Query 035770
Match_columns 244
No_of_seqs 170 out of 1395
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:14:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 6E-46 1.3E-50 345.6 24.4 214 16-239 17-244 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.8E-33 3.8E-38 259.6 17.3 155 81-242 41-210 (398)
3 PF14543 TAXi_N: Xylanase inhi 100.0 1.1E-33 2.3E-38 231.4 11.4 135 87-238 1-151 (164)
4 PTZ00165 aspartyl protease; Pr 100.0 2.8E-30 6E-35 243.0 22.3 156 72-242 109-276 (482)
5 cd05478 pepsin_A Pepsin A, asp 100.0 1.8E-28 3.8E-33 219.6 17.3 146 75-240 2-156 (317)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 1.3E-28 2.8E-33 221.1 15.8 140 81-239 1-153 (325)
7 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.6E-28 3.5E-33 220.8 15.1 149 85-239 2-171 (326)
8 cd05477 gastricsin Gastricsins 100.0 2.5E-27 5.5E-32 212.1 17.2 139 84-239 1-148 (318)
9 cd05488 Proteinase_A_fungi Fun 99.9 4E-27 8.7E-32 211.2 16.4 144 82-242 6-158 (320)
10 cd06098 phytepsin Phytepsin, a 99.9 5E-27 1.1E-31 210.4 15.7 140 81-239 5-156 (317)
11 PTZ00147 plasmepsin-1; Provisi 99.9 6.4E-27 1.4E-31 218.7 16.4 151 71-242 127-288 (453)
12 cd05485 Cathepsin_D_like Cathe 99.9 1.1E-26 2.4E-31 209.3 15.6 141 81-240 6-159 (329)
13 cd05486 Cathespin_E Cathepsin 99.9 8.1E-27 1.8E-31 208.8 14.3 134 87-239 1-145 (316)
14 cd06097 Aspergillopepsin_like 99.9 2.9E-26 6.2E-31 201.7 15.8 137 87-238 1-147 (278)
15 cd05475 nucellin_like Nucellin 99.9 5.2E-26 1.1E-30 199.8 15.3 124 85-238 1-127 (273)
16 PTZ00013 plasmepsin 4 (PM4); P 99.9 7.7E-26 1.7E-30 211.2 16.8 149 72-241 127-286 (450)
17 cd05487 renin_like Renin stimu 99.9 1E-25 2.2E-30 202.5 15.8 142 81-240 3-155 (326)
18 cd05472 cnd41_like Chloroplast 99.9 6.2E-26 1.4E-30 201.4 12.8 114 86-240 1-114 (299)
19 cd05470 pepsin_retropepsin_lik 99.9 1.4E-24 3.1E-29 164.8 12.5 108 89-213 1-109 (109)
20 cd05471 pepsin_like Pepsin-lik 99.9 3.9E-24 8.4E-29 186.6 16.5 135 87-239 1-146 (283)
21 cd05489 xylanase_inhibitor_I_l 99.9 1.2E-24 2.6E-29 198.6 12.4 128 93-240 2-160 (362)
22 cd05473 beta_secretase_like Be 99.9 2.6E-23 5.7E-28 189.7 14.6 133 85-236 2-144 (364)
23 cd05476 pepsin_A_like_plant Ch 99.9 3.8E-23 8.3E-28 180.7 13.5 111 86-239 1-111 (265)
24 PF00026 Asp: Eukaryotic aspar 99.9 3.3E-22 7.2E-27 177.5 9.7 138 86-240 1-149 (317)
25 cd05474 SAP_like SAPs, pepsin- 99.9 1E-20 2.3E-25 167.0 14.1 106 86-242 2-121 (295)
26 cd05483 retropepsin_like_bacte 97.9 6.5E-05 1.4E-09 54.6 8.2 93 86-215 2-94 (96)
27 TIGR02281 clan_AA_DTGA clan AA 95.7 0.043 9.4E-07 42.4 6.7 94 83-215 8-103 (121)
28 PF13650 Asp_protease_2: Aspar 95.0 0.17 3.7E-06 35.8 7.6 89 90-215 2-90 (90)
29 cd05479 RP_DDI RP_DDI; retrope 92.3 0.84 1.8E-05 35.2 7.5 31 84-116 14-44 (124)
30 cd05484 retropepsin_like_LTR_2 88.2 0.6 1.3E-05 33.7 3.3 28 87-116 1-28 (91)
31 PF13975 gag-asp_proteas: gag- 78.6 4.3 9.3E-05 28.1 4.2 33 83-117 5-37 (72)
32 PF00077 RVP: Retroviral aspar 72.2 5.8 0.00013 28.7 3.7 27 88-116 7-33 (100)
33 cd05482 HIV_retropepsin_like R 61.4 11 0.00024 27.3 3.3 23 91-115 3-25 (87)
34 cd06095 RP_RTVL_H_like Retrope 49.5 16 0.00035 26.0 2.5 20 97-116 7-26 (86)
35 PF12384 Peptidase_A2B: Ty3 tr 42.2 35 0.00076 28.0 3.5 28 88-115 34-61 (177)
36 PF07172 GRP: Glycine rich pro 35.0 24 0.00052 26.1 1.5 13 1-13 1-13 (95)
37 cd05475 nucellin_like Nucellin 27.5 69 0.0015 27.7 3.4 32 85-116 157-194 (273)
38 COG3577 Predicted aspartyl pro 26.8 98 0.0021 26.4 3.9 75 83-184 102-178 (215)
39 TIGR03698 clan_AA_DTGF clan AA 26.5 83 0.0018 23.4 3.2 23 89-111 2-28 (107)
40 PF10731 Anophelin: Thrombin i 26.1 51 0.0011 22.3 1.7 19 1-19 1-19 (65)
