BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035770
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGC 118
Y +SIG+ YL+ DTGS DTW+ KGC
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGC 51
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWL-----QCKGCTSCFPINGGSFPVKESKTYRGLA 141
Y +K+S+GS + +++DTGS D W+ QC C + G+F S +Y+ L
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC--KSSGTFTPSSSSSYKNLG 71
Query: 142 CDHPLCVPKLCVIKEGSGTKGVLSSESFTFPRDKNTSLTFANVT 185
+ +GS ++G ++ T T A+VT
Sbjct: 72 AAFTIR------YGDGSTSQGTWGKDTVTINGVSITGQQIADVT 109
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESK---TYRGLACD 143
Y I+IGS + ++VDTGS D W+ T P G S + K T +
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFCKGKGIYTPKSSTTS 73
Query: 144 HPLCVPKLCVIKEGSGTKGVLSSESFTFPRDKNTSLTFANVT--------FGCGY 190
L P +GS ++G L ++ F T FA++T G GY
Sbjct: 74 QNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITKTSIPQGILGIGY 128
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCT 119
Y +SIG+ L+ DTGS DTW+ KGCT
Sbjct: 20 YAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCT 52
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPL 146
Y KI IG+ +V DTGS D W+ C S N F ++S T+R L PL
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLG--KPL 70
Query: 147 CV 148
+
Sbjct: 71 SI 72
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWL-----QCK----GCTSCFPINGGSFPVKESKTY 137
Y I +GS Q +V+DTGS D W+ +C+ G T+ F G+F S +
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSA 73
Query: 138 RGLACDHPL 146
+ L D +
Sbjct: 74 QNLNQDFSI 82
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWL--QCKGCTSCFPINGGSFPVKESKTY--RGLAC 142
Y I++GS ++VDTGS D W+ C + F K+ TY G +
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADF-CKQKGTYDPSGSSA 72
Query: 143 DHPLCVPKLCVIKEGSGTKGVLSSESFTF 171
L P +GS ++G L ++ F
Sbjct: 73 SQDLNTPFKIGYGDGSSSQGTLYKDTVGF 101
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTY 137
Y ISIG+ S ++ DTGS + W+ C++ N F ++S TY
Sbjct: 14 YYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTY 64
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKG--CTSCFPINGGSFPVKESKTY--RGLAC 142
Y I++GS ++VDTGS D W+ C + F K+ TY G +
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADF-CKQKGTYDPSGSSA 72
Query: 143 DHPLCVPKLCVIKEGSGTKGVLSSESFTF 171
L P +GS ++G L ++ F
Sbjct: 73 SQDLNTPFSIGYGDGSSSQGTLYKDTVGF 101
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQC 115
Y+ + +GS + L+VDTGS +TWL
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGA 42
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWL---------QCKGCTSCFPINGGSFPVKESKTY 137
Y I++GS ++VDTGS D W+ + +G F + GS+ S+T
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTS 73
Query: 138 RGL 140
+ L
Sbjct: 74 QNL 76
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 79 SPFANTNIYITKISIGSTQFSTYLVVDTGSDDTWL 113
+P AN YIT ++IG T + L DTGS D W+
Sbjct: 9 TPTANDEEYITPVTIGGTTLN--LNFDTGSADLWV 41
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 71 TLKPPVYPSPFANTNIYITKISIGSTQFSTYLVVDTGSDDTWL 113
T P +PS A++ YIT +SIG+ L DTGS D W+
Sbjct: 2 TGSAPNHPSDSADSE-YITSVSIGTPAQVLPLDFDTGSSDLWV 43
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWL 113
Y + I++GS + +V+DTGS D W+
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWV 40
>pdb|3CXE|A Chain A, Structure Of The Gm-Csf Receptor Complex
Length = 414
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 141 ACDHPLCVPKLCVI 154
AC HP CVP+ CVI
Sbjct: 61 ACPHPRCVPRRCVI 74
>pdb|1GH7|A Chain A, Crystal Structure Of The Complete Extracellular Domain Of
The Beta- Common Receptor Of Il-3, Il-5, And Gm-Csf
pdb|1GH7|B Chain B, Crystal Structure Of The Complete Extracellular Domain Of
