHHhhCCEEEEEEEccCCc-ccCCHHHHHHHHh---ccCCCcEEEEEe
Confidence 4899999999999999998764432 3334466666643 236788877764
No 62
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=72.34 E-value=5.9 Score=27.47 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=36.0
Q ss_pred hcCeEEEEcccCCCC-----CcHHHHHHHHhhcCCCCcCCCCeEEEEeecCC-CChHHHHHHHHHhhhhcCceee
Q 035766 11 EFICFHLLTDLFSSF-----VQGPLKNAIDWASRPPNVWADKAAAIVSAAGG-SGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~-----i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~-~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
-.+=+|+.||-|..+ +|..++.+|++-.. +....+|++++.. .|...+ ..-+.+....+..++
T Consensus 37 ~~ep~vLitpTy~~G~~~~~vp~~v~~FL~~~~N-----~~~l~GVigSGNrNfg~~f~-~aa~~ia~ky~VPll 105 (122)
T PF07972_consen 37 VDEPFVLITPTYGFGENDGGVPKQVIRFLENPDN-----RKLLRGVIGSGNRNFGDNFC-LAADKIAEKYGVPLL 105 (122)
T ss_dssp -SS-EEEEEE-BTTTBSSTSS-HHHHHHHHSHHH-----GGGEEEEEEEE-GGGGGGTT-HHHHHHHHHHT--EE
T ss_pred CCCCEEEEecccCCCCCCCCCCHHHHHHHHHHHH-----HhhheeEEecCCcHHHHHHH-HHHHHHHHHcCCCEE
Confidence 345589999999999 89999999985532 3356677877733 343322 223344555666555
No 63
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=69.97 E-value=2.3 Score=27.37 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcCCCCcCCC-CeEEEEeecCCCC
Q 035766 28 GPLKNAIDWASRPPNVWAD-KAAAIVSAAGGSG 59 (128)
Q Consensus 28 ~~lKn~iD~l~~~~~~~~~-Kp~~~v~~sg~~g 59 (128)
..++|-|+|+... ..+.| |.|+++++|.++|
T Consensus 21 ~~V~~qI~yvk~~-~~~~GpK~VLViGaStGyG 52 (78)
T PF12242_consen 21 RNVENQIEYVKSQ-GKINGPKKVLVIGASTGYG 52 (78)
T ss_dssp HHHHHHHHHHHHC----TS-SEEEEES-SSHHH
T ss_pred HHHHHHHHHHHhc-CCCCCCceEEEEecCCccc
Confidence 3577888888643 45577 9999999984455
No 64
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=69.96 E-value=11 Score=27.50 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=40.0
Q ss_pred EcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CCCChHHHHHHHHHhhhhcCceee
Q 035766 18 LTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 18 ~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
.||-|...+++.++.+++.+.+ .|..+.++|+|-+ |... .......+.+-+.+|..++
T Consensus 52 L~~~~~~~i~~~~~~~~~~l~~---~~~~~~v~IvSNsaGs~~-d~~~~~a~~~~~~lgIpvl 110 (168)
T PF09419_consen 52 LTPPYEDEIPPEYAEWLNELKK---QFGKDRVLIVSNSAGSSD-DPDGERAEALEKALGIPVL 110 (168)
T ss_pred CCCCCcCcCCHHHHHHHHHHHH---HCCCCeEEEEECCCCccc-CccHHHHHHHHHhhCCcEE
Confidence 4788999999999999999974 6666789999988 6543 1112233334455565544
No 65
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=69.61 E-value=12 Score=25.75 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=19.8
Q ss_pred ChhHHHHHHHh-cCeEEEEcccCC
Q 035766 1 MWLLTYNTFLE-FICFHLLTDLFS 23 (128)
Q Consensus 1 ~~~~~~~~i~~-AD~ii~~tPeYn 23 (128)
||..+.+.+.+ ||.+|++..--+
T Consensus 1 ~~~~~~~~i~~~aD~vl~V~D~~~ 24 (156)
T cd01859 1 MWKRLVRRIIKESDVVLEVLDARD 24 (156)
T ss_pred CHHHHHHHHHhhCCEEEEEeeCCC
Confidence 89999999998 999999887543
No 66
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=69.59 E-value=43 Score=24.82 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=24.0
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
.+.+.++|.+++++|-+. +...+++ +. ..+.+| .+++.+
T Consensus 61 ~~~~~~~DiViiavp~~~--~~~v~~~----l~---~~~~~~--~vis~~ 99 (245)
T PRK07634 61 KQHVTSVDTIVLAMPPSA--HEELLAE----LS---PLLSNQ--LVVTVA 99 (245)
T ss_pred HHHHhcCCEEEEecCHHH--HHHHHHH----HH---hhccCC--EEEEEC
Confidence 345678999999999653 3444444 32 133455 556666
No 67
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=69.31 E-value=8.1 Score=27.23 Aligned_cols=60 Identities=10% Similarity=-0.039 Sum_probs=33.2
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CC--CChHHHHHHHHHhhhhc
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GG--SGGARAQYHLRQIGVYL 74 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~--~gg~~a~~~L~~~l~~~ 74 (128)
+.+.+++||.||+++|-+- ++.+++.+.. .+ .+...++..+ |- ....+..+.++..+..-
T Consensus 63 l~~a~~~ad~IiiavPs~~------~~~~~~~l~~---~l-~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~ 125 (157)
T PF01210_consen 63 LEEALEDADIIIIAVPSQA------HREVLEQLAP---YL-KKGQIIISATKGFEPGTLLLLSEVIEEILPIP 125 (157)
T ss_dssp HHHHHTT-SEEEE-S-GGG------HHHHHHHHTT---TS-HTT-EEEETS-SEETTEEEEHHHHHHHHHSSC
T ss_pred HHHHhCcccEEEecccHHH------HHHHHHHHhh---cc-CCCCEEEEecCCcccCCCccHHHHHHHHhhhc
Confidence 4567899999999999764 5666666642 33 2333334444 43 23445556677666543
No 68
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=67.70 E-value=26 Score=27.98 Aligned_cols=56 Identities=2% Similarity=-0.121 Sum_probs=31.3
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCC-CeEEEEeec-CCCChHHHHHHHHHhh
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWAD-KAAAIVSAA-GGSGGARAQYHLRQIG 71 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~-Kp~~~v~~s-g~~gg~~a~~~L~~~l 71 (128)
+.+..+|.+|+++|- ..++.+++-+.. .+.. .++..+.-+ +...+.+..+.+++.+
T Consensus 73 ~a~~~aDlVilavps------~~~~~vl~~i~~---~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l 130 (341)
T PRK12439 73 EAANCADVVVMGVPS------HGFRGVLTELAK---ELRPWVPVVSLVKGLEQGTNMRMSQIIEEVL 130 (341)
T ss_pred HHHhcCCEEEEEeCH------HHHHHHHHHHHh---hcCCCCEEEEEEeCCcCCCCCcHHHHHHHHc
Confidence 457889999999994 456666666541 2322 234333333 3222344455666655
No 69
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=65.90 E-value=44 Score=25.76 Aligned_cols=92 Identities=15% Similarity=0.127 Sum_probs=45.7
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCC-CCeEEEEeecCCCChHHHHHHHHHhhhhcCc-eeecccee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWA-DKAAAIVSAAGGSGGARAQYHLRQIGVYLDL-HFVNKPEY 84 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~-~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~-~~~~~~~~ 84 (128)
+.+.++|.+|+++|- ..++.+++-+. ..+. ++ .+++...+.. ...|++.+..... .++|.+..
T Consensus 60 e~~~~aDvVilavpp------~~~~~vl~~l~---~~l~~~~--~ivS~~aGi~----~~~l~~~~~~~~vvR~MPN~~~ 124 (277)
T PRK06928 60 EIFTKCDHSFICVPP------LAVLPLLKDCA---PVLTPDR--HVVSIAAGVS----LDDLLEITPGLQVSRLIPSLTS 124 (277)
T ss_pred HHHhhCCEEEEecCH------HHHHHHHHHHH---hhcCCCC--EEEEECCCCC----HHHHHHHcCCCCEEEEeCccHH
Confidence 456789999999993 44555555553 1233 44 3455552122 3356666542111 34454333
Q ss_pred eeccCCCCCccCCCCCCCCHHHHHHHHHHHHH
Q 035766 85 FLNAFQPPAKFDSDGNLIDEESKEKLKAVLLA 116 (128)
Q Consensus 85 ~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~ 116 (128)
.++.. ...+-.+ .-.+++.++.++.++..
T Consensus 125 ~~g~g--~t~~~~~-~~~~~~~~~~v~~l~~~ 153 (277)
T PRK06928 125 AVGVG--TSLVAHA-ETVNEANKSRLEETLSH 153 (277)
T ss_pred HHhhh--cEEEecC-CCCCHHHHHHHHHHHHh
Confidence 33321 2223222 22356666666666654
No 70
>PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase. Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A ....
Probab=64.85 E-value=8.7 Score=28.32 Aligned_cols=28 Identities=25% Similarity=0.652 Sum_probs=23.8
Q ss_pred CcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 26 VQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 26 i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
=+..|+|+.+|+.. +.+.||.+.+|++=
T Consensus 120 GTaAL~~a~~~v~s--~~~~g~~aLVVasD 147 (174)
T PF01154_consen 120 GTAALQNAVNWVAS--SPWDGRKALVVASD 147 (174)
T ss_dssp HHHHHHHHHHHHCS--TTSTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHhc--CCCCCCeEEEEecc
Confidence 46799999999987 68899999888874
No 71
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=63.64 E-value=6.3 Score=32.99 Aligned_cols=58 Identities=10% Similarity=0.278 Sum_probs=33.7
Q ss_pred hcCeEEEEcccCCCCCcHHHHHHHHhhc--------CCCCcCCCCeEEEEeecCCCChHHHHHHHHHh
Q 035766 11 EFICFHLLTDLFSSFVQGPLKNAIDWAS--------RPPNVWADKAAAIVSAAGGSGGARAQYHLRQI 70 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~i~~~lKn~iD~l~--------~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~ 70 (128)
.+|.+|++|-.|+.-.-+.++..-+|-. +....|+||.|+|||.+ . .|......|..+
T Consensus 161 ~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G-~-Sg~diA~~L~~~ 226 (461)
T PLN02172 161 IFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNF-A-SGADISRDIAKV 226 (461)
T ss_pred EcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCC-c-CHHHHHHHHHHh
Confidence 4799999999886422222333222211 11167899999999966 2 344444455544
No 72
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=63.11 E-value=8 Score=27.55 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=27.0
Q ss_pred hcCeEEEEcccCCCCCcHHHHH-H----H---HhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhh
Q 035766 11 EFICFHLLTDLFSSFVQGPLKN-A----I---DWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIG 71 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~i~~~lKn-~----i---D~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l 71 (128)
.||.+|++|-.|+.-.++.+.. . + ||... ..+.+|.|+|||.+ ..|.+.+..+.
T Consensus 126 ~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~~~--~~~~~k~V~VVG~G-----~SA~d~a~~l~ 187 (203)
T PF13738_consen 126 RADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWRDP--EDFKGKRVVVVGGG-----NSAVDIAYALA 187 (203)
T ss_dssp EEEEEEE---SSCSB---S-TTGGCSEEEEGGG-STT--GGCTTSEEEEE--S-----HHHHHHHHHHT
T ss_pred eeeeEEEeeeccCCCCccccccccccceEehhhcCCh--hhcCCCcEEEEcCh-----HHHHHHHHHHH
Confidence 3899999999876554444444 1 1 12111 57899999999944 44444444443
No 73
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=62.89 E-value=22 Score=24.31 Aligned_cols=51 Identities=10% Similarity=-0.125 Sum_probs=29.7
Q ss_pred HHHHHHHhcCeEEEEcccCCC-CCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 4 LTYNTFLEFICFHLLTDLFSS-FVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~-~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
.+++.+..+|+++++.-.-+. ..-..+++++..+..-.....++|+.++..
T Consensus 71 ~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~N 122 (170)
T cd01898 71 RFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLN 122 (170)
T ss_pred HHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEE
Confidence 445567779999988766654 233344555544432112345788877774
No 74
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=61.43 E-value=8.4 Score=25.00 Aligned_cols=44 Identities=14% Similarity=-0.090 Sum_probs=33.1
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
++.+.+.+||.||+.|--=++...-..|.. + .=.+||+...-.+
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~---a-----kk~~ip~~~~~~~ 84 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSHNAMWKVKKA---A-----KKYGIPIIYSRSR 84 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcChHHHHHHHHH---H-----HHcCCcEEEECCC
Confidence 577899999999999988888777666665 3 2356888777644
No 75
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=60.79 E-value=18 Score=26.38 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=33.8
Q ss_pred HHHHhcCeEEEEcccCCCC--------------------CcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CC
Q 035766 7 NTFLEFICFHLLTDLFSSF--------------------VQGPLKNAIDWASRPPNVWADKAAAIVSAA-GG 57 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~--------------------i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~ 57 (128)
..+.+..+++++.|+|.+. ....+++++|++... .....+++.++|.| |+
T Consensus 36 ~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~id~~~i~l~G~S~Gg 106 (212)
T TIGR01840 36 KAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKAN-YSIDPNRVYVTGLSAGG 106 (212)
T ss_pred HHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHh-cCcChhheEEEEECHHH
Confidence 3455667899999997653 124577888988641 22345689999988 53
No 76
>PRK07680 late competence protein ComER; Validated
Probab=59.55 E-value=63 Score=24.67 Aligned_cols=59 Identities=5% Similarity=-0.051 Sum_probs=31.3
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCC-CCeEEEEeecCCCChHHHHHHHHHhhhhcCceeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWA-DKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVN 80 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~-~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~ 80 (128)
+.+.++|.+|+++|- ..++.+++.+. +.+. ++ .+++.+++.. ...|+..+..-.+.++|
T Consensus 58 ~~~~~aDiVilav~p------~~~~~vl~~l~---~~l~~~~--~iis~~ag~~----~~~L~~~~~~~~~r~~p 117 (273)
T PRK07680 58 EVISQSDLIFICVKP------LDIYPLLQKLA---PHLTDEH--CLVSITSPIS----VEQLETLVPCQVARIIP 117 (273)
T ss_pred HHHHhCCEEEEecCH------HHHHHHHHHHH---hhcCCCC--EEEEECCCCC----HHHHHHHcCCCEEEECC
Confidence 457899999999974 44555555443 2333 33 4455552221 44555555432334443
No 77
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.50 E-value=2.5 Score=32.59 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=30.1
Q ss_pred ccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 20 DLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 20 PeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
=+||.++|+.....++|.=.+...|.|+|++++++=
T Consensus 117 ~~~N~~Vpp~~qaT~~Y~F~~se~~~grpFgLv~~i 152 (261)
T KOG1631|consen 117 LEYNRSVPPSEQATLPYGFAVSETFAGRPFGLVGNI 152 (261)
T ss_pred hhccccCCCcceeeeeeeeeehhhcCCCccceEEEE
Confidence 479999999999999998655567899999988764
No 78
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=58.30 E-value=66 Score=23.05 Aligned_cols=63 Identities=10% Similarity=-0.023 Sum_probs=39.5
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeec
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVN 80 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~ 80 (128)
..-+.++|+-+|.+ .+..+|.-.-..+... -.+||+.++- -....+...+...+..-+..+++
T Consensus 58 ~~NV~DsDgTlI~~---~g~l~GGt~lT~~~a~-----~~~KP~l~i~----~~~~~~~~~v~~wl~~~~i~vLN 120 (145)
T PF12694_consen 58 EWNVRDSDGTLIFT---RGELTGGTALTVEFAR-----KHGKPCLHID----LSIPEAAAAVAEWLREHNIRVLN 120 (145)
T ss_dssp HHHHHTSSEEEEEE---SSS--HHHHHHHHHHH-----HTT--EEEET----S-HHHHHHHHHHHHHHTT--EEE
T ss_pred HhhhhhcCeEEEEe---cCCCCcHHHHHHHHHH-----HhCCCEEEEe----cCcccHHHHHHHHHHHCCceEEE
Confidence 44578999999998 5567776666666553 3689999993 23445567787888877877773
No 79
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=58.21 E-value=25 Score=28.90 Aligned_cols=67 Identities=15% Similarity=0.028 Sum_probs=45.7
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHH-HHHHHHhhcCCCCcCCC-CeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGP-LKNAIDWASRPPNVWAD-KAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~-lKn~iD~l~~~~~~~~~-Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
-.-|+..||.+++.||.=....+.. .+...|.+.. .|.+ |++.-+.++|.+.+ ++..+++.+|-.++
T Consensus 274 kl~RLaGaD~~~~~t~~Gk~~~~~~~~~~~~~~~~~---~~~~~k~~~Pv~sgG~~~~-----~vp~~~~~~G~Dvi 342 (366)
T cd08148 274 KLLRMAGGDFIHTGTVVGKMALEREEALGIADALTD---DWAGFKRVFPVASGGIHPG-----LVPGILRDFGIDVI 342 (366)
T ss_pred HHHHHcCCCccccCCcccCcCCCHHHHHHHHHHHhC---cccCCCCceEeccCCCChh-----HHHHHHHHhCCcEE
Confidence 3568999999999999444555543 6677788864 5666 88888877655432 34556667775443
No 80
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=58.12 E-value=34 Score=28.54 Aligned_cols=67 Identities=18% Similarity=0.087 Sum_probs=46.1
Q ss_pred HHHHHHhcCeEEEEcccCC-CCCcH-HHHHHHHhhcCCCCcCCC-CeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 5 TYNTFLEFICFHLLTDLFS-SFVQG-PLKNAIDWASRPPNVWAD-KAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn-~~i~~-~lKn~iD~l~~~~~~~~~-Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
-.-|+..||.+++.||.|. ...+. ..+...|.+.. .|.+ |++.-+.++|.+.+ ++..+++.+|-.++
T Consensus 292 kl~RLaGaD~~~~~t~~~Gk~~~~~~~~~~~~~~~~~---~~~~~k~~~Pv~sGG~~~~-----~vp~~~~~~G~Dvi 361 (412)
T TIGR03326 292 KLYRLIGVDQLHTGTAGVGKLEGGKEDTKQINDFLRQ---KWHHIKPVFPVSSGGLHPG-----LVPPLIDALGKDLV 361 (412)
T ss_pred HHHHHcCCCeeeeCCCccCCCCCCHHHHHHHHHHHhC---cccCCCCceEecCCCCChh-----HHHHHHHhcCCceE
Confidence 3568999999999999554 44443 46778888875 5666 99988887665433 45556677775443
No 81
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=56.57 E-value=26 Score=23.01 Aligned_cols=52 Identities=4% Similarity=0.039 Sum_probs=36.4
Q ss_pred hhHHHHHHHhcCeEEEEcccCCCCCc----HHHHHHHHhhcCCCCcCCCCeEEEEeec-C
Q 035766 2 WLLTYNTFLEFICFHLLTDLFSSFVQ----GPLKNAIDWASRPPNVWADKAAAIVSAA-G 56 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPeYn~~i~----~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g 56 (128)
|..+.+.+.+. ++.+++|.|.+.-. ..++.+++++.. ..-.-+++.++|.| |
T Consensus 15 ~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~G~S~G 71 (145)
T PF12695_consen 15 YQPLAEALAEQ-GYAVVAFDYPGHGDSDGADAVERVLADIRA--GYPDPDRIILIGHSMG 71 (145)
T ss_dssp HHHHHHHHHHT-TEEEEEESCTTSTTSHHSHHHHHHHHHHHH--HHCTCCEEEEEEETHH
T ss_pred HHHHHHHHHHC-CCEEEEEecCCCCccchhHHHHHHHHHHHh--hcCCCCcEEEEEEccC
Confidence 55667777777 89999998766544 356777777632 11266899999999 5
No 82
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=55.66 E-value=73 Score=22.73 Aligned_cols=93 Identities=12% Similarity=0.070 Sum_probs=50.0
Q ss_pred hcCeEEEEcccCCCC--CcHHHHHHHHhhcCCCCcCCCCeEEEEeecC-CCChHHHHHHHHHhhhhcCceeeccceeeec
Q 035766 11 EFICFHLLTDLFSSF--VQGPLKNAIDWASRPPNVWADKAAAIVSAAG-GSGGARAQYHLRQIGVYLDLHFVNKPEYFLN 87 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~--i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg-~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i~ 87 (128)
=-+-+|+.||-|.++ .-.+-|..|+.|.. ..=+.+--++++++. ..|...+.. =..+-..++...+
T Consensus 39 v~epyvlitpTyg~G~~~~~Vp~~vi~FLn~--~~Nr~~~rGViaSGN~NfG~~f~~A-g~~iS~k~~vPlL-------- 107 (141)
T COG1780 39 VDEPYVLITPTYGGGGTVGAVPKQVIRFLNN--EHNRALCRGVIASGNRNFGDNFALA-GDVISAKCGVPLL-------- 107 (141)
T ss_pred CCCCeEEEeccccCCCccCccCHHHHHHhcc--ccchhheEEEEecCCccHHHHHHHH-HHHHHHHhCCCEE--------
Confidence 346799999999998 11223445566643 233456667777763 345554432 1223334444332
Q ss_pred cCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 035766 88 AFQPPAKFDSDGNLIDEESKEKLKAVLLALRAFTL 122 (128)
Q Consensus 88 ~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~~ 122 (128)
-.|+-.| .++..+.+++.+.+|.+-..
T Consensus 108 -----y~FEL~G---T~~Dv~~v~~~v~~~~~~~~ 134 (141)
T COG1780 108 -----YRFELLG---TAEDVAAVRKGVTEFWKRAP 134 (141)
T ss_pred -----EEEeccC---CHHHHHHHHHHHHHHHHhCC
Confidence 2343333 35666677777766665443
No 83
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=54.91 E-value=24 Score=26.21 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCcee
Q 035766 29 PLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHF 78 (128)
Q Consensus 29 ~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~ 78 (128)
-+.++||||... +.-.++.++|+|.| .|+..|+ .+-..+..+.+.|
T Consensus 5 yfe~Ai~~L~~~-p~v~~~~Igi~G~S--kGaelAL-llAs~~~~i~avV 50 (213)
T PF08840_consen 5 YFEEAIDWLKSH-PEVDPDKIGIIGIS--KGAELAL-LLASRFPQISAVV 50 (213)
T ss_dssp HHHHHHHHHHCS-TTB--SSEEEEEET--HHHHHHH-HHHHHSSSEEEEE
T ss_pred HHHHHHHHHHhC-CCCCCCCEEEEEEC--HHHHHHH-HHHhcCCCccEEE
Confidence 478999999762 35567999999998 2344443 3333344444443
No 84
>COG1160 Predicted GTPases [General function prediction only]
Probab=54.82 E-value=32 Score=29.02 Aligned_cols=38 Identities=8% Similarity=-0.121 Sum_probs=31.9
Q ss_pred ChhHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcC
Q 035766 1 MWLLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASR 39 (128)
Q Consensus 1 ~~~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~ 39 (128)
|+.|....|.+||.++|+.--- -++++.=+...+||.+
T Consensus 73 i~~Qa~~Ai~eADvilfvVD~~-~Git~~D~~ia~~Lr~ 110 (444)
T COG1160 73 IREQALIAIEEADVILFVVDGR-EGITPADEEIAKILRR 110 (444)
T ss_pred HHHHHHHHHHhCCEEEEEEeCC-CCCCHHHHHHHHHHHh
Confidence 5678899999999999998754 4788888999999964
No 85
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=54.67 E-value=8 Score=32.15 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=31.6
Q ss_pred HhcCeEEEEcccCCCCCcHHHHHHHHhhcC-------CC-CcCCCCeEEEEeec
Q 035766 10 LEFICFHLLTDLFSSFVQGPLKNAIDWASR-------PP-NVWADKAAAIVSAA 55 (128)
Q Consensus 10 ~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~-------~~-~~~~~Kp~~~v~~s 55 (128)
..||.+|++|--|+--.-|.+.-.-++-.+ ++ ..|.||.|+|||++
T Consensus 131 ~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~G 184 (443)
T COG2072 131 LTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAG 184 (443)
T ss_pred EecCEEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCC
Confidence 359999999988877665554433332211 01 68999999999976
No 86
>PF03283 PAE: Pectinacetylesterase
Probab=53.86 E-value=38 Score=27.60 Aligned_cols=44 Identities=18% Similarity=0.108 Sum_probs=29.3
Q ss_pred cHHHHHHHHhhcCCCCcC-CCCeEEEEeec-CCCChHHHHHHHHHhhh
Q 035766 27 QGPLKNAIDWASRPPNVW-ADKAAAIVSAA-GGSGGARAQYHLRQIGV 72 (128)
Q Consensus 27 ~~~lKn~iD~l~~~~~~~-~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~ 72 (128)
--.++.+|||+.. ..+ .-+.|.+.|.| |+.|...-.++++..+.
T Consensus 137 ~~i~~avl~~l~~--~gl~~a~~vlltG~SAGG~g~~~~~d~~~~~lp 182 (361)
T PF03283_consen 137 YRILRAVLDDLLS--NGLPNAKQVLLTGCSAGGLGAILHADYVRDRLP 182 (361)
T ss_pred HHHHHHHHHHHHH--hcCcccceEEEeccChHHHHHHHHHHHHHHHhc
Confidence 3568999999975 224 34677777777 65555554567777765
No 87
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=53.86 E-value=64 Score=26.20 Aligned_cols=59 Identities=15% Similarity=-0.040 Sum_probs=35.4
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CC--CChHHHHHHHHHhhhh
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GG--SGGARAQYHLRQIGVY 73 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~--~gg~~a~~~L~~~l~~ 73 (128)
+.+.++.||.+|+++|-+. +.+.++.+. .+-.|.+-+++++ |- ..+.+..+.++..+..
T Consensus 65 l~~a~~~ad~iv~avPs~~------~r~v~~~l~----~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~ 126 (329)
T COG0240 65 LAEALDGADIIVIAVPSQA------LREVLRQLK----PLLLKDAIIVSATKGLEPETGRLLSEIIEEELPD 126 (329)
T ss_pred HHHHHhcCCEEEEECChHH------HHHHHHHHh----hhccCCCeEEEEeccccCCCcchHHHHHHHHcCC
Confidence 4566777999999999653 555555552 2223444455555 44 3455656667666653
No 88
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=53.69 E-value=65 Score=21.68 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=24.6
Q ss_pred CcCCCCeEEEEeecCCCChHHHHHHHHHhhhh---cCceee
Q 035766 42 NVWADKAAAIVSAAGGSGGARAQYHLRQIGVY---LDLHFV 79 (128)
Q Consensus 42 ~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~---~g~~~~ 79 (128)
+.|+||+++|+-++...|-..-...|..+-.. -|..++
T Consensus 17 ~~y~Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~~gl~IL 57 (108)
T PF00255_consen 17 SKYKGKVLLIVNVASKCGYTKQYKQLNELYEKYKDKGLEIL 57 (108)
T ss_dssp GGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGGGTEEEE
T ss_pred HHcCCCEEEEEecccccCCccccHHHHHHHHHHhcCCeEEE
Confidence 68999999999998556655533455544443 344444
No 89
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=53.41 E-value=35 Score=26.56 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=26.7
Q ss_pred CcCCCCeEEEEeec-CCCChHHHHHHHHHhhhhcCceee
Q 035766 42 NVWADKAAAIVSAA-GGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 42 ~~~~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
..+.|||+.+.+++ |+....-|.+.|..+ |++++
T Consensus 53 g~~~g~~v~v~StGIGgPSaaIAvEEL~~l----Ga~tf 87 (248)
T COG2820 53 GTYNGKPVTVCSTGIGGPSAAIAVEELARL----GAKTF 87 (248)
T ss_pred EEEcCeEEEEEecCCCCchHHHHHHHHHhc----CCeEE
Confidence 67899999999999 877777788887654 66554
No 90
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=53.35 E-value=67 Score=22.03 Aligned_cols=91 Identities=11% Similarity=0.101 Sum_probs=45.7
Q ss_pred EEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CCCChHHHHHHHHHhhhhcCceeeccceeeeccCCCCC
Q 035766 15 FHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GGSGGARAQYHLRQIGVYLDLHFVNKPEYFLNAFQPPA 93 (128)
Q Consensus 15 ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i~~~~~~~ 93 (128)
+|..-|.-.-+=+...+..++.+......|+|||+.++-+- +.+.. +++++|+..-..|.+.+-... ..
T Consensus 24 ~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~---------~~~~fgl~~~~~P~v~i~~~~-~~ 93 (130)
T cd02983 24 IIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLD---------LEEALNIGGFGYPAMVAINFR-KM 93 (130)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHH---------HHHHcCCCccCCCEEEEEecc-cC
Confidence 55555643222233333444444321158999998777765 32221 455667643222455433321 22
Q ss_pred ccC-CCCCCCCHHHHHHHHHHHH
Q 035766 94 KFD-SDGNLIDEESKEKLKAVLL 115 (128)
Q Consensus 94 ~fd-~~g~l~~~~~~~~l~~~~~ 115 (128)
.|- ..|.++.+.+.+.++++++
T Consensus 94 KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 94 KFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred ccccccCccCHHHHHHHHHHHHc
Confidence 665 4566766666666655543
No 91
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=53.22 E-value=77 Score=24.51 Aligned_cols=51 Identities=12% Similarity=-0.035 Sum_probs=28.9
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CCCChHHHHHHHHHhhh
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GGSGGARAQYHLRQIGV 72 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~ 72 (128)
+.+.+||.||+++| |..++..+.-+. +.+.++ ..+++.. |.. .++|+..+.