41 PF09668 Asp_protease: Asparty 23.4 1.4E+02 0.0031 23.1 4.0 30 84-115 22-51 (124)
42 cd06097 Aspergillopepsin_like 22.1 65 0.0014 27.8 2.2 32 85-116 177-215 (278)
43 PLN03146 aspartyl protease fam 21.4 1.3E+02 0.0028 28.2 4.1 16 101-116 309-324 (431)
44 cd05471 pepsin_like Pepsin-lik 20.7 65 0.0014 27.3 1.9 34 84-117 179-220 (283)
45 cd06094 RP_Saci_like RP_Saci_l 20.5 90 0.0019 22.8 2.2 21 98-118 8-28 (89)
46 cd06096 Plasmepsin_5 Plasmepsi 20.2 84 0.0018 27.9 2.5 32 85-116 208-248 (326)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=6e-46 Score=345.64 Aligned_cols=214 Identities=30% Similarity=0.552 Sum_probs=181.9
Q ss_pred hhcccCcceEEEEecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhccCCCCCCCCCcccCCCCCCceEEEEEEecC
Q 035770 16 TLTSKINGFRIELTPRTCIDSALFPKDLSPEEIHHRIAQLSRARAIHHRSNQEPETLKPPVYPSPFANTNIYITKISIGS 95 (244)
Q Consensus 16 ~~~~~~~~~~l~L~hr~~~~s~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~pl~~~~~~~~~~Y~~~v~iGt 95 (244)
...+...+++++|+||+++|+|++++..++.++++++++|+.+|.+++.++.. ...|+..+....+++|+++|.|||
T Consensus 17 ~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~Y~v~i~iGT 93 (431)
T PLN03146 17 AAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDA---SPNDPQSDLISNGGEYLMNISIGT 93 (431)
T ss_pred hccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccc---cCCccccCcccCCccEEEEEEcCC
Confidence 33456788999999999999999888888889999999999999999865422 123444443345789999999999
Q ss_pred CCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCC----------ceee----eCCCCeEE
Q 035770 96 TQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVP----------KLCV----IKEGSGTK 161 (244)
Q Consensus 96 P~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~----------~~c~----Y~~gs~~~ 161 (244)
|||++.|++||||+++||+|.+|..|..|.++.|||++|+||+.++|.++.|+. ..|. |+||+.+.
T Consensus 94 Ppq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~Ygdgs~~~ 173 (431)
T PLN03146 94 PPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYGDGSFTK 173 (431)
T ss_pred CCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEEeCCCCcee
Confidence 999999999999999999999999999888999999999999999999999863 1254 56998889
Q ss_pred EEEEEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCchHHhhhcccCCceEEecCCC
Q 035770 162 GVLSSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSILRQLEPETNLRFSYCLRLY 239 (244)
Q Consensus 162 G~~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~~~ql~~~~~~~FSycL~~~ 239 (244)
|.+++|+|+|++..+..+.++++.|||++.+.+ .|. ...+||||||++++|+++||...+.++|||||++.
T Consensus 174 G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g-~f~------~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~ 244 (431)
T PLN03146 174 GNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGG-TFD------EKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPL 244 (431)
T ss_pred eEEEEEEEEeccCCCCcceeCCEEEeCCCCCCC-Ccc------CCCceeEecCCCCccHHHHhhHhhCCcEEEECCCC
Confidence 999999999988654445789999999998877 563 46899999999999999999877777999999864
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-33 Score=259.62 Aligned_cols=155 Identities=35% Similarity=0.603 Sum_probs=131.9
Q ss_pred CCCCceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCC-CCCCCCCCCCCCCCCCcccccCCCCCCCCC----------
Q 035770 81 FANTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCT-SCFPINGGSFPVKESKTYRGLACDHPLCVP---------- 149 (244)
Q Consensus 81 ~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~-~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~---------- 149 (244)
.+.+++|+++|.||||||.|.|++||||+++||+|.+|. .|..+.++.|+|++|+||+.+.|.++.|..
