Query 035767
Match_columns 418
No_of_seqs 230 out of 1790
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1437 Fasciclin and related 99.9 4.5E-22 9.7E-27 210.4 16.5 266 19-328 372-647 (682)
2 COG2335 Secreted and surface p 99.9 1.3E-22 2.8E-27 182.9 8.4 132 183-326 49-185 (187)
3 COG2335 Secreted and surface p 99.8 1.4E-19 3.1E-24 163.2 9.1 128 20-171 47-183 (187)
4 PF02469 Fasciclin: Fasciclin 99.8 7.7E-20 1.7E-24 157.4 6.6 122 193-322 3-128 (128)
5 smart00554 FAS1 Four repeated 99.8 2.7E-19 5.9E-24 147.6 5.0 96 218-323 1-99 (99)
6 PF02469 Fasciclin: Fasciclin 99.7 9.3E-18 2E-22 144.4 7.3 119 31-169 1-128 (128)
7 KOG1437 Fasciclin and related 99.6 2.9E-15 6.2E-20 159.1 10.6 151 153-322 353-507 (682)
8 smart00554 FAS1 Four repeated 99.5 4.5E-14 9.8E-19 116.3 6.2 91 56-170 1-99 (99)
9 PHA01732 proline-rich protein 83.5 1.7 3.8E-05 34.7 3.9 14 326-339 4-17 (94)
10 KOG1924 RhoA GTPase effector D 72.5 13 0.00028 41.3 7.7 7 163-169 312-318 (1102)
11 PF07462 MSP1_C: Merozoite sur 55.3 35 0.00076 36.5 6.9 6 320-325 257-262 (574)
12 KOG0559 Dihydrolipoamide succi 38.2 1.5E+02 0.0034 30.3 8.1 11 238-248 84-94 (457)
13 PHA03247 large tegument protei 36.7 1.6E+02 0.0034 37.8 9.1 8 57-64 2276-2283(3151)
14 PRK14950 DNA polymerase III su 36.5 71 0.0015 34.8 6.0 6 244-249 291-296 (585)
15 PHA01929 putative scaffolding 34.1 1.2E+02 0.0025 29.6 6.2 6 321-326 8-13 (306)
16 PRK14954 DNA polymerase III su 33.0 1.8E+02 0.0038 32.2 8.3 8 397-404 459-466 (620)
17 PRK15348 type III secretion sy 26.0 42 0.00092 32.5 1.9 45 22-67 22-67 (249)
18 PRK15324 type III secretion sy 24.8 42 0.00092 32.6 1.6 63 3-67 4-68 (252)
19 PHA03264 envelope glycoprotein 24.7 5.7E+02 0.012 26.4 9.5 8 370-377 329-336 (416)
20 PRK10780 periplasmic chaperone 22.7 91 0.002 27.9 3.3 42 1-42 1-50 (165)
21 PF04584 Pox_A28: Poxvirus A28 22.1 29 0.00062 30.4 -0.1 71 1-71 1-72 (140)
22 PHA03269 envelope glycoprotein 20.2 2.6E+02 0.0057 29.8 6.3 6 358-363 79-84 (566)
No 1
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.88 E-value=4.5e-22 Score=210.37 Aligned_cols=266 Identities=17% Similarity=0.219 Sum_probs=189.8
Q ss_pred CcccHHHHHhcCCCcHHHHHHHhhcchHHHHccCCcEEEEEcCChhhhhccCCCCHHHHHHHHhhccccCcCCccccccc
Q 035767 19 SAHNITDILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAKHPLSVIKSALSLLVLLDYYDPQKLHQI 98 (418)
Q Consensus 19 ~a~ni~~iL~~~~~~S~f~~~L~~t~L~~~L~~~~~~TvfAPtN~Af~~l~~~~~~~~l~~iL~yHil~g~~~~~~L~~l 98 (418)
+..+++++..++ +-|++.+++.+-++.+.|...+.+|+|+|.|.+|+++........++++|.|||++.+...+++
T Consensus 372 ~~~~l~~La~e~-~~st~~rlv~elgll~~L~~n~e~t~~lp~n~~fd~~~~~~~r~l~~qIL~~HII~~~~~~~~~--- 447 (682)
T KOG1437|consen 372 SLKNLMSLARED-EISTSMRLVAELGLLTALAPNDEATLLLPTNNLFDDLTPLESRRLAEQILYNHIIPEYLTSSSM--- 447 (682)
T ss_pred hHHHHHHHHhcc-cccHHHHHHHhccceEEEcCCCceEEeeehhhhccCCChhhhHHHHHHHHHHhCcchhhhhhhh---
Confidence 356788888874 8899999999999988888777799999999999997754334558999999999999998877
Q ss_pred cCCceeeeccccccCCCCCCCceEEEEEcC---CCeEEEeeCCCCCccceEEeeeccccccccceee-ecccccCCCcCC
Q 035767 99 SKGTTLSTTLYQTTGNAPGNLGFVNITDLQ---GGKVGFGSAASGSKLDSTYTKSVKQIPYNVSVLE-ISSPIIAPGILT 174 (418)
Q Consensus 99 ~~g~~~~~Tl~~~~g~~~~~~g~v~it~~~---~g~v~~~~~~~g~~~~a~vv~~v~di~~~ngVih-Id~vL~pp~~~~ 174 (418)
.+|.+.++|+.. ..++...... .+...+.. |+ . +.|.+. |+...||++| ||+|+.| .