T Consensus 59 e~~~~aDiIiLavk------P~~~~~vl~~l~---~~~~~~-~lvISi~AGi~-----i~~l~~~l~ 110 (272)
T PRK12491 59 EVANSADILILSIK------PDLYSSVINQIK---DQIKND-VIVVTIAAGKS-----IKSTENEFD 110 (272)
T ss_pred HHHhhCCEEEEEeC------hHHHHHHHHHHH---HhhcCC-cEEEEeCCCCc-----HHHHHHhcC
Confidence 45678999999998 344555444443 123333 3556665 421 455666553
No 92
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=53.03 E-value=85 Score=25.65 Aligned_cols=73 Identities=11% Similarity=0.005 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeeccceeeeccCCCCCccCCCCCCCCHHHH
Q 035766 28 GPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEYFLNAFQPPAKFDSDGNLIDEESK 107 (128)
Q Consensus 28 ~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i~~~~~~~~fd~~g~l~~~~~~ 107 (128)
..++.+++++..|...+ |.+.| +|..|=......+..+|+..|-.+=-..+..+.. ..+.+.-+|...+++..
T Consensus 33 ~~~~~ll~~lg~p~~~~--~~I~V---tGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~--~~eri~i~g~~i~~~~~ 105 (416)
T PRK10846 33 ERVSQVAARLDLLKPAP--FVFTV---AGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVR--YTERVRIQGQELPESAH 105 (416)
T ss_pred HHHHHHHHHhCCCccCC--CEEEE---ECCCChHHHHHHHHHHHHHcCCCceEECCCCCCC--cceEEEECCEECCHHHH
Confidence 45777788887653223 44444 4444444555678888887776542111111111 13455556777765543
No 93
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=50.46 E-value=86 Score=24.04 Aligned_cols=16 Identities=6% Similarity=-0.155 Sum_probs=13.2
Q ss_pred HHHHhcCeEEEEcccC
Q 035766 7 NTFLEFICFHLLTDLF 22 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeY 22 (128)
+.+.+||.+|+++|+.
T Consensus 53 ~~~~~aDlVilavp~~ 68 (279)
T PRK07417 53 SLLKDCDLVILALPIG 68 (279)
T ss_pred hHhcCCCEEEEcCCHH
Confidence 4578899999999953
No 94
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=50.24 E-value=23 Score=26.00 Aligned_cols=36 Identities=17% Similarity=-0.069 Sum_probs=31.3
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcC
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASR 39 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~ 39 (128)
.+.+.++.+|++++++|..+..-...-||++|=...
T Consensus 57 ~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~ 92 (233)
T PF05368_consen 57 SLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA 92 (233)
T ss_dssp HHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc
Confidence 356789999999999999987888889999999864
No 95
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=50.21 E-value=68 Score=24.71 Aligned_cols=16 Identities=0% Similarity=-0.402 Sum_probs=13.8
Q ss_pred HHHHhcCeEEEEcccC
Q 035766 7 NTFLEFICFHLLTDLF 22 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeY 22 (128)
+.++.||.+|.+.||.
T Consensus 80 ~a~~~aDlVieavpe~ 95 (287)
T PRK08293 80 EAVKDADLVIEAVPED 95 (287)
T ss_pred HHhcCCCEEEEeccCC
Confidence 4578999999999976
No 96
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=49.99 E-value=49 Score=22.93 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=31.1
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCC--CCcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRP--PNVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~--~~~~~~Kp~~~v~~s 55 (128)
..+..||++|++ |..+-+..+.++-+|+..- ...+.++|+.+++.=
T Consensus 62 ~~~~~a~~ii~V---~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK 109 (167)
T cd04161 62 NYYAEAHGLVFV---VDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANK 109 (167)
T ss_pred HHHcCCCEEEEE---EECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeC
Confidence 456899999997 4455555677776666421 134578999998864
No 97
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=49.48 E-value=62 Score=23.08 Aligned_cols=45 Identities=9% Similarity=-0.102 Sum_probs=23.5
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
.+..+|+++++.-.-+.......+.+.+++.. -...++|+.+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~--~~~~~~~viiV~N 161 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKE--LGAEDIPMILVLN 161 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHH--cCcCCCCEEEEEE
Confidence 35567777777655444433334444444432 1234567766665
No 98
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=48.97 E-value=94 Score=25.55 Aligned_cols=67 Identities=18% Similarity=0.059 Sum_probs=38.6
Q ss_pred HHHHhcCeEEEEcccCCCCCcHH--HHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGP--LKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~--lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
+.+.+....|.-+|.||..--+. +-.++.+..+....+.||.++|+|.+. -| .. +-..+..+|+.++
T Consensus 75 ~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~-IG-~~----va~~l~a~G~~V~ 143 (381)
T PRK00257 75 DYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGH-VG-GR----LVRVLRGLGWKVL 143 (381)
T ss_pred HHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCH-HH-HH----HHHHHHHCCCEEE
Confidence 34556666777789888542221 222333333323678999999999872 22 22 2233456788775
No 99
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=48.03 E-value=1.3e+02 Score=24.73 Aligned_cols=67 Identities=13% Similarity=0.006 Sum_probs=39.0
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHH--HHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPL--KNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~l--Kn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
+.+.+....|.-+|-+|..--+.. -..+....+.+.++.||.++|+|.+. -| .+ +...+..+|+.++
T Consensus 75 ~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~-IG-~~----vA~~l~a~G~~V~ 143 (378)
T PRK15438 75 AWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGN-VG-RR----LQARLEALGIKTL 143 (378)
T ss_pred HHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCH-HH-HH----HHHHHHHCCCEEE
Confidence 445667777888898885422211 11121112222578999999999872 22 22 3334567788876
No 100
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=47.96 E-value=1.2e+02 Score=23.14 Aligned_cols=24 Identities=4% Similarity=-0.211 Sum_probs=18.1
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHH
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAI 34 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~i 34 (128)
.+.+.++|.+|+++|+. ..+++.+
T Consensus 53 ~e~~~~~d~vi~~vp~~-----~~~~~v~ 76 (296)
T PRK11559 53 KAVAEQCDVIITMLPNS-----PHVKEVA 76 (296)
T ss_pred HHHHhcCCEEEEeCCCH-----HHHHHHH
Confidence 34568899999999973 4566665
No 101
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=47.96 E-value=9.7 Score=27.16 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.5
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHH
Q 035766 92 PAKFDSDGNLIDEESKEKLKAVLLAL 117 (128)
Q Consensus 92 ~~~fd~~g~l~~~~~~~~l~~~~~~l 117 (128)
.+-||++|.+..+...+.+.+++++|
T Consensus 137 ~~~Fde~G~l~~~~~~~~l~~ll~~~ 162 (162)
T PF06703_consen 137 GKFFDEDGYLVEDLFENWLEKLLEKF 162 (162)
T ss_pred hhEECCCCEEeHHHHHHHHHHHHhcC
Confidence 57899999999999999998888764
No 102
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=47.80 E-value=88 Score=25.24 Aligned_cols=69 Identities=16% Similarity=0.292 Sum_probs=38.2
Q ss_pred HHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCcee--eccceeeeccCCCCCccCCCCCCCCHHH
Q 035766 29 PLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHF--VNKPEYFLNAFQPPAKFDSDGNLIDEES 106 (128)
Q Consensus 29 ~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~--~~~~~~~i~~~~~~~~fd~~g~l~~~~~ 106 (128)
-++.+++.+..|...+ | +|+++|..|=......|.++|+..|..+ +..|.+ -. ..+.+.=+|...+++.
T Consensus 3 r~~~~l~~lg~p~~~~--~---vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl--~~--~~eri~i~g~~i~~~~ 73 (397)
T TIGR01499 3 RMKKLLEALGNPQDLY--P---VIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHL--VS--FNERIRINGEPISDEE 73 (397)
T ss_pred HHHHHHHHcCCcHhhC--C---EEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCc--Cc--cceEEEECCEECCHHH
Confidence 3677888887652222 3 4444444444555677888898877765 322222 11 1345544666666543
No 103
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=47.13 E-value=26 Score=22.89 Aligned_cols=62 Identities=10% Similarity=0.011 Sum_probs=34.4
Q ss_pred hcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeeccceeee
Q 035766 11 EFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEYFL 86 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i 86 (128)
+.||++.- -+.-+|++ +.+|+++.. .|||+.+++-++.... ..+..-|..+|..+-+ .++..
T Consensus 4 D~dGvl~~---g~~~ipga-~e~l~~L~~-----~g~~~~~lTNns~~s~----~~~~~~L~~~Gi~~~~-~~i~t 65 (101)
T PF13344_consen 4 DLDGVLYN---GNEPIPGA-VEALDALRE-----RGKPVVFLTNNSSRSR----EEYAKKLKKLGIPVDE-DEIIT 65 (101)
T ss_dssp ESTTTSEE---TTEE-TTH-HHHHHHHHH-----TTSEEEEEES-SSS-H----HHHHHHHHHTTTT--G-GGEEE
T ss_pred eCccEeEe---CCCcCcCH-HHHHHHHHH-----cCCCEEEEeCCCCCCH----HHHHHHHHhcCcCCCc-CEEEC
Confidence 34666664 33357777 778888854 4899999997632222 2233344667876554 34443
No 104
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=46.55 E-value=42 Score=22.57 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=29.4
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-CcCCCCeEEEEeec
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-NVWADKAAAIVSAA 55 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-~~~~~Kp~~~v~~s 55 (128)
...++.+|++|++.+--+ +..+..+-+|+.... ..-.++|+.+++.=
T Consensus 67 ~~~~~~~d~~ilv~d~~~---~~s~~~~~~~l~~~~~~~~~~~pivvv~nK 114 (164)
T smart00175 67 SSYYRGAVGALLVYDITN---RESFENLKNWLKELREYADPNVVIMLVGNK 114 (164)
T ss_pred HHHhCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence 445678999999977654 455555555554210 11147888888864
No 105
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=46.45 E-value=46 Score=27.80 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=45.8
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcH-HHHHHHHhhcCCC-----------CcCCC-CeEEEEeecCCCChHHHHHHHHHhh
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQG-PLKNAIDWASRPP-----------NVWAD-KAAAIVSAAGGSGGARAQYHLRQIG 71 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~-~lKn~iD~l~~~~-----------~~~~~-Kp~~~v~~sg~~gg~~a~~~L~~~l 71 (128)
-.-|+..||.+++.||.=....+. ..+...|.+..+. +.|.+ ||+.-+.++|.+.+ ++..++
T Consensus 279 kl~RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~Pv~sGG~~~~-----~~p~~~ 353 (412)
T cd08213 279 KLYRLIGVDQLHIGTAVGKMEGDKEEVLRIADILREQKYKPDEEDFHLAQDWGGIKPVFPVASGGLHPG-----LVPDVI 353 (412)
T ss_pred HHHHHcCCCccccCCccCCcCCCHHHHHHHHHHHHhccccccchhccccCccccCCCceEecCCCCChh-----HHHHHH
Confidence 356889999999999933344443 4677778876431 24666 89988887765433 355566
Q ss_pred hhcCceee
Q 035766 72 VYLDLHFV 79 (128)
Q Consensus 72 ~~~g~~~~ 79 (128)
+.+|-.++
T Consensus 354 ~~~G~Dvi 361 (412)
T cd08213 354 DILGKDIV 361 (412)
T ss_pred HHhCCceE
Confidence 77775443
No 106
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=46.20 E-value=1.1e+02 Score=24.69 Aligned_cols=57 Identities=12% Similarity=0.005 Sum_probs=32.0
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CC--C--ChHHHHHHHHHhh
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GG--S--GGARAQYHLRQIG 71 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~--~--gg~~a~~~L~~~l 71 (128)
+-+.+.+||.+|+++|-. .+...++..-+++. .+++ +++.+ |- . ......+.++..+
T Consensus 76 l~eal~~ADiIIlAVPs~--~i~~vl~~l~~~l~------~~~~--iVs~tKGie~~~~~~~~~se~i~e~l 137 (342)
T TIGR03376 76 LVEAAKGADILVFVIPHQ--FLEGICKQLKGHVK------PNAR--AISCIKGLEVSKDGVKLLSDIIEEEL 137 (342)
T ss_pred HHHHHhcCCEEEEECChH--HHHHHHHHHHhhcC------CCCE--EEEEeCCcccCCCcCccHHHHHHHHh
Confidence 345678999999999954 23444444433331 2344 45555 54 2 2345556666665
No 107
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=45.88 E-value=52 Score=27.42 Aligned_cols=67 Identities=10% Similarity=-0.122 Sum_probs=43.9
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHH-HHHHHHhhcCCCCcCCC-CeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGP-LKNAIDWASRPPNVWAD-KAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~-lKn~iD~l~~~~~~~~~-Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
-.-|+..||.+++.|+.=....+.. .....|.+.. .|.+ |++.-+.++|.+.+ ++-.++..+|-.++
T Consensus 282 kl~RLaGaD~~~~~~~~Gk~~~~~~~~~~~~~~~~~---~~~~~k~~~Pv~sGG~~~~-----~~p~~~~~~G~D~i 350 (407)
T PRK09549 282 KLLRYAGADFSLFPSPYGSVALEKEEALAIAKELTE---DDDPFKRSFPVPSAGIHPG-----LVPLLIRDFGKDVV 350 (407)
T ss_pred HHHHHcCCCccccCCCcCCcCCCHHHHHHHHHHHhc---cccCCCccEEeecCCCChh-----HHHHHHHHhCCceE
Confidence 3568899999999998444444443 4667777764 5666 88888876654432 34555667774443
No 108
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=45.52 E-value=77 Score=21.34 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=23.1
Q ss_pred CCCeEEEEeec-CCCChHHHHHHHHHhhhhcCceeec
Q 035766 45 ADKAAAIVSAA-GGSGGARAQYHLRQIGVYLDLHFVN 80 (128)
Q Consensus 45 ~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~~~g~~~~~ 80 (128)
..||+.++|.+ ..+ .+.+.++++.+.+|+.++.
T Consensus 11 A~rP~il~G~g~~~~---~a~~~l~~lae~~~~Pv~~ 44 (137)
T PF00205_consen 11 AKRPVILAGRGARRS---GAAEELRELAEKLGIPVAT 44 (137)
T ss_dssp -SSEEEEE-HHHHHT---TCHHHHHHHHHHHTSEEEE
T ss_pred CCCEEEEEcCCcChh---hHHHHHHHHHHHHCCCEEe
Confidence 46899999876 222 3456788889999998884
No 109
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=45.22 E-value=35 Score=23.33 Aligned_cols=50 Identities=6% Similarity=-0.104 Sum_probs=31.3
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
....++.+|++|++...=+..--..++++++++......-.++|+.+++.
T Consensus 65 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~n 114 (165)
T cd04146 65 LERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGN 114 (165)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 34567789999999776554333445666666653111134788888874
No 110
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=44.88 E-value=41 Score=23.84 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=28.9
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHH---HHHHhhcCCCCcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLK---NAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lK---n~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
..+..+|++|++..-.+ +..+. +.++.+... ..+.++|+.+++.=
T Consensus 80 ~~~~~ad~ii~vvD~~~---~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK 127 (184)
T smart00178 80 DYFPEVNGIVYLVDAYD---KERFAESKRELDALLSD-EELATVPFLILGNK 127 (184)
T ss_pred HHhCCCCEEEEEEECCc---HHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeC
Confidence 44678999999976654 34444 444444321 34678999888864
No 111
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=44.86 E-value=40 Score=23.29 Aligned_cols=46 Identities=11% Similarity=-0.026 Sum_probs=27.7
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEe
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVS 53 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~ 53 (128)
++++.+++||.++++.+.-..-. ..-+....++.. .-.+||+.++-
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~-~~~~~i~~~l~~---~~~~~p~ilVl 46 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMG-TRCKHVEEYLKK---EKPHKHLIFVL 46 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCcc-ccCHHHHHHHHh---ccCCCCEEEEE
Confidence 46789999999999998655321 223444444432 22246665554
No 112
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=44.71 E-value=52 Score=23.74 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=14.5
Q ss_pred CcCCCCeEEEEeec-CCCC
Q 035766 42 NVWADKAAAIVSAA-GGSG 59 (128)
Q Consensus 42 ~~~~~Kp~~~v~~s-g~~g 59 (128)
....+||+.+++.| |...
T Consensus 95 ~~~~~~pv~~~g~g~gp~~ 113 (286)
T PF04230_consen 95 AKKLGKPVIILGQGIGPFR 113 (286)
T ss_pred HHhcCCCeEEECceECccC
Confidence 36789999999999 7743
No 113
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=44.26 E-value=7.5 Score=26.45 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=3.3
Q ss_pred EEcccCCCCCcHH
Q 035766 17 LLTDLFSSFVQGP 29 (128)
Q Consensus 17 ~~tPeYn~~i~~~ 29 (128)
-+||.||+.+|+.
T Consensus 10 TVTpvYNG~~~~~ 22 (126)
T PF08948_consen 10 TVTPVYNGCDSGE 22 (126)
T ss_dssp ------TT--SS-
T ss_pred EEEeeecCccCCC
Confidence 3799999988763
No 114
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=44.23 E-value=60 Score=25.04 Aligned_cols=29 Identities=0% Similarity=-0.239 Sum_probs=19.6
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHH
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAID 35 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD 35 (128)
+.++.||.||.+.||--......++...+
T Consensus 79 ~~~~~aD~Vieav~e~~~~k~~v~~~l~~ 107 (295)
T PLN02545 79 EELRDADFIIEAIVESEDLKKKLFSELDR 107 (295)
T ss_pred HHhCCCCEEEEcCccCHHHHHHHHHHHHh
Confidence 56888999999998765444444444333
No 115
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=44.14 E-value=24 Score=25.46 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=33.5
Q ss_pred HHHHhcCeEEEEcccCCCCCc------------------HHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQ------------------GPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~------------------~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
..+...-|+++++|.|.++-. .-+..+++|+... .....+.++++|.|
T Consensus 7 ~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~iD~~ri~i~G~S 72 (213)
T PF00326_consen 7 AQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQ-YYIDPDRIGIMGHS 72 (213)
T ss_dssp HHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHT-TSEEEEEEEEEEET
T ss_pred HHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhcc-ccccceeEEEEccc
Confidence 345567899999999999873 1266778888532 34567899999988
No 116
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=43.57 E-value=43 Score=23.98 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=20.1
Q ss_pred CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 42 NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 42 ~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
..+.||.++|+|++ .-| . .+-..+..+||.++
T Consensus 32 ~~l~g~tvgIiG~G-~IG-~----~vA~~l~~fG~~V~ 63 (178)
T PF02826_consen 32 RELRGKTVGIIGYG-RIG-R----AVARRLKAFGMRVI 63 (178)
T ss_dssp S-STTSEEEEESTS-HHH-H----HHHHHHHHTT-EEE
T ss_pred cccCCCEEEEEEEc-CCc-C----eEeeeeecCCceeE
Confidence 68999999999976 112 1 23334567788776
No 117
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=43.32 E-value=1.2e+02 Score=21.70 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=35.8
Q ss_pred cCCCCeEEEEeec-CCCChHHHHHHHHHhhhhcCceeec-cceeeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHH
Q 035766 43 VWADKAAAIVSAA-GGSGGARAQYHLRQIGVYLDLHFVN-KPEYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLAL 117 (128)
Q Consensus 43 ~~~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~~~g~~~~~-~~~~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l 117 (128)
.|+||++.++|-. |..| ..++..++..|+.++- ..+.++-. ...+. |=+.++|++++.+++
T Consensus 2 ~l~gkKviiiGdRDGiPg-----pAie~c~~~~gaevvfs~TeCFVct--aagaM-------DLEnQ~rvk~~aEk~ 64 (150)
T PF04723_consen 2 ILEGKKVIIIGDRDGIPG-----PAIEECVKTAGAEVVFSSTECFVCT--AAGAM-------DLENQQRVKDLAEKY 64 (150)
T ss_pred ccCCcEEEEEecCCCCCc-----HHHHHHHHhcCceEEEEeeeEEEec--ccccc-------cHHHHHHHHHHHHhc
Confidence 6899999999988 6544 2455566777887761 11222221 12233 345667777666543
No 118
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=42.76 E-value=56 Score=26.45 Aligned_cols=36 Identities=8% Similarity=-0.051 Sum_probs=28.1
Q ss_pred hHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcC
Q 035766 3 LLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASR 39 (128)
Q Consensus 3 ~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~ 39 (128)
.+....+.+||+++++..--. +++..-+....|+.+
T Consensus 70 ~~~~~~~~~ad~vl~vvD~~~-~~~~~d~~i~~~l~~ 105 (429)
T TIGR03594 70 EQAEIAIEEADVILFVVDGRE-GLTPEDEEIAKWLRK 105 (429)
T ss_pred HHHHHHHhhCCEEEEEEeCCC-CCCHHHHHHHHHHHH
Confidence 456778899999999988665 577777788888853
No 119
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=42.60 E-value=66 Score=22.32 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=31.6
Q ss_pred ChhHHHHHHH-hcCeEEEEcccCCCCC------cHHHHHHHHh-hcCCCCcCCCCeEEEEeec
Q 035766 1 MWLLTYNTFL-EFICFHLLTDLFSSFV------QGPLKNAIDW-ASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 1 ~~~~~~~~i~-~AD~ii~~tPeYn~~i------~~~lKn~iD~-l~~~~~~~~~Kp~~~v~~s 55 (128)
+|..+.+.+. ..+.+.+--|-|..+- ...++...++ +......+..+++.++|.|
T Consensus 16 ~~~~~~~~L~~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S 78 (251)
T TIGR03695 16 DWQALIELLGPHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQLGIEPFFLVGYS 78 (251)
T ss_pred hHHHHHHHhcccCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHcCCCeEEEEEec
Confidence 3677777774 4555555555554432 2345565555 3211134567899999988
No 120
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=42.19 E-value=17 Score=26.75 Aligned_cols=38 Identities=16% Similarity=0.006 Sum_probs=22.5
Q ss_pred HHHHhcCeEEEEcccCCC-CCcHHHHHHHHhhcCCCCcCCCCeEEEEe
Q 035766 7 NTFLEFICFHLLTDLFSS-FVQGPLKNAIDWASRPPNVWADKAAAIVS 53 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~-~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~ 53 (128)
+.+..+|.+++.||-||. ..-...|.+.|+= -|+..|+
T Consensus 77 ~~lt~~DRVllfs~~~~~~e~~~~a~~L~~~g---------i~~v~Vs 115 (172)
T PF10740_consen 77 DELTETDRVLLFSPFSTDEEAVALAKQLIEQG---------IPFVGVS 115 (172)
T ss_dssp ----TT-EEEEEES-S--HHHHHHHHHHHHHT-----------EEEEE
T ss_pred ccccccceEEEEeCCCCCHHHHHHHHHHHHCC---------CCEEEEE
Confidence 578999999999999998 7777777777764 4556666
No 121
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.56 E-value=56 Score=25.04 Aligned_cols=96 Identities=10% Similarity=0.088 Sum_probs=46.5
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHH-HHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeeccceee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLK-NAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEYF 85 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lK-n~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~~ 85 (128)
+.+.+||.+|++.||-. .+| ..+.-+.. ..... +.+++.+++.........+..--+++|++... |...
T Consensus 78 ~~~~~aDlVi~av~e~~-----~~k~~~~~~l~~---~~~~~-~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~-P~~~ 147 (282)
T PRK05808 78 DDLKDADLVIEAATENM-----DLKKKIFAQLDE---IAKPE-AILATNTSSLSITELAAATKRPDKVIGMHFFN-PVPV 147 (282)
T ss_pred HHhccCCeeeecccccH-----HHHHHHHHHHHh---hCCCC-cEEEECCCCCCHHHHHHhhCCCcceEEeeccC-Cccc
Confidence 56788999999999853 333 44444432 22211 12233332222112122221112466666553 2221
Q ss_pred eccCCCCCccCCCCCCCCHHHHHHHHHHHHHH
Q 035766 86 LNAFQPPAKFDSDGNLIDEESKEKLKAVLLAL 117 (128)
Q Consensus 86 i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l 117 (128)
.+. -+ . ..|.-++++..+++..+++.+
T Consensus 148 ~~~---ve-v-~~g~~t~~e~~~~~~~l~~~l 174 (282)
T PRK05808 148 MKL---VE-I-IRGLATSDATHEAVEALAKKI 174 (282)
T ss_pred Ccc---EE-E-eCCCCCCHHHHHHHHHHHHHc
Confidence 221 12 2 244556788888887777654
No 122
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=41.55 E-value=9.9 Score=23.49 Aligned_cols=15 Identities=47% Similarity=0.869 Sum_probs=12.9
Q ss_pred CCccCCCCCCCCHHH
Q 035766 92 PAKFDSDGNLIDEES 106 (128)
Q Consensus 92 ~~~fd~~g~l~~~~~ 106 (128)
+|.+|++|++++|+.
T Consensus 47 PELLD~~G~~i~EeL 61 (65)
T PF11189_consen 47 PELLDENGNIINEEL 61 (65)
T ss_pred cccCCCCcCCcCCce
Confidence 588999999998874
No 123
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=40.94 E-value=1.2e+02 Score=23.17 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=40.1
Q ss_pred eEEEEcccCCCCCcHHHHHHHHhhcCCCCcC-CCCeEEEEeecCCCCh-HHHHHHHHHhhhhcCceee
Q 035766 14 CFHLLTDLFSSFVQGPLKNAIDWASRPPNVW-ADKAAAIVSAAGGSGG-ARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 14 ~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~-~~Kp~~~v~~sg~~gg-~~a~~~L~~~l~~~g~~~~ 79 (128)
.+++.+.-+.+ ++-|-...+++.. .+ .+|.+++|-+++..+. ..-....++.++.+|+.+.
T Consensus 3 ~ll~s~~~~~~--~~~l~~~~~~~~~---~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~ 65 (233)
T PRK05282 3 LLLLSNSTLPG--TGYLEHALPLIAE---LLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVT 65 (233)
T ss_pred EEEEecCCCCC--CchHHHHHHHHHH---HHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 45666666665 6777777777752 22 5789999999843222 2224567788888998755
No 124
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=40.65 E-value=75 Score=25.64 Aligned_cols=48 Identities=10% Similarity=-0.087 Sum_probs=31.7
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
..+.+.+||.+|++...-+......++++.+++.. -...++|+.++..