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~ 120 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSS 120 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCc
Confidence 356789999999999999999999999999999999999 898665666999999999999999998864
Q ss_pred --ceeeeCCCCeEEEEEEEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCchHHhhhcc
Q 035770 150 --KLCVIKEGSGTKGVLSSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSILRQLEPE 227 (244)
Q Consensus 150 --~~c~Y~~gs~~~G~~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~~~ql~~~ 227 (244)
+.+.|+||+.++|++++|+|++++.+ .+.+++++|||+..+.+. |. .. .+.+||||||++.+|+++|+...
T Consensus 121 C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~-~~---~~-~~~dGIlGLg~~~~S~~~q~~~~ 193 (398)
T KOG1339|consen 121 CPYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGS-FG---LF-AAFDGILGLGRGSLSVPSQLPSF 193 (398)
T ss_pred CceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccc-cc---cc-cccceEeecCCCCccceeecccc
Confidence 34457797888999999999999842 227788999999999874 43 11 57899999999999999999887
Q ss_pred c--CCceEEecCCCCCC
Q 035770 228 T--NLRFSYCLRLYPTT 242 (244)
Q Consensus 228 ~--~~~FSycL~~~~~~ 242 (244)
. .++|||||.+..+.
T Consensus 194 ~~~~~~FS~cL~~~~~~ 210 (398)
T KOG1339|consen 194 YNAINVFSYCLSSNGSP 210 (398)
T ss_pred cCCceeEEEEeCCCCCC
Confidence 3 34599999998643
No 3
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=1.1e-33 Score=231.40 Aligned_cols=135 Identities=38% Similarity=0.693 Sum_probs=111.5
Q ss_pred EEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCC------------ceeee
Q 035770 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVP------------KLCVI 154 (244)
Q Consensus 87 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~------------~~c~Y 154 (244)
|+++|.||||+|++.|++||||+++|++| ..+.|+|++|+||+.++|.++.|.. ..|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999999 3688999999999999999998852 45765
Q ss_pred C----CCCeEEEEEEEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCchHHhhhcccCC
Q 035770 155 K----EGSGTKGVLSSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSILRQLEPETNL 230 (244)
Q Consensus 155 ~----~gs~~~G~~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~~~ql~~~~~~ 230 (244)
. +++.+.|++++|+|+++..+++...+.++.|||++...+ .+ ...+||||||++++||++||+.+..+
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g-~~-------~~~~GilGLg~~~~Sl~sQl~~~~~~ 143 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSG-LF-------YGADGILGLGRGPLSLPSQLASSSGN 143 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGT-SS-------TTEEEEEE-SSSTTSHHHHHHHH--S
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeecccc-CC-------cCCCcccccCCCcccHHHHHHHhcCC
Confidence 4 899999999999999998765556889999999999987 44 58999999999999999999777789
Q ss_pred ceEEecCC
Q 035770 231 RFSYCLRL 238 (244)
Q Consensus 231 ~FSycL~~ 238 (244)
+|||||++
T Consensus 144 ~FSyCL~~ 151 (164)
T PF14543_consen 144 KFSYCLPS 151 (164)
T ss_dssp EEEEEB-S
T ss_pred eEEEECCC
Confidence 99999999
No 4
>PTZ00165 aspartyl protease; Provisional
Probab=99.97 E-value=2.8e-30 Score=242.98 Aligned_cols=156 Identities=21% Similarity=0.301 Sum_probs=125.3
Q ss_pred CCCCcccCCCCCCceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCce
Q 035770 72 LKPPVYPSPFANTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKL 151 (244)
Q Consensus 72 ~~~pl~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~ 151 (244)
...||.+ +.|.+|+++|.||||||+|.|++||||+++||+|..|..|..+.++.|||++|+||+.+.+... +..+.
T Consensus 109 ~~~~l~n---~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~~-~~~~~ 184 (482)
T PTZ00165 109 LQQDLLN---FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGDE-SAETY 184 (482)
T ss_pred cceeccc---ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCCc-cceEE
Confidence 3455554 7899999999999999999999999999999999999854445788999999999998543221 12356
Q ss_pred eeeCCCCeEEEEEEEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCC---------chHH
Q 035770 152 CVIKEGSGTKGVLSSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQR---------SILR 222 (244)
Q Consensus 152 c~Y~~gs~~~G~~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~---------S~~~ 222 (244)
+.|++|+. .|.+++|+|+|++. .++++.|||++...+..|. ...+|||||||++.+ ++..