T Consensus 448 y~~~~~v~t~g~--------~~l~~fv~r~~~s~~~t~i~~---~~-~-~~Ii~a--Di~~~nGvvH~id~vl~p-~--- 508 (682)
T KOG1437|consen 448 YNGQTTVRTLGK--------NKLLYFVYRHSVSANVTDILI---GN-E-ACIIEA--DISVKNGVVHIIDRVLDP-V--- 508 (682)
T ss_pred hcccceeeccCC--------eEEEEEEecccccccceeeec---cc-e-eeEEec--ccceecCceEEeeEEcCc-c---
Confidence 444445666631 1122222111 11111111 12 4 778888 9999999999 9999985 4
Q ss_pred CCCCCCcccHHHHHhhhh-HHHHHHHHHhcChHHHhhccCCCCeEEEecCcHHHhccCCCcccCCCHHHHHHHhhccccC
Q 035767 175 APAPSADVNITALLEKAG-CKTFASLLVSSGVIKTFESAISKGLTVFAPSDEAFKAAGVPDLTKLTNAEVVSLLQYHAAN 253 (418)
Q Consensus 175 p~~~p~~~~l~~~L~~~~-~S~f~~lL~~agl~~~l~~~~~~~~TvFAPtn~AF~~l~~~~l~~L~~~~l~~lL~yHiv~ 253 (418)
++.+.|+..+ +|.|.++++..++.+++... +.+|+|+|||+||.+.......-.....++.+++||+++
T Consensus 509 --------~l~~~l~~d~r~s~~~~~le~~~l~e~l~~~--~~~t~fvPt~ka~~~~~~~~~~~~~~~~l~~~l~yH~v~ 578 (682)
T KOG1437|consen 509 --------SLMEDLKTDGRISGTVQGLEGVLLPEELTPE--GNYTLFVPTNKAWQKSTKDEKSLFHKKALQDFLKYHLVP 578 (682)
T ss_pred --------cHHHHHhhccchhhhHHhhhhcCChhhhccC--CceEEEeecccccccCCcchhhcchHHHHHHHHHhcccc
Confidence 7888998888 99999999999999999554 679999999999999854322211346799999999999
Q ss_pred CCcccccccccCCcceeeeccCCCceEEEEEecCCeEEEEe-----CCcceEEeeccccCCCeEEEEeCccccCCcCCCC
Q 035767 254 GYNPVGTLKTTKGSISTLATNGAGKFDLTVTTAGDSVTLHT-----GVDSSRLADTVLDSTPLAIFTVDNVLLPTELFGK 328 (418)
Q Consensus 254 ~~~s~~~L~~~~g~~~Tla~~~~~~~~l~v~~~g~~V~l~~-----gv~~a~V~~~~i~~~NGVVH~ID~VL~P~~l~~~ 328 (418)
+.... ++. +.+.... .+.+...++.+.+.. .++..+++..++..+|||+|+||+||.|+.+...
T Consensus 579 ~~~~l-s~~--~~~~v~~--------~~k~s~~~~~~~~~~~~~~~~vn~e~~~~~~i~~~n~~~h~i~~vl~p~~l~~~ 647 (682)
T KOG1437|consen 579 GQSRL-SLG--SSPYVMI--------QVKLSLRGDHLFFSLVNPRGDVNKERLVGIDIMGTNGVVHVIDLVLKPPDLPFL 647 (682)
T ss_pred ceeee-ecc--cccceee--------eeeEEEecccEEeeeeccccceeeeeeeccceeeecceeEEEEEEcccCcchhh
Confidence 86641 111 1111111 011222234443322 1466778888999999999999999999866433
No 2
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=1.3e-22 Score=182.87 Aligned_cols=132 Identities=26% Similarity=0.434 Sum_probs=108.8
Q ss_pred cHHHHHhhhh-HHHHHHHHHhcChHHHhhccCCCCeEEEecCcHHHhccCCCcccCC----CHHHHHHHhhccccCCCcc
Q 035767 183 NITALLEKAG-CKTFASLLVSSGVIKTFESAISKGLTVFAPSDEAFKAAGVPDLTKL----TNAEVVSLLQYHAANGYNP 257 (418)
Q Consensus 183 ~l~~~L~~~~-~S~f~~lL~~agl~~~l~~~~~~~~TvFAPtn~AF~~l~~~~l~~L----~~~~l~~lL~yHiv~~~~s 257 (418)
+|.+.....+ |++|..+++.++|.+.|++. +.||||||||+||.+++...+..| +...|.++|.||+++|.+.