T Consensus 262 tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~--l~~~~~piIlV~N 309 (351)
T TIGR03156 262 TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEE--LGAEDIPQLLVYN 309 (351)
T ss_pred HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHH--hccCCCCEEEEEE
Confidence 34567889999998877665555566666666643 1234788777764
No 125
>PRK10162 acetyl esterase; Provisional
Probab=40.63 E-value=29 Score=27.16 Aligned_cols=55 Identities=2% Similarity=-0.023 Sum_probs=34.8
Q ss_pred hhHHHHHHHhcCeEEEEcccCCCCC----cHHHH---HHHHhhcCCCCcC--CCCeEEEEeec-C
Q 035766 2 WLLTYNTFLEFICFHLLTDLFSSFV----QGPLK---NAIDWASRPPNVW--ADKAAAIVSAA-G 56 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPeYn~~i----~~~lK---n~iD~l~~~~~~~--~~Kp~~~v~~s-g 56 (128)
|..+.+.+...-++.+++|.|..+. |..++ .+++|+......+ ..+.+.++|.| |
T Consensus 100 ~~~~~~~la~~~g~~Vv~vdYrlape~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaG 164 (318)
T PRK10162 100 HDRIMRLLASYSGCTVIGIDYTLSPEARFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAG 164 (318)
T ss_pred hhHHHHHHHHHcCCEEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHH
Confidence 3445566766568888999987653 44444 4677875311233 44678999988 5
No 126
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=40.36 E-value=75 Score=21.30 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=26.3
Q ss_pred eeeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 035766 83 EYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRAFTLR 123 (128)
Q Consensus 83 ~~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~~~ 123 (128)
.+++++ .-.+|++|.+......++.++.++++.+..++
T Consensus 14 ~v~vSG---q~~~d~~g~~~~~d~~~Q~~~~l~ni~~~L~~ 51 (114)
T cd06153 14 HLFISG---TASIVGHGTVHPGDVEAQTRETLENIEALLEA 51 (114)
T ss_pred EEEEEe---ECcCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 466665 35677778776556777888888877766654
No 127
>PLN02256 arogenate dehydrogenase
Probab=40.09 E-value=1.7e+02 Score=23.05 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=15.0
Q ss_pred hcCeEEEEcccCCCCCcHHHHHHHHhh
Q 035766 11 EFICFHLLTDLFSSFVQGPLKNAIDWA 37 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~i~~~lKn~iD~l 37 (128)
++|.+|+++|.+ .++.++.-+
T Consensus 92 ~aDvVilavp~~------~~~~vl~~l 112 (304)
T PLN02256 92 HPDVVLLCTSIL------STEAVLRSL 112 (304)
T ss_pred CCCEEEEecCHH------HHHHHHHhh
Confidence 689999999953 455555554
No 128
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=39.66 E-value=77 Score=21.90 Aligned_cols=46 Identities=9% Similarity=-0.089 Sum_probs=27.5
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
..+..||++|++...-+ +..+.++..|+......-.++|+.+++.=
T Consensus 63 ~~~~~ad~ii~V~D~t~---~~s~~~~~~~l~~~~~~~~~~piilv~NK 108 (164)
T cd04162 63 RYLSGSQGLIFVVDSAD---SERLPLARQELHQLLQHPPDLPLVVLANK 108 (164)
T ss_pred HHHhhCCEEEEEEECCC---HHHHHHHHHHHHHHHhCCCCCcEEEEEeC
Confidence 45789999999865444 33444444444311012268999988864
No 129
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.42 E-value=1.5e+02 Score=24.28 Aligned_cols=59 Identities=10% Similarity=-0.009 Sum_probs=33.9
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CCC--Ch--HHHHHHHHHhh
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GGS--GG--ARAQYHLRQIG 71 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~--gg--~~a~~~L~~~l 71 (128)
+.+.+++||.||+++|- ..++..+..+... ..+..+ ..+++.+ |-. .+ ....+.++..+
T Consensus 87 l~eav~~aDiIvlAVPs------q~l~~vl~~l~~~-~~l~~~-~~iIS~aKGIe~~t~~~~~~sevi~e~l 150 (365)
T PTZ00345 87 LKEAVEDADLLIFVIPH------QFLESVLSQIKEN-NNLKKH-ARAISLTKGIIVENGKPVLCSDVIEEEL 150 (365)
T ss_pred HHHHHhcCCEEEEEcCh------HHHHHHHHHhccc-cccCCC-CEEEEEeCCcccCCCCcccHHHHHHHHh
Confidence 34678899999999994 4566666666410 023322 3455555 542 22 34455666665
No 130
>PLN02913 dihydrofolate synthetase
Probab=39.00 E-value=1.9e+02 Score=24.59 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=39.1
Q ss_pred HHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCcee--eccceeeeccCCCCCccCCC--CCCCCH
Q 035766 29 PLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHF--VNKPEYFLNAFQPPAKFDSD--GNLIDE 104 (128)
Q Consensus 29 ~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~--~~~~~~~i~~~~~~~~fd~~--g~l~~~ 104 (128)
-++.+++.|..|...+ | +|.++|..|=......|..+|..-|..+ +..|.+. . ..+.+.=+ |...++
T Consensus 60 r~~~ll~~LG~P~~~~--~---vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~--~--~~ERi~in~~g~~is~ 130 (510)
T PLN02913 60 RMRRLMDRLGNPHSKF--K---AVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLR--S--IRERISVGKLGKPVST 130 (510)
T ss_pred HHHHHHHHcCCchhhC--c---EEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCc--e--eceEEEECCCCCcCCH
Confidence 4677777777542222 3 4444454444455667888888766643 2223321 1 14666545 888876
Q ss_pred HHH
Q 035766 105 ESK 107 (128)
Q Consensus 105 ~~~ 107 (128)
+..
T Consensus 131 ~~~ 133 (510)
T PLN02913 131 NTL 133 (510)
T ss_pred HHH
Confidence 544
No 131
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=38.81 E-value=74 Score=22.26 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=27.7
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhc---CCCCcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWAS---RPPNVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~---~~~~~~~~Kp~~~v~~s 55 (128)
..+..+|++|++...++. ..+.+...|+. +. ....++|+.+++.=
T Consensus 82 ~~~~~ad~iilV~D~~~~---~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK 129 (190)
T cd00879 82 DYFPEVDGIVFLVDAADP---ERFQESKEELDSLLSD-EELANVPFLILGNK 129 (190)
T ss_pred HHhccCCEEEEEEECCcH---HHHHHHHHHHHHHHcC-ccccCCCEEEEEeC
Confidence 346789999999887764 22333333332 11 34567899888754
No 132
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=38.76 E-value=59 Score=23.46 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=33.3
Q ss_pred cCeEEEEcccCCCCCc--HHHHHHHHhhcCCCCcCCCCeEEEEeec--CCCChHHH
Q 035766 12 FICFHLLTDLFSSFVQ--GPLKNAIDWASRPPNVWADKAAAIVSAA--GGSGGARA 63 (128)
Q Consensus 12 AD~ii~~tPeYn~~i~--~~lKn~iD~l~~~~~~~~~Kp~~~v~~s--g~~gg~~a 63 (128)
.+..++..|...+..| ..+..+.|++.. ..-+||+|++=..+ |++|..-+
T Consensus 71 ~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~--~~~~g~kVvVHC~~GigRSgtvia 124 (180)
T COG2453 71 DGIQVLHLPILDGTVPDLEDLDKIVDFIEE--ALSKGKKVVVHCQGGIGRSGTVIA 124 (180)
T ss_pred CCceeeeeeecCCCCCcHHHHHHHHHHHHH--HHhcCCeEEEEcCCCCchHHHHHH
Confidence 4556788899999999 889999999974 23456555544444 44444443
No 133
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=38.74 E-value=28 Score=24.43 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=28.3
Q ss_pred HHhcCeEEEEcccCCCCCcHHHHHHHHhhcCC--CCcCCCCeEEEEeec
Q 035766 9 FLEFICFHLLTDLFSSFVQGPLKNAIDWASRP--PNVWADKAAAIVSAA 55 (128)
Q Consensus 9 i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~--~~~~~~Kp~~~v~~s 55 (128)
++.||++|++.. .+-+..+.++..|+... .....+.|+.+++.=
T Consensus 78 ~~~ad~ii~v~D---~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK 123 (175)
T smart00177 78 YTNTQGLIFVVD---SNDRDRIDEAREELHRMLNEDELRDAVILVFANK 123 (175)
T ss_pred hCCCCEEEEEEE---CCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeC
Confidence 688999999754 34455566666665421 023567899888853
No 134
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=38.72 E-value=47 Score=23.49 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=30.4
Q ss_pred ChhHHHHHHHhcCeEEEEcccCCCC-CcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 1 MWLLTYNTFLEFICFHLLTDLFSSF-VQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 1 ~~~~~~~~i~~AD~ii~~tPeYn~~-i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
+|..++ ..+|++|++..--+.. ++...+-+-+-+.. ..+.++|++++..=
T Consensus 74 ~w~~y~---~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~--~~~~~~piLIl~NK 124 (175)
T PF00025_consen 74 LWKSYF---QNADGIIFVVDSSDPERLQEAKEELKELLND--PELKDIPILILANK 124 (175)
T ss_dssp GGGGGH---TTESEEEEEEETTGGGGHHHHHHHHHHHHTS--GGGTTSEEEEEEES
T ss_pred cceeec---cccceeEEEEecccceeecccccchhhhcch--hhcccceEEEEecc
Confidence 366654 4799999998544322 33332222233333 46789999999864
No 135
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=38.59 E-value=69 Score=22.14 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=28.0
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCC--CCcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRP--PNVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~--~~~~~~Kp~~~v~~s 55 (128)
..+..||++|++..--+ +..+.++..|+..- .....++|+.+++.=
T Consensus 62 ~~~~~ad~ii~V~D~s~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 109 (169)
T cd04158 62 HYYLNTQAVVFVVDSSH---RDRVSEAHSELAKLLTEKELRDALLLIFANK 109 (169)
T ss_pred HHhccCCEEEEEEeCCc---HHHHHHHHHHHHHHhcChhhCCCCEEEEEeC
Confidence 34678999999987554 33444444444311 024566888888753
No 136
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=38.53 E-value=2.1e+02 Score=23.32 Aligned_cols=36 Identities=11% Similarity=0.011 Sum_probs=23.3
Q ss_pred CCCCeEEEEeec-CCCC-hHHHHHHHHHhhhhcCceee
Q 035766 44 WADKAAAIVSAA-GGSG-GARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 44 ~~~Kp~~~v~~s-g~~g-g~~a~~~L~~~l~~~g~~~~ 79 (128)
++|+.+++++.. +.+| +.+....+-..+..+|+.+.
T Consensus 168 l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~ 205 (357)
T TIGR03316 168 LKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVT 205 (357)
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEE
Confidence 678899999865 4444 34444445556777888654
No 137
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=37.64 E-value=2e+02 Score=22.54 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=51.1
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCce---eeccce
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLH---FVNKPE 83 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~---~~~~~~ 83 (128)
+.+.++|.|+++.. |..+.+.+-.+. +.+.+|.+.-+.++ .. ...|++.+. +.. ++|...
T Consensus 58 ~~~~~advv~LavK------Pq~~~~vl~~l~---~~~~~~lvISiaAG-v~-----~~~l~~~l~--~~~vvR~MPNt~ 120 (266)
T COG0345 58 EAVEEADVVFLAVK------PQDLEEVLSKLK---PLTKDKLVISIAAG-VS-----IETLERLLG--GLRVVRVMPNTP 120 (266)
T ss_pred HHHhhCCEEEEEeC------hHhHHHHHHHhh---cccCCCEEEEEeCC-CC-----HHHHHHHcC--CCceEEeCCChH
Confidence 56778999999986 566777777774 24556655444433 21 345666665 333 334333
Q ss_pred eeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHH
Q 035766 84 YFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLAL 117 (128)
Q Consensus 84 ~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l 117 (128)
..++.. ...+..+ ...+++.++.++.+++.+
T Consensus 121 a~vg~g--~t~i~~~-~~~~~~~~~~v~~l~~~~ 151 (266)
T COG0345 121 ALVGAG--VTAISAN-ANVSEEDKAFVEALLSAV 151 (266)
T ss_pred HHHcCc--ceeeecC-ccCCHHHHHHHHHHHHhc
Confidence 333321 3344322 333677777777776654
No 138
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=37.47 E-value=35 Score=23.18 Aligned_cols=43 Identities=12% Similarity=0.003 Sum_probs=27.9
Q ss_pred HHhcCeEEEEcccCC-CCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 9 FLEFICFHLLTDLFS-SFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 9 i~~AD~ii~~tPeYn-~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
+..||+++++...-+ .+.....+.+++++.. ...++|+.+++.
T Consensus 69 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~ivv~n 112 (171)
T cd00157 69 YPNTDVFLICFSVDSPSSFENVKTKWIPEIRH---YCPNVPIILVGT 112 (171)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---hCCCCCEEEEEc
Confidence 467999999988776 3444444445555542 234788888875
No 139
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=37.35 E-value=93 Score=21.59 Aligned_cols=44 Identities=9% Similarity=0.001 Sum_probs=29.2
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
.+..||++|++...-+ +..+.++..|+..- ....++|+.+++.=
T Consensus 74 ~~~~~d~~llv~d~~~---~~s~~~~~~~~~~~-~~~~~~p~iiv~NK 117 (169)
T cd01892 74 ELAACDVACLVYDSSD---PKSFSYCAEVYKKY-FMLGEIPCLFVAAK 117 (169)
T ss_pred hhhcCCEEEEEEeCCC---HHHHHHHHHHHHHh-ccCCCCeEEEEEEc
Confidence 3589999999976533 56777777776421 11236888888753
No 140
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=37.35 E-value=65 Score=27.45 Aligned_cols=69 Identities=12% Similarity=-0.062 Sum_probs=43.5
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHH-HHHHHHhhcCC------------CCcCCC-CeEEEEeecCCCChHHHHHHHHHhh
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGP-LKNAIDWASRP------------PNVWAD-KAAAIVSAAGGSGGARAQYHLRQIG 71 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~-lKn~iD~l~~~------------~~~~~~-Kp~~~v~~sg~~gg~~a~~~L~~~l 71 (128)
.-|+..||.+.+.||.+...-+.. ...+.|.+..+ .+.|.+ ||+.-+.++|.+.+ ++..++
T Consensus 317 L~RLaGaD~ih~~t~~gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~k~~~Pv~SGG~~~g-----~vp~~~ 391 (475)
T CHL00040 317 ALRMSGGDHIHAGTVVGKLEGEREMTLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGGIHVW-----HMPALT 391 (475)
T ss_pred HHHHcCCCccccCCcccCCCCCHHHHHHHHHHHHhhhhhccccccccccccccCCCCceEecCCCCCHH-----HHHHHH
Confidence 458999999999999555444422 44565655432 034766 89988887765433 344556
Q ss_pred hhcCceee
Q 035766 72 VYLDLHFV 79 (128)
Q Consensus 72 ~~~g~~~~ 79 (128)
..+|-.++
T Consensus 392 ~~~G~Dvi 399 (475)
T CHL00040 392 EIFGDDSV 399 (475)
T ss_pred HHhCCCee
Confidence 67775443
No 141
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=36.84 E-value=84 Score=22.03 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=22.8
Q ss_pred EcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecC
Q 035766 18 LTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAG 56 (128)
Q Consensus 18 ~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg 56 (128)
+||.+---.|...+.++++.. -.++||.+.+++-|.
T Consensus 3 ~~~~~~p~t~~a~~~ll~~~~---~~~~gk~v~VvGrs~ 38 (140)
T cd05212 3 CTPLFVSPVAKAVKELLNKEG---VRLDGKKVLVVGRSG 38 (140)
T ss_pred CCCcccccHHHHHHHHHHHcC---CCCCCCEEEEECCCc
Confidence 456653334444444444443 479999999999884
No 142
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=36.72 E-value=53 Score=23.32 Aligned_cols=46 Identities=13% Similarity=0.212 Sum_probs=28.1
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcC-CCCeEEEEee
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVW-ADKAAAIVSA 54 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~-~~Kp~~~v~~ 54 (128)
...+..||++|++...-+ +..+.++..|+....... .+.|+.+++.
T Consensus 68 ~~~~~~ad~~i~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~N 114 (191)
T cd04112 68 HAYYRDAHALLLLYDITN---KASFDNIRAWLTEIKEYAQEDVVIMLLGN 114 (191)
T ss_pred HHHccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 445678999999987644 455665555553211112 3678888774
No 143
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=36.59 E-value=93 Score=23.93 Aligned_cols=26 Identities=0% Similarity=-0.180 Sum_probs=18.6
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHH
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKN 32 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn 32 (128)
+.+.+||.||.+.||-...-...++.
T Consensus 79 ~~~~~aD~Vieavpe~~~~k~~~~~~ 104 (292)
T PRK07530 79 EDLADCDLVIEAATEDETVKRKIFAQ 104 (292)
T ss_pred HHhcCCCEEEEcCcCCHHHHHHHHHH
Confidence 56788999999999865444444443
No 144
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=36.40 E-value=49 Score=24.32 Aligned_cols=40 Identities=8% Similarity=0.160 Sum_probs=28.7
Q ss_pred EEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CCC
Q 035766 15 FHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GGS 58 (128)
Q Consensus 15 ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~ 58 (128)
+-+.+|.+.....-.++...+.+. ......+.+||+| |++
T Consensus 31 ~~~~~p~l~~~p~~a~~~l~~~i~----~~~~~~~~liGSSlGG~ 71 (187)
T PF05728_consen 31 IQYPCPDLPPFPEEAIAQLEQLIE----ELKPENVVLIGSSLGGF 71 (187)
T ss_pred ceEECCCCCcCHHHHHHHHHHHHH----hCCCCCeEEEEEChHHH
Confidence 456789888887777777777774 4444449999999 643
No 145
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.20 E-value=44 Score=27.99 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=33.4
Q ss_pred HhcCeEEEEcccC--CCCCcHH--HHHH-HHhhcCCC-CcCCCCeEEEEeecCCCChHHHHHHHHHh
Q 035766 10 LEFICFHLLTDLF--SSFVQGP--LKNA-IDWASRPP-NVWADKAAAIVSAAGGSGGARAQYHLRQI 70 (128)
Q Consensus 10 ~~AD~ii~~tPeY--n~~i~~~--lKn~-iD~l~~~~-~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~ 70 (128)
.+|--+|++|--- |-.+||. +||= .-|+...+ +.|+||.|++++ |+..|..|.-.|..+
T Consensus 312 LkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIG--GGNSGvEAAIDLAGi 376 (520)
T COG3634 312 LKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIG--GGNSGVEAAIDLAGI 376 (520)
T ss_pred eccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEEC--CCcchHHHHHhHHhh
Confidence 3455667776543 4456663 3331 12332222 789999999999 444555554444433
No 146
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=36.17 E-value=63 Score=21.80 Aligned_cols=46 Identities=11% Similarity=0.007 Sum_probs=27.0
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
...+..+|+++++...-+..-...+++++..+.. .-.++|+.+++.
T Consensus 70 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~p~ilv~n 115 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASFENCSRWVNKVRT---ASKHMPGVLVGN 115 (164)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHH---hCCCCCEEEEEE
Confidence 3456789999999876553323334444444432 224678777765
No 147
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=35.86 E-value=1.1e+02 Score=25.50 Aligned_cols=68 Identities=12% Similarity=-0.090 Sum_probs=45.1
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHH-HHHHHHhhcCCCCcCCC-CeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGP-LKNAIDWASRPPNVWAD-KAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~-lKn~iD~l~~~~~~~~~-Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
.-.-|+..||.+++.|+.=....+.. .+...|.+.. .+.+ ||+.-+.++|.+.+ ++..++..+|-.++
T Consensus 286 ~kl~RLaGaD~~~~~~~~Gk~~~~~~~~~~~~~~~~~---p~~~~k~~~Pv~sGG~~~~-----~~p~~~~~~G~Dvi 355 (407)
T TIGR03332 286 GKLLRYAGADFSLFPSPYGSVALEREDALAISKELTE---DDAPFKKTFAVPSAGIHPG-----MVPLIMRDFGIDHI 355 (407)
T ss_pred HHHHHhcCcCccccCCcccCCCCCHHHHHHHHHHHhc---cccCCCccEEecCCCcChh-----HHHHHHHHhCCceE
Confidence 34568899999999998444555543 5667788875 3545 89888887654432 45556677774443
No 148
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=35.74 E-value=69 Score=21.87 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=31.3
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-CcCCCCeEEEEeec
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-NVWADKAAAIVSAA 55 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-~~~~~Kp~~~v~~s 55 (128)
.+..+|++|++-..-+..-...++++++++.... ....+.|+.+++.=
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 117 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNK 117 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEC
Confidence 4668999999877666554445777777664211 12357888888754
No 149
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=35.53 E-value=1.2e+02 Score=25.13 Aligned_cols=69 Identities=14% Similarity=-0.075 Sum_probs=46.4
Q ss_pred hHHHHHHHhcCeEEEEcccCCCCCcH-HHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 3 LLTYNTFLEFICFHLLTDLFSSFVQG-PLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 3 ~~~~~~i~~AD~ii~~tPeYn~~i~~-~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
+.-.-|+..||.+++-||.=....+. ..+...|.+..+ .+ -|++.-+.++|.+.+ ++..+++.+|-.++
T Consensus 270 l~kl~RLaGaD~~~~~~~~Gk~~~~~~~~~~~~~~~~~~--~~-~k~~~Pv~sgG~~~g-----~vp~~~~~~G~Dvi 339 (391)
T cd08209 270 LGTLMRLAGADAVLFPSPYGSVALSKEEALAIAEALRRG--GA-FKGVFPVPSAGIHPG-----LVPQLLRDFGTDVI 339 (391)
T ss_pred HHHHHHHcCCCccccCCccCCcCCCHHHHHHHHHHHhCc--CC-CCCceEecCCCCChh-----HHHHHHHHhCCceE
Confidence 34467899999999999944455554 366777888763 33 799988887765433 34455666674443
No 150
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=35.29 E-value=1.1e+02 Score=20.08 Aligned_cols=47 Identities=9% Similarity=-0.043 Sum_probs=27.8
Q ss_pred hHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 3 LLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 3 ~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
......+..+|++|++..-.+ ..+..-+..+.++.+ .++|+.++..=
T Consensus 68 ~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~-----~~~piiiv~nK 114 (157)
T cd01894 68 EQAELAIEEADVILFVVDGRE-GLTPADEEIAKYLRK-----SKKPVILVVNK 114 (157)
T ss_pred HHHHHHHHhCCEEEEEEeccc-cCCccHHHHHHHHHh-----cCCCEEEEEEC
Confidence 344566788888888876544 233333455666642 24777666653
No 151
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=35.29 E-value=1.2e+02 Score=23.87 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=17.5
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHH
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNA 33 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~ 33 (128)
......||.||+++|... +.+.+|..
T Consensus 59 ~~~~~~aD~VivavPi~~--~~~~l~~l 84 (279)
T COG0287 59 AEAAAEADLVIVAVPIEA--TEEVLKEL 84 (279)
T ss_pred hhhcccCCEEEEeccHHH--HHHHHHHh
Confidence 355667899999999853 44444444
No 152
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=35.02 E-value=83 Score=21.22 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=25.7
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
.+..||++|++--.-+..-=..++++++++.+. ....++|+.+++.
T Consensus 69 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piviv~n 114 (163)
T cd04176 69 YIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRV-KGYEKVPIILVGN 114 (163)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEE
Confidence 357899999876543321001234444445321 1236789988875
No 153
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=34.89 E-value=78 Score=21.46 Aligned_cols=52 Identities=6% Similarity=-0.251 Sum_probs=30.5
Q ss_pred HHHHHHHhcCeEEEEcccCCC------CCcHHHHHHHHhhcCCCCc-----CCCCeEEEEeec
Q 035766 4 LTYNTFLEFICFHLLTDLFSS------FVQGPLKNAIDWASRPPNV-----WADKAAAIVSAA 55 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~------~i~~~lKn~iD~l~~~~~~-----~~~Kp~~~v~~s 55 (128)
.+.+.+..+|+++++.---+. ..-..+++....+...... +.++|+.++..-
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 129 (176)
T cd01881 67 QFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNK 129 (176)
T ss_pred HHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEc
Confidence 445667889998888765554 2223445555555321011 357888888854
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=34.78 E-value=96 Score=25.89 Aligned_cols=44 Identities=7% Similarity=-0.015 Sum_probs=31.5
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
....+.+||++|++..--++ .+.....+++++.+ .++|+.+++.
T Consensus 111 ~~~~~~~aD~il~VvD~~~~-~s~~~~~i~~~l~~-----~~~piilV~N 154 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVG-ATATDEAVARVLRR-----SGKPVILAAN 154 (472)
T ss_pred HHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHH-----cCCCEEEEEE
Confidence 44568899999999887765 45566778888853 3566666664
No 155
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=34.61 E-value=64 Score=22.07 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=27.4
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
..++.+|++|++...-+..--..++.+++.+.. ...++|+.+++.=
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~---~~~~~p~ivv~nK 113 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELRE---YRPEIPCIVVANK 113 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH---hCCCCcEEEEEEC
Confidence 346789999998775443222234444444432 2346888888764
No 156
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=34.45 E-value=2e+02 Score=21.65 Aligned_cols=50 Identities=20% Similarity=0.128 Sum_probs=27.7
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhh
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIG 71 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l 71 (128)
-..++|.||+++| |..++..+.-+.. ....+| .+++.+++.. .++|+..+
T Consensus 40 ~~~~aDiIiLaVk------P~~i~~vl~~l~~--~~~~~~--~ivS~~agi~----~~~l~~~~ 89 (245)
T TIGR00112 40 AVKEADVVFLAVK------PQDLEEVLSELKS--EKGKDK--LLISIAAGVT----LEKLSQLL 89 (245)
T ss_pred HHhhCCEEEEEeC------HHHHHHHHHHHhh--hccCCC--EEEEecCCCC----HHHHHHHc
Confidence 4578999999998 4455555544431 112234 5566663222 34555555
No 157
>PRK06545 prephenate dehydrogenase; Validated
Probab=34.23 E-value=1.1e+02 Score=24.52 Aligned_cols=17 Identities=12% Similarity=-0.191 Sum_probs=14.1
Q ss_pred HHHHHhcCeEEEEcccC
Q 035766 6 YNTFLEFICFHLLTDLF 22 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeY 22 (128)
.+.+.+||.||+++|..
T Consensus 55 ~~~~~~aDlVilavP~~ 71 (359)
T PRK06545 55 QRAAAEADLIVLAVPVD 71 (359)
T ss_pred HHHhcCCCEEEEeCCHH
Confidence 34568899999999985
No 158
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=34.20 E-value=1.4e+02 Score=21.87 Aligned_cols=74 Identities=8% Similarity=0.066 Sum_probs=45.5
Q ss_pred ChhHHHHHHHhcCeEEEE--cccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CCCChHHHHHHHHHhhhhcCce
Q 035766 1 MWLLTYNTFLEFICFHLL--TDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GGSGGARAQYHLRQIGVYLDLH 77 (128)
Q Consensus 1 ~~~~~~~~i~~AD~ii~~--tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~~~g~~ 77 (128)
||.++++.+ |+|+.+ +.+ -...++.=-..-|.+++ +.|.|.|++++|.- ...|+.. ... +...+|..
T Consensus 81 mWerycR~v---~aivY~VDaad-~~k~~~sr~EL~~LL~k--~~l~gip~LVLGnK~d~~~AL~-~~~---li~rmgL~ 150 (186)
T KOG0075|consen 81 MWERYCRGV---SAIVYVVDAAD-PDKLEASRSELHDLLDK--PSLTGIPLLVLGNKIDLPGALS-KIA---LIERMGLS 150 (186)
T ss_pred HHHHHhhcC---cEEEEEeecCC-cccchhhHHHHHHHhcc--hhhcCCcEEEecccccCccccc-HHH---HHHHhCcc
Confidence 688877654 555544 333 45566665556666777 58999999999987 4444322 222 34456776
Q ss_pred eecccee
Q 035766 78 FVNKPEY 84 (128)
Q Consensus 78 ~~~~~~~ 84 (128)
.+...++
T Consensus 151 sitdREv 157 (186)
T KOG0075|consen 151 SITDREV 157 (186)
T ss_pred ccccceE
Confidence 6644454
No 159
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=34.16 E-value=58 Score=22.68 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=29.0
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCC--CCcCCCCeEEEEeec
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRP--PNVWADKAAAIVSAA 55 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~--~~~~~~Kp~~~v~~s 55 (128)
-+..||++|++.---+ +..++++..|+... .....++|+.+++.=
T Consensus 73 ~~~~a~~ii~v~D~t~---~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 119 (168)
T cd04149 73 YYTGTQGLIFVVDSAD---RDRIDEARQELHRIINDREMRDALLLVFANK 119 (168)
T ss_pred HhccCCEEEEEEeCCc---hhhHHHHHHHHHHHhcCHhhcCCcEEEEEEC
Confidence 3578999999876554 34566666665321 023567898888853
No 160
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=34.03 E-value=1.4e+02 Score=22.36 Aligned_cols=63 Identities=17% Similarity=0.077 Sum_probs=32.4
Q ss_pred EEEEeecCCCChHHHHHHHHHhhhhcCceeeccceeeeccCCCCCccCCCCCCCCH-HHHHHHHHHHH
Q 035766 49 AAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEYFLNAFQPPAKFDSDGNLIDE-ESKEKLKAVLL 115 (128)
Q Consensus 49 ~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i~~~~~~~~fd~~g~l~~~-~~~~~l~~~~~ 115 (128)
+++++.+-.+||.-.+..+ .+++.+|....+.+...++.. ...|. .....++ .+.++++.+++
T Consensus 7 vl~i~g~d~~ggaG~~adi-~~~~~~g~~~~~v~Ta~~~q~--~~~~~-~~~~~~~~~~~~q~~~~~~ 70 (266)
T PRK06427 7 ALTIAGSDSGGGAGIQADL-KTFQALGVYGMSAITALTAQN--TLGVQ-RVHPIPPEFVAAQLDAVFS 70 (266)
T ss_pred EEEEeecCCCCcHHHHHHH-HHHHHcCCEEeeeeeEEEeec--CCCee-EEEeCCHHHHHHHHHHHHh
Confidence 5555555445554433334 467888998887666655421 22332 3333443 33555554443
No 161
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=34.01 E-value=76 Score=25.90 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=31.9
Q ss_pred EEcccCCCCCcHHHHHHHHhhcCCCCcCC--CCeEEEEeecCCCC
Q 035766 17 LLTDLFSSFVQGPLKNAIDWASRPPNVWA--DKAAAIVSAAGGSG 59 (128)
Q Consensus 17 ~~tPeYn~~i~~~lKn~iD~l~~~~~~~~--~Kp~~~v~~sg~~g 59 (128)
|++-.+-.+.-...|+-|||+... ..+. -|.|+++|+|.++|
T Consensus 11 ic~t~HP~GCe~nV~~QI~y~k~~-gp~~ngPKkVLviGaSsGyG 54 (398)
T COG3007 11 ICRTAHPYGCEANVLQQIDYVKAA-GPIKNGPKKVLVIGASSGYG 54 (398)
T ss_pred EEeccCCccHHHHHHHHHHHHHhc-CCccCCCceEEEEecCCccc
Confidence 455567778888999999999754 4554 58999999994455
No 162
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=33.71 E-value=95 Score=24.90 Aligned_cols=52 Identities=13% Similarity=-0.060 Sum_probs=32.4
Q ss_pred hHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 3 LLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 3 ~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
.+.++.++.+|++|++...-+...-..++.+++-+..-...+.+||+.++..