T Consensus 185 i~YGsGs~-~G~l~~DtV~ig~l-----~i~~q~FG~a~~~s~~~f~-----~~~~DGILGLg~~~~s~~s~~~~~p~~~ 253 (482)
T PTZ00165 185 IQYGTGEC-VLALGKDTVKIGGL-----KVKHQSIGLAIEESLHPFA-----DLPFDGLVGLGFPDKDFKESKKALPIVD 253 (482)
T ss_pred EEeCCCcE-EEEEEEEEEEECCE-----EEccEEEEEEEeccccccc-----cccccceeecCCCcccccccCCCCCHHH
Confidence 88999986 79999999999987 8999999999987654454 357899999999875 3455
Q ss_pred hhhcc---cCCceEEecCCCCCC
Q 035770 223 QLEPE---TNLRFSYCLRLYPTT 242 (244)
Q Consensus 223 ql~~~---~~~~FSycL~~~~~~ 242 (244)
+|..+ -.+.||+||++..+.
T Consensus 254 ~l~~qgli~~~~FS~yL~~~~~~ 276 (482)
T PTZ00165 254 NIKKQNLLKRNIFSFYMSKDLNQ 276 (482)
T ss_pred HHHHcCCcccceEEEEeccCCCC
Confidence 67665 268999999865443
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=99.96 E-value=1.8e-28 Score=219.58 Aligned_cols=146 Identities=23% Similarity=0.293 Sum_probs=122.4
Q ss_pred CcccCCCCCCceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCceeee
Q 035770 75 PVYPSPFANTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVI 154 (244)
Q Consensus 75 pl~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y 154 (244)
||.+ +.+.+|+++|.||||||++.|++||||+++||+|..|..|..+.++.|||++|+|++...| .....|
T Consensus 2 ~l~n---~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~~------~~~~~y 72 (317)
T cd05478 2 PLTN---YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTGQ------PLSIQY 72 (317)
T ss_pred cccc---ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCCc------EEEEEE
Confidence 5554 5689999999999999999999999999999999999865445789999999999988763 467889
Q ss_pred CCCCeEEEEEEEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCc------hHHhhhcc-
Q 035770 155 KEGSGTKGVLSSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRS------ILRQLEPE- 227 (244)
Q Consensus 155 ~~gs~~~G~~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S------~~~ql~~~- 227 (244)
++|+ +.|.+++|+|+|++. .++++.|||++...+ .|. .....+||||||++.++ ++.||+++
T Consensus 73 g~gs-~~G~~~~D~v~ig~~-----~i~~~~fg~~~~~~~-~~~----~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g 141 (317)
T cd05478 73 GTGS-MTGILGYDTVQVGGI-----SDTNQIFGLSETEPG-SFF----YYAPFDGILGLAYPSIASSGATPVFDNMMSQG 141 (317)
T ss_pred CCce-EEEEEeeeEEEECCE-----EECCEEEEEEEecCc-ccc----ccccccceeeeccchhcccCCCCHHHHHHhCC
Confidence 9998 589999999999987 899999999988766 332 12458999999998654 77888776
Q ss_pred -c-CCceEEecCCCC
Q 035770 228 -T-NLRFSYCLRLYP 240 (244)
Q Consensus 228 -~-~~~FSycL~~~~ 240 (244)
+ .+.|||||++..
T Consensus 142 ~i~~~~FS~~L~~~~ 156 (317)
T cd05478 142 LVSQDLFSVYLSSNG 156 (317)
T ss_pred CCCCCEEEEEeCCCC
Confidence 3 689999999864
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=99.96 E-value=1.3e-28 Score=221.06 Aligned_cols=140 Identities=21% Similarity=0.334 Sum_probs=117.5
Q ss_pred CCCCceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCC----CCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCC
Q 035770 81 FANTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCT----SCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKE 156 (244)
Q Consensus 81 ~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~----~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~ 156 (244)
|+.+.+|+++|.||||||+|.|++||||+++||+|..|. .|. .++.|+|++|+||+...| .+.+.|++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~--~~~~y~~~~SsT~~~~~~------~~~i~Yg~ 72 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACW--LHHKYNSSKSSTYVKNGT------EFAIQYGS 72 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCcccc--CcCcCCcccCcceeeCCc------EEEEEECC
Confidence 367899999999999999999999999999999999997 464 578999999999987542 47788999
Q ss_pred CCeEEEEEEEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCch------HHhhhcc---
Q 035770 157 GSGTKGVLSSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSI------LRQLEPE--- 227 (244)
Q Consensus 157 gs~~~G~~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~------~~ql~~~--- 227 (244)
|+ +.|.+++|+|+|++. .++++.|||++...+..|. ....+||||||++.+|. +.+|..+
T Consensus 73 G~-~~G~~~~D~v~~g~~-----~~~~~~Fg~~~~~~~~~~~-----~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i 141 (325)
T cd05490 73 GS-LSGYLSQDTVSIGGL-----QVEGQLFGEAVKQPGITFI-----AAKFDGILGMAYPRISVDGVTPVFDNIMAQKLV 141 (325)
T ss_pred cE-EEEEEeeeEEEECCE-----EEcCEEEEEEeeccCCccc-----ceeeeEEEecCCccccccCCCCHHHHHHhcCCC
Confidence 97 589999999999987 8999999999887663343 35689999999987764 4466655
Q ss_pred cCCceEEecCCC
Q 035770 228 TNLRFSYCLRLY 239 (244)
Q Consensus 228 ~~~~FSycL~~~ 239 (244)
..+.|||||++.