T Consensus 49 ~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~~--gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~~ 126 (187)
T COG2335 49 DIVESAANNPSFTTLVAALKAAGLVDTLNET--GPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKIT 126 (187)
T ss_pred HHHHHHccCcchHHHHHHHHhhhhHHHhcCC--CCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCccc
Confidence 4555544555 99999999999999999998 779999999999999987776655 3568999999999999998
Q ss_pred cccccccCCcceeeeccCCCceEEEEEecCCeEEEEeCCcceEEeeccccCCCeEEEEeCccccCCcCC
Q 035767 258 VGTLKTTKGSISTLATNGAGKFDLTVTTAGDSVTLHTGVDSSRLADTVLDSTPLAIFTVDNVLLPTELF 326 (418)
Q Consensus 258 ~~~L~~~~g~~~Tla~~~~~~~~l~v~~~g~~V~l~~gv~~a~V~~~~i~~~NGVVH~ID~VL~P~~l~ 326 (418)
..+++. .+.+.|+.+. .+++...++.++ ++.++|+..|+..+|||||+||+||+|++..
T Consensus 127 ~~~l~~-~~~v~t~~G~-----~~~i~~~~~~~~----Vn~a~v~~~di~a~NgvIhvID~Vl~Pp~~~ 185 (187)
T COG2335 127 AADLKS-SGSVKTVQGA-----DLKIKVTGGGVY----VNDATVTIADINASNGVIHVIDKVLIPPMDL 185 (187)
T ss_pred HHHhhc-cccceeecCc-----eEEEEEcCCcEE----EeeeEEEeccEeccCcEEEEEeeeccCCCcc
Confidence 888874 3456777542 455555566688 5899999999999999999999999999753
No 3
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=1.4e-19 Score=163.25 Aligned_cols=128 Identities=21% Similarity=0.252 Sum_probs=104.7
Q ss_pred cccHHHHHhcCCCcHHHHHHHhhcchHHHHccCCcEEEEEcCChhhhhccCCC--------CHHHHHHHHhhccccCcCC
Q 035767 20 AHNITDILKDFPEYSQFNSYLTQTKLADEINSRQTITVLVLPNGAMSDLTAKH--------PLSVIKSALSLLVLLDYYD 91 (418)
Q Consensus 20 a~ni~~iL~~~~~~S~f~~~L~~t~L~~~L~~~~~~TvfAPtN~Af~~l~~~~--------~~~~l~~iL~yHil~g~~~ 91 (418)
.++|.+...++++|++|..+++..+|.++|++.++||||||+|+||.++.... +...|+.+|.|||+.|.+.
T Consensus 47 ~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~~ 126 (187)
T COG2335 47 RADIVESAANNPSFTTLVAALKAAGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKIT 126 (187)
T ss_pred hhHHHHHHccCcchHHHHHHHHhhhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCccc
Confidence 36778877788999999999999999999999999999999999999997632 6889999999999999999
Q ss_pred ccccccccCCceeeeccccccCCCCCCCceEEEEEcCCCeEEEeeCCCCCccceEEeeeccccccccceee-ecccccCC
Q 035767 92 PQKLHQISKGTTLSTTLYQTTGNAPGNLGFVNITDLQGGKVGFGSAASGSKLDSTYTKSVKQIPYNVSVLE-ISSPIIAP 170 (418)
Q Consensus 92 ~~~L~~l~~g~~~~~Tl~~~~g~~~~~~g~v~it~~~~g~v~~~~~~~g~~~~a~vv~~v~di~~~ngVih-Id~vL~pp 170 (418)
.+++..... +.|+ .+..++|....+ +++++ +++++.. |+.++||||| ||+||.||
T Consensus 127 ~~~l~~~~~----v~t~---------~G~~~~i~~~~~-~~~Vn--------~a~v~~~--di~a~NgvIhvID~Vl~Pp 182 (187)
T COG2335 127 AADLKSSGS----VKTV---------QGADLKIKVTGG-GVYVN--------DATVTIA--DINASNGVIHVIDKVLIPP 182 (187)
T ss_pred HHHhhcccc----ceee---------cCceEEEEEcCC-cEEEe--------eeEEEec--cEeccCcEEEEEeeeccCC
Confidence 998843211 3333 234577776544 47775 3567777 9999999999 99999998
Q ss_pred C
Q 035767 171 G 171 (418)
Q Consensus 171 ~ 171 (418)
.