T Consensus 228 ~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~N 279 (335)
T PRK12299 228 HRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLN 279 (335)
T ss_pred HHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEE
Confidence 3556778889999999876554422334444444432113466889888875
No 163
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=33.01 E-value=73 Score=20.66 Aligned_cols=30 Identities=13% Similarity=0.020 Sum_probs=16.8
Q ss_pred cCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCcee
Q 035766 43 VWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHF 78 (128)
Q Consensus 43 ~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~ 78 (128)
.++||+++++|.+ .-+...++.++. .|+.+
T Consensus 4 ~l~~~~vlVvGgG-----~va~~k~~~Ll~-~gA~v 33 (103)
T PF13241_consen 4 DLKGKRVLVVGGG-----PVAARKARLLLE-AGAKV 33 (103)
T ss_dssp --TT-EEEEEEES-----HHHHHHHHHHCC-CTBEE
T ss_pred EcCCCEEEEECCC-----HHHHHHHHHHHh-CCCEE
Confidence 3689999999943 444455555554 35544
No 164
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=32.95 E-value=43 Score=25.77 Aligned_cols=44 Identities=7% Similarity=0.140 Sum_probs=25.6
Q ss_pred eEEEEcccCCCCCcHHH-HHHHHhhcC-CC---CcCCCCeEEEEeecCC
Q 035766 14 CFHLLTDLFSSFVQGPL-KNAIDWASR-PP---NVWADKAAAIVSAAGG 57 (128)
Q Consensus 14 ~ii~~tPeYn~~i~~~l-Kn~iD~l~~-~~---~~~~~Kp~~~v~~sg~ 57 (128)
+||.+|..+...+...+ ++....-.. .. ..+.||+|.++..+|.
T Consensus 5 gII~gsgl~~~~l~~~~~~~~~~~~~g~~~~~~G~~~g~~Vv~l~~~G~ 53 (261)
T PRK08666 5 AIIGGSGVYDPKILENIREETVETPYGEVKVKIGTYAGEEVAFLARHGE 53 (261)
T ss_pred EEEecCCCCccchhhhcccceeEeeCCCCEEEEEEECCEEEEEEeCCCC
Confidence 67888888775555544 322211110 00 5788999997775543
No 165
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=32.93 E-value=89 Score=21.81 Aligned_cols=46 Identities=9% Similarity=-0.073 Sum_probs=26.6
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
.+..+|++|++--.-+..--..++++++++.+. ..-.+.|+.+++.
T Consensus 70 ~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~-~~~~~~piilvgN 115 (172)
T cd04141 70 YMRCGEGFIICYSVTDRHSFQEASEFKKLITRV-RLTEDIPLVLVGN 115 (172)
T ss_pred HhhcCCEEEEEEECCchhHHHHHHHHHHHHHHh-cCCCCCCEEEEEE
Confidence 456899999985544433333344444445431 1224688888875
No 166
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=32.81 E-value=42 Score=24.79 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=28.1
Q ss_pred HHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 9 FLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 9 i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
+..+|++|++ |+-+=+..+.+.-+|+..-.....+.|+.+++.
T Consensus 83 ~~~~~~~ilv---fD~~~~~s~~~i~~w~~~i~~~~~~~piilvgN 125 (219)
T PLN03071 83 YIHGQCAIIM---FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125 (219)
T ss_pred cccccEEEEE---EeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 5689999997 555556677776667542111235678888875
No 167
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=32.51 E-value=64 Score=22.13 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=29.2
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCC--CCcCCCCeEEEEeec
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRP--PNVWADKAAAIVSAA 55 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~--~~~~~~Kp~~~v~~s 55 (128)
.++.||++|++.-.- =+..+.++.+|+..- ...+.++|+.+++.=
T Consensus 64 ~~~~ad~~i~v~D~~---~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 110 (159)
T cd04150 64 YFQNTQGLIFVVDSN---DRERIGEAREELQRMLNEDELRDAVLLVFANK 110 (159)
T ss_pred HhcCCCEEEEEEeCC---CHHHHHHHHHHHHHHHhcHHhcCCCEEEEEEC
Confidence 368899999985543 355677777666421 124467888888754
No 168
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=32.42 E-value=1.1e+02 Score=25.54 Aligned_cols=69 Identities=14% Similarity=0.094 Sum_probs=44.4
Q ss_pred HHHHHhcCeEEEEcccCCCCCc-HHHHHHHHhhcCCC-----------CcCCC-CeEEEEeecCCCChHHHHHHHHHhhh
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQ-GPLKNAIDWASRPP-----------NVWAD-KAAAIVSAAGGSGGARAQYHLRQIGV 72 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~-~~lKn~iD~l~~~~-----------~~~~~-Kp~~~v~~sg~~gg~~a~~~L~~~l~ 72 (128)
.-|+..||.+++.|+.=....+ ...+...|.+..+. +.|.+ ||+.-+.++|.+.+ ++..+++
T Consensus 282 l~RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~Pv~sGG~~~~-----~~p~~~~ 356 (414)
T cd08206 282 LARLIGVDHIHTGTVVGKLEGDPSEVKGIADMLREDEVEGDLSRIFFNQDWGGMKPVFPVASGGLHPG-----RMPALIE 356 (414)
T ss_pred HHHHcCCCccccCCCccCCCCCHHHHHHHHHHhhcccccCCccccccccccccCCCcEEecCCccChh-----HHHHHHH
Confidence 5689999999999995333333 34666777765420 24666 89888887655433 3555667
Q ss_pred hcCceee
Q 035766 73 YLDLHFV 79 (128)
Q Consensus 73 ~~g~~~~ 79 (128)
.+|-.++
T Consensus 357 ~~G~Dvi 363 (414)
T cd08206 357 ILGDDVI 363 (414)
T ss_pred HhCCceE
Confidence 7785444
No 169
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=32.37 E-value=81 Score=21.42 Aligned_cols=46 Identities=4% Similarity=-0.073 Sum_probs=24.7
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
..+..+|+++++...-+..--..++++++.+.+ ..-.+.|+.+++.
T Consensus 71 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~--~~~~~~p~ivv~n 116 (165)
T cd01864 71 SYYRSANGAIIAYDITRRSSFESVPHWIEEVEK--YGASNVVLLLIGN 116 (165)
T ss_pred HHhccCCEEEEEEECcCHHHHHhHHHHHHHHHH--hCCCCCcEEEEEE
Confidence 345678999998555443222334444444432 1224567777765
No 170
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=32.15 E-value=26 Score=27.39 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=14.2
Q ss_pred hcCeEEEEccc----CCCCCcHH
Q 035766 11 EFICFHLLTDL----FSSFVQGP 29 (128)
Q Consensus 11 ~AD~ii~~tPe----Yn~~i~~~ 29 (128)
.+||+|++||- ||.|--|.
T Consensus 165 r~DGliVsTPTGSTAY~lSAGGP 187 (281)
T COG0061 165 RGDGLIVSTPTGSTAYNLSAGGP 187 (281)
T ss_pred ecCEEEEEcCCcHHHHhhhcCCC
Confidence 58999999996 66555444
No 171
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=31.96 E-value=1.8e+02 Score=25.21 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=39.9
Q ss_pred HHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee--ccceeeeccCCCCCccCCCCCCCCHHH
Q 035766 29 PLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV--NKPEYFLNAFQPPAKFDSDGNLIDEES 106 (128)
Q Consensus 29 ~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~--~~~~~~i~~~~~~~~fd~~g~l~~~~~ 106 (128)
.++.+++.+..+ +..+.-+ +|+++|..|=......+..+|+..|..+= ..|.+. . ..+.+.-+|..++++.
T Consensus 44 rm~~~L~~LG~p-~~~~~l~--vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~--~--~rERiring~~Is~e~ 116 (530)
T PLN02881 44 LLFDYLKILELE-EAISRLK--VIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLI--D--VRERFRLDGVDISEEK 116 (530)
T ss_pred HHHHHHHHcCCC-chhhcCC--EEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccC--c--ceeEEEECCEecCHHH
Confidence 466777777654 2222222 55555555545566778888887775432 222221 1 2566766788777643
No 172
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=31.83 E-value=2.4e+02 Score=21.66 Aligned_cols=26 Identities=4% Similarity=-0.008 Sum_probs=18.6
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhc
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWAS 38 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~ 38 (128)
+.+..+|.+|+++|.+ .++.+++-+.
T Consensus 67 ~~~~~~D~vi~~v~~~------~~~~v~~~l~ 92 (325)
T PRK00094 67 EALADADLILVAVPSQ------ALREVLKQLK 92 (325)
T ss_pred HHHhCCCEEEEeCCHH------HHHHHHHHHH
Confidence 4567899999999963 4555555553
No 173
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=31.77 E-value=56 Score=25.66 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=32.3
Q ss_pred hcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcC--CCCeEEEEeec-CCCChHHHHHHHHHhhhhcCceeec
Q 035766 11 EFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVW--ADKAAAIVSAA-GGSGGARAQYHLRQIGVYLDLHFVN 80 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~--~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~~~g~~~~~ 80 (128)
+.|.+|++|| |...||.-|.= ..| .|+|+.++|-+ |. .+-+.|..- .+|-.+++
T Consensus 59 ~pdf~I~isP--N~~~PGP~~AR--------E~l~~~~iP~IvI~D~p~~----k~kd~l~~~--g~GYIivk 115 (276)
T PF01993_consen 59 DPDFVIVISP--NAAAPGPTKAR--------EMLSAKGIPCIVISDAPTK----KAKDALEEE--GFGYIIVK 115 (276)
T ss_dssp --SEEEEE-S---TTSHHHHHHH--------HHHHHSSS-EEEEEEGGGG----GGHHHHHHT--T-EEEEET
T ss_pred CCCEEEEECC--CCCCCCcHHHH--------HHHHhCCCCEEEEcCCCch----hhHHHHHhc--CCcEEEEe
Confidence 5799999999 89999987653 344 78999999987 42 223444432 44555554
No 174
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=31.73 E-value=75 Score=25.10 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=20.9
Q ss_pred cCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 43 VWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 43 ~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
++.||.++|+|.+. -| .. +-..+..+||+++
T Consensus 142 ~L~gktvGIiG~G~-IG-~~----vA~~~~~fgm~V~ 172 (311)
T PRK08410 142 EIKGKKWGIIGLGT-IG-KR----VAKIAQAFGAKVV 172 (311)
T ss_pred ccCCCEEEEECCCH-HH-HH----HHHHHhhcCCEEE
Confidence 68999999999872 22 22 2233557799877
No 175
>PLN02511 hydrolase
Probab=31.46 E-value=78 Score=25.60 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=28.3
Q ss_pred CCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHH
Q 035766 22 FSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHL 67 (128)
Q Consensus 22 Yn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L 67 (128)
|+.+...-++.++|++.. .+.++++.++|.| .||..+..++
T Consensus 151 ~~~~~~~Dl~~~i~~l~~---~~~~~~~~lvG~S--lGg~i~~~yl 191 (388)
T PLN02511 151 YSASFTGDLRQVVDHVAG---RYPSANLYAAGWS--LGANILVNYL 191 (388)
T ss_pred EcCCchHHHHHHHHHHHH---HCCCCCEEEEEec--hhHHHHHHHH
Confidence 334556678899999974 5667899999999 2354554444
No 176
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=31.40 E-value=74 Score=19.90 Aligned_cols=26 Identities=15% Similarity=-0.041 Sum_probs=17.7
Q ss_pred hhHHHHHHHhcCeEEEEcccCCCCCc
Q 035766 2 WLLTYNTFLEFICFHLLTDLFSSFVQ 27 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPeYn~~i~ 27 (128)
+..|++.|.++|.+|...-.--|++|
T Consensus 43 ~~~cl~~v~~cDifI~ilG~rYG~~~ 68 (83)
T PF13271_consen 43 LEICLKEVDECDIFILILGNRYGSVP 68 (83)
T ss_pred HHHHHHHHhhCCEEEEeeccccCCCC
Confidence 45677888888877776655555555
No 177
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=31.24 E-value=1e+02 Score=20.75 Aligned_cols=46 Identities=7% Similarity=0.001 Sum_probs=26.7
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHH-hhcCCCCcCCCCeEEEEeec
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAID-WASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD-~l~~~~~~~~~Kp~~~v~~s 55 (128)
-++.+|++|++...-+..-.....+.+. ++.. ....++|+.+++.=
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piiiv~nK 109 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEE--EELKGAVLLVFANK 109 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhc--hhhcCCcEEEEEeC
Confidence 3678999999887655321111223222 2222 24568999998864
No 178
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=31.01 E-value=1e+02 Score=20.36 Aligned_cols=48 Identities=10% Similarity=-0.075 Sum_probs=26.8
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
..++.+|+++++-...+..--..++.+++.+.+. ....++|+.+++.=
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~-~~~~~~piivv~nK 115 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRV-KDSDDVPMVLVGNK 115 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEC
Confidence 3456799999887665532222333344444321 12357888887753
No 179
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=30.98 E-value=2.2e+02 Score=20.96 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=29.1
Q ss_pred CcHHHHHHHHhhcCCC-----------CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCce
Q 035766 26 VQGPLKNAIDWASRPP-----------NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLH 77 (128)
Q Consensus 26 i~~~lKn~iD~l~~~~-----------~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~ 77 (128)
+|..++.+++++.... ..+.|+++.++.++ .|...+...+..++...+..
T Consensus 9 ~~~E~~~l~~~~~~~~~~~~~~~~~~~g~~~g~~v~v~~tG--~G~~~aa~~~~~li~~~~~~ 69 (230)
T PRK05584 9 MEEEVTLLLDKLENAQTITLAGREFYTGTLHGHEVVLVLSG--IGKVAAALTATILIEHFKVD 69 (230)
T ss_pred CHHHHHHHHHHhhccceEecCCcEEEEEEECCEEEEEEECC--cCHHHHHHHHHHHHHhcCCC
Confidence 4556667777765221 46789999998766 23444444444455444544
No 180
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=30.88 E-value=28 Score=22.39 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=24.7
Q ss_pred HHhcCeEEEEcccCCCCCcHHHHH---HHHhhcCCCCcCCCCeEEEEee
Q 035766 9 FLEFICFHLLTDLFSSFVQGPLKN---AIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 9 i~~AD~ii~~tPeYn~~i~~~lKn---~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
+..+|++|++--..+ +..+.+ .++|+..-...-.+-|+.+++.
T Consensus 71 ~~~~d~~ilv~D~s~---~~s~~~~~~~~~~l~~~~~~~~~~piilv~n 116 (119)
T PF08477_consen 71 LKKADAVILVYDLSD---PESLEYLSQLLKWLKNIRKRDKNIPIILVGN 116 (119)
T ss_dssp HHHSCEEEEEEECCG---HHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE
T ss_pred hhcCcEEEEEEcCCC---hHHHHHHHHHHHHHHHHHccCCCCCEEEEEe
Confidence 788999999864444 344444 4666642101123477777663
No 181
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=30.83 E-value=1.1e+02 Score=19.99 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=27.6
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcC-CCCeEEEEeec
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVW-ADKAAAIVSAA 55 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~-~~Kp~~~v~~s 55 (128)
...++++|++|++..-.+ +..+..+-.|+......- .++|+.+++.=
T Consensus 67 ~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 114 (159)
T cd00154 67 PSYYRGAHGAILVYDITN---RESFENLDKWLKELKEYAPENIPIILVGNK 114 (159)
T ss_pred HHHhcCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCcEEEEEEc
Confidence 445678999999988766 444444444443210111 46788777653
No 182
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.69 E-value=27 Score=27.55 Aligned_cols=18 Identities=11% Similarity=-0.119 Sum_probs=13.3
Q ss_pred hcCeEEEEccc----CCCCCcH
Q 035766 11 EFICFHLLTDL----FSSFVQG 28 (128)
Q Consensus 11 ~AD~ii~~tPe----Yn~~i~~ 28 (128)
.+||+|++||- ||.|-=|
T Consensus 176 ~~DGlIVSTPTGSTAYslSAGG 197 (287)
T PRK14077 176 FGDGVIVATPAGSTAYNMSANG 197 (287)
T ss_pred EcCEEEEeCCCchhHhHhhcCC
Confidence 48999999996 5554444
No 183
>KOG1393 consensus Hydroxymethylglutaryl-CoA synthase [Lipid transport and metabolism]
Probab=30.50 E-value=57 Score=27.37 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 25 FVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 25 ~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
+=+.+|-|++||+.. +.|.||-+.++..
T Consensus 126 GGtaALfnavnWiES--ssWDGr~aivV~g 153 (462)
T KOG1393|consen 126 GGTAALFNAVNWIES--SSWDGRYAIVVCG 153 (462)
T ss_pred ccHHHHHHHhhhhhh--cccCCceeEEEEe
Confidence 457899999999976 6899998887763
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=30.49 E-value=1.2e+02 Score=24.60 Aligned_cols=45 Identities=9% Similarity=-0.045 Sum_probs=30.2
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
+....+.+||++|++..--+ +++..-....+|+.+ .++|+.++..
T Consensus 73 ~~~~~~~~ad~il~vvd~~~-~~~~~~~~~~~~l~~-----~~~piilv~N 117 (435)
T PRK00093 73 QAELAIEEADVILFVVDGRA-GLTPADEEIAKILRK-----SNKPVILVVN 117 (435)
T ss_pred HHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHH-----cCCcEEEEEE
Confidence 45567889999999987655 456666677788753 1455555543
No 185
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=30.10 E-value=1.2e+02 Score=23.17 Aligned_cols=49 Identities=14% Similarity=0.086 Sum_probs=27.7
Q ss_pred HHHHHHhcCeEEEEc----c----cCC------CCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 5 TYNTFLEFICFHLLT----D----LFS------SFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 5 ~~~~i~~AD~ii~~t----P----eYn------~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
-.+.+++||.|+... + -++ ......++..++.+.. ..-+||.|+++..+
T Consensus 27 A~~~L~~advv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~--~~~~g~~Vv~L~sG 89 (257)
T PRK15473 27 GYRLLQQAQVVIYAGSLINTELLDYCPAQAECHDSAELHLEQIIDLMEA--GVKAGKTVVRLQTG 89 (257)
T ss_pred HHHHHHhCCEEEEecccCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHH--HHHCCCeEEEEeCc
Confidence 367899999998642 1 011 0112234555555532 12368899999866
No 186
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=30.09 E-value=1.9e+02 Score=22.53 Aligned_cols=19 Identities=0% Similarity=-0.302 Sum_probs=15.0
Q ss_pred HHHHHHhcCeEEEEcccCC
Q 035766 5 TYNTFLEFICFHLLTDLFS 23 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn 23 (128)
+.+.++++|.++.++||.-
T Consensus 76 ~~~a~~~ad~Vi~avpe~~ 94 (308)
T PRK06129 76 LADAVADADYVQESAPENL 94 (308)
T ss_pred HHHhhCCCCEEEECCcCCH
Confidence 3456789999999998873
No 187
>TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes.
Probab=29.89 E-value=45 Score=28.13 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=29.2
Q ss_pred ccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CC
Q 035766 20 DLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GG 57 (128)
Q Consensus 20 PeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~ 57 (128)
-.|.+|+-..|-.+||.... ..+.||.+++.+++ |.
T Consensus 328 N~YtaSlyl~L~Sll~~~~~--~~~~g~ri~~fSYGSG~ 364 (454)
T TIGR01833 328 NMYTASLYGCLASLLSSKSA--QELAGKRVGMFSYGSGL 364 (454)
T ss_pred chhhhHHHHHHHHHHhhCCc--cccCCCEEEEEeccCCc
Confidence 36888889999999997642 36789999999998 53
No 188
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=29.72 E-value=1.8e+02 Score=21.10 Aligned_cols=65 Identities=9% Similarity=-0.036 Sum_probs=34.2
Q ss_pred HHHHHhcCeEEEEcc--cCCCCC--cHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcC
Q 035766 6 YNTFLEFICFHLLTD--LFSSFV--QGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLD 75 (128)
Q Consensus 6 ~~~i~~AD~ii~~tP--eYn~~i--~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g 75 (128)
.+.+.+||.++++.| ....+- -..++.+++-+.. .++...+.++-++-.-|... ..+++++...+
T Consensus 71 ~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~---~l~~~~lvV~~STvppGtt~--~~~~~ile~~~ 139 (185)
T PF03721_consen 71 EEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAP---VLRPGDLVVIESTVPPGTTE--ELLKPILEKRS 139 (185)
T ss_dssp HHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHH---HHCSCEEEEESSSSSTTHHH--HHHHHHHHHHC
T ss_pred hhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHH---HHhhcceEEEccEEEEeeeh--Hhhhhhhhhhc
Confidence 456899999999986 333222 3668899999873 44433444444332345443 23455555444
No 189
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.68 E-value=1.7e+02 Score=22.54 Aligned_cols=26 Identities=0% Similarity=-0.290 Sum_probs=18.2
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHH
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKN 32 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn 32 (128)
+.++++|.||+++|+........++.
T Consensus 75 ~~~~~aDlVi~av~~~~~~~~~v~~~ 100 (311)
T PRK06130 75 AAVSGADLVIEAVPEKLELKRDVFAR 100 (311)
T ss_pred HHhccCCEEEEeccCcHHHHHHHHHH
Confidence 34778999999999876444444443
No 190
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=29.68 E-value=78 Score=25.37 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=22.3
Q ss_pred CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 42 NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 42 ~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
.++.||.++|+|.+ .-| . ++-..++.+||+++
T Consensus 138 ~el~gkTvGIiG~G-~IG-~----~va~~l~afgm~v~ 169 (324)
T COG0111 138 TELAGKTVGIIGLG-RIG-R----AVAKRLKAFGMKVI 169 (324)
T ss_pred ccccCCEEEEECCC-HHH-H----HHHHHHHhCCCeEE
Confidence 47789999999987 112 1 23345677899887
No 191
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=29.58 E-value=54 Score=23.05 Aligned_cols=20 Identities=5% Similarity=-0.232 Sum_probs=17.5
Q ss_pred hhHHHHHHHhcCeEEEEccc
Q 035766 2 WLLTYNTFLEFICFHLLTDL 21 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPe 21 (128)
|.++++++++||.++++...
T Consensus 10 ~~~~~~~i~~aD~il~v~D~ 29 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDA 29 (171)
T ss_pred HHHHHHHHhhCCEEEEEeec
Confidence 57899999999999988865
No 192
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=29.43 E-value=52 Score=22.79 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=27.0
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
-+..+|++|++-.. +=+..+.++-+|+..-.....++|+.+++.=
T Consensus 69 ~~~~~d~~i~v~d~---~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK 113 (166)
T cd00877 69 YYIGGQCAIIMFDV---TSRVTYKNVPNWHRDLVRVCGNIPIVLCGNK 113 (166)
T ss_pred HhcCCCEEEEEEEC---CCHHHHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 35679999998554 4455555555554321112237998888764
No 193
>PF04658 TAFII55_N: TAFII55 protein conserved region; InterPro: IPR006751 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. TAFII55 binds to TAFII250 and inhibits its acetyltransferase activity. The exact role of TAFII55 is currently unknown. The conserved region is situated towards the N-terminal of the protein [].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005669 transcription factor TFIID complex
Probab=29.39 E-value=33 Score=24.87 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=14.7
Q ss_pred cccCCCCCcHHHHHHHHh
Q 035766 19 TDLFSSFVQGPLKNAIDW 36 (128)
Q Consensus 19 tPeYn~~i~~~lKn~iD~ 36 (128)
.-+|++|++|.+||+--+
T Consensus 114 ~~~~~hGiTPP~knvrkR 131 (162)
T PF04658_consen 114 KFEWPHGITPPMKNVRKR 131 (162)
T ss_pred ccCCCCCCChhhhhHHHh
Confidence 446899999999999544
No 194
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=29.32 E-value=1.7e+02 Score=19.46 Aligned_cols=48 Identities=4% Similarity=-0.031 Sum_probs=26.9
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcC--CCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVW--ADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~--~~Kp~~~v~~s 55 (128)
..+..+|++|++..--+..--...++.++.+.+. ..+ .++|+.+++.=
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~iiv~NK 113 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNH-PDIKHRRVPILFFANK 113 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcC-cccccCCCCEEEEEeC
Confidence 3467899999986654422112334444444321 122 47888888764
No 195
>PRK10566 esterase; Provisional
Probab=29.32 E-value=2.2e+02 Score=20.57 Aligned_cols=52 Identities=8% Similarity=-0.019 Sum_probs=30.4
Q ss_pred hhHHHHHHHhcCeEEEEcccCCCC---Cc------------------HHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 2 WLLTYNTFLEFICFHLLTDLFSSF---VQ------------------GPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPeYn~~---i~------------------~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
|..+.+.+.+ .++.+..|.|-+. .+ ..+..+++|+... .....+.++++|.|
T Consensus 43 ~~~~~~~l~~-~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~i~v~G~S 115 (249)
T PRK10566 43 YSYFAVALAQ-AGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTLRAAIREE-GWLLDDRLAVGGAS 115 (249)
T ss_pred HHHHHHHHHh-CCCEEEEecCCcccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHhc-CCcCccceeEEeec
Confidence 4455555544 5777788888541 11 1123345666431 23466899999998
No 196
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=29.07 E-value=2.8e+02 Score=22.01 Aligned_cols=20 Identities=15% Similarity=0.003 Sum_probs=15.1
Q ss_pred hhhhcCceeeccceeeeccC
Q 035766 70 IGVYLDLHFVNKPEYFLNAF 89 (128)
Q Consensus 70 ~l~~~g~~~~~~~~~~i~~~ 89 (128)
.+..+|..|.+.|.+.+++.
T Consensus 23 ~lq~~G~~V~~vpTV~fSnH 42 (281)
T COG2240 23 PLQRLGLDVWAVPTVQFSNH 42 (281)
T ss_pred HHHHcCCceeeeceEEecCC
Confidence 46677888887788888763
No 197
>PLN00021 chlorophyllase
Probab=29.06 E-value=1.1e+02 Score=24.17 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=32.8
Q ss_pred hhHHHHHHHhcCeEEEEcccCCCC----CcHHH---HHHHHhhcCCC-------CcCCCCeEEEEeec-CC
Q 035766 2 WLLTYNTFLEFICFHLLTDLFSSF----VQGPL---KNAIDWASRPP-------NVWADKAAAIVSAA-GG 57 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPeYn~~----i~~~l---Kn~iD~l~~~~-------~~~~~Kp~~~v~~s-g~ 57 (128)
|..+.+.+.+. |++++.|.|-+. .+..+ ..+++|+.... ....-+++.++|.| |+
T Consensus 68 y~~l~~~Las~-G~~VvapD~~g~~~~~~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG 137 (313)
T PLN00021 68 YSQLLQHIASH-GFIVVAPQLYTLAGPDGTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGG 137 (313)
T ss_pred HHHHHHHHHhC-CCEEEEecCCCcCCCCchhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcch
Confidence 66777777655 788888885431 12222 44577775310 01233678999988 64
No 198
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=28.94 E-value=1.2e+02 Score=20.47 Aligned_cols=47 Identities=13% Similarity=0.038 Sum_probs=26.3
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
-+..+|++|++....+..--...+..+.-+.+. ....++|+.++..=
T Consensus 70 ~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK 116 (167)
T cd04160 70 YYAECHAIIYVIDSTDRERFEESKSALEKVLRN-EALEGVPLLILANK 116 (167)
T ss_pred HhCCCCEEEEEEECchHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEEc
Confidence 367899999987765532111223333333221 23467898887764
No 199
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.93 E-value=1.1e+02 Score=24.19 Aligned_cols=28 Identities=7% Similarity=-0.071 Sum_probs=23.8
Q ss_pred hcCeEEEEcccCCCCCcHHHHHHHHhhc
Q 035766 11 EFICFHLLTDLFSSFVQGPLKNAIDWAS 38 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~i~~~lKn~iD~l~ 38 (128)
.||++++++|-||..-...+...+-.+.
T Consensus 99 Gad~il~v~PyY~k~~~~gl~~hf~~ia 126 (299)
T COG0329 99 GADGILVVPPYYNKPSQEGLYAHFKAIA 126 (299)
T ss_pred CCCEEEEeCCCCcCCChHHHHHHHHHHH
Confidence 3999999999999998887777777765
No 200
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=28.92 E-value=1.3e+02 Score=22.07 Aligned_cols=38 Identities=5% Similarity=-0.203 Sum_probs=28.1
Q ss_pred hhHHHHHHHhcCeEEEEcc----cC------------CCCCcHHHHHHHHhhcC
Q 035766 2 WLLTYNTFLEFICFHLLTD----LF------------SSFVQGPLKNAIDWASR 39 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tP----eY------------n~~i~~~lKn~iD~l~~ 39 (128)
+....+..++||.+|+++= |. +..+|+.-+.+|+.+..