T Consensus 142 ~~~~FS~~L~~~ 153 (325)
T cd05490 142 EQNVFSFYLNRD 153 (325)
T ss_pred CCCEEEEEEeCC
Confidence 368999999865
No 7
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=99.96 E-value=1.6e-28 Score=220.78 Aligned_cols=149 Identities=27% Similarity=0.361 Sum_probs=118.3
Q ss_pred ceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCC----------ceeee
Q 035770 85 NIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVP----------KLCVI 154 (244)
Q Consensus 85 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~----------~~c~Y 154 (244)
++|+++|.||||||++.|++||||+++||+|..|..|..+.++.|+|++|+|++.+.|.+..|.. ..+.|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~i~Y 81 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYSISY 81 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEEEEE
Confidence 58999999999999999999999999999999999998777899999999999999999887732 34567
Q ss_pred CCCCeEEEEEEEEEEEECCCCCC--ceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCchH-H---hhhcc-
Q 035770 155 KEGSGTKGVLSSESFTFPRDKNT--SLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSIL-R---QLEPE- 227 (244)
Q Consensus 155 ~~gs~~~G~~~~D~l~~~~~~~~--~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~~-~---ql~~~- 227 (244)
.+|+.+.|.+++|+|+|++.... .....++.|||+....+ .|. ....+||||||++..+-. . ++..+
T Consensus 82 ~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~-----~~~~~GilGLg~~~~~~~~~~~~~l~~~~ 155 (326)
T cd06096 82 SEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFL-----TQQATGILGLSLTKNNGLPTPIILLFTKR 155 (326)
T ss_pred CCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-ccc-----ccccceEEEccCCcccccCchhHHHHHhc
Confidence 79987899999999999876311 01123578999988876 453 356899999999875321 1 12111
Q ss_pred --c--CCceEEecCCC
Q 035770 228 --T--NLRFSYCLRLY 239 (244)
Q Consensus 228 --~--~~~FSycL~~~ 239 (244)
. .++||+||++.
T Consensus 156 ~~~~~~~~FS~~l~~~ 171 (326)
T cd06096 156 PKLKKDKIFSICLSED 171 (326)
T ss_pred ccccCCceEEEEEcCC
Confidence 1 48999999864
No 8
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=99.95 E-value=2.5e-27 Score=212.10 Aligned_cols=139 Identities=22% Similarity=0.296 Sum_probs=116.5
Q ss_pred CceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCCCeEEEE
Q 035770 84 TNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEGSGTKGV 163 (244)
Q Consensus 84 ~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~G~ 163 (244)
|.+|+++|.||||||++.|++||||+++||+|..|..+....++.|||++|+||+...| .....|++|+. .|.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~~------~~~~~Yg~Gs~-~G~ 73 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNGE------TFSLQYGSGSL-TGI 73 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECCc------EEEEEECCcEE-EEE
Confidence 46899999999999999999999999999999999843334678999999999987663 36788999985 899
Q ss_pred EEEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCC------CchHHhhhcc--c-CCceEE
Q 035770 164 LSSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQ------RSILRQLEPE--T-NLRFSY 234 (244)
Q Consensus 164 ~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~------~S~~~ql~~~--~-~~~FSy 234 (244)
+++|+|+|++. .++++.|||++...+..|. ....+||||||++. .+++.||..+ + .++|||
T Consensus 74 ~~~D~i~~g~~-----~i~~~~Fg~~~~~~~~~~~-----~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~ 143 (318)
T cd05477 74 FGYDTVTVQGI-----IITNQEFGLSETEPGTNFV-----YAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSF 143 (318)
T ss_pred EEeeEEEECCE-----EEcCEEEEEEEeccccccc-----ccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEE
Confidence 99999999987 8999999999987652332 24679999999853 5678888776 3 689999
Q ss_pred ecCCC
Q 035770 235 CLRLY 239 (244)
Q Consensus 235 cL~~~ 239 (244)
||++.
T Consensus 144 ~L~~~ 148 (318)
T cd05477 144 YLSGQ 148 (318)
T ss_pred EEcCC
Confidence 99875
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=99.95 E-value=4e-27 Score=211.19 Aligned_cols=144 Identities=19% Similarity=0.301 Sum_probs=117.4
Q ss_pred CCCceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCCCeEE
Q 035770 82 ANTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEGSGTK 161 (244)
Q Consensus 82 ~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~ 161 (244)
+.+.+|+++|.||||+|++.|++||||+++||+|..|..+....++.|+|++|+|++...| ...+.|++|+ +.