T Consensus 183 ~ 183 (187)
T COG2335 183 M 183 (187)
T ss_pred C
Confidence 6
No 4
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.79 E-value=7.7e-20 Score=157.36 Aligned_cols=122 Identities=26% Similarity=0.471 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcChHHHhh-ccCCCCeEEEecCcHHHhccCCCcccCC--CHHHHHHHhhccccCCCcccccccccCCcce
Q 035767 193 CKTFASLLVSSGVIKTFE-SAISKGLTVFAPSDEAFKAAGVPDLTKL--TNAEVVSLLQYHAANGYNPVGTLKTTKGSIS 269 (418)
Q Consensus 193 ~S~f~~lL~~agl~~~l~-~~~~~~~TvFAPtn~AF~~l~~~~l~~L--~~~~l~~lL~yHiv~~~~s~~~L~~~~g~~~ 269 (418)
||.|.++|+++|+.+.|+ .. +.+|||||+|+||++++....+.+ ..+.++++|+||++++.++.++|......++
T Consensus 3 ~s~f~~~l~~~~l~~~l~~~~--~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~~~~~ 80 (128)
T PF02469_consen 3 LSTFSRLLEQAGLADLLNDSD--GNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGKQTLE 80 (128)
T ss_dssp THHHHHHHHHTTCHHHHGCSS--SSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCHHEEEE
T ss_pred HHHHHHHHHHcCCHHHHhcCC--CCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhccccccce
Confidence 899999999999999995 43 679999999999998842222322 5678999999999999998888873212355
Q ss_pred eeeccCCCceEEEEEecCCeEEEEeCCcc-eEEeeccccCCCeEEEEeCccccC
Q 035767 270 TLATNGAGKFDLTVTTAGDSVTLHTGVDS-SRLADTVLDSTPLAIFTVDNVLLP 322 (418)
Q Consensus 270 Tla~~~~~~~~l~v~~~g~~V~l~~gv~~-a~V~~~~i~~~NGVVH~ID~VL~P 322 (418)
|. ..|..+.++....++.++ +++ ++|++.++.+.||+||+||+||+|
T Consensus 81 t~--~~g~~~~v~~~~~~~~~~----v~~~a~i~~~~~~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 81 TL--LNGQPLRVSSSPSNGTIY----VNGKARIVKSDIEASNGVIHIIDDVLIP 128 (128)
T ss_dssp BS--STTCEEEEEEEGGTTEEE----ECCEEEESEEEEEESSEEEEEESS-TSS
T ss_pred ec--cCCCEEEEEEEecCCceE----ecCceEEEeCCEEeCCEEEEEECceECc
Confidence 51 223445555443367888 466 999999999999999999999998
No 5
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.77 E-value=2.7e-19 Score=147.60 Aligned_cols=96 Identities=36% Similarity=0.554 Sum_probs=77.4
Q ss_pred EEEecCcHHHhccCCCcccCCCHH-HHHHHhhccccCCCcccccccccCCcceeeeccCCCceEEEEEecC--CeEEEEe
Q 035767 218 TVFAPSDEAFKAAGVPDLTKLTNA-EVVSLLQYHAANGYNPVGTLKTTKGSISTLATNGAGKFDLTVTTAG--DSVTLHT 294 (418)
Q Consensus 218 TvFAPtn~AF~~l~~~~l~~L~~~-~l~~lL~yHiv~~~~s~~~L~~~~g~~~Tla~~~~~~~~l~v~~~g--~~V~l~~ 294 (418)
|||||+|+||++++...++.+..+ .++++|+|||++++++..+|.. ...++|+.+ . .+.+.+.+ +.++
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~-~~~~~Tl~g---~--~l~v~~~~~~~~i~--- 71 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN-GGTLPTLAG---S--KLRVTRSGDSGTVT--- 71 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc-CCccccCCC---C--EEEEEEeCCCCeEE---
Confidence 899999999999965444555434 8999999999999998888873 335778763 2 45666555 6777
Q ss_pred CCcceEEeeccccCCCeEEEEeCccccCC
Q 035767 295 GVDSSRLADTVLDSTPLAIFTVDNVLLPT 323 (418)
Q Consensus 295 gv~~a~V~~~~i~~~NGVVH~ID~VL~P~ 323 (418)
+++++|+..|+.++||+||+||+||+|+
T Consensus 72 -in~~~v~~~di~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 72 -VNGARIVEADIAATNGVVHVIDRVLLPP 99 (99)
T ss_pred -EcceEEEECCEecCCeEEEEECceeCCC
Confidence 5789999999999999999999999996