The Beta- Common Receptor Of Il-3, Il-5, And Gm-Csf
pdb|2GYS|A Chain A, 2.7 A Structure Of The Extracellular Domains Of The Human
Beta Common Receptor Involved In Il-3, Il-5, And Gm-Csf
Signalling
pdb|2GYS|B Chain B, 2.7 A Structure Of The Extracellular Domains Of The Human
Beta Common Receptor Involved In Il-3, Il-5, And Gm-Csf
Signalling
Length = 419
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 141 ACDHPLCVPKLCVI 154
AC HP CVP+ CVI
Sbjct: 61 ACPHPRCVPRRCVI 74
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPL 146
Y KI +G+ ++ DTGS D W+ C S N F ++S T++ L PL
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLG--KPL 73
Query: 147 CVPKLCVIKEGSGT-KGVLSSESFT 170
I G+G+ +G+L ++ T
Sbjct: 74 S------IHYGTGSMQGILGYDTVT 92
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPL 146
Y KI +G+ ++ DTGS D W+ C S N F ++S T++ L PL
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLG--KPL 73
Query: 147 CVPKLCVIKEGSGT-KGVLSSESFT 170
I G+G+ +G+L ++ T
Sbjct: 74 S------IHYGTGSMQGILGYDTVT 92
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPL 146
Y T I++G+ + +++DTGS + W+ C S + + S +Y+ + +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAI 74
Query: 147 CVPKLCVIKEGSGTKGVLSSESFTFPRDK------NTSLTFANVTF----GCGYDNQNVS 196
+ EG ++ LS T P+ LTFA F G GYD +V
Sbjct: 75 QYGTGSL--EGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVD 132
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPL 146
Y T I++G+ + +++DTGS + W+ C S + + S +Y+ + +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAI 74
Query: 147 CVPKLCVIKEGSGTKGVLSSESFTFPRDK------NTSLTFANVTF----GCGYDNQNVS 196
+ EG ++ LS T P+ LTFA F G GYD +V
Sbjct: 75 QYGTGSL--EGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVD 132
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYR 138
Y I IG+ +V DTGS + W+ C+S N F ++S TY+
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQ 65
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 12/120 (10%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPL 146
Y T I++G+ + +++DTGS + W+ C S + + S +Y+ + +
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAI 74
Query: 147 CVPKLCVIKEGSGTKGVLSSESFTFPRDK------NTSLTFANVTF----GCGYDNQNVS 196
+ EG ++ LS T P+ LTFA F G GYD +V
Sbjct: 75 QYGTGSL--EGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVD 132
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYR 138
Y I IG+ +V DTGS + W+ C+S N F ++S TY+
Sbjct: 14 YFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNRFNPEDSSTYQ 65
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 81 FANTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSC 121
+ N Y +++IG+ L DTGS D W+ CT+C
Sbjct: 11 YGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC 51
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 81 FANTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSC 121
+ N Y +++IG+ L DTGS D W+ CT+C
Sbjct: 11 YGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC 51
>pdb|3RRK|A Chain A, Crystal Structure Of The Cytoplasmic N-Terminal Domain Of
Subunit I, Homolog Of Subunit A, Of V-Atpase
Length = 357
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 62 HHRSNQEPETLKPPVYPSPFANTNIYITKISIGS 95
HH S+Q P TL+ P + PF + ++ + GS
Sbjct: 322 HHESHQVPVTLENPAWAKPFELLHGFLNTPAYGS 355
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTY 137
Y ISIGS + ++ DTGS + W+ CTS F +S TY
Sbjct: 25 YFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTY 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,785,577
Number of Sequences: 62578
Number of extensions: 322725
Number of successful extensions: 658
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 57
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)