BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035767
         (418 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W7E|A Chain A, Nmr Ensemble Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
 pdb|1W7D|A Chain A, Nmr Structure Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
          Length = 137

 Score = 34.7 bits (78), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 16/136 (11%)

Query: 192 GCKTFASLLVSSGVIKTFESAISKG-LTVFAPSDEAFKA---AGVPDLTKLTNAE-VVSL 246
           G  +F +LL ++      ++    G  TVFAP+D AF A     V DL K  N E +  +
Sbjct: 11  GAGSFTTLLTAAEAAGLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEI 70

Query: 247 LQYHAANGYNPVGTLKTTKGSISTLATNGAGKFDLTVTTAGDSVTLHTGVDSSRLADTVL 306
           L YH   G   V +   T+G  +     GA    LTVT  G        V+   ++   +
Sbjct: 71  LTYHVVPGE--VMSSDLTEGMTAETVEGGA----LTVTLEGGPK-----VNGVSISQPDV 119

Query: 307 DSTPLAIFTVDNVLLP 322
           D++   I  +D VL+P
Sbjct: 120 DASNGVIHVIDGVLMP 135


>pdb|4GLX|A Chain A, Dna Ligase A In Complex With Inhibitor
          Length = 586

 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 173 LTAPAPSADVNITALLEKAGCKTFASLLVSSGVIKTFESAISKGLTVFAPSDEAFKAAGV 232
           L    P +  N+   LEKA   TFA  L + G I+    A + GL  +  + EA +AA +
Sbjct: 485 LERMGPKSAQNVVNALEKAKETTFARFLYALG-IREVGEATAAGLAAYFGTLEALEAASI 543

Query: 233 PDLTKLTNAEVVSLLQYH 250
            +L K+ +  +V     H
Sbjct: 544 EELQKVPDVGIVVASHVH 561


>pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna
           Ligase Bound To Nicked Dna-Adenylate
          Length = 671

 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 173 LTAPAPSADVNITALLEKAGCKTFASLLVSSGVIKTFESAISKGLTVFAPSDEAFKAAGV 232
           L    P +  N+   LEKA   TFA  L + G I+    A + GL  +  + EA +AA +
Sbjct: 485 LERMGPKSAQNVVNALEKAKETTFARFLYALG-IREVGEATAAGLAAYFGTLEALEAASI 543

Query: 233 PDLTKLTNAEVVSLLQYH 250
            +L K+ +  +V     H
Sbjct: 544 EELQKVPDVGIVVASHVH 561


>pdb|1X3B|A Chain A, Solution Structure Of The Fas1 Domain Of Human
           Transforming Growth Factor-Beta Induced Protein Ig-H3
          Length = 146

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)

Query: 218 TVFAPSDEAFKAAGVPDLTKLTN--AEVVSLLQYH 250
           TVFAP++EAF+A    + ++L     E+ ++L+YH
Sbjct: 44  TVFAPTNEAFRALPPRERSRLLGDAKELANILKYH 78


>pdb|2VXP|A Chain A, The Fourth Fas1 Domain Structure Of Human Bigh3
 pdb|2VXP|B Chain B, The Fourth Fas1 Domain Structure Of Human Bigh3
          Length = 132

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)

Query: 218 TVFAPSDEAFKAAGVPDLTKLTN--AEVVSLLQYH 250
           TVFAP++EAF+A    + ++L     E+ ++L+YH
Sbjct: 37  TVFAPTNEAFRALPPRERSRLLGDAKELANILKYH 71


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,958,373
Number of Sequences: 62578
Number of extensions: 359498
Number of successful extensions: 702
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 10
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)