T Consensus 76 ~~~~~~~~~~aD~vIv~~~~~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~ 129 (227)
T PF01915_consen 76 IDEAVAAAKEADVVIVFVGRPSGEGNDNNTEGESDRSDLALPANQQELIKAVAA 129 (227)
T ss_dssp HHHHHHHHHCSSEEEEEEETTSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCEEEEeccccccccccccccccCCcccccchhhHHHHHHHHHH
Confidence 3456778889999888865 32 36788888888888853
No 201
>PRK06932 glycerate dehydrogenase; Provisional
Probab=28.90 E-value=82 Score=24.96 Aligned_cols=31 Identities=6% Similarity=0.137 Sum_probs=20.9
Q ss_pred cCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 43 VWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 43 ~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
++.||.++|+|.+. -| .. +-..++.+||.++
T Consensus 144 ~l~gktvgIiG~G~-IG-~~----va~~l~~fg~~V~ 174 (314)
T PRK06932 144 DVRGSTLGVFGKGC-LG-TE----VGRLAQALGMKVL 174 (314)
T ss_pred ccCCCEEEEECCCH-HH-HH----HHHHHhcCCCEEE
Confidence 67899999999871 22 22 2234567899876
No 202
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=28.78 E-value=95 Score=22.76 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=26.5
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-CcCCCCeEEEEee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-NVWADKAAAIVSA 54 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-~~~~~Kp~~~v~~ 54 (128)
.-++.||++|++--.- =+..++++-+|+..-. ....+.|+.+++.
T Consensus 68 ~y~~~ad~iIlVfDvt---d~~Sf~~l~~w~~~i~~~~~~~~piilVgN 113 (202)
T cd04120 68 AYYRSAKGIILVYDIT---KKETFDDLPKWMKMIDKYASEDAELLLVGN 113 (202)
T ss_pred HHhcCCCEEEEEEECc---CHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 3467899999975444 4556666655553110 1234677777764
No 203
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=28.52 E-value=2e+02 Score=21.02 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=23.4
Q ss_pred EEEEeecCCCChHHHHHHHHHhhhhcCceeeccceeeecc
Q 035766 49 AAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEYFLNA 88 (128)
Q Consensus 49 ~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i~~ 88 (128)
+++++-+-++||.-....+ .++..+|.+..+.+....+.
T Consensus 2 vl~i~g~d~~ggag~~adi-~~~~~~g~~~~~~~T~~~~~ 40 (242)
T cd01169 2 VLTIAGSDSSGGAGIQADL-KTFAALGVYGMSVITALTAQ 40 (242)
T ss_pred EEEEeeeCCCCHHHHHHHH-HHHHHcCCEecceeEEEEeE
Confidence 3455555445665544444 46788898887666665543
No 204
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=28.33 E-value=89 Score=21.14 Aligned_cols=47 Identities=13% Similarity=0.011 Sum_probs=25.3
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
.++.+|++|++-..=+..-...++++++.+.+. ....+.|+.+++.=
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~~piilv~nK 115 (164)
T cd04175 69 YMKNGQGFVLVYSITAQSTFNDLQDLREQILRV-KDTEDVPMILVGNK 115 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEC
Confidence 467789999865432211112334444444321 23467888888854
No 205
>PRK08818 prephenate dehydrogenase; Provisional
Probab=28.24 E-value=35 Score=27.94 Aligned_cols=20 Identities=5% Similarity=-0.147 Sum_probs=15.9
Q ss_pred hHHHHHHHhcCeEEEEcccC
Q 035766 3 LLTYNTFLEFICFHLLTDLF 22 (128)
Q Consensus 3 ~~~~~~i~~AD~ii~~tPeY 22 (128)
....+.+.+||.||+++|.-
T Consensus 43 ~~~~~~v~~aDlVilavPv~ 62 (370)
T PRK08818 43 LDPATLLQRADVLIFSAPIR 62 (370)
T ss_pred CCHHHHhcCCCEEEEeCCHH
Confidence 34456788999999999974
No 206
>PRK06487 glycerate dehydrogenase; Provisional
Probab=28.10 E-value=89 Score=24.76 Aligned_cols=31 Identities=6% Similarity=0.198 Sum_probs=21.0
Q ss_pred cCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 43 VWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 43 ~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
++.||.++|+|.+. -| .. +-..++.+||.++
T Consensus 145 ~l~gktvgIiG~G~-IG-~~----vA~~l~~fgm~V~ 175 (317)
T PRK06487 145 ELEGKTLGLLGHGE-LG-GA----VARLAEAFGMRVL 175 (317)
T ss_pred ccCCCEEEEECCCH-HH-HH----HHHHHhhCCCEEE
Confidence 68899999999871 22 22 2234567799876
No 207
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.09 E-value=2.8e+02 Score=22.69 Aligned_cols=65 Identities=9% Similarity=-0.097 Sum_probs=32.0
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHH----hhcCCC---CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCc
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAID----WASRPP---NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDL 76 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD----~l~~~~---~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~ 76 (128)
.+.+.|. |+.||-....-|-.. .+-+ .+++.. ..+..++ +++.+|..|=......|..+|+..|.
T Consensus 65 ~~~~~d~-vv~s~gi~~~~~~~~-~a~~~~i~v~~~~~~~~~~~~~~~--~I~VTGT~GKTTTt~ml~~iL~~~g~ 136 (459)
T PRK02705 65 WLDQPDL-VVVSPGIPWDHPTLV-ELRERGIEVIGEIELAWRALKHIP--WVGITGTNGKTTVTALLAHILQAAGL 136 (459)
T ss_pred HhhcCCE-EEECCCCCCCCHHHH-HHHHcCCcEEEhHHHHHHhhcCCC--EEEEeCCCchHHHHHHHHHHHHHcCC
Confidence 3566775 455888887765443 3322 222211 1222333 34444444444444556666766554
No 208
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=28.01 E-value=44 Score=28.07 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=24.0
Q ss_pred CCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CC
Q 035766 25 FVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GG 57 (128)
Q Consensus 25 ~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~ 57 (128)
.+|...|++|+++ .++.|.|+.++|++ ++
T Consensus 390 ~LP~~A~~Yi~~i----EE~~gvPV~iistGP~R 419 (430)
T COG0104 390 DLPENARKYIKRI----EELVGVPVTIISTGPER 419 (430)
T ss_pred HcCHHHHHHHHHH----HHHHCCCEEEEecCCCh
Confidence 4677888888888 58999999999998 53
No 209
>PRK08655 prephenate dehydrogenase; Provisional
Probab=27.27 E-value=2.4e+02 Score=23.45 Aligned_cols=17 Identities=0% Similarity=-0.177 Sum_probs=13.4
Q ss_pred HHHHHhcCeEEEEcccC
Q 035766 6 YNTFLEFICFHLLTDLF 22 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeY 22 (128)
.+.+.++|.+|+++|..
T Consensus 53 ~e~~~~aDvVIlavp~~ 69 (437)
T PRK08655 53 IDAAKDADIVIISVPIN 69 (437)
T ss_pred HHHhccCCEEEEecCHH
Confidence 34577899999999974
No 210
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=27.24 E-value=1.3e+02 Score=20.16 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=26.8
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHH---hhcCCCCcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAID---WASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD---~l~~~~~~~~~Kp~~~v~~s 55 (128)
..+..+|++|++-..-+ +..+++..+ ++.+. ..-.++|+.+++.=
T Consensus 67 ~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~-~~~~~~pii~v~nK 114 (164)
T smart00173 67 QYMRTGEGFLLVYSITD---RQSFEEIKKFREQILRV-KDRDDVPIVLVGNK 114 (164)
T ss_pred HHHhhCCEEEEEEECCC---HHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEC
Confidence 34678999998876554 344444444 44321 12247898888754
No 211
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=27.23 E-value=1.6e+02 Score=25.04 Aligned_cols=67 Identities=13% Similarity=-0.049 Sum_probs=35.0
Q ss_pred CCeEEEEeecCCCChHHHHHHHHHhhhhcCceeeccceeeeccCCCCCccCCCCCCCCHHHHHHHHHHHH
Q 035766 46 DKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLL 115 (128)
Q Consensus 46 ~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~ 115 (128)
-|.++.++-+-++||.--+..|+ ++..+|++..+.+....... ...|.+-..+..+.+.++++.+++
T Consensus 29 ~~~vl~Iag~D~sGgaGi~aDl~-t~~a~g~~~~~v~Talt~q~--t~~v~~v~~~~~~~i~~ql~~l~~ 95 (530)
T PRK14713 29 TPRVLSIAGTDPSGGAGIQADLK-SIAAAGGYGMAVITALVAQN--TRGVRAVHVPPADFLRAQLDAVSD 95 (530)
T ss_pred CCeEEEEeCcCCCcHHHHHHHHH-HHHHcCCeecchhheEeeec--CcceeeeccCCHHHHHHHHHHHHh
Confidence 35566666554456655555564 56788988776555544321 112321122223445566665554
No 212
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.21 E-value=35 Score=27.23 Aligned_cols=11 Identities=9% Similarity=-0.269 Sum_probs=9.9
Q ss_pred hcCeEEEEccc
Q 035766 11 EFICFHLLTDL 21 (128)
Q Consensus 11 ~AD~ii~~tPe 21 (128)
.|||+|++||-
T Consensus 184 ~~DGlIVsTPT 194 (306)
T PRK03372 184 GCDGVLVSTPT 194 (306)
T ss_pred ecCEEEEeCCC
Confidence 58999999996
No 213
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.19 E-value=34 Score=27.22 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=14.0
Q ss_pred hcCeEEEEccc----CCCCCcHH
Q 035766 11 EFICFHLLTDL----FSSFVQGP 29 (128)
Q Consensus 11 ~AD~ii~~tPe----Yn~~i~~~ 29 (128)
.|||+|++||- ||.+.=|.
T Consensus 180 ~~DGlIVsTPTGSTAYslSAGGP 202 (305)
T PRK02649 180 AADGVILSTPTGSTAYSLSAGGP 202 (305)
T ss_pred ecCeEEEeCCCcHHHHHhhCCCc
Confidence 58999999996 65554443
No 214
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=27.03 E-value=89 Score=20.90 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=24.6
Q ss_pred HHhcCeEEEEcccCCCCCcHHHHHHH---HhhcCCCCcCCCCeEEEEee
Q 035766 9 FLEFICFHLLTDLFSSFVQGPLKNAI---DWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 9 i~~AD~ii~~tPeYn~~i~~~lKn~i---D~l~~~~~~~~~Kp~~~v~~ 54 (128)
+..+|+++++-..-+ +..+.+.. +++... ..-.++|+.+++.
T Consensus 70 ~~~~~~~ilv~d~~~---~~s~~~~~~~~~~i~~~-~~~~~~piilv~n 114 (163)
T cd04136 70 IKNGQGFVLVYSITS---QSSFNDLQDLREQILRV-KDTENVPMVLVGN 114 (163)
T ss_pred hhcCCEEEEEEECCC---HHHHHHHHHHHHHHHHh-cCCCCCCEEEEEE
Confidence 568999999865433 33444444 444321 1235788888775
No 215
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=27.01 E-value=1.4e+02 Score=19.92 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=26.8
Q ss_pred eeeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 035766 83 EYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRAFTLR 123 (128)
Q Consensus 83 ~~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~~~ 123 (128)
-+++++ .-..|++|....+..+++.++.++++....++
T Consensus 12 ~v~~SG---q~g~d~~g~~~~~d~~~Q~~~~~~Nl~~~L~~ 49 (114)
T cd06152 12 RIEISG---QGGWDPDTGKIPEDLEEEIDQAFDNVELALKA 49 (114)
T ss_pred EEEEec---cCCcCCCCCccCcCHHHHHHHHHHHHHHHHHH
Confidence 456654 45677766445667888888888888877655
No 216
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=26.97 E-value=94 Score=24.97 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=24.3
Q ss_pred CCCeEEEEeec-CCCChHHHHHHHHHhhhhcC
Q 035766 45 ADKAAAIVSAA-GGSGGARAQYHLRQIGVYLD 75 (128)
Q Consensus 45 ~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~~~g 75 (128)
+.|.++|++++ | .|+.+|.+.|+.-+...+
T Consensus 4 ~~~~vlil~~~~G-~GH~~aA~al~~~~~~~~ 34 (391)
T PRK13608 4 QNKKILIITGSFG-NGHMQVTQSIVNQLNDMN 34 (391)
T ss_pred CCceEEEEECCCC-chHHHHHHHHHHHHHhhC
Confidence 46889999998 5 578888889988887654
No 217
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.97 E-value=1.4e+02 Score=22.85 Aligned_cols=17 Identities=0% Similarity=-0.402 Sum_probs=14.2
Q ss_pred HHHHHhcCeEEEEcccC
Q 035766 6 YNTFLEFICFHLLTDLF 22 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeY 22 (128)
.+.+++||.+|.+.||-
T Consensus 76 ~~~~~~aD~Vi~avpe~ 92 (288)
T PRK09260 76 KAAVADADLVIEAVPEK 92 (288)
T ss_pred HHhhcCCCEEEEeccCC
Confidence 35688999999999974
No 218
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=26.96 E-value=91 Score=21.43 Aligned_cols=44 Identities=7% Similarity=0.162 Sum_probs=27.3
Q ss_pred HHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC--CcCCCCeEEEEeec
Q 035766 9 FLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP--NVWADKAAAIVSAA 55 (128)
Q Consensus 9 i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~--~~~~~Kp~~~v~~s 55 (128)
++.+|++|++...-+ +..+.++-+|+..-. ..-.+.|+.+++.=
T Consensus 73 ~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK 118 (170)
T cd04115 73 YRNVHAVVFVYDVTN---MASFHSLPSWIEECEQHSLPNEVPRILVGNK 118 (170)
T ss_pred hcCCCEEEEEEECCC---HHHHHhHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 567899998755544 555666666653110 12356888888863
No 219
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=26.91 E-value=3.1e+02 Score=21.50 Aligned_cols=50 Identities=8% Similarity=-0.019 Sum_probs=39.6
Q ss_pred hHHHHHHHh-------cCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 3 LLTYNTFLE-------FICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 3 ~~~~~~i~~-------AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
..+.++++. .|+|++..-.-.|+=+|.---.++.+. .++.+|++..+++-
T Consensus 73 e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~---d~y~~~~~~~~~v~ 129 (328)
T cd00286 73 EEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLK---DEYPKRLKITFSIL 129 (328)
T ss_pred HHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHH---HHcCccceeEEEec
Confidence 345666776 899999999999999998888889997 47777777666654
No 220
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=26.69 E-value=42 Score=22.00 Aligned_cols=20 Identities=20% Similarity=0.057 Sum_probs=15.6
Q ss_pred HHHHHHhcCeEEEEcc--cCCC
Q 035766 5 TYNTFLEFICFHLLTD--LFSS 24 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tP--eYn~ 24 (128)
+.+.++.||++|+.|+ +|..
T Consensus 60 ~~~~~~~~D~vvl~t~h~~f~~ 81 (106)
T PF03720_consen 60 LEEALKGADAVVLATDHDEFRE 81 (106)
T ss_dssp HHHHHTTESEEEESS--GGGGC
T ss_pred HHHHhcCCCEEEEEecCHHHhc
Confidence 4688999999999995 5554
No 221
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=26.69 E-value=48 Score=28.04 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=35.5
Q ss_pred HHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeeccceeee
Q 035766 30 LKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEYFL 86 (128)
Q Consensus 30 lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i 86 (128)
+.+-++|... .+|.||.+++..+.. ....|...|+.+|+.++..|.+.+
T Consensus 237 ~~~~~~~~~~--~PL~G~~IlVtR~~~------q~~~l~~~L~~~GA~v~~~P~i~~ 285 (474)
T PRK07168 237 LRNQIAWKER--KPLHGKKVLFTSATN------KTSVMKQKLQEAGAEIYQIPTFKK 285 (474)
T ss_pred cccccchhhc--ccccCceEEeeccHH------HHHHHHHHHHHcCCEEEEeccEEe
Confidence 4566778765 689999998876542 123566778899999998887764
No 222
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=26.64 E-value=1.5e+02 Score=25.31 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=42.0
Q ss_pred HHHHHhcCeEEEEcccCCCCCcH-HHHHHHHhhcCC------------CCcCCC-CeEEEEeecCCCChHHHHHHHHHhh
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQG-PLKNAIDWASRP------------PNVWAD-KAAAIVSAAGGSGGARAQYHLRQIG 71 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~-~lKn~iD~l~~~------------~~~~~~-Kp~~~v~~sg~~gg~~a~~~L~~~l 71 (128)
.-|+..||.+++.||.=....+. ..+...|-+..+ .+.|.+ |++.-+.++|.+.+ ++..++
T Consensus 310 l~RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~k~~~Pv~SGG~~~g-----~vp~~~ 384 (468)
T PRK04208 310 LLRLIGVDHLHTGTVVGKLEGDRAEVLGYYDILREDFVPEDRSRGIFFDQDWGSIKPVFPVASGGIHPG-----HMPALL 384 (468)
T ss_pred HHHHcCCCccccCCccCCccCCHHHHHHHHHHHhhhhccccccccccccccccCCCCceEecCCCCChh-----HHHHHH
Confidence 46899999999999932233333 345666644321 035666 88888876654432 345556
Q ss_pred hhcCceee
Q 035766 72 VYLDLHFV 79 (128)
Q Consensus 72 ~~~g~~~~ 79 (128)
+.+|-.++
T Consensus 385 ~~~G~Dvi 392 (468)
T PRK04208 385 DIFGDDVV 392 (468)
T ss_pred HHhCCceE
Confidence 66674433
No 223
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=26.52 E-value=1.3e+02 Score=20.35 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=27.3
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-CcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-NVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-~~~~~Kp~~~v~~s 55 (128)
..+..+|++|++...-+ +..+.++..|+..-. ..-.++|+.+++.=
T Consensus 71 ~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK 117 (165)
T cd01868 71 AYYRGAVGALLVYDITK---KQTFENVERWLKELRDHADSNIVIMLVGNK 117 (165)
T ss_pred HHHCCCCEEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 34567898888855443 555666666664210 12236788887753
No 224
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=26.49 E-value=1.5e+02 Score=23.05 Aligned_cols=26 Identities=4% Similarity=-0.234 Sum_probs=17.6
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHH
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNA 33 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~ 33 (128)
.+.+.++|.+|+++|.+. +...++..
T Consensus 61 ~~~~~~aDvViiavp~~~--~~~v~~~l 86 (307)
T PRK07502 61 AEAVKGADLVILCVPVGA--SGAVAAEI 86 (307)
T ss_pred HHHhcCCCEEEECCCHHH--HHHHHHHH
Confidence 345788999999999853 33444433
No 225
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=26.45 E-value=72 Score=27.94 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=22.1
Q ss_pred CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCce
Q 035766 42 NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLH 77 (128)
Q Consensus 42 ~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~ 77 (128)
..+.||.+++.|++|+.|. +-.++++++ +..
T Consensus 246 ~~~~gK~vLVTGagGSiGs----el~~qil~~-~p~ 276 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGS----ELCRQILKF-NPK 276 (588)
T ss_pred hHcCCCEEEEeCCCCcHHH----HHHHHHHhc-CCC
Confidence 6789999999998876664 345666665 443
No 226
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=26.45 E-value=1.2e+02 Score=22.90 Aligned_cols=48 Identities=6% Similarity=-0.053 Sum_probs=33.7
Q ss_pred HHHHhcCeEEEEcccC----------CC---------CCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLF----------SS---------FVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeY----------n~---------~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
+++++..++|++-||= |. +=+..+++.||++... ....-..|-+.|.|
T Consensus 39 ~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~i~~lv~~v~~~-~~iD~~RVyv~G~S 105 (220)
T PF10503_consen 39 NALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAFIAALVDYVAAR-YNIDPSRVYVTGLS 105 (220)
T ss_pred HHHhhcCCeEEEcccccccCCCCCcccccccccccCccchhhHHHHHHhHhhh-cccCCCceeeEEEC
Confidence 5788999999999982 21 2355788999999752 34455666666666
No 227
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.44 E-value=33 Score=26.84 Aligned_cols=18 Identities=22% Similarity=0.086 Sum_probs=13.1
Q ss_pred hcCeEEEEccc----CCCCCcH
Q 035766 11 EFICFHLLTDL----FSSFVQG 28 (128)
Q Consensus 11 ~AD~ii~~tPe----Yn~~i~~ 28 (128)
.|||+|++||- ||.|.=|
T Consensus 157 ~~DGlIVsTPTGSTAYslSAGG 178 (271)
T PRK01185 157 KADGVIVATPTGSTSYSSSAGG 178 (271)
T ss_pred EeeEEEEeCCCchHHHHhhCCC
Confidence 58999999996 5544433
No 228
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=26.42 E-value=2.6e+02 Score=20.41 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=25.5
Q ss_pred CcCCCCeEEEEeecCCCChHHHHHHHH---HhhhhcCceee
Q 035766 42 NVWADKAAAIVSAAGGSGGARAQYHLR---QIGVYLDLHFV 79 (128)
Q Consensus 42 ~~~~~Kp~~~v~~sg~~gg~~a~~~L~---~~l~~~g~~~~ 79 (128)
..|+||+++||-++...|-....+.|. +-...-|..++
T Consensus 21 ~~~~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~~Gf~VL 61 (162)
T COG0386 21 SDYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKDKGFEVL 61 (162)
T ss_pred HHhCCcEEEEEEcccccCCcHhHHHHHHHHHHHhhCCcEEE
Confidence 569999999999986667655444444 44445555555
No 229
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.38 E-value=29 Score=27.45 Aligned_cols=19 Identities=21% Similarity=0.074 Sum_probs=14.3
Q ss_pred hcCeEEEEccc----CCCCCcHH
Q 035766 11 EFICFHLLTDL----FSSFVQGP 29 (128)
Q Consensus 11 ~AD~ii~~tPe----Yn~~i~~~ 29 (128)
.+||+|++||- ||.|-=|.
T Consensus 175 ~~DGlIVsTPTGSTAYslSAGGP 197 (292)
T PRK01911 175 WADGLIVATPTGSTGYSLSCGGP 197 (292)
T ss_pred eeceeEECCCCcHHHHHhhCCCc
Confidence 48999999997 66655443
No 230
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=26.37 E-value=41 Score=27.31 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=22.8
Q ss_pred CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 42 NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 42 ~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
+.++||.++|||++ +.|.++++ .| +.-|.+|+
T Consensus 14 ~~LkgK~iaIIGYG-sQG~ahal-NL----RDSGlnVi 45 (338)
T COG0059 14 DLLKGKKVAIIGYG-SQGHAQAL-NL----RDSGLNVI 45 (338)
T ss_pred hHhcCCeEEEEecC-hHHHHHHh-hh----hhcCCcEE
Confidence 57899999999998 45666654 34 44577766
No 231
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.19 E-value=37 Score=26.46 Aligned_cols=11 Identities=9% Similarity=-0.324 Sum_probs=9.9
Q ss_pred hcCeEEEEccc
Q 035766 11 EFICFHLLTDL 21 (128)
Q Consensus 11 ~AD~ii~~tPe 21 (128)
.+||+|++||.
T Consensus 148 ~~DGlIVsTPt 158 (264)
T PRK03501 148 RGDGMVVSTPT 158 (264)
T ss_pred ecCEEEEeCCC
Confidence 58999999996
No 232
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=26.18 E-value=1e+02 Score=23.30 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=20.2
Q ss_pred HHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHH
Q 035766 31 KNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQ 69 (128)
Q Consensus 31 Kn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~ 69 (128)
+.|+|+.-. +.=.|||+.|+|.| .|+.....-|+.
T Consensus 81 ~~AF~~yL~--~~n~GRPfILaGHS--QGs~~l~~LL~e 115 (207)
T PF11288_consen 81 RAAFDYYLA--NYNNGRPFILAGHS--QGSMHLLRLLKE 115 (207)
T ss_pred HHHHHHHHH--hcCCCCCEEEEEeC--hHHHHHHHHHHH
Confidence 344444432 34479999999998 334444444443
No 233
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=26.18 E-value=56 Score=23.50 Aligned_cols=56 Identities=7% Similarity=-0.015 Sum_probs=34.5
Q ss_pred ChhHHHHHHHhcCeEEEEcccCCCCCcH---HHHHHHHhhcCCCCcCCCCeEEEEeec-C
Q 035766 1 MWLLTYNTFLEFICFHLLTDLFSSFVQG---PLKNAIDWASRPPNVWADKAAAIVSAA-G 56 (128)
Q Consensus 1 ~~~~~~~~i~~AD~ii~~tPeYn~~i~~---~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g 56 (128)
+|..+.+.+++...+.+--|-|-.|-.+ .+++..|++...-..+..+++.++|.| |
T Consensus 17 ~w~~~~~~l~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~G 76 (242)
T PRK11126 17 DWQPVGEALPDYPRLYIDLPGHGGSAAISVDGFADVSRLLSQTLQSYNILPYWLVGYSLG 76 (242)
T ss_pred HHHHHHHHcCCCCEEEecCCCCCCCCCccccCHHHHHHHHHHHHHHcCCCCeEEEEECHH
Confidence 4778888886666666666666544221 445555555321134567899999999 5
No 234
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=26.12 E-value=1.1e+02 Score=20.55 Aligned_cols=45 Identities=4% Similarity=-0.075 Sum_probs=26.8
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCC--CCcCCCCeEEEEeec
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRP--PNVWADKAAAIVSAA 55 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~--~~~~~~Kp~~~v~~s 55 (128)
.+..+|++|++...-+. ..+.....|+... .....++|+.++..=
T Consensus 64 ~~~~~~~iv~v~D~~~~---~~~~~~~~~~~~~~~~~~~~~~piilv~nK 110 (160)
T cd04156 64 YLENTDGLVYVVDSSDE---ARLDESQKELKHILKNEHIKGVPVVLLANK 110 (160)
T ss_pred HhccCCEEEEEEECCcH---HHHHHHHHHHHHHHhchhhcCCCEEEEEEC
Confidence 36789999998765553 2344444333210 023468888888864
No 235
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=26.08 E-value=93 Score=21.22 Aligned_cols=46 Identities=13% Similarity=0.358 Sum_probs=30.0
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-CcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-NVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-~~~~~Kp~~~v~~s 55 (128)
..++.+|+++++ |+-+-+..+.++-+|+..-. ....++|+.+++.=
T Consensus 69 ~~~~~~~~~l~v---~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 115 (165)
T cd01865 69 AYYRGAMGFILM---YDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNK 115 (165)
T ss_pred HHccCCcEEEEE---EECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEEC
Confidence 346789999998 44445677888888875311 12246788888763
No 236
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=25.94 E-value=1.4e+02 Score=20.54 Aligned_cols=46 Identities=13% Similarity=0.002 Sum_probs=26.8
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCC--CCcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRP--PNVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~--~~~~~~Kp~~~v~~s 55 (128)
+.+..+|++|++...-+ +..+.+...|+... .....++|+.+++.=
T Consensus 77 ~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK 124 (173)
T cd04154 77 NYFESTDALIWVVDSSD---RLRLDDCKRELKELLQEERLAGATLLILANK 124 (173)
T ss_pred HHhCCCCEEEEEEECCC---HHHHHHHHHHHHHHHhChhhcCCCEEEEEEC
Confidence 34678999999865443 33444444444210 023467888888753
No 237
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=25.90 E-value=1.2e+02 Score=21.28 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=28.5
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCC-cCCCCeEEEEee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPN-VWADKAAAIVSA 54 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~-~~~~Kp~~~v~~ 54 (128)
..+..||++|++-..-+ +..+.++.+|+..-.. .-.++|+.+++.
T Consensus 68 ~~~~~~d~iilv~d~~~---~~s~~~i~~~~~~i~~~~~~~~~~ivv~n 113 (188)
T cd04125 68 SYYRGAHGYLLVYDVTD---QESFENLKFWINEINRYARENVIKVIVAN 113 (188)
T ss_pred HHccCCCEEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 35678999999966555 5677777777642111 113467766664
No 238
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=25.85 E-value=64 Score=20.09 Aligned_cols=19 Identities=11% Similarity=-0.183 Sum_probs=13.2
Q ss_pred HHHHHHhcCeEEEEcccCC
Q 035766 5 TYNTFLEFICFHLLTDLFS 23 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn 23 (128)
..+.+++||.+|+++|=+.
T Consensus 55 ~~~~~~~advvilav~p~~ 73 (96)
T PF03807_consen 55 NEEAAQEADVVILAVKPQQ 73 (96)
T ss_dssp HHHHHHHTSEEEE-S-GGG
T ss_pred hHHhhccCCEEEEEECHHH
Confidence 4567788999999998553
No 239
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.77 E-value=1.2e+02 Score=26.10 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 28 GPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 28 ~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
..+..+.+.|.. ..||+.++|.+-...+..+.+.|+.+...+|+.++
T Consensus 200 ~~l~~a~~~L~~-----A~rPvil~G~g~~~~~~~a~~~l~~lae~lg~pv~ 246 (595)
T PRK09107 200 EAITEAVELLAN-----AKRPVIYSGGGVINSGPEASRLLRELVELTGFPIT 246 (595)
T ss_pred HHHHHHHHHHHh-----CCCcEEEECCcccccchhHHHHHHHHHHHHCCCEE
Confidence 468888888864 37899999876222233467788888888898776
No 240
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=25.76 E-value=1.1e+02 Score=20.66 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=29.9
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCC-cCCCCeEEEEee
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPN-VWADKAAAIVSA 54 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~-~~~~Kp~~~v~~ 54 (128)
...+..||++|++-.--+ +..+.++.+|+..-.. .-.++|+.+++.