T Consensus 6 ~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~~------~~~~~y~~g~-~~ 78 (320)
T cd05488 6 YLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANGT------EFKIQYGSGS-LE 78 (320)
T ss_pred cCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCCC------EEEEEECCce-EE
Confidence 5578999999999999999999999999999999999742223568999999999987663 3677899998 59
Q ss_pred EEEEEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCchHH------hhhcc---cCCce
Q 035770 162 GVLSSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSILR------QLEPE---TNLRF 232 (244)
Q Consensus 162 G~~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~~~------ql~~~---~~~~F 232 (244)
|.+++|+|+|++. .++++.|||+....+..|. ....+||||||++.++... +|..+ ..++|
T Consensus 79 G~~~~D~v~ig~~-----~~~~~~f~~a~~~~g~~~~-----~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~F 148 (320)
T cd05488 79 GFVSQDTLSIGDL-----TIKKQDFAEATSEPGLAFA-----FGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVF 148 (320)
T ss_pred EEEEEeEEEECCE-----EECCEEEEEEecCCCccee-----eeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEE
Confidence 9999999999886 8899999999877653332 2468999999999887654 34443 26899
Q ss_pred EEecCCCCCC
Q 035770 233 SYCLRLYPTT 242 (244)
Q Consensus 233 SycL~~~~~~ 242 (244)
||||++....
T Consensus 149 S~~L~~~~~~ 158 (320)
T cd05488 149 SFYLGSSEED 158 (320)
T ss_pred EEEecCCCCC
Confidence 9999986433
No 10
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=99.95 E-value=5e-27 Score=210.41 Aligned_cols=140 Identities=22% Similarity=0.333 Sum_probs=117.0
Q ss_pred CCCCceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCC---CCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCC
Q 035770 81 FANTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCT---SCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEG 157 (244)
Q Consensus 81 ~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~---~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~g 157 (244)
|+.+.+|+++|.||||||++.|++||||+++||+|..|. .|. .++.|+|++|+||+... ....+.|++|
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------~~~~i~Yg~G 76 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYKSSKSSTYKKNG------TSASIQYGTG 76 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccc--ccCcCCcccCCCcccCC------CEEEEEcCCc
Confidence 367899999999999999999999999999999999996 685 57899999999998765 3467889999
Q ss_pred CeEEEEEEEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCch------HHhhhcc--c-
Q 035770 158 SGTKGVLSSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSI------LRQLEPE--T- 228 (244)
Q Consensus 158 s~~~G~~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~------~~ql~~~--~- 228 (244)
+. .|.+++|+|+|++. .++++.|||++...+..|. ....+||||||++.+|. ..+|.++ +
T Consensus 77 ~~-~G~~~~D~v~ig~~-----~v~~~~f~~~~~~~~~~~~-----~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~ 145 (317)
T cd06098 77 SI-SGFFSQDSVTVGDL-----VVKNQVFIEATKEPGLTFL-----LAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVK 145 (317)
T ss_pred eE-EEEEEeeEEEECCE-----EECCEEEEEEEecCCcccc-----ccccceeccccccchhhcCCCCHHHHHHhcCCCC
Confidence 84 89999999999987 8999999999877553343 35789999999987764 3356554 2
Q ss_pred CCceEEecCCC
Q 035770 229 NLRFSYCLRLY 239 (244)
Q Consensus 229 ~~~FSycL~~~ 239 (244)
.+.|||||++.
T Consensus 146 ~~~FS~~L~~~ 156 (317)
T cd06098 146 EPVFSFWLNRN 156 (317)
T ss_pred CCEEEEEEecC
Confidence 67999999864
No 11
>PTZ00147 plasmepsin-1; Provisional
Probab=99.95 E-value=6.4e-27 Score=218.70 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=121.5
Q ss_pred CCCCCcccCCCCCCceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCc
Q 035770 71 TLKPPVYPSPFANTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPK 150 (244)
Q Consensus 71 ~~~~pl~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~ 150 (244)
....||.+ +.+.+|+++|.||||||+|.|++||||+++||+|..|..|..+.++.|||++|+||+..+| .+
T Consensus 127 ~~~v~L~n---~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~~------~f 197 (453)
T PTZ00147 127 FDNVELKD---LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDGT------KV 197 (453)
T ss_pred CCeeeccc---cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECCC------EE
Confidence 34556654 4578999999999999999999999999999999999854445788999999999988773 47
Q ss_pred eeeeCCCCeEEEEEEEEEEEECCCCCCceeeccEEEEEEEecCCC--ccccCCCCCCCcceEEeeCCCCCch------HH
Q 035770 151 LCVIKEGSGTKGVLSSESFTFPRDKNTSLTFANVTFGCGYDNQNV--SFGGHMGSDNIITGVFGLGAGQRSI------LR 222 (244)
Q Consensus 151 ~c~Y~~gs~~~G~~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~--~f~~~~~~~~~~~GIlGLg~~~~S~------~~ 222 (244)
.+.|++|+ +.|.+++|+|+|++. .++ ..|+|+....+. .+. ....|||||||++.+|. +.