No 6
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.72 E-value=9.3e-18 Score=144.37 Aligned_cols=119 Identities=24% Similarity=0.316 Sum_probs=89.3
Q ss_pred CCcHHHHHHHhhcchHHHH-ccCCcEEEEEcCChhhhhccCCC------CHHHHHHHHhhccccCcCCccccccccCCce
Q 035767 31 PEYSQFNSYLTQTKLADEI-NSRQTITVLVLPNGAMSDLTAKH------PLSVIKSALSLLVLLDYYDPQKLHQISKGTT 103 (418)
Q Consensus 31 ~~~S~f~~~L~~t~L~~~L-~~~~~~TvfAPtN~Af~~l~~~~------~~~~l~~iL~yHil~g~~~~~~L~~l~~g~~ 103 (418)
|+||+|.++|+++++.+.| +..+.+|||||+|+||+++.... +.+.++++|+|||+++.+...+| ..+.+
T Consensus 1 ~~~s~f~~~l~~~~l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l---~~~~~ 77 (128)
T PF02469_consen 1 PDLSTFSRLLEQAGLADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDL---RNGKQ 77 (128)
T ss_dssp -TTHHHHHHHHHTTCHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHH---HCHHE
T ss_pred CCHHHHHHHHHHcCCHHHHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhh---ccccc
Confidence 6899999999999999999 67799999999999999884211 46889999999999999998887 44323
Q ss_pred eeeccccccCCCCCCCceEEEEEc-CCCeEEEeeCCCCCccceEEeeeccccccccceee-ecccccC
Q 035767 104 LSTTLYQTTGNAPGNLGFVNITDL-QGGKVGFGSAASGSKLDSTYTKSVKQIPYNVSVLE-ISSPIIA 169 (418)
Q Consensus 104 ~~~Tl~~~~g~~~~~~g~v~it~~-~~g~v~~~~~~~g~~~~a~vv~~v~di~~~ngVih-Id~vL~p 169 (418)
.++|.+ ++..+.++.. .++.+.|+. .++|++. |+.++||+|| ||+||.|
T Consensus 78 ~~~t~~--------~g~~~~v~~~~~~~~~~v~~-------~a~i~~~--~~~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 78 TLETLL--------NGQPLRVSSSPSNGTIYVNG-------KARIVKS--DIEASNGVIHIIDDVLIP 128 (128)
T ss_dssp EEEBSS--------TTCEEEEEEEGGTTEEEECC-------EEEESEE--EEEESSEEEEEESS-TSS
T ss_pred cceecc--------CCCEEEEEEEecCCceEecC-------ceEEEeC--CEEeCCEEEEEECceECc
Confidence 455532 2345666665 467788743 4678877 8999999999 9999985
No 7
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.60 E-value=2.9e-15 Score=159.05 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=113.5
Q ss_pred ccccccceee-ecccccCCCcCCCCCCCCcccHHHHHhhhhHHHHHHHHHhcChHHHhhccCCCCeEEEecCcHHHhccC
Q 035767 153 QIPYNVSVLE-ISSPIIAPGILTAPAPSADVNITALLEKAGCKTFASLLVSSGVIKTFESAISKGLTVFAPSDEAFKAAG 231 (418)
Q Consensus 153 di~~~ngVih-Id~vL~pp~~~~p~~~p~~~~l~~~L~~~~~S~f~~lL~~agl~~~l~~~~~~~~TvFAPtn~AF~~l~ 231 (418)
|...+||+|| ||.+|.|+. ..++.++..++.++++.+++.+-|+.+.|... +.+|+|+|+|.+|+.+.
T Consensus 353 d~i~~~~~lh~id~~l~p~~---------~~~l~~La~e~~~st~~rlv~elgll~~L~~n--~e~t~~lp~n~~fd~~~ 421 (682)
T KOG1437|consen 353 DFIHTNGLLHYIDYVLEPDS---------LKNLMSLAREDEISTSMRLVAELGLLTALAPN--DEATLLLPTNNLFDDLT 421 (682)
T ss_pred eeeccceEEEEcccccCCch---------HHHHHHHHhcccccHHHHHHHhccceEEEcCC--CceEEeeehhhhccCCC
Confidence 6666789999 999999763 25788888887899999999999999988765 45999999999999974
Q ss_pred CCcccCCCHHHHHHHhhccccCCCcccccccccCCcceeeeccCCCceEEEEEecCCeE---EEEeCCcceEEeeccccC
Q 035767 232 VPDLTKLTNAEVVSLLQYHAANGYNPVGTLKTTKGSISTLATNGAGKFDLTVTTAGDSV---TLHTGVDSSRLADTVLDS 308 (418)
Q Consensus 232 ~~~l~~L~~~~l~~lL~yHiv~~~~s~~~L~~~~g~~~Tla~~~~~~~~l~v~~~g~~V---~l~~gv~~a~V~~~~i~~ 308 (418)
. .+...-+++||+||||+.|.+...+...+..++|+. +.++..-+.+.-++. .+..|. .+.|+..|+..