T Consensus 69 ~~~~~~~~~ii~v~d~~~---~~s~~~l~~~~~~~~~~~~~~~~~iiv~n 115 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTD---QESFNNVKQWLQEIDRYASENVNKLLVGN 115 (166)
T ss_pred HHHhCcCCEEEEEEECcC---HHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence 345678999999966544 5578888777752111 114678887775
No 241
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=25.67 E-value=1.2e+02 Score=21.92 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=35.4
Q ss_pred HHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHH--HHHHHHHhhhhcCceee
Q 035766 9 FLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGAR--AQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 9 i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~--a~~~L~~~l~~~g~~~~ 79 (128)
++.||++|++-..-+ +..+.++-.|+..-.....+-|+.|+|.=-.-...+ ..+..+......++..+
T Consensus 76 ~~~ad~illVfD~t~---~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~ 145 (189)
T cd04121 76 SRGAQGIILVYDITN---RWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFF 145 (189)
T ss_pred hcCCCEEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEE
Confidence 479999999876665 444555444443211123567788877531111111 13345555555555433
No 242
>PLN00223 ADP-ribosylation factor; Provisional
Probab=25.62 E-value=1.5e+02 Score=20.86 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=29.0
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCC--CCcCCCCeEEEEeec
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRP--PNVWADKAAAIVSAA 55 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~--~~~~~~Kp~~~v~~s 55 (128)
-++.||++|++...-+ +..+.++.+++.+- ...+.++|+.+++.=
T Consensus 81 ~~~~a~~iI~V~D~s~---~~s~~~~~~~l~~~l~~~~~~~~piilv~NK 127 (181)
T PLN00223 81 YFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
T ss_pred HhccCCEEEEEEeCCc---HHHHHHHHHHHHHHhcCHhhCCCCEEEEEEC
Confidence 3678999999866443 45566666555421 024567899998853
No 243
>PLN02577 hydroxymethylglutaryl-CoA synthase
Probab=25.51 E-value=64 Score=27.27 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=28.3
Q ss_pred ccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CC
Q 035766 20 DLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GG 57 (128)
Q Consensus 20 PeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~ 57 (128)
-.|.+|+...|-.+||.-. ..+.||.+++.|++ |-
T Consensus 326 N~YTaSlyl~L~SlL~~~~---~~~~G~rIg~fSYGSG~ 361 (459)
T PLN02577 326 NMYTASLYAALASLVHNKH---SELAGKRILMFSYGSGL 361 (459)
T ss_pred cccchHHHHHHHHHHhhcc---ccCCCCEEEEEeecCCc
Confidence 3588889999999997653 35699999999998 53
No 244
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=25.42 E-value=3.1e+02 Score=20.98 Aligned_cols=66 Identities=6% Similarity=-0.070 Sum_probs=34.4
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHH---HhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeeccc
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAI---DWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKP 82 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~i---D~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~ 82 (128)
.+.++++|.+|++.|-. ..++..+ +-+.. ..-.++.+ +..|+. .......+...+..-|...+..|
T Consensus 47 ~~~~~~advVil~vp~~-----~~~~~v~~g~~~l~~--~~~~g~~v--id~st~--~p~~~~~~~~~~~~~g~~~vdaP 115 (288)
T TIGR01692 47 AEAAEGADRVITMLPAG-----QHVISVYSGDEGILP--KVAKGSLL--IDCSTI--DPDSARKLAELAAAHGAVFMDAP 115 (288)
T ss_pred HHHHhcCCEEEEeCCCh-----HHHHHHHcCcchHhh--cCCCCCEE--EECCCC--CHHHHHHHHHHHHHcCCcEEECC
Confidence 45678899999999963 2455554 33321 12234433 333321 12223345555555677666544
No 245
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.41 E-value=40 Score=26.00 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=14.7
Q ss_pred hcCeEEEEccc----CCCCCcHH
Q 035766 11 EFICFHLLTDL----FSSFVQGP 29 (128)
Q Consensus 11 ~AD~ii~~tPe----Yn~~i~~~ 29 (128)
.+||+|++||. ||.+.=|.
T Consensus 145 ~~DG~ivsTptGSTaY~lSaGGp 167 (256)
T PRK14075 145 FADGVVISTPTGSTAYSLSLGGP 167 (256)
T ss_pred ecCEEEEeCCCchHHHHhhCCCc
Confidence 58999999997 76665443
No 246
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.36 E-value=39 Score=26.35 Aligned_cols=11 Identities=9% Similarity=-0.290 Sum_probs=10.0
Q ss_pred hcCeEEEEccc
Q 035766 11 EFICFHLLTDL 21 (128)
Q Consensus 11 ~AD~ii~~tPe 21 (128)
.+||+|++||-
T Consensus 147 ~gDGlIVsTpt 157 (265)
T PRK04885 147 RGDGLCVSTPT 157 (265)
T ss_pred EcCEEEEECCC
Confidence 58999999996
No 247
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.36 E-value=39 Score=26.33 Aligned_cols=11 Identities=0% Similarity=-0.348 Sum_probs=9.9
Q ss_pred hcCeEEEEccc
Q 035766 11 EFICFHLLTDL 21 (128)
Q Consensus 11 ~AD~ii~~tPe 21 (128)
.+||+|++||.
T Consensus 136 ~gDGlIVsTPt 146 (259)
T PRK00561 136 RGSGLLIGPRT 146 (259)
T ss_pred ecCEEEEeCch
Confidence 58999999996
No 248
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=25.26 E-value=3e+02 Score=20.76 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=30.1
Q ss_pred ChhHHHHHHHhc--CeEEEEcccCCCC---------CcHHHHHHHHhhcCCCCcC-CCCeEEEEeec-C
Q 035766 1 MWLLTYNTFLEF--ICFHLLTDLFSSF---------VQGPLKNAIDWASRPPNVW-ADKAAAIVSAA-G 56 (128)
Q Consensus 1 ~~~~~~~~i~~A--D~ii~~tPeYn~~---------i~~~lKn~iD~l~~~~~~~-~~Kp~~~v~~s-g 56 (128)
+|..+.+.+++. ..+.+--|-|..+ +....+..++.+. .+ .++++.++|.| |
T Consensus 33 ~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~~l~~~i~----~l~~~~~v~lvGhS~G 97 (273)
T PLN02211 33 CWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLS----SLPENEKVILVGHSAG 97 (273)
T ss_pred cHHHHHHHHHhCCCEEEEecccCCCCCCCCcccCCCHHHHHHHHHHHHH----hcCCCCCEEEEEECch
Confidence 477777777653 5555555554422 2233444555553 23 35899999998 5
No 249
>PRK13783 adenylosuccinate synthetase; Provisional
Probab=25.24 E-value=97 Score=25.90 Aligned_cols=44 Identities=11% Similarity=0.014 Sum_probs=34.1
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
.+.++.-+----|.|+-.+|...|++|.++ .++-|-|+.++|++
T Consensus 352 ~l~~~~Pvye~~~GW~~~~p~~a~~yi~~i----E~~~g~pv~~is~G 395 (404)
T PRK13783 352 DLEKAEPVYEEFDGWKSLEDKNFLKFVDFI----ERETGRKIAYISTG 395 (404)
T ss_pred hhhcceEEEEecCCCCCCcHHHHHHHHHHH----HHHHCCCEEEEEcC
Confidence 345555555566788888888888888888 47888999999987
No 250
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=25.16 E-value=58 Score=22.29 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=26.3
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHH-hhcCCCCcCCCCeEEEEeec
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAID-WASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD-~l~~~~~~~~~Kp~~~v~~s 55 (128)
.+..+|++|++-..-+ +..+.+..+ |+..-.....++|+.+++.=
T Consensus 66 ~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK 111 (174)
T smart00174 66 SYPDTDVFLICFSVDS---PASFENVKEKWYPEVKHFCPNTPIILVGTK 111 (174)
T ss_pred hcCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 3568999999855443 445555543 44321123357898888753
No 251
>KOG4011 consensus Transcription initiation factor TFIID, subunit TAF7 [Transcription]
Probab=25.11 E-value=33 Score=27.68 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=14.0
Q ss_pred cCCCCCcHHHHHHHHhh
Q 035766 21 LFSSFVQGPLKNAIDWA 37 (128)
Q Consensus 21 eYn~~i~~~lKn~iD~l 37 (128)
.|.+||+|.|||+=-+-
T Consensus 133 ~y~HGiTPPmKnvRkRR 149 (330)
T KOG4011|consen 133 IYPHGITPPMKNVRKRR 149 (330)
T ss_pred ecccCCCcchhHHHHHH
Confidence 59999999999995443
No 252
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=25.10 E-value=2.8e+02 Score=22.25 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=33.0
Q ss_pred CCCChHHHHHHHHHhhhhcCceeeccceeeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHH
Q 035766 56 GGSGGARAQYHLRQIGVYLDLHFVNKPEYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLAL 117 (128)
Q Consensus 56 g~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l 117 (128)
|..|.-.--.++++.|...|..++ .+-.|++...+.. ++..-.+++-...++.+++++
T Consensus 43 GsPGSH~DFkYi~~~l~~~~iR~I---~iN~PGf~~t~~~-~~~~~~n~er~~~~~~ll~~l 100 (297)
T PF06342_consen 43 GSPGSHNDFKYIRPPLDEAGIRFI---GINYPGFGFTPGY-PDQQYTNEERQNFVNALLDEL 100 (297)
T ss_pred CCCCCccchhhhhhHHHHcCeEEE---EeCCCCCCCCCCC-cccccChHHHHHHHHHHHHHc
Confidence 544544446789999999999988 3434443111221 223334556566666666554
No 253
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=25.10 E-value=1.4e+02 Score=20.35 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=29.7
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-CcCCCCeEEEEee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-NVWADKAAAIVSA 54 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-~~~~~Kp~~~v~~ 54 (128)
..++.||++|++...-+ +..+.++.+|+..-. ..-.+.|+.+++.
T Consensus 71 ~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~n 116 (167)
T cd01867 71 AYYRGAMGIILVYDITD---EKSFENIRNWMRNIEEHASEDVERMLVGN 116 (167)
T ss_pred HHhCCCCEEEEEEECcC---HHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence 45678999999977533 566777777774210 1124678888875
No 254
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=25.08 E-value=3.9e+02 Score=22.23 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=36.3
Q ss_pred cCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CCCC--hHHHHHHHHHhhhhcCceee
Q 035766 12 FICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GGSG--GARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 12 AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~g--g~~a~~~L~~~l~~~g~~~~ 79 (128)
-|..|+++| +.....+++-+.. ..=|.+.+++.+ +..| |...++.|....+..|+.++
T Consensus 65 ~Dlavi~vp------~~~~~~~l~e~~~----~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 65 VDLAVIVVP------AKYVPQVVEECGE----KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred CCEEEEecC------HHHHHHHHHHHHh----cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 488888888 4555555555542 223555555544 3333 34445788888888899988
No 255
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=24.99 E-value=3.1e+02 Score=20.77 Aligned_cols=25 Identities=4% Similarity=-0.270 Sum_probs=16.8
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhh
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWA 37 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l 37 (128)
+.+.++|.+|+++|- ..++.++.-+
T Consensus 53 ~~~~~~D~Vilavkp------~~~~~vl~~i 77 (260)
T PTZ00431 53 ELAKTCDIIVLAVKP------DLAGKVLLEI 77 (260)
T ss_pred HHHHhCCEEEEEeCH------HHHHHHHHHH
Confidence 346789999999874 4455555544
No 256
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=24.81 E-value=1.2e+02 Score=22.01 Aligned_cols=45 Identities=11% Similarity=0.049 Sum_probs=27.3
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHH---HHHhhcCCC-CcCCCCeEEEEee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKN---AIDWASRPP-NVWADKAAAIVSA 54 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn---~iD~l~~~~-~~~~~Kp~~~v~~ 54 (128)
..+..||++|++-...+ +..+.+ +++++.... ..-.++|+.+++.
T Consensus 76 ~~~~~ad~iilv~D~~~---~~S~~~~~~~~~~i~~~~~~~~~~~piiivgN 124 (198)
T cd04142 76 RGLRNSRAFILVYDICS---PDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124 (198)
T ss_pred hhhccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 45789999999966654 444444 444443200 0135688888886
No 257
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=24.74 E-value=1.3e+02 Score=22.37 Aligned_cols=36 Identities=11% Similarity=-0.049 Sum_probs=21.5
Q ss_pred HhhhhcCceeeccceeeeccCCCCCccCCCCCCCCHHH
Q 035766 69 QIGVYLDLHFVNKPEYFLNAFQPPAKFDSDGNLIDEES 106 (128)
Q Consensus 69 ~~l~~~g~~~~~~~~~~i~~~~~~~~fd~~g~l~~~~~ 106 (128)
+++..+|+++.+.|....... ...+.+.+...+++.
T Consensus 21 ~~~~~~g~~~~~~~T~~~~~~--~~~~~~~~~~~~~~~ 56 (254)
T cd01173 21 FPLQRLGWDVDALPTVQFSNH--TGYGTWTGFVLSAEE 56 (254)
T ss_pred HHHHHcCCccceeCceecCCC--CCCCCCCCeecCHHH
Confidence 467888998887777655431 223324555555544
No 258
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=24.73 E-value=1.7e+02 Score=22.58 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=27.8
Q ss_pred hhHHHHHHHhcCeEEEEcccCC-CCCc-------------HHHHHHHHhhcCCCCcCCCCeEEEEeec-C
Q 035766 2 WLLTYNTFLEFICFHLLTDLFS-SFVQ-------------GPLKNAIDWASRPPNVWADKAAAIVSAA-G 56 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPeYn-~~i~-------------~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g 56 (128)
|..+.+++.++ ++-+..|.|- ++-| ..++.++||+.. ...+++.++|.| |
T Consensus 45 ~~~la~~La~~-Gy~Vl~~Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~----~~~~~v~LvG~SmG 109 (266)
T TIGR03101 45 VALQARAFAAG-GFGVLQIDLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIE----QGHPPVTLWGLRLG 109 (266)
T ss_pred HHHHHHHHHHC-CCEEEEECCCCCCCCCCccccCCHHHHHHHHHHHHHHHHh----cCCCCEEEEEECHH
Confidence 55566677654 4444444443 2222 224456667742 245789999998 5
No 259
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.72 E-value=40 Score=26.70 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=14.7
Q ss_pred hcCeEEEEccc----CCCCCcHH
Q 035766 11 EFICFHLLTDL----FSSFVQGP 29 (128)
Q Consensus 11 ~AD~ii~~tPe----Yn~~i~~~ 29 (128)
.+||+|++||. ||.+.=|.
T Consensus 178 ~gDGlIVsTPtGSTAYslSAGGP 200 (305)
T PRK02645 178 QGDGLIVSTPTGSTAYTMAAGGP 200 (305)
T ss_pred ecCEEEEecCCChhhhhhhcCCc
Confidence 58999999997 66655553
No 260
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=24.71 E-value=1e+02 Score=21.74 Aligned_cols=43 Identities=7% Similarity=-0.106 Sum_probs=24.7
Q ss_pred HHhcCeEEEEcccCCCCCcHHHHHHHHhhc---CCCCcCCCCeEEEEeec
Q 035766 9 FLEFICFHLLTDLFSSFVQGPLKNAIDWAS---RPPNVWADKAAAIVSAA 55 (128)
Q Consensus 9 i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~---~~~~~~~~Kp~~~v~~s 55 (128)
+..||++|++...=+ +..+.++..|+. .. ....++|+.+++.=
T Consensus 73 ~~~~d~ii~v~D~~~---~~~~~~~~~~~~~i~~~-~~~~~~p~iiv~NK 118 (183)
T cd04152 73 TRCTDGIVFVVDSVD---VERMEEAKTELHKITRF-SENQGVPVLVLANK 118 (183)
T ss_pred hccCCEEEEEEECCC---HHHHHHHHHHHHHHHhh-hhcCCCcEEEEEEC
Confidence 567999999876333 333333333332 11 13357899888754
No 261
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=24.66 E-value=1.4e+02 Score=20.51 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=28.8
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC--CcCCCCeEEEEee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP--NVWADKAAAIVSA 54 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~--~~~~~Kp~~~v~~ 54 (128)
..+..+|++|++....+ +..+.++-+|+..-. ....+.|+.+++.
T Consensus 82 ~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 128 (180)
T cd04127 82 AFFRDAMGFLLIFDLTN---EQSFLNVRNWMSQLQTHAYCENPDIVLCGN 128 (180)
T ss_pred HHhCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 34678999999987665 566666666664210 1224667877764
No 262
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=24.60 E-value=2.1e+02 Score=20.60 Aligned_cols=46 Identities=13% Similarity=-0.065 Sum_probs=27.8
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
++..+..+|+++++..--.+.........+.++. ....+|+.++..
T Consensus 100 ~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~----~~~~~~iiivvN 145 (203)
T cd01888 100 MLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE----IMGLKHIIIVQN 145 (203)
T ss_pred HHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH----HcCCCcEEEEEE
Confidence 4555677799998888776555555555666553 233356554443
No 263
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=24.55 E-value=1e+02 Score=24.89 Aligned_cols=33 Identities=3% Similarity=-0.205 Sum_probs=27.4
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcC
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASR 39 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~ 39 (128)
.+..+.||.+|+-||.= +.-+...|+++|++..
T Consensus 136 ~EAvk~aei~I~ftPfG-~~t~~Iikki~~~ipE 168 (342)
T PRK00961 136 REAVADADIVITWLPKG-GMQPDIIEKFADDIKE 168 (342)
T ss_pred HHHhcCCCEEEEecCCC-CCchHHHHHHHhhCCC
Confidence 46789999999999963 3458999999999963
No 264
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=24.51 E-value=1.6e+02 Score=19.43 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=29.0
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcC--CCCeEEEEeec
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVW--ADKAAAIVSAA 55 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~--~~Kp~~~v~~s 55 (128)
....++.+|++|++...-+ +..+.++.+|...-.... .++|+.+++.=
T Consensus 64 ~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 113 (160)
T cd00876 64 RDLYIRQGDGFILVYSITD---RESFEEIKGYREQILRVKDDEDIPIVLVGNK 113 (160)
T ss_pred HHHHHhcCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEC
Confidence 3455778999999876554 445555555543110112 47888888764
No 265
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=24.47 E-value=82 Score=21.75 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=21.2
Q ss_pred HHhcCeEEEEcccCCCCCcHHHHHHH-HhhcCCCCcCCCCeEEEEee
Q 035766 9 FLEFICFHLLTDLFSSFVQGPLKNAI-DWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 9 i~~AD~ii~~tPeYn~~i~~~lKn~i-D~l~~~~~~~~~Kp~~~v~~ 54 (128)
++.||++|++-...+. ..+++.. .|+..-.....++|+.+++.
T Consensus 69 ~~~a~~~i~v~d~~~~---~sf~~~~~~~~~~~~~~~~~~piilv~n 112 (173)
T cd04130 69 YPDTDVFLLCFSVVNP---SSFQNISEKWIPEIRKHNPKAPIILVGT 112 (173)
T ss_pred cCCCcEEEEEEECCCH---HHHHHHHHHHHHHHHhhCCCCCEEEEee
Confidence 3577888887655442 3344432 23321001234577766664
No 266
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.43 E-value=41 Score=26.31 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=14.2
Q ss_pred hcCeEEEEccc----CCCCCcHH
Q 035766 11 EFICFHLLTDL----FSSFVQGP 29 (128)
Q Consensus 11 ~AD~ii~~tPe----Yn~~i~~~ 29 (128)
.+||+|++||. ||.+.=|.
T Consensus 164 ~gDGvIvsTptGSTAY~lSaGGp 186 (277)
T PRK03708 164 RADGLIISTPTGSTAYAMSAGGP 186 (277)
T ss_pred ecCEEEEeCCCchHHHHhhCCCc
Confidence 58999999996 66555443
No 267
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=24.34 E-value=3.3e+02 Score=20.81 Aligned_cols=24 Identities=0% Similarity=-0.153 Sum_probs=18.4
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHH
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAI 34 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~i 34 (128)
.+.++++|.+|++.|. +..+|..+
T Consensus 50 ~~~~~~aDivi~~vp~-----~~~~~~v~ 73 (291)
T TIGR01505 50 RQVTEQADVIFTMVPD-----SPQVEEVA 73 (291)
T ss_pred HHHHhcCCEEEEecCC-----HHHHHHHH
Confidence 4667899999999996 45666664
No 268
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=24.33 E-value=1.3e+02 Score=20.16 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=25.6
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC--CcCCCCeEEEEee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP--NVWADKAAAIVSA 54 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~--~~~~~Kp~~~v~~ 54 (128)
..++.+|++|++....+ +..+.++-+|+.... ..-.++|+.+++.
T Consensus 68 ~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~iv~n 114 (161)
T cd01863 68 SYYRGAQGVILVYDVTR---RDTFTNLETWLNELETYSTNNDIVKMLVGN 114 (161)
T ss_pred HHhCCCCEEEEEEECCC---HHHHHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 44568999999866543 334444444442110 1235677777775
No 269
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=24.21 E-value=29 Score=25.69 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=21.2
Q ss_pred EEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 16 HLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 16 i~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
|.--|+||||- -|++-|. ...|||++++-+.
T Consensus 145 v~dNPMY~GST----l~fLg~A-----l~~gkpaGLllt~ 175 (208)
T KOG4142|consen 145 VLDNPMYWGST----LNFLGWA-----LMHGKPAGLLLTV 175 (208)
T ss_pred ccCCcccccch----HHHHHHH-----HHcCCcchhHHHH
Confidence 45568888764 4666666 5678888877644
No 270
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.07 E-value=44 Score=26.21 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=14.8
Q ss_pred hcCeEEEEccc----CCCCCcHH
Q 035766 11 EFICFHLLTDL----FSSFVQGP 29 (128)
Q Consensus 11 ~AD~ii~~tPe----Yn~~i~~~ 29 (128)
.+||+|++||. ||.+.=|.
T Consensus 155 ~~DGlIVsTPtGSTAY~lSAGGP 177 (272)
T PRK02231 155 RSDGLIISTPTGSTAYSLSAGGP 177 (272)
T ss_pred ecCeEEEECCCcHHHHHhhCCCc
Confidence 58999999997 76665553
No 271
>PTZ00344 pyridoxal kinase; Provisional
Probab=23.98 E-value=3.2e+02 Score=21.08 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=30.7
Q ss_pred CeEEEEeec---CCCChHHHHHHHHHhhhhcCceeeccceeeeccCCCCCccC-CCCCCCCH-HHHHHHHH
Q 035766 47 KAAAIVSAA---GGSGGARAQYHLRQIGVYLDLHFVNKPEYFLNAFQPPAKFD-SDGNLIDE-ESKEKLKA 112 (128)
Q Consensus 47 Kp~~~v~~s---g~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i~~~~~~~~fd-~~g~l~~~-~~~~~l~~ 112 (128)
|.++++... |..|+..+. .+++.+|+.+.+.|.+.+++ +..++ ..|...++ +..+.++.
T Consensus 5 ~~vl~i~~~~~~G~~G~~~~~----~~l~~~g~~~~~~~tv~ls~---~~~~~~~~g~~i~~~~~~~~l~~ 68 (296)
T PTZ00344 5 KKVLSIQSHVTHGYVGNRAAT----FPLQLLGFDVDFVNTVQLSN---HTGYPVIKGHRLDLNELITLMDG 68 (296)
T ss_pred CeEEEEcceeecccccchhHH----HHHHHcCCcceeeccEecCC---CCCCCCccCeeCCHHHHHHHHHH
Confidence 455555543 333333322 55667788877667766654 23333 45666665 33344433
No 272
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.95 E-value=43 Score=26.52 Aligned_cols=18 Identities=17% Similarity=0.010 Sum_probs=14.0
Q ss_pred hcCeEEEEccc----CCCCCcH
Q 035766 11 EFICFHLLTDL----FSSFVQG 28 (128)
Q Consensus 11 ~AD~ii~~tPe----Yn~~i~~ 28 (128)
.+||+|++||. ||.|.=|
T Consensus 180 ~~DGlIVsTPTGSTAYslSAGG 201 (296)
T PRK04539 180 RSDGLIVSTPTGSTAYSLAAGG 201 (296)
T ss_pred ecCeEEEECCCcHHHHHhhCCC
Confidence 58999999997 6655544
No 273
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=23.83 E-value=1.7e+02 Score=19.32 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=28.8
Q ss_pred cHHHHHHHHhhcCCCCcCCCCeEEEEeec--CCCChHHHHHHHHHhhh
Q 035766 27 QGPLKNAIDWASRPPNVWADKAAAIVSAA--GGSGGARAQYHLRQIGV 72 (128)
Q Consensus 27 ~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s--g~~gg~~a~~~L~~~l~ 72 (128)
+|+++..++-+.. ...++||.++..- |...|...+.+....++
T Consensus 57 ~Pqi~~~~~~i~~---~~~~~pV~~I~~~~Yg~~dg~~vl~~a~~~~~ 101 (106)
T PRK10499 57 GPQIAYMLPEIQR---LLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIK 101 (106)
T ss_pred CHHHHHHHHHHHh---hcCCCCEEEEChHhhhcCCHHHHHHHHHHHHH
Confidence 5678888887753 4445889888876 66667666655544444
No 274
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=23.67 E-value=1.3e+02 Score=25.87 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=40.0
Q ss_pred EEcccCCCCCcH--HHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeec
Q 035766 17 LLTDLFSSFVQG--PLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVN 80 (128)
Q Consensus 17 ~~tPeYn~~i~~--~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~ 80 (128)
...|-|....++ .++.+.+.|.. ..||+.++|.+.. ...+.+.|+.+...+++.++.
T Consensus 175 ~~~~~~~p~~~~~~~i~~aa~~L~~-----AkrPvIl~G~G~~--~a~a~~~l~~lae~~~~Pv~~ 233 (550)
T COG0028 175 AILPPYRPAPPPPEAIRKAAELLAE-----AKRPVILAGGGVR--RAGASEELRELAEKLGAPVVT 233 (550)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHh-----CCCCEEEECCCcc--ccccHHHHHHHHHHHCCCEEE
Confidence 345666666654 68888888865 3489999986622 233667888888888887773
No 275
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=23.56 E-value=4.2e+02 Score=21.82 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=28.0
Q ss_pred HHHHHHhcCeEEEEcccCCC--------CCcHHHHHHHHhhcC---CCCcCCCCeEEEEee
Q 035766 5 TYNTFLEFICFHLLTDLFSS--------FVQGPLKNAIDWASR---PPNVWADKAAAIVSA 54 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~--------~i~~~lKn~iD~l~~---~~~~~~~Kp~~~v~~ 54 (128)
=.+++++. |++++-|+-.. +=++..-..++++.+ +.+.+.||.+.+.+.
T Consensus 134 Nl~~L~~~-G~~vv~P~~g~~ac~~~g~g~~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g 193 (390)
T TIGR00521 134 NIKRLKDD-GYIFIEPDSGLLACGDEGKGRLAEPETIVKAAEREFSPKEDLEGKRVLITAG 193 (390)
T ss_pred HHHHHHHC-CcEEECCCCcccccccccCCCCCCHHHHHHHHHHHHhhccccCCceEEEecC
Confidence 34556655 99999998221 112333344454432 113589999887664
No 276
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=23.37 E-value=65 Score=27.35 Aligned_cols=44 Identities=9% Similarity=0.256 Sum_probs=31.9
Q ss_pred HhcCeEEEEcccCCCC-------------CcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 10 LEFICFHLLTDLFSSF-------------VQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 10 ~~AD~ii~~tPeYn~~-------------i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
..+.++.++.+.+-|. ...-+..+|||+.. +.|.+.+++++|.|
T Consensus 49 l~~~Gy~vv~~D~RG~g~S~g~~~~~~~~~~~D~~~~i~~l~~--q~~~~~~v~~~G~S 105 (550)
T TIGR00976 49 FVAQGYAVVIQDTRGRGASEGEFDLLGSDEAADGYDLVDWIAK--QPWCDGNVGMLGVS 105 (550)
T ss_pred HHhCCcEEEEEeccccccCCCceEecCcccchHHHHHHHHHHh--CCCCCCcEEEEEeC
Confidence 3456777777766542 33456899999976 56777899999998
No 277
>PLN02645 phosphoglycolate phosphatase
Probab=23.34 E-value=1.9e+02 Score=22.58 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=25.8
Q ss_pred hcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecC
Q 035766 11 EFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAG 56 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg 56 (128)
+.||+++-. +.-+|+. +.+|+++.. .||++.+++-.+
T Consensus 34 D~DGtl~~~---~~~~~ga-~e~l~~lr~-----~g~~~~~~TN~~ 70 (311)
T PLN02645 34 DCDGVIWKG---DKLIEGV-PETLDMLRS-----MGKKLVFVTNNS 70 (311)
T ss_pred eCcCCeEeC---CccCcCH-HHHHHHHHH-----CCCEEEEEeCCC
Confidence 456666653 3456666 899999854 589999998653
No 278
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=23.29 E-value=31 Score=29.53 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=25.3
Q ss_pred hcCeEEEEcccCCCCC-cH-HHHHHHHhhc---------CCCCcCCCCeEEEEeec
Q 035766 11 EFICFHLLTDLFSSFV-QG-PLKNAIDWAS---------RPPNVWADKAAAIVSAA 55 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~i-~~-~lKn~iD~l~---------~~~~~~~~Kp~~~v~~s 55 (128)
..|++|++|-.|+--. |- .++. +|-.. +....|+||.|+|||.+
T Consensus 138 ~fD~VvvatG~~~~P~~P~~~~~G-~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g 192 (531)
T PF00743_consen 138 EFDAVVVATGHFSKPNIPEPSFPG-LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGG 192 (531)
T ss_dssp EECEEEEEE-SSSCESB-----CT-GGGHCSEEEEGGG--TGGGGTTSEEEEESSS
T ss_pred EeCeEEEcCCCcCCCCCChhhhhh-hhcCCeeEEccccCcChhhcCCCEEEEEeCC
Confidence 4699999999887432 31 1111 12211 11167999999999966
No 279
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=23.27 E-value=1.5e+02 Score=21.75 Aligned_cols=15 Identities=0% Similarity=-0.292 Sum_probs=11.9
Q ss_pred HHHHHHhcCeEEEEc
Q 035766 5 TYNTFLEFICFHLLT 19 (128)
Q Consensus 5 ~~~~i~~AD~ii~~t 19 (128)
-.+.+++||.++...