T Consensus 198 ~i~Yg~Gs-vsG~~~~DtVtiG~~-----~v~-~qF~~~~~~~~f~~~~~-----~~~~DGILGLG~~~~S~~~~~p~~~ 265 (453)
T PTZ00147 198 EMNYVSGT-VSGFFSKDLVTIGNL-----SVP-YKFIEVTDTNGFEPFYT-----ESDFDGIFGLGWKDLSIGSVDPYVV 265 (453)
T ss_pred EEEeCCCC-EEEEEEEEEEEECCE-----EEE-EEEEEEEeccCcccccc-----cccccceecccCCccccccCCCHHH
Confidence 88999997 599999999999986 677 579998876541 121 34689999999988764 45
Q ss_pred hhhcc--c-CCceEEecCCCCCC
Q 035770 223 QLEPE--T-NLRFSYCLRLYPTT 242 (244)
Q Consensus 223 ql~~~--~-~~~FSycL~~~~~~ 242 (244)
+|..+ + .++||+||++....
T Consensus 266 ~L~~qg~I~~~vFS~~L~~~~~~ 288 (453)
T PTZ00147 266 ELKNQNKIEQAVFTFYLPPEDKH 288 (453)
T ss_pred HHHHcCCCCccEEEEEecCCCCC
Confidence 77655 3 67899999875443
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=99.94 E-value=1.1e-26 Score=209.28 Aligned_cols=141 Identities=23% Similarity=0.389 Sum_probs=118.6
Q ss_pred CCCCceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCC----CCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCC
Q 035770 81 FANTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCT----SCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKE 156 (244)
Q Consensus 81 ~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~----~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~ 156 (244)
|+.+.+|+++|.||||+|++.|++||||+++||+|..|. .|. .++.|+|++|+|++...| .+.+.|.+
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~--~~~~y~~~~Sst~~~~~~------~~~i~Y~~ 77 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACL--LHNKYDSTKSSTYKKNGT------EFAIQYGS 77 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCcccc--CCCeECCcCCCCeEECCe------EEEEEECC
Confidence 467899999999999999999999999999999999997 463 467899999999988763 46788999
Q ss_pred CCeEEEEEEEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCch------HHhhhcc--c
Q 035770 157 GSGTKGVLSSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSI------LRQLEPE--T 228 (244)
Q Consensus 157 gs~~~G~~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~------~~ql~~~--~ 228 (244)
|+ +.|.+++|+|+|++. .++++.|||+....+..|. ....+||||||++.+|. ..||+++ +
T Consensus 78 g~-~~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~-----~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i 146 (329)
T cd05485 78 GS-LSGFLSTDTVSVGGV-----SVKGQTFAEAINEPGLTFV-----AAKFDGILGMGYSSISVDGVVPVFYNMVNQKLV 146 (329)
T ss_pred ce-EEEEEecCcEEECCE-----EECCEEEEEEEecCCcccc-----ccccceEEEcCCccccccCCCCHHHHHHhCCCC
Confidence 98 599999999999987 8899999999877653343 35689999999998764 4577665 3
Q ss_pred -CCceEEecCCCC
Q 035770 229 -NLRFSYCLRLYP 240 (244)
Q Consensus 229 -~~~FSycL~~~~ 240 (244)
.+.||+||++..
T Consensus 147 ~~~~FS~~l~~~~ 159 (329)
T cd05485 147 DAPVFSFYLNRDP 159 (329)
T ss_pred CCCEEEEEecCCC
Confidence 689999998754
No 13
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=99.94 E-value=8.1e-27 Score=208.77 Aligned_cols=134 Identities=24% Similarity=0.373 Sum_probs=113.4
Q ss_pred EEEEEEecCCCceeeEEEeCCCCceEEeCCCCC--CCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCCCeEEEEE
Q 035770 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCT--SCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEGSGTKGVL 164 (244)
Q Consensus 87 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~--~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~G~~ 164 (244)
|+++|.||||||++.|++||||+++||+|..|. .| ..++.|||++|+||+...| ...+.|++|+ +.|.+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C--~~~~~y~~~~SsT~~~~~~------~~~i~Yg~g~-~~G~~ 71 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQAC--TKHNRFQPSESSTYVSNGE------AFSIQYGTGS-LTGII 71 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCccc--CccceECCCCCcccccCCc------EEEEEeCCcE-EEEEe
Confidence 899999999999999999999999999999997 46 4678999999999988774 4678899997 59999
Q ss_pred EEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCch------HHhhhcc--c-CCceEEe
Q 035770 165 SSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSI------LRQLEPE--T-NLRFSYC 235 (244)
Q Consensus 165 ~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~------~~ql~~~--~-~~~FSyc 235 (244)
++|+|+|++. .++++.|||+....+..|. ....+||||||++.++. ..+|..+ + .+.||+|
T Consensus 72 ~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~-----~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~ 141 (316)
T cd05486 72 GIDQVTVEGI-----TVQNQQFAESVSEPGSTFQ-----DSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVY 141 (316)
T ss_pred eecEEEECCE-----EEcCEEEEEeeccCccccc-----ccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEE
Confidence 9999999986 8999999999877653453 35789999999987763 5666655 3 5789999
Q ss_pred cCCC
Q 035770 236 LRLY 239 (244)
Q Consensus 236 L~~~ 239 (244)
|++.