T Consensus 422 ~----~~~r~l~~qIL~~HII~~~~~~~~~y~~~~~v~t~g---~~~l~~fv~r~~~s~~~t~i~~~~-~~~Ii~aDi~~ 493 (682)
T KOG1437|consen 422 P----LESRRLAEQILYNHIIPEYLTSSSMYNGQTTVRTLG---KNKLLYFVYRHSVSANVTDILIGN-EACIIEADISV 493 (682)
T ss_pred h----hhhHHHHHHHHHHhCcchhhhhhhhhcccceeeccC---CeEEEEEEecccccccceeeeccc-eeeEEecccce
Confidence 2 122334899999999999998877763222355553 334555555432221 222222 48999999999
Q ss_pred CCeEEEEeCccccC
Q 035767 309 TPLAIFTVDNVLLP 322 (418)
Q Consensus 309 ~NGVVH~ID~VL~P 322 (418)
+||+||.||+||.|
T Consensus 494 ~nGvvH~id~vl~p 507 (682)
T KOG1437|consen 494 KNGVVHIIDRVLDP 507 (682)
T ss_pred ecCceEEeeEEcCc
Confidence 99999999999999
No 8
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.48 E-value=4.5e-14 Score=116.31 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=69.7
Q ss_pred EEEEcCChhhhhccCCC------CHHHHHHHHhhccccCcCCccccccccCCceeeeccccccCCCCCCCceEEEEEcCC
Q 035767 56 TVLVLPNGAMSDLTAKH------PLSVIKSALSLLVLLDYYDPQKLHQISKGTTLSTTLYQTTGNAPGNLGFVNITDLQG 129 (418)
Q Consensus 56 TvfAPtN~Af~~l~~~~------~~~~l~~iL~yHil~g~~~~~~L~~l~~g~~~~~Tl~~~~g~~~~~~g~v~it~~~~ 129 (418)
|||||+|+||+++.... +. .++++|+|||++++++..+|. + ...++|+. +..+.++...+
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~-~l~~ll~~Hiv~~~~~~~~l~---~-~~~~~Tl~---------g~~l~v~~~~~ 66 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADP-KLKNLLLYHVVPGRLSSADLL---N-GGTLPTLA---------GSKLRVTRSGD 66 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCH-HHHHHHHhcEeCceEcHHHhc---c-CCccccCC---------CCEEEEEEeCC
Confidence 89999999999986521 23 899999999999999988883 3 23456653 23467766544
Q ss_pred -CeEEEeeCCCCCccceEEeeeccccccccceee-ecccccCC
Q 035767 130 -GKVGFGSAASGSKLDSTYTKSVKQIPYNVSVLE-ISSPIIAP 170 (418)
Q Consensus 130 -g~v~~~~~~~g~~~~a~vv~~v~di~~~ngVih-Id~vL~pp 170 (418)
+.+.++. +++++. |+.++||+|| ||+||.||
T Consensus 67 ~~~i~in~--------~~v~~~--di~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 67 SGTVTVNG--------ARIVEA--DIAATNGVVHVIDRVLLPP 99 (99)
T ss_pred CCeEEEcc--------eEEEEC--CEecCCeEEEEECceeCCC
Confidence 5666642 578888 9999999999 99999875
No 9
>PHA01732 proline-rich protein
Probab=83.50 E-value=1.7 Score=34.74 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCCCC
Q 035767 326 FGKAPSPAPAGEPV 339 (418)
Q Consensus 326 ~~~~~~~~p~p~~~ 339 (418)
|++.+.|.|+|+|.