T Consensus 18 a~~~l~~advV~~~~ 32 (229)
T TIGR01465 18 GRKLLESADVILYAG 32 (229)
T ss_pred HHHHHHhCCEEEEeC
Confidence 468899999998644
No 280
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=23.25 E-value=63 Score=21.77 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=39.8
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcC-CCCeEEEEeec-CCCC-hHHHHHHHHHhhhhcCc
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVW-ADKAAAIVSAA-GGSG-GARAQYHLRQIGVYLDL 76 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~-~~Kp~~~v~~s-g~~g-g~~a~~~L~~~l~~~g~ 76 (128)
..+.++|++|++-.. +=+..++++-+|+..-.... .+.|+.+++.- .... ..-..+..+......+.
T Consensus 67 ~~~~~~~~~ii~fd~---~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~ 136 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDV---TDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGV 136 (162)
T ss_dssp HHHTTESEEEEEEET---TBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTS
T ss_pred ccccccccccccccc---cccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCC
Confidence 457789999999544 44778888888886321122 35788888764 2111 01112345556666663
No 281
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=23.17 E-value=43 Score=26.38 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=15.0
Q ss_pred hcCeEEEEccc----CCCCCcHHH
Q 035766 11 EFICFHLLTDL----FSSFVQGPL 30 (128)
Q Consensus 11 ~AD~ii~~tPe----Yn~~i~~~l 30 (128)
.+||+|++||. ||.+.=|.+
T Consensus 175 ~gDGlIVsTPtGSTAYslSaGGPI 198 (291)
T PRK02155 175 RSDGLIVATPTGSTAYALSAGGPI 198 (291)
T ss_pred ecCeEEEECCCchhhhhhhcCCcc
Confidence 58999999996 666655543
No 282
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.05 E-value=43 Score=26.44 Aligned_cols=18 Identities=11% Similarity=-0.082 Sum_probs=13.8
Q ss_pred hcCeEEEEccc----CCCCCcH
Q 035766 11 EFICFHLLTDL----FSSFVQG 28 (128)
Q Consensus 11 ~AD~ii~~tPe----Yn~~i~~ 28 (128)
.+||+|++||- ||.+.=|
T Consensus 174 ~~DGlivsTptGSTAY~lSAGG 195 (295)
T PRK01231 174 RSDGLIVSTPTGSTAYALSGGG 195 (295)
T ss_pred EcceEEEeCCCCchhhhhhcCC
Confidence 58999999997 6655544
No 283
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=23.04 E-value=3.6e+02 Score=20.90 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=48.7
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHH---hhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeeccce
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAID---WASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPE 83 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD---~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~ 83 (128)
+..+++|.||++.|.. ..++..+- -+.. ....||.+.-.++.. ......+...+...|...+..|
T Consensus 51 ~~~~~advVi~~v~~~-----~~v~~v~~~~~g~~~--~~~~g~ivvd~sT~~----p~~~~~~~~~~~~~G~~~vdaP- 118 (292)
T PRK15059 51 QVTEASDIIFIMVPDT-----PQVEEVLFGENGCTK--ASLKGKTIVDMSSIS----PIETKRFARQVNELGGDYLDAP- 118 (292)
T ss_pred HHHhcCCEEEEeCCCh-----HHHHHHHcCCcchhc--cCCCCCEEEECCCCC----HHHHHHHHHHHHHcCCCEEEec-
Confidence 4467899999999964 45555431 1111 234466554444332 1222334444556677777544
Q ss_pred eeeccCCCCCccCCCCCCC-----CHHHHHHHHHHHHHHH
Q 035766 84 YFLNAFQPPAKFDSDGNLI-----DEESKEKLKAVLLALR 118 (128)
Q Consensus 84 ~~i~~~~~~~~fd~~g~l~-----~~~~~~~l~~~~~~l~ 118 (128)
+. +. ..=.++|.+. +++..++++.+++.+.
T Consensus 119 Vs-Gg----~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g 153 (292)
T PRK15059 119 VS-GG----EIGAREGTLSIMVGGDEAVFERVKPLFELLG 153 (292)
T ss_pred CC-CC----HHHHhcCcEEEEEcCCHHHHHHHHHHHHHHc
Confidence 21 11 1111344422 5666777777666553
No 284
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=22.99 E-value=1.8e+02 Score=21.35 Aligned_cols=17 Identities=6% Similarity=-0.310 Sum_probs=13.8
Q ss_pred HHHHHhcCeEEEEcccC
Q 035766 6 YNTFLEFICFHLLTDLF 22 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeY 22 (128)
.+.+.++|.+|+++|-+
T Consensus 63 ~ea~~~aDvVilavp~~ 79 (219)
T TIGR01915 63 AEAAKRADVVILAVPWD 79 (219)
T ss_pred HHHHhcCCEEEEECCHH
Confidence 45678999999999944
No 285
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=22.76 E-value=1.7e+02 Score=22.12 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=33.1
Q ss_pred cccCCCCCcHHHHHHHHhhcCCCCcC-CCCeEEEEeecCCCChHHHHHHHHHhhh
Q 035766 19 TDLFSSFVQGPLKNAIDWASRPPNVW-ADKAAAIVSAAGGSGGARAQYHLRQIGV 72 (128)
Q Consensus 19 tPeYn~~i~~~lKn~iD~l~~~~~~~-~~Kp~~~v~~sg~~gg~~a~~~L~~~l~ 72 (128)
++-|+.|+....+|..+-+.. .. .+.++.++|+| .|+.-+...++.+..
T Consensus 22 ~~t~~~Sv~~G~~~L~~ai~~---~~~~~~~vvV~GyS--QGA~Va~~~~~~l~~ 71 (225)
T PF08237_consen 22 SPTYDESVAEGVANLDAAIRA---AIAAGGPVVVFGYS--QGAVVASNVLRRLAA 71 (225)
T ss_pred CCccchHHHHHHHHHHHHHHh---hccCCCCEEEEEEC--HHHHHHHHHHHHHHh
Confidence 344788888888888877763 22 78889999999 234444455555544
No 286
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=22.72 E-value=2.4e+02 Score=19.94 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=45.3
Q ss_pred hhHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CCCChHHHHHHHHHhhhhcCceee
Q 035766 2 WLLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
|-.+++++.+--.|.+..|. +......+...+.++.. .=..+++-+.-.| | |...+...+...+..++..+.
T Consensus 6 ~~~i~~~l~~~r~i~l~g~I-~~~~~~~~~~~L~~l~~---~~~~~~i~i~INSpG--G~v~~g~~i~~~i~~~~~~v~ 78 (182)
T PF00574_consen 6 WYDIYSRLLNERIIFLNGPI-DEESANRLISQLLYLEN---EDKNKPINIYINSPG--GDVDAGLAIYDAIRSSKAPVT 78 (182)
T ss_dssp EEEHHHHHHTTTEEEEESSB-SHHHHHHHHHHHHHHHH---HTSSSEEEEEEEECE--BCHHHHHHHHHHHHHSSSEEE
T ss_pred EEeHHHHHhCCeEEEECCcc-CHHHHHHHHHHHHHHhc---cCCCceEEEEEcCCC--CccHHHHHHHHHHHhcCCCeE
Confidence 66778888776666666555 55666677777777731 3345677666666 5 445555566666666666543
No 287
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=22.68 E-value=2.1e+02 Score=22.88 Aligned_cols=96 Identities=18% Similarity=0.074 Sum_probs=47.4
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHH-HHhhcCCCCcCCCCeEEEEeec-CCCChHHHHHHHHHhhhhcCceeeccce
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNA-IDWASRPPNVWADKAAAIVSAA-GGSGGARAQYHLRQIGVYLDLHFVNKPE 83 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~-iD~l~~~~~~~~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~~~g~~~~~~~~ 83 (128)
.+.+++||.|+-+.||=- .+|.. +.-+. ... +|=++++++ .+.....-...++.=-+++|++..+ |.
T Consensus 78 ~~av~~aDlViEavpE~l-----~vK~~lf~~l~----~~~-~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~Hffn-P~ 146 (321)
T PRK07066 78 EACVADADFIQESAPERE-----ALKLELHERIS----RAA-KPDAIIASSTSGLLPTDFYARATHPERCVVGHPFN-PV 146 (321)
T ss_pred HHHhcCCCEEEECCcCCH-----HHHHHHHHHHH----HhC-CCCeEEEECCCccCHHHHHHhcCCcccEEEEecCC-cc
Confidence 356789999999988843 33432 22222 111 222245444 2111111122333333467777664 22
Q ss_pred eeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHH
Q 035766 84 YFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLAL 117 (128)
Q Consensus 84 ~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l 117 (128)
-.++.. +.. -|.-+++++.+++.++++++
T Consensus 147 ~~~pLV---EVv--~g~~T~~e~~~~~~~f~~~l 175 (321)
T PRK07066 147 YLLPLV---EVL--GGERTAPEAVDAAMGIYRAL 175 (321)
T ss_pred ccCceE---EEe--CCCCCCHHHHHHHHHHHHHc
Confidence 222321 211 34556788888887777653
No 288
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=22.67 E-value=1.2e+02 Score=22.24 Aligned_cols=43 Identities=5% Similarity=-0.028 Sum_probs=26.9
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
+.++++|++|+.+---..--+...+.+.||+. +|+++..+..+
T Consensus 48 ~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~------~Ggglv~lH~~ 90 (217)
T PF06283_consen 48 ENLKGYDVVVFYNTGGDELTDEQRAALRDYVE------NGGGLVGLHGA 90 (217)
T ss_dssp HCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHH------TT-EEEEEGGG
T ss_pred hHhcCCCEEEEECCCCCcCCHHHHHHHHHHHH------cCCCEEEEccc
Confidence 56899999999877611124556666667773 67888888844
No 289
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=22.67 E-value=1.3e+02 Score=21.64 Aligned_cols=42 Identities=14% Similarity=0.042 Sum_probs=24.5
Q ss_pred CcHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHH
Q 035766 26 VQGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLR 68 (128)
Q Consensus 26 i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~ 68 (128)
+|..--.+++.+......+.||.++++|+++ ..|.....+|.
T Consensus 24 ~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~-~~G~~~a~~L~ 65 (168)
T cd01080 24 IPCTPAGILELLKRYGIDLAGKKVVVVGRSN-IVGKPLAALLL 65 (168)
T ss_pred cCChHHHHHHHHHHcCCCCCCCEEEEECCcH-HHHHHHHHHHh
Confidence 3444445555554322468999999999873 23343444443
No 290
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=22.59 E-value=1.6e+02 Score=20.08 Aligned_cols=70 Identities=7% Similarity=0.058 Sum_probs=38.8
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-CcCCCCeEEEEeec-CCCC-hHHHHHHHHHhhhhcCceee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-NVWADKAAAIVSAA-GGSG-GARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-~~~~~Kp~~~v~~s-g~~g-g~~a~~~L~~~l~~~g~~~~ 79 (128)
..++.+|++|++...-+ +..+.++..|+.... ..-.+.|+.+++.= .... ........+......++..+
T Consensus 72 ~~~~~~d~il~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01866 72 SYYRGAAGALLVYDITR---RETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFM 144 (168)
T ss_pred HHhccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 45578999999877554 556666667774210 12246788888864 2211 11122344455555565544
No 291
>PRK05756 pyridoxamine kinase; Validated
Probab=22.47 E-value=2.9e+02 Score=21.08 Aligned_cols=33 Identities=6% Similarity=-0.041 Sum_probs=21.7
Q ss_pred HhhhhcCceeeccceeeeccCCCCCccC-CCCCCCCH
Q 035766 69 QIGVYLDLHFVNKPEYFLNAFQPPAKFD-SDGNLIDE 104 (128)
Q Consensus 69 ~~l~~~g~~~~~~~~~~i~~~~~~~~fd-~~g~l~~~ 104 (128)
.++..+|..+.+.|.+.++. +..|. ..|...++
T Consensus 23 ~~l~~~g~~~~~~~T~~~s~---~t~~~~~~g~~~~~ 56 (286)
T PRK05756 23 FPMQRLGVNVWPLNTVQFSN---HTGYGKWTGCVMPP 56 (286)
T ss_pred HHHHHcCCcceeeceEeecC---CCCCCCccCeeCCH
Confidence 46788899988888877665 23343 35555555
No 292
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.42 E-value=93 Score=26.83 Aligned_cols=70 Identities=16% Similarity=0.082 Sum_probs=47.4
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CCC-Ch----HHHHHHHHHhhhhcCceee
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GGS-GG----ARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~-gg----~~a~~~L~~~l~~~g~~~~ 79 (128)
+++.+=|+.|++||+ .+-...|+.+|.+......|.-+=-+-+++. -.+ |. ..|...|+..|...|..-+
T Consensus 298 RrFqQDDaHIFCt~~---Qi~~Eik~~l~fl~~vY~~fgf~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~ 373 (560)
T KOG1637|consen 298 RRFQQDDAHIFCTPD---QVKEEIKGCLDFLDYVYGVFGFTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWV 373 (560)
T ss_pred eeecccCceEEecCc---cHHHHHHHHHHHHHHHHHhccccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCce
Confidence 467788999999997 6788899999888643233333444455655 222 32 3566788889988888533
No 293
>PF08540 HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A synthase C terminal; InterPro: IPR013746 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase. Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the C-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1TXT_D 1TVZ_A 1X9E_B 2HDB_B 3V4X_A 3V4N_C 2P8U_A 2FA0_A 2F9A_A 2F82_A ....
Probab=22.39 E-value=45 Score=26.34 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=25.7
Q ss_pred cCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CC
Q 035766 21 LFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GG 57 (128)
Q Consensus 21 eYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~ 57 (128)
.|-+|+-..|-.+|..-.. +.+.||.+++.+++ |-
T Consensus 157 ~YTaSly~~L~SlL~~~~~--~~l~GkrI~~FSYGSG~ 192 (282)
T PF08540_consen 157 MYTASLYLGLASLLSSAEA--DDLAGKRIGMFSYGSGL 192 (282)
T ss_dssp -GGGHHHHHHHHHHHHHHS--CHHTT-EEEEEEEETTT
T ss_pred eehHHHHHHHHHHhhccCc--cccCCCEEEEEEecCCc
Confidence 4667777778888865544 68899999999998 54
No 294
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.37 E-value=3.7e+02 Score=22.38 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=31.8
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHH----------HhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCc
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAI----------DWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDL 76 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~i----------D~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~ 76 (128)
.+.++| +|+.||-....- +.++.+- +++.+ ...++| +|+.+|..|=......+..+|...|-
T Consensus 60 ~~~~~d-~vV~SPgI~~~~-p~~~~a~~~gi~v~~e~el~~~---~~~~~~--~IaVTGTnGKTTTt~ll~~iL~~~g~ 131 (454)
T PRK01368 60 RWQNLD-KIVLSPGIPLTH-EIVKIAKNFNIPITSDIDLLFE---KSKNLK--FIAITGTNGKSTTTALISHILNSNGL 131 (454)
T ss_pred HhhCCC-EEEECCCCCCCC-HHHHHHHHCCCceecHHHHHHH---HhcCCC--EEEEECCCcHHHHHHHHHHHHHhcCC
Confidence 355677 567788776654 4455553 33221 222333 34444554544444556666665554
No 295
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=22.36 E-value=49 Score=25.61 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=15.1
Q ss_pred hcCeEEEEccc----CCCCCcHH
Q 035766 11 EFICFHLLTDL----FSSFVQGP 29 (128)
Q Consensus 11 ~AD~ii~~tPe----Yn~~i~~~ 29 (128)
.+||+|++||. ||.|.=|.
T Consensus 133 ~gDGlIVSTPtGSTAY~lSAGGP 155 (246)
T PRK04761 133 VCDGVLVATPAGSTAYNLSAHGP 155 (246)
T ss_pred ecCeEEEeCCcCHHHHHhhCCCc
Confidence 58999999997 77665555
No 296
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=22.33 E-value=1.6e+02 Score=19.77 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=26.8
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhc---CC--CCcCCCCeEEEEeec
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWAS---RP--PNVWADKAAAIVSAA 55 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~---~~--~~~~~~Kp~~~v~~s 55 (128)
...++.+|++|++....+. ..+.+.-.|.. .. .....++|+.+++.=
T Consensus 67 ~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNP---KSFESLDSWRDEFLIQASPSDPENFPFVVLGNK 118 (172)
T ss_pred HHHhcCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhcCccCCCCceEEEEEEC
Confidence 3456789999999765543 23333333321 10 023457899888753
No 297
>PLN02978 pyridoxal kinase
Probab=22.32 E-value=1.9e+02 Score=22.69 Aligned_cols=42 Identities=7% Similarity=0.016 Sum_probs=27.5
Q ss_pred CCCeEEEEe--ecCCCChHHHHHHHHHhhhhcCceeeccceeeeccC
Q 035766 45 ADKAAAIVS--AAGGSGGARAQYHLRQIGVYLDLHFVNKPEYFLNAF 89 (128)
Q Consensus 45 ~~Kp~~~v~--~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i~~~ 89 (128)
.-|.++.+. ...+++|..+. .-. |..+|..+.+.|.+.+++.
T Consensus 13 ~~~~vl~iqs~~~~g~~g~~~a--~~p-l~~~g~~v~~lpTv~lSnh 56 (308)
T PLN02978 13 STGRVLSIQSHTVHGYVGNKSA--VFP-LQLLGFDVDPINSVQFSNH 56 (308)
T ss_pred CCCcEEEEeCeeeecCCCceeh--Hhh-HHHcCCeeeeeccEeecCC
Confidence 347788887 44234444322 223 7889999998899888763
No 298
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=22.31 E-value=1.4e+02 Score=24.70 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=21.3
Q ss_pred CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 42 NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 42 ~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
.++.||.++++|.+ .-| .. +-..+..+||.++
T Consensus 147 ~~L~gktvGIiG~G-~IG-~~----vA~~~~~fGm~V~ 178 (409)
T PRK11790 147 FEVRGKTLGIVGYG-HIG-TQ----LSVLAESLGMRVY 178 (409)
T ss_pred ccCCCCEEEEECCC-HHH-HH----HHHHHHHCCCEEE
Confidence 46899999999987 222 22 2233557788876
No 299
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=22.30 E-value=1.3e+02 Score=23.38 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=38.3
Q ss_pred hcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCC--CCeEEEEeecCCCChHHHHHHHHHhhhhcCceeec
Q 035766 11 EFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWA--DKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVN 80 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~--~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~ 80 (128)
+.|.+|+.+| |..-||.-|.= ..|. ++|+.++|-+ -|.++-+.|.+- .+|-.+++
T Consensus 60 ~pDfvi~isP--NpaaPGP~kAR--------E~l~~s~~PaiiigDa---Pg~~vkdeleeq--GlGYIivk 116 (277)
T COG1927 60 NPDFVIYISP--NPAAPGPKKAR--------EILSDSDVPAIIIGDA---PGLKVKDELEEQ--GLGYIIVK 116 (277)
T ss_pred CCCEEEEeCC--CCCCCCchHHH--------HHHhhcCCCEEEecCC---ccchhHHHHHhc--CCeEEEec
Confidence 4799999999 77778876642 3444 8999999877 246667777654 45555554
No 300
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=22.19 E-value=46 Score=27.75 Aligned_cols=17 Identities=12% Similarity=-0.222 Sum_probs=12.5
Q ss_pred HhcCeEEEEcccCCCCC
Q 035766 10 LEFICFHLLTDLFSSFV 26 (128)
Q Consensus 10 ~~AD~ii~~tPeYn~~i 26 (128)
.+|||+|++||-=.-.|
T Consensus 284 vq~DGliVaTPTGSTAY 300 (409)
T KOG2178|consen 284 VQGDGLIVATPTGSTAY 300 (409)
T ss_pred EecceEEEecCCchhhh
Confidence 36999999999744333
No 301
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.13 E-value=1.7e+02 Score=23.41 Aligned_cols=35 Identities=9% Similarity=0.043 Sum_probs=21.2
Q ss_pred cHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChH
Q 035766 27 QGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGA 61 (128)
Q Consensus 27 ~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~ 61 (128)
|..-+..+..+.+-+-.+.||.++++|.||..|..
T Consensus 140 PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~P 174 (301)
T PRK14194 140 PCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKP 174 (301)
T ss_pred CCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHH
Confidence 33333344444321147899999999998665543
No 302
>PRK06436 glycerate dehydrogenase; Provisional
Probab=21.95 E-value=1.6e+02 Score=23.23 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=20.7
Q ss_pred CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 42 NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 42 ~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
.++.||.++++|.+ .-|..-+ ..+..+|+.++
T Consensus 118 ~~L~gktvgIiG~G-~IG~~vA-----~~l~afG~~V~ 149 (303)
T PRK06436 118 KLLYNKSLGILGYG-GIGRRVA-----LLAKAFGMNIY 149 (303)
T ss_pred CCCCCCEEEEECcC-HHHHHHH-----HHHHHCCCEEE
Confidence 47889999999987 2222221 23556788765
No 303
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.95 E-value=2e+02 Score=19.10 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=28.8
Q ss_pred CceeeccceeeeccCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 035766 75 DLHFVNKPEYFLNAFQPPAKFDSDGNLIDEESKEKLKAVLLALRAFTLR 123 (128)
Q Consensus 75 g~~~~~~~~~~i~~~~~~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~~~ 123 (128)
.+..+. ..+++++ .-..|++|....+..+++.++.++++....++
T Consensus 15 ~av~~g-~~l~vSG---q~~~d~~~~~~~~d~~~Q~~~~~~ni~~~L~~ 59 (119)
T cd06154 15 RAVRVG-NWVFVSG---TTGYDYDGMVMPGDAYEQTRQCLEIIEAALAE 59 (119)
T ss_pred cEEEEC-CEEEEeC---cCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 333343 3566665 34566666665567888888888888776654
No 304
>PHA03200 uracil DNA glycosylase; Provisional
Probab=21.89 E-value=87 Score=24.53 Aligned_cols=28 Identities=14% Similarity=-0.125 Sum_probs=22.9
Q ss_pred HhcCeEEEEcccCCCCCcHHHHHHHHhhc
Q 035766 10 LEFICFHLLTDLFSSFVQGPLKNAIDWAS 38 (128)
Q Consensus 10 ~~AD~ii~~tPeYn~~i~~~lKn~iD~l~ 38 (128)
-+|+|+=|++|. +-.+|+.|||.+-=+.
T Consensus 98 gqA~GLaFSV~~-~~~~PpSL~NIfKEL~ 125 (255)
T PHA03200 98 GSACGLAFGTVR-GRSAPPSLKNVFRELE 125 (255)
T ss_pred CccceEEEEeCC-CCCCCccHHHHHHHHH
Confidence 579999999986 3468999999986664
No 305
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=21.80 E-value=3.6e+02 Score=20.45 Aligned_cols=50 Identities=8% Similarity=0.120 Sum_probs=33.0
Q ss_pred hhHHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 2 WLLTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
|..+++++.+ +.+||..-+=+......+..-+-+|.. +=.+||+-+---|
T Consensus 44 ~~d~~~~ll~-~Riifl~~~Idd~~a~~i~aqLl~L~~---~~~~~~I~lyINS 93 (221)
T PRK14514 44 QMDVFSRLMM-DRIIFLGTQIDDYTANTIQAQLLYLDS---VDPGKDISIYINS 93 (221)
T ss_pred ccCHHHHHhh-CcEEEECCEEcHHHHHHHHHHHHHHhc---cCCCCCEEEEEEC
Confidence 4556777777 455555555566778888888888853 3345777777766
No 306
>PLN02928 oxidoreductase family protein
Probab=21.78 E-value=1.5e+02 Score=23.83 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=21.1
Q ss_pred CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 42 NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 42 ~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
..+.||.++|+|.+. -| .. +-..+..+||.++
T Consensus 155 ~~l~gktvGIiG~G~-IG-~~----vA~~l~afG~~V~ 186 (347)
T PLN02928 155 DTLFGKTVFILGYGA-IG-IE----LAKRLRPFGVKLL 186 (347)
T ss_pred cCCCCCEEEEECCCH-HH-HH----HHHHHhhCCCEEE
Confidence 468999999999861 22 22 2233557788776
No 307
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=21.72 E-value=2.5e+02 Score=18.53 Aligned_cols=45 Identities=7% Similarity=-0.023 Sum_probs=26.4
Q ss_pred HHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 5 TYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 5 ~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
+...+..||++|++....++-.+.. +..+..+. ....||+.++..
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~-~~~~~~~~----~~~~~~~ilv~N 112 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQT-REHLEILE----LLGIKRGLVVLT 112 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhH-HHHHHHHH----HhCCCcEEEEEE
Confidence 4455778999999988776433333 33334432 223357766664
No 308
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=21.70 E-value=2.1e+02 Score=23.96 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=29.9
Q ss_pred hhHHHHHHHhcCeEEEEccc----CCCCCc-------HHHHHHHHhhcCCCCcCCCCeEEEEeec-C
Q 035766 2 WLLTYNTFLEFICFHLLTDL----FSSFVQ-------GPLKNAIDWASRPPNVWADKAAAIVSAA-G 56 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPe----Yn~~i~-------~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g 56 (128)
|..+.+.+.+ .|.....-. |.+-.+ ..||..|+.+. ....++||.++|.| |
T Consensus 110 ~~~li~~L~~-~GY~~~~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~---~~~g~~kV~LVGHSMG 172 (440)
T PLN02733 110 FHDMIEQLIK-WGYKEGKTLFGFGYDFRQSNRLPETMDGLKKKLETVY---KASGGKKVNIISHSMG 172 (440)
T ss_pred HHHHHHHHHH-cCCccCCCcccCCCCccccccHHHHHHHHHHHHHHHH---HHcCCCCEEEEEECHh
Confidence 5566677665 455543322 322323 34555555554 35678999999999 5
No 309
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=21.61 E-value=2.2e+02 Score=20.79 Aligned_cols=70 Identities=9% Similarity=-0.100 Sum_probs=38.2
Q ss_pred hHHHHHHHhcCeEEEEcccCCC------CCcHHHHHHHHhhcCCCCcCCCCeEEEEeec-CCCC----h---HHHHHHHH
Q 035766 3 LLTYNTFLEFICFHLLTDLFSS------FVQGPLKNAIDWASRPPNVWADKAAAIVSAA-GGSG----G---ARAQYHLR 68 (128)
Q Consensus 3 ~~~~~~i~~AD~ii~~tPeYn~------~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s-g~~g----g---~~a~~~L~ 68 (128)
..+++.+..+|++|++..--.+ ++....+..+..+. .+..||+.++..= ...+ . ......++
T Consensus 92 ~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~ 167 (219)
T cd01883 92 PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR----TLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELS 167 (219)
T ss_pred HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH----HcCCCeEEEEEEccccccccccHHHHHHHHHHHH
Confidence 3456677889999999877664 33444444444442 3444776654432 2111 1 12334566
Q ss_pred HhhhhcCc
Q 035766 69 QIGVYLDL 76 (128)
Q Consensus 69 ~~l~~~g~ 76 (128)
..+..++.