T Consensus 4 fgAP~~p~ppPpPp 17 (94)
T PHA01732 4 FRAPKPPEPPAPLP 17 (94)
T ss_pred cCCCCCCCCCCCCC
Confidence 44444444444333
No 10
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=72.49 E-value=13 Score=41.31 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=2.8
Q ss_pred ecccccC
Q 035767 163 ISSPIIA 169 (418)
Q Consensus 163 Id~vL~p 169 (418)
|+.+..+
T Consensus 312 INal~t~ 318 (1102)
T KOG1924|consen 312 INALVTS 318 (1102)
T ss_pred HHHhcCC
Confidence 4444443
No 11
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=55.29 E-value=35 Score=36.48 Aligned_cols=6 Identities=50% Similarity=0.694 Sum_probs=3.4
Q ss_pred ccCCcC
Q 035767 320 LLPTEL 325 (418)
Q Consensus 320 L~P~~l 325 (418)
|+|..-
T Consensus 257 LLPKvt 262 (574)
T PF07462_consen 257 LLPKVT 262 (574)
T ss_pred hCCCCC
Confidence 666554
No 12
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=38.23 E-value=1.5e+02 Score=30.29 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=4.6
Q ss_pred CCHHHHHHHhh
Q 035767 238 LTNAEVVSLLQ 248 (418)
Q Consensus 238 L~~~~l~~lL~ 248 (418)
+++..|+++|+
T Consensus 84 iteG~l~~~lK 94 (457)
T KOG0559|consen 84 ITEGDLAQWLK 94 (457)
T ss_pred cccchHHHHhh
Confidence 33444444443
No 13
>PHA03247 large tegument protein UL36; Provisional
Probab=36.70 E-value=1.6e+02 Score=37.79 Aligned_cols=8 Identities=0% Similarity=-0.135 Sum_probs=3.1
Q ss_pred EEEcCChh
Q 035767 57 VLVLPNGA 64 (418)
Q Consensus 57 vfAPtN~A 64 (418)
+|.|+-..
T Consensus 2276 LY~pTG~~ 2283 (3151)
T PHA03247 2276 LYRPSGQR 2283 (3151)
T ss_pred cccccCce
Confidence 33333333
No 14
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.49 E-value=71 Score=34.79 Aligned_cols=6 Identities=0% Similarity=0.069 Sum_probs=2.2
Q ss_pred HHHhhc
Q 035767 244 VSLLQY 249 (418)
Q Consensus 244 ~~lL~y 249 (418)
+.++.+
T Consensus 291 R~Ll~l 296 (585)
T PRK14950 291 RQVMLL 296 (585)
T ss_pred HHHHHH
Confidence 333333
No 15
>PHA01929 putative scaffolding protein
Probab=34.08 E-value=1.2e+02 Score=29.65 Aligned_cols=6 Identities=50% Similarity=0.700 Sum_probs=2.7
Q ss_pred cCCcCC
Q 035767 321 LPTELF 326 (418)
Q Consensus 321 ~P~~l~ 326 (418)
+|+.+-
T Consensus 8 lppgla 13 (306)
T PHA01929 8 LPPGLA 13 (306)
T ss_pred CCCCcc
Confidence 344443
No 16
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.02 E-value=1.8e+02 Score=32.16 Aligned_cols=8 Identities=13% Similarity=-0.080 Sum_probs=4.0
Q ss_pred cccchhHH
Q 035767 397 FHVNAPAL 404 (418)
Q Consensus 397 ~~~~~~~~ 404 (418)
+++..+.|
T Consensus 459 ~~~~~~~~ 466 (620)
T PRK14954 459 PGVDLGSW 466 (620)
T ss_pred cccccHhh
Confidence 34555555
No 17
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=26.01 E-value=42 Score=32.51 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=31.2
Q ss_pred cHHHHHhcCCCcHHHHHHHhhcchHHHHc-cCCcEEEEEcCChhhhh
Q 035767 22 NITDILKDFPEYSQFNSYLTQTKLADEIN-SRQTITVLVLPNGAMSD 67 (418)
Q Consensus 22 ni~~iL~~~~~~S~f~~~L~~t~L~~~L~-~~~~~TvfAPtN~Af~~ 67 (418)
.++.=|.. .+-......|++.|+..+.. +.+..||.+|.++.-+.
T Consensus 22 ~LysgL~~-~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~~~~~~A 67 (249)
T PRK15348 22 DLYRSLPE-DEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINA 67 (249)
T ss_pred HHHcCCCH-HHHHHHHHHHHHcCCCceEeeCCCCeEEEecHHHHHHH
Confidence 35554544 46777888888888776553 45679999999886553
No 18
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=24.81 E-value=42 Score=32.58 Aligned_cols=63 Identities=6% Similarity=0.033 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHhhccCcccHHHHHhcCCCcHHHHHHHhhcchHHHHccC--CcEEEEEcCChhhhh
Q 035767 3 TVFLFLTLSLLAITISSAHNITDILKDFPEYSQFNSYLTQTKLADEINSR--QTITVLVLPNGAMSD 67 (418)
Q Consensus 3 ~~~~~~~~l~~~~~~a~a~ni~~iL~~~~~~S~f~~~L~~t~L~~~L~~~--~~~TvfAPtN~Af~~ 67 (418)
+.++.+.+++++..|-. ..|+.=|.. .+-.+..+.|++.|...++.+. +.+||.+|.++.-..