T Consensus 168 ~~l~~~~~ 175 (219)
T cd01883 168 PFLKKVGY 175 (219)
T ss_pred HHHHHcCC
Confidence 56666654
No 310
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.61 E-value=3.6e+02 Score=21.36 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=50.2
Q ss_pred CCcHHHHHHHHhhcCCC-----------CcC----CCCeEEEEeecCCCChHHHHHHHHHh---hhhcCceeeccceeee
Q 035766 25 FVQGPLKNAIDWASRPP-----------NVW----ADKAAAIVSAAGGSGGARAQYHLRQI---GVYLDLHFVNKPEYFL 86 (128)
Q Consensus 25 ~i~~~lKn~iD~l~~~~-----------~~~----~~Kp~~~v~~sg~~gg~~a~~~L~~~---l~~~g~~~~~~~~~~i 86 (128)
--...+|..||.+++-. ..| ..-|-. +.-|..|+....+.++.+ .+..|+.++| ++-.
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~l--t~~g~~~~~yT~~di~elv~yA~~rgI~vIP--EId~ 90 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKL--QQKASDGLYYTQEQIREVVAYARDRGIRVVP--EIDV 90 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccc--cccCCCCCccCHHHHHHHHHHHHHcCCEEEE--eecC
Confidence 33788999999997532 112 122322 111333444444555555 4577888885 5544
Q ss_pred ccCC-----CCCccCC--------------CC--CCCCHHHHHHHHHHHHHHHHH
Q 035766 87 NAFQ-----PPAKFDS--------------DG--NLIDEESKEKLKAVLLALRAF 120 (128)
Q Consensus 87 ~~~~-----~~~~fd~--------------~g--~l~~~~~~~~l~~~~~~l~~~ 120 (128)
++-. ....+.. +. .+.++++.+.++++++++...
T Consensus 91 PGH~~a~~~~ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~l 145 (311)
T cd06570 91 PGHASAIAVAYPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGEMAEL 145 (311)
T ss_pred ccchHHHHHhCHHhccCCCccccccccccCCCccCCCChhHHHHHHHHHHHHHHh
Confidence 4310 0000100 11 245688999999999998764
No 311
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=21.38 E-value=2.2e+02 Score=19.52 Aligned_cols=48 Identities=17% Similarity=0.012 Sum_probs=33.5
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeecC
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAAG 56 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg 56 (128)
.+.+.++.+|.++.+.+-.... ....|++++-+... .=|.+.++|..|
T Consensus 53 ~~~~al~~~d~vi~~~~~~~~~-~~~~~~~~~a~~~~----~~~~~v~~s~~~ 100 (183)
T PF13460_consen 53 SVKAALKGADAVIHAAGPPPKD-VDAAKNIIEAAKKA----GVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHTTSSEEEECCHSTTTH-HHHHHHHHHHHHHT----TSSEEEEEEETT
T ss_pred hhhhhhhhcchhhhhhhhhccc-cccccccccccccc----ccccceeeeccc
Confidence 4567888999999998754444 77788999988542 234555666544
No 312
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=21.33 E-value=1.7e+02 Score=20.85 Aligned_cols=16 Identities=0% Similarity=-0.294 Sum_probs=12.5
Q ss_pred HHHHHHHhcCeEEEEc
Q 035766 4 LTYNTFLEFICFHLLT 19 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~t 19 (128)
.-.+.+++||.|+...
T Consensus 18 ~a~~~l~~advv~~~~ 33 (210)
T PF00590_consen 18 RALEALKNADVVIGPE 33 (210)
T ss_dssp HHHHHHHHSSEEEEET
T ss_pred HHHHHHHhCCcccccc
Confidence 3468899999997666
No 313
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=21.29 E-value=1.5e+02 Score=25.19 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=32.6
Q ss_pred cHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 27 QGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 27 ~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
+..++.++++|.. ..||+.++|.+.... .+.+.++.+.+.+|+.++
T Consensus 200 ~~~l~~~~~~L~~-----AkrPvIi~G~g~~~~--~a~~~l~~lae~l~iPV~ 245 (569)
T PRK09259 200 PEAVDRALDLLKK-----AKRPLIILGKGAAYA--QADEQIREFVEKTGIPFL 245 (569)
T ss_pred HHHHHHHHHHHHh-----CCCCEEEECcCcccc--ChHHHHHHHHHHHCCCEE
Confidence 4678889999853 468999998773322 245677777777787766
No 314
>PTZ00099 rab6; Provisional
Probab=21.29 E-value=1.2e+02 Score=21.48 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=25.2
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCC-CcCCCCeEEEEee
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPP-NVWADKAAAIVSA 54 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~-~~~~~Kp~~~v~~ 54 (128)
.++.||++|++...=+ +..+.+.-+|+..-. ..-.+.|+.+++.
T Consensus 49 ~~~~ad~~ilv~D~t~---~~sf~~~~~w~~~i~~~~~~~~piilVgN 93 (176)
T PTZ00099 49 YIRDSAAAIVVYDITN---RQSFENTTKWIQDILNERGKDVIIALVGN 93 (176)
T ss_pred HhCCCcEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 4679999999977444 334555555553110 1113566667665
No 315
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=21.29 E-value=1.7e+02 Score=21.69 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=17.4
Q ss_pred cCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCcee
Q 035766 43 VWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHF 78 (128)
Q Consensus 43 ~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~ 78 (128)
.+.||+++|+|.+ .-+...++.++. .|+.+
T Consensus 6 ~l~gk~vlVvGgG-----~va~rk~~~Ll~-~ga~V 35 (205)
T TIGR01470 6 NLEGRAVLVVGGG-----DVALRKARLLLK-AGAQL 35 (205)
T ss_pred EcCCCeEEEECcC-----HHHHHHHHHHHH-CCCEE
Confidence 4789999999833 333334444443 46544
No 316
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=21.19 E-value=2.5e+02 Score=18.62 Aligned_cols=47 Identities=6% Similarity=-0.019 Sum_probs=28.5
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCC--CCcCCCCeEEEEeec
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRP--PNVWADKAAAIVSAA 55 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~--~~~~~~Kp~~~v~~s 55 (128)
...+..+|+++++....+ +..+.++..|+..- .....++|+.+++.=
T Consensus 61 ~~~~~~~~~~i~v~D~~~---~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd00878 61 KHYYENTNGIIFVVDSSD---RERIEEAKEELHKLLNEEELKGVPLLIFANK 109 (158)
T ss_pred HHHhccCCEEEEEEECCC---HHHHHHHHHHHHHHHhCcccCCCcEEEEeec
Confidence 345678999999754444 44555555555310 012457888888754
No 317
>PRK12474 hypothetical protein; Provisional
Probab=21.17 E-value=1.9e+02 Score=24.38 Aligned_cols=46 Identities=7% Similarity=0.030 Sum_probs=31.6
Q ss_pred cHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 27 QGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 27 ~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
+..++.+.+.|.. ..||+.+++.+.. ...+.+.|+.+...+|+.++
T Consensus 188 ~~~i~~~~~~L~~-----A~rPvil~G~g~~--~~~a~~~l~~lae~~g~PV~ 233 (518)
T PRK12474 188 AETVERIAALLRN-----GKKSALLLRGSAL--RGAPLEAAGRIQAKTGVRLY 233 (518)
T ss_pred HHHHHHHHHHHHc-----CCCcEEEECCccc--hhhHHHHHHHHHHHHCCCEE
Confidence 3457777777754 3689999875521 12345678888888888776
No 318
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=21.13 E-value=2.1e+02 Score=21.98 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=36.9
Q ss_pred CCcHHHHHHHHhhcCCCCcCCCC--eEEEEeec-CCCChHHHHHHHHHhhhhcCceee
Q 035766 25 FVQGPLKNAIDWASRPPNVWADK--AAAIVSAA-GGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 25 ~i~~~lKn~iD~l~~~~~~~~~K--p~~~v~~s-g~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
+.-+.+-.+.||+. +.++|| .+++|-++ +.+-...-.+.-+.+|..+|+.+.
T Consensus 12 ~~~~~~~~~~~~i~---n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~ 66 (224)
T COG3340 12 SFEDVLEHFLPFIA---NFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVS 66 (224)
T ss_pred ccchhhhhhhHHHH---HHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeee
Confidence 34456666777775 345555 99999988 434444566788899999999886
No 319
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=21.02 E-value=2.5e+02 Score=22.56 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=34.7
Q ss_pred HHHHhcCeEEEEcccCCCCCcHH---HHHHHHhhcCC------------CCcCC-CCeEEEEeecCCCChHHHHHHHHHh
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGP---LKNAIDWASRP------------PNVWA-DKAAAIVSAAGGSGGARAQYHLRQI 70 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~---lKn~iD~l~~~------------~~~~~-~Kp~~~v~~sg~~gg~~a~~~L~~~ 70 (128)
-|+..||.+++.|| |.. +++. .+-+.|.+... .+.|. -||+.-+.++|.+.+ ++..+
T Consensus 165 ~RLaGaD~vh~~t~-~Gk-~~g~~~~~~~~~~~~~~~~~~~d~~~g~~~~q~~~~~k~~~Pv~SgG~~~g-----~vp~~ 237 (309)
T PF00016_consen 165 MRLAGADHVHFGTP-YGK-FEGDRSEVQGFADECRESMLEADAARGPFFDQDWGGMKPVFPVPSGGMHPG-----QVPEL 237 (309)
T ss_dssp HHHHT-SEEEEE-S-SSS-BTTHHHHHHHHHHHHHHSEEHHBGGGTBHSHEEBTTS---EEEEESSBSGG-----GHHHH
T ss_pred eecceeeeeccCcc-ccc-cccccccccchhhhcccchhccccccceeecccccccccccccccCccchh-----hhHHH
Confidence 38999999999999 654 3332 23333333110 02343 588888887766544 34455
Q ss_pred hhhcCceee
Q 035766 71 GVYLDLHFV 79 (128)
Q Consensus 71 l~~~g~~~~ 79 (128)
++.+|..++
T Consensus 238 ~~~~G~Dvi 246 (309)
T PF00016_consen 238 YRDLGTDVI 246 (309)
T ss_dssp HHHHTSSSE
T ss_pred HHhhccCcc
Confidence 667775444
No 320
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=20.96 E-value=78 Score=22.45 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=32.5
Q ss_pred HHHHHhcCeEEEEcccCCCC----CcHH---HHHHHHhhcCCCC--cCCCCeEEEEeecCCCChHHHHH
Q 035766 6 YNTFLEFICFHLLTDLFSSF----VQGP---LKNAIDWASRPPN--VWADKAAAIVSAAGGSGGARAQY 65 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~----i~~~---lKn~iD~l~~~~~--~~~~Kp~~~v~~sg~~gg~~a~~ 65 (128)
...+.+.-++++++|+|.-+ +|.. ++.++.|+..... .+....+.++|.| .||..+..
T Consensus 21 ~~~la~~~g~~v~~~~Yrl~p~~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~S--AGg~la~~ 87 (211)
T PF07859_consen 21 AARLAAERGFVVVSIDYRLAPEAPFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDS--AGGHLALS 87 (211)
T ss_dssp HHHHHHHHTSEEEEEE---TTTSSTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEET--HHHHHHHH
T ss_pred HHHHHhhccEEEEEeeccccccccccccccccccceeeeccccccccccccceEEeecc--cccchhhh
Confidence 34455445788899988755 3444 4567777754100 1556788888888 23444443
No 321
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=20.95 E-value=2.8e+02 Score=19.14 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=25.1
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 035766 92 PAKFDSDGNLIDEESKEKLKAVLLALRAFTLR 123 (128)
Q Consensus 92 ~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~~~ 123 (128)
.+.|+ -|.-.+++.++.++++++.+.++++.
T Consensus 114 ~~~~~-~g~~LS~~v~~a~~~~~~~i~~~i~~ 144 (146)
T TIGR00142 114 PDIVG-FYYPMSQPVKDAVETLYQRLIGWEGN 144 (146)
T ss_pred eeeee-cCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 45665 66777899999999999999888764
No 322
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=20.94 E-value=1.3e+02 Score=24.34 Aligned_cols=33 Identities=9% Similarity=-0.185 Sum_probs=27.4
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcC
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASR 39 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~ 39 (128)
.+..+.||.+|+-||.=. .-++..|+++|++..
T Consensus 134 ~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpE 166 (340)
T TIGR01723 134 REAVEDADIIITWLPKGN-KQPDIIKKFIDDIPE 166 (340)
T ss_pred HHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCC
Confidence 467899999999999633 458999999999964
No 323
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=20.92 E-value=67 Score=21.92 Aligned_cols=23 Identities=9% Similarity=-0.373 Sum_probs=14.9
Q ss_pred hhHHHHHHHhcCeEEEEcccCCC
Q 035766 2 WLLTYNTFLEFICFHLLTDLFSS 24 (128)
Q Consensus 2 ~~~~~~~i~~AD~ii~~tPeYn~ 24 (128)
|..+.+.+.++|.+|-+||-=..
T Consensus 66 ~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 66 LEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp GGGHCHHHHTESEEEE-SSTTST
T ss_pred HHHHHHHHhhCCeEEEecCCCCc
Confidence 44555677788888888875444
No 324
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=20.84 E-value=1.6e+02 Score=19.84 Aligned_cols=51 Identities=6% Similarity=-0.065 Sum_probs=32.6
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec--CCCChHHHH
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA--GGSGGARAQ 64 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s--g~~gg~~a~ 64 (128)
.+.+.+.++|.++++ |+++-.++.+... ..=.|+||.+|-.- |.-.|...+
T Consensus 41 e~~~~~~~~DvvLlG---------PQv~y~~~~~~~~-~~~~giPV~vI~~~dYG~mnG~kvL 93 (102)
T COG1440 41 ELSEYIDNADVVLLG---------PQVRYMLKQLKEA-AEEKGIPVEVIDMLDYGMMNGEKVL 93 (102)
T ss_pred HHHHhhhcCCEEEEC---------hHHHHHHHHHHHH-hcccCCCeEEeCHHHccCcCcHHHH
Confidence 456777888887764 6677777666531 12245799999876 555554443
No 325
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]
Probab=20.84 E-value=2.3e+02 Score=24.14 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=32.5
Q ss_pred cCCCCeEEEEeec-CCCChHHHHHHHHHhhhhcCceee
Q 035766 43 VWADKAAAIVSAA-GGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 43 ~~~~Kp~~~v~~s-g~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
.-..|.+|++.-+ |..|...++.+|+..+..-|-..+
T Consensus 263 ardA~~iGlivGTLG~qg~~~vl~~L~~~~~~~Gkk~y 300 (453)
T KOG2648|consen 263 ARDARTIGLIVGTLGRQGNREVLEHLRKLLKAAGKKSY 300 (453)
T ss_pred HhcCCeEEEEEecccccCCHHHHHHHHHHHHHcCCceE
Confidence 5678999999988 999999999999999998887765
No 326
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=20.80 E-value=4.4e+02 Score=22.36 Aligned_cols=32 Identities=6% Similarity=0.024 Sum_probs=20.6
Q ss_pred CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 42 NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 42 ~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
..+.||++++.+-+ ..+ ..|-..|..+||.++
T Consensus 310 ~~L~GKrvai~Gdp-----~~~-i~LarfL~elGmevV 341 (457)
T CHL00073 310 DLVRGKSVFFMGDN-----LLE-ISLARFLIRCGMIVY 341 (457)
T ss_pred HHHCCCEEEEECCC-----cHH-HHHHHHHHHCCCEEE
Confidence 46899999855422 222 234455667999988
No 327
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=20.77 E-value=1.9e+02 Score=20.69 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=33.3
Q ss_pred HHHHhhcCCCCcCCCC-eEEEEeecCCCChHHHHHHHHHhhhhcCceeeccceeeeccCCCCCccCCC
Q 035766 32 NAIDWASRPPNVWADK-AAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNKPEYFLNAFQPPAKFDSD 98 (128)
Q Consensus 32 n~iD~l~~~~~~~~~K-p~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~~~~~i~~~~~~~~fd~~ 98 (128)
..|||+.. -.+| ...++-. |.+ .+..-.||.-+......++ ++.+++....+.|--.
T Consensus 55 ~Lid~Ihe----a~~~~~~IvINp-ga~--THTSvAlrDAi~av~iP~v---EVHlSNihaRE~FRhh 112 (146)
T COG0757 55 ELIDWIHE----ARGKAGDIVINP-GAY--THTSVALRDAIAAVSIPVV---EVHLSNIHAREEFRHH 112 (146)
T ss_pred HHHHHHHH----hhccCCeEEEcC-ccc--hhhHHHHHHHHHhcCCCEE---EEEecCchhccccccc
Confidence 46888853 2333 3233333 333 3334457777777777776 6778876667778633
No 328
>PRK10985 putative hydrolase; Provisional
Probab=20.77 E-value=1.9e+02 Score=22.48 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=22.1
Q ss_pred HHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHH
Q 035766 28 GPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHL 67 (128)
Q Consensus 28 ~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L 67 (128)
.-++.+++++.. .+..+++.++|.| .||..+..++
T Consensus 115 ~D~~~~i~~l~~---~~~~~~~~~vG~S--~GG~i~~~~~ 149 (324)
T PRK10985 115 EDARFFLRWLQR---EFGHVPTAAVGYS--LGGNMLACLL 149 (324)
T ss_pred HHHHHHHHHHHH---hCCCCCEEEEEec--chHHHHHHHH
Confidence 445667888863 4667789999988 2344433333
No 329
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=20.75 E-value=2.9e+02 Score=23.07 Aligned_cols=50 Identities=6% Similarity=-0.124 Sum_probs=27.9
Q ss_pred HHHHHHHhcCeEEEEcccCCC---CCcHHHHHHHHhhcCCCCcCCCCeEEEEe
Q 035766 4 LTYNTFLEFICFHLLTDLFSS---FVQGPLKNAIDWASRPPNVWADKAAAIVS 53 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~---~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~ 53 (128)
+.++.+..+|++|++...-+. ..-..++.+.+++..-...+.+||..++.
T Consensus 229 ~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~ 281 (424)
T PRK12297 229 QFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVA 281 (424)
T ss_pred HHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEE
Confidence 455667889999998776432 33344555555554211223445554444
No 330
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=20.65 E-value=90 Score=21.73 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=27.5
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHH-hhcCCCCcCCCCeEEEEee
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAID-WASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD-~l~~~~~~~~~Kp~~~v~~ 54 (128)
.++.||++|++-..-+ +..+.++.+ |+..-...-.++|+.+++.
T Consensus 69 ~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~n 113 (187)
T cd04132 69 SYPDVDVLLICYAVDN---PTSLDNVEDKWFPEVNHFCPGTPIMLVGL 113 (187)
T ss_pred hCCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 3568999999966554 566777754 6531101124678877774
No 331
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=20.52 E-value=2.2e+02 Score=22.71 Aligned_cols=51 Identities=10% Similarity=-0.084 Sum_probs=30.9
Q ss_pred HHHHHHHhcCeEEEEcccCCCCCc---HHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 4 LTYNTFLEFICFHLLTDLFSSFVQ---GPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 4 ~~~~~i~~AD~ii~~tPeYn~~i~---~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
+.++.+..+|++|++...-+...+ ..++.+...+..-...+.+||..++..
T Consensus 228 ~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~N 281 (329)
T TIGR02729 228 RFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLN 281 (329)
T ss_pred HHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEe
Confidence 345667789999998776554222 344444444432113456889888874
No 332
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=20.51 E-value=1.2e+02 Score=22.24 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=26.6
Q ss_pred HHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEee
Q 035766 8 TFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSA 54 (128)
Q Consensus 8 ~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~ 54 (128)
-++.||++|++-..-+..=.-.++.+++.+.+ .-.+.|+.+++.
T Consensus 64 ~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~---~~~~~piilvgN 107 (200)
T smart00176 64 YYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR---VCENIPIVLCGN 107 (200)
T ss_pred HhcCCCEEEEEEECCChHHHHHHHHHHHHHHH---hCCCCCEEEEEE
Confidence 46789999999666554333334555555533 224667777775
No 333
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=20.42 E-value=1.8e+02 Score=19.36 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=28.3
Q ss_pred HHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 7 NTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 7 ~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
..++.+|+++++-..-+ +..+.+.-+|+..-.....+.|+.+++.=
T Consensus 70 ~~~~~~~~~v~v~d~~~---~~s~~~l~~~~~~~~~~~~~~p~iiv~nK 115 (162)
T cd04106 70 AYYRGAQACILVFSTTD---RESFEAIESWKEKVEAECGDIPMVLVQTK 115 (162)
T ss_pred HHhcCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 34678999998865544 44566666666421123357888877754
No 334
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=20.42 E-value=4.2e+02 Score=20.63 Aligned_cols=35 Identities=9% Similarity=0.120 Sum_probs=24.1
Q ss_pred EcccCCCCCcH--HHHHHHHhhcCCCCcCCCCeEEEEeec
Q 035766 18 LTDLFSSFVQG--PLKNAIDWASRPPNVWADKAAAIVSAA 55 (128)
Q Consensus 18 ~tPeYn~~i~~--~lKn~iD~l~~~~~~~~~Kp~~~v~~s 55 (128)
-++.||.-..+ .+..++.... ..+.||.++++|++
T Consensus 124 ~va~~n~~~~Ae~ai~~al~~~~---~~l~gk~v~IiG~G 160 (287)
T TIGR02853 124 DVAIYNSIPTAEGAIMMAIEHTD---FTIHGSNVMVLGFG 160 (287)
T ss_pred ceEEEccHhHHHHHHHHHHHhcC---CCCCCCEEEEEcCh
Confidence 46778865554 4555555443 37889999999976
No 335
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=20.42 E-value=3.1e+02 Score=19.04 Aligned_cols=11 Identities=0% Similarity=-0.429 Sum_probs=8.8
Q ss_pred HhcCeEEEEcc
Q 035766 10 LEFICFHLLTD 20 (128)
Q Consensus 10 ~~AD~ii~~tP 20 (128)
...|.+|+=||
T Consensus 91 ~~~d~viiDtp 101 (179)
T cd03110 91 EGAELIIIDGP 101 (179)
T ss_pred cCCCEEEEECc
Confidence 56788888887
No 336
>PF11056 UvsY: Recombination, repair and ssDNA binding protein UvsY; InterPro: IPR021289 UvsY protein enhances the rate of single-stranded-DNA-dependent ATP hydrolysis by UvsX protein. The enhancement of ATP hydrolysis by UvsY protein is shown to result from the ability of UvsY protein to increase the affinity of UvsX protein for single-stranded DNA [].
Probab=20.38 E-value=59 Score=22.77 Aligned_cols=10 Identities=50% Similarity=0.903 Sum_probs=8.1
Q ss_pred HHHHHHHHhh
Q 035766 28 GPLKNAIDWA 37 (128)
Q Consensus 28 ~~lKn~iD~l 37 (128)
=.+||+|||-
T Consensus 114 f~IKnaIe~r 123 (129)
T PF11056_consen 114 FQIKNAIEWR 123 (129)
T ss_pred hHHHHHHHHH
Confidence 3689999996
No 337
>TIGR00140 hupD hydrogenase expression/formation protein. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease.
Probab=20.37 E-value=2.6e+02 Score=18.76 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=26.8
Q ss_pred CCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 035766 92 PAKFDSDGNLIDEESKEKLKAVLLALRAFTLRL 124 (128)
Q Consensus 92 ~~~fd~~g~l~~~~~~~~l~~~~~~l~~~~~~~ 124 (128)
.+.|++-|.-.+++.++.++++++.+.++++..
T Consensus 101 ~~~~~~~g~~LS~~v~~av~~~~~~i~~~l~~~ 133 (134)
T TIGR00140 101 PEELEDYGGSLSPEVAEAIPPAIEIALAQLAEW 133 (134)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 466766777778999999999999998887653
No 338
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=20.25 E-value=2.3e+02 Score=20.28 Aligned_cols=25 Identities=4% Similarity=0.041 Sum_probs=16.0
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhh
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWA 37 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l 37 (128)
.+.+...|.|||.|| ..++.+++.+
T Consensus 44 ~~~~~~~~~iiftS~-------~av~~~~~~~ 68 (239)
T cd06578 44 LADLDEYDWLIFTSP-------NAVEAFFEAL 68 (239)
T ss_pred HHhcCCCCEEEEECH-------HHHHHHHHHH
Confidence 345557888888888 3455555544
No 339
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=20.25 E-value=1.8e+02 Score=19.73 Aligned_cols=46 Identities=7% Similarity=0.138 Sum_probs=29.8
Q ss_pred HHHHHhcCeEEEEcccCCCCCcHHHHHHHHhhcCCCC-cCCCCeEEEEee
Q 035766 6 YNTFLEFICFHLLTDLFSSFVQGPLKNAIDWASRPPN-VWADKAAAIVSA 54 (128)
Q Consensus 6 ~~~i~~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~~-~~~~Kp~~~v~~ 54 (128)
...++.||++|++-..-+ +..+.++.+|+..... .-.+.|+.+++.
T Consensus 69 ~~~~~~~~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iiiv~n 115 (166)
T cd04122 69 RSYYRGAAGALMVYDITR---RSTYNHLSSWLTDARNLTNPNTVIFLIGN 115 (166)
T ss_pred HHHhcCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 345678999999955444 6778888888752101 123567777775
No 340
>PRK07586 hypothetical protein; Validated
Probab=20.14 E-value=2e+02 Score=24.04 Aligned_cols=46 Identities=7% Similarity=0.053 Sum_probs=33.4
Q ss_pred cHHHHHHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 27 QGPLKNAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 27 ~~~lKn~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
+..++.+++.+.. ..||+.++|.+... ..+.+.|+.+...+|+.++
T Consensus 184 ~~~v~~~~~~L~~-----A~rPvi~~G~g~~~--~~a~~~l~~lae~l~~pV~ 229 (514)
T PRK07586 184 PAAVEAAAAALRS-----GEPTVLLLGGRALR--ERGLAAAARIAAATGARLL 229 (514)
T ss_pred HHHHHHHHHHHHh-----cCCCEEEeCCcccc--hhHHHHHHHHHHHHCCCEE
Confidence 5668888888864 35899999876322 2456678888888888776
No 341
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=20.13 E-value=5e+02 Score=21.37 Aligned_cols=65 Identities=6% Similarity=-0.138 Sum_probs=39.2
Q ss_pred hcCeEEEEcccCCCCCcHHHHHHHHhhcCCC--CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 11 EFICFHLLTDLFSSFVQGPLKNAIDWASRPP--NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~--~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
....+.+-||-|.++.+....+++..+...- ..-..+.+.+++.-. .+. ...++.+|..+|..+.
T Consensus 129 ~~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~-~~d---~~el~~lL~~~Gi~v~ 195 (427)
T PRK02842 129 GVPVLNYSGSGLETTFTQGEDAVLAALVPFCPEAPADHPSLVLVGSLA-DVV---EDQLTLEFKKLGIGVV 195 (427)
T ss_pred CCeEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCcEEEEEeCC-cch---HHHHHHHHHHcCCeeE
Confidence 3456777799999885555444444443110 122345566776542 122 3679999999999864
No 342
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=20.03 E-value=3.9e+02 Score=22.01 Aligned_cols=65 Identities=9% Similarity=0.124 Sum_probs=41.3
Q ss_pred HhcCeEEEEcccCCCCCcHH-HH----HHHHhhcCCCCcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceeecc
Q 035766 10 LEFICFHLLTDLFSSFVQGP-LK----NAIDWASRPPNVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFVNK 81 (128)
Q Consensus 10 ~~AD~ii~~tPeYn~~i~~~-lK----n~iD~l~~~~~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~~~ 81 (128)
.+.|.+|++=-.|+.+.|+. .+ .++..+.. .+.|+.++ .|.+.........+.++...|..++..
T Consensus 38 ~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-----~~~~v~~I--~GNHD~~~~l~~~~~~l~~~gi~vl~~ 107 (407)
T PRK10966 38 HQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-----TGCQLVVL--AGNHDSVATLNESRDLLAFLNTTVIAS 107 (407)
T ss_pred cCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHh-----cCCcEEEE--cCCCCChhhhhhHHHHHHHCCcEEEec
Confidence 45999999999999876643 22 33334431 13555444 367655444556677888888887743
No 343
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=20.02 E-value=4.2e+02 Score=21.49 Aligned_cols=65 Identities=8% Similarity=-0.085 Sum_probs=43.4
Q ss_pred hcCeEEEEcccCCCCCcHHHHHHHHhhcCCC--CcCCCCeEEEEeecCCCChHHHHHHHHHhhhhcCceee
Q 035766 11 EFICFHLLTDLFSSFVQGPLKNAIDWASRPP--NVWADKAAAIVSAAGGSGGARAQYHLRQIGVYLDLHFV 79 (128)
Q Consensus 11 ~AD~ii~~tPeYn~~i~~~lKn~iD~l~~~~--~~~~~Kp~~~v~~sg~~gg~~a~~~L~~~l~~~g~~~~ 79 (128)
....|.+-||-|.++.+....++++.+.... ..-..+.+.++|.-. .+. ...++.+|+.+|..++
T Consensus 118 ~~pvi~v~t~gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VnliG~~~-~~d---~~el~~lL~~~Gi~v~ 184 (396)
T cd01979 118 GVPILVASASGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVGSLP-DIV---EDQLRRELEQLGIPVV 184 (396)
T ss_pred CCcEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCceEEEEeCC-cch---HHHHHHHHHHcCCeEE
Confidence 4678889999999887766666666664211 122345566776542 122 5779999999999875
Done!