T Consensus 4 ~~~~~~~~~~lLs~c~~-~~Lys~L~~-~dAneIv~~L~~~gI~y~~~~~gk~G~tI~V~~~d~~~A 68 (252)
T PRK15324 4 RYLYTFLLVMTLAGCKD-KDLLKGLDQ-EQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68 (252)
T ss_pred HHHHHHHHHHHHcCCCe-ehhhcCCCH-HHHHHHHHHHHHCCCCeEeccCCCCceEEEEcHHHHHHH
Confidence 44444444444333432 256666665 4777888888888887666543 368999998876554
No 19
>PHA03264 envelope glycoprotein D; Provisional
Probab=24.69 E-value=5.7e+02 Score=26.41 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=3.9
Q ss_pred CCCCCCCC
Q 035767 370 APLTETPG 377 (418)
Q Consensus 370 ~~~~~~~~ 377 (418)
.++++-|+
T Consensus 329 ~~~~~~p~ 336 (416)
T PHA03264 329 APDADRPE 336 (416)
T ss_pred CCCcCCCC
Confidence 34444555
No 20
>PRK10780 periplasmic chaperone; Provisional
Probab=22.68 E-value=91 Score=27.93 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=27.9
Q ss_pred CchhHHHHHHHHHHhhc--c-Cc-----ccHHHHHhcCCCcHHHHHHHhh
Q 035767 1 MSTVFLFLTLSLLAITI--S-SA-----HNITDILKDFPEYSQFNSYLTQ 42 (418)
Q Consensus 1 ~~~~~~~~~~l~~~~~~--a-~a-----~ni~~iL~~~~~~S~f~~~L~~ 42 (418)
|+.++++++++++++.+ + ++ -|+-.+|.++|++.....-|+.
T Consensus 1 Mkk~~~~~~l~l~~~~~~~a~a~~KIg~Vd~q~il~~~p~~k~~~~~le~ 50 (165)
T PRK10780 1 MKKWLLAAGLGLALATSAGAQAADKIAIVNMGSIFQQVPQRTGVSKQLEN 50 (165)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCeEEeeHHHHHHHCHHHHHHHHHHHH
Confidence 78888766554333222 1 11 4788999999998887777764
No 21
>PF04584 Pox_A28: Poxvirus A28 family; InterPro: IPR007664 The poxvirus A28 protein is expressed at late times during the virus replication cycle and is a membrane component of the intracellular mature virion. Repression of A28 inhibits cell-to-cell spread, suggesting that all poxviruses use a common A28-dependent mechanism of cell penetration []. An N-terminal hydrophobic sequence, present in all poxvirus A28 orthologues, anchors the protein in the virion surface membrane so that most of it is exposed to the cytoplasm [].; GO: 0016032 viral reproduction, 0019031 viral envelope
Probab=22.10 E-value=29 Score=30.39 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=42.6
Q ss_pred CchhHHHHHHHHHHhhccCcccHHHHHhcCCCcHHHHHHHhhcchHHHHcc-CCcEEEEEcCChhhhhccCC
Q 035767 1 MSTVFLFLTLSLLAITISSAHNITDILKDFPEYSQFNSYLTQTKLADEINS-RQTITVLVLPNGAMSDLTAK 71 (418)
Q Consensus 1 ~~~~~~~~~~l~~~~~~a~a~ni~~iL~~~~~~S~f~~~L~~t~L~~~L~~-~~~~TvfAPtN~Af~~l~~~ 71 (418)
|..+.+.+.+++-.+.+-----++.+-+++.+--+|++.-..-.+...+++ .-.-|||=|+|+++.--..|
T Consensus 1 Mn~vsvf~ii~at~aic~i~fQ~y~iYeNYdnI~EFN~~~~~LEYskt~g~~~iDr~V~DPND~~~DvkqKW 72 (140)
T PF04584_consen 1 MNAVSVFFIILATAAICFILFQLYYIYENYDNIKEFNDAHSALEYSKTIGGNYIDRRVFDPNDEVYDVKQKW 72 (140)
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhccceeEeecCCCccccceeeCCCCcccChhhce
Confidence 455544444443333333333445555666666677766555455556665 34679999999998866655
No 22
>PHA03269 envelope glycoprotein C; Provisional
Probab=20.19 E-value=2.6e+02 Score=29.82 Aligned_cols=6 Identities=33% Similarity=0.362 Sum_probs=2.3
Q ss_pred CCCCCC
Q 035767 358 VEAPSP 363 (418)
Q Consensus 358 ~~~~~~ 363 (418)
.++++|
T Consensus 79 ~~~~dp 84 (566)
T PHA03269 79 SEKFDP 84 (566)
T ss_pred hccCCC
Confidence 333343
Done!