T Consensus 142 L~~~ 145 (316)
T cd05486 142 MSRN 145 (316)
T ss_pred EccC
Confidence 9864
No 14
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=99.94 E-value=2.9e-26 Score=201.66 Aligned_cols=137 Identities=19% Similarity=0.241 Sum_probs=114.9
Q ss_pred EEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCCCeEEEEEEE
Q 035770 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEGSGTKGVLSS 166 (244)
Q Consensus 87 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~G~~~~ 166 (244)
|+++|.||||||++.|++||||+++||+|..|..|..+.++.|+|++|+|++.... ....+.|++|+.+.|.+++
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~~-----~~~~i~Y~~G~~~~G~~~~ 75 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLPG-----ATWSISYGDGSSASGIVYT 75 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecCC-----cEEEEEeCCCCeEEEEEEE
Confidence 89999999999999999999999999999999988777788899999999986531 2477889999877999999
Q ss_pred EEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCch---------HHhhhcc-cCCceEEec
Q 035770 167 ESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSI---------LRQLEPE-TNLRFSYCL 236 (244)
Q Consensus 167 D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~---------~~ql~~~-~~~~FSycL 236 (244)
|+|+|++. .++++.|||++...+..|. ....+||||||++.++. ..+|..+ ..+.||+||
T Consensus 76 D~v~ig~~-----~~~~~~fg~~~~~~~~~~~-----~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~Fs~~l 145 (278)
T cd06097 76 DTVSIGGV-----EVPNQAIELATAVSASFFS-----DTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPLFTADL 145 (278)
T ss_pred EEEEECCE-----EECCeEEEEEeecCccccc-----cccccceeeeccccccccccCCCCCHHHHHHHhccCceEEEEe
Confidence 99999987 8999999999987652232 35799999999987654 3344443 357999999
Q ss_pred CC
Q 035770 237 RL 238 (244)
Q Consensus 237 ~~ 238 (244)
.+
T Consensus 146 ~~ 147 (278)
T cd06097 146 RK 147 (278)
T ss_pred cC
Confidence 86
No 15
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=99.94 E-value=5.2e-26 Score=199.82 Aligned_cols=124 Identities=33% Similarity=0.635 Sum_probs=101.8
Q ss_pred ceEEEEEEecCCCceeeEEEeCCCCceEEeCC-CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCCCeEEEE
Q 035770 85 NIYITKISIGSTQFSTYLVVDTGSDDTWLQCK-GCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEGSGTKGV 163 (244)
Q Consensus 85 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~-~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~G~ 163 (244)
++|+++|.||||||++.|++||||+++||+|. +|..| .| .+.+.|+|++.+.|.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------~c------~~~i~Ygd~~~~~G~ 55 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------QC------DYEIEYADGGSSMGV 55 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------cC------ccEeEeCCCCceEEE
Confidence 47999999999999999999999999999994 78777 12 256889888888999
Q ss_pred EEEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCchHHhhhcc--cCCceEEecCC
Q 035770 164 LSSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSILRQLEPE--TNLRFSYCLRL 238 (244)
Q Consensus 164 ~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~~~ql~~~--~~~~FSycL~~ 238 (244)
+++|+|+|+..++. ..++++.|||+....+ .+. ......|||||||++++|+++||..+ ++++|||||++
T Consensus 56 ~~~D~v~~~~~~~~-~~~~~~~Fgc~~~~~~-~~~---~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~ 127 (273)
T cd05475 56 LVTDIFSLKLTNGS-RAKPRIAFGCGYDQQG-PLL---NPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSS 127 (273)
T ss_pred EEEEEEEEeecCCC-cccCCEEEEeeeccCC-ccc---CCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEEEccC
Confidence 99999999764332 2678899999987765 221 01357899999999999999999876 57889999986
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=99.94 E-value=7.7e-26 Score=211.21 Aligned_cols=149 Identities=20% Similarity=0.274 Sum_probs=118.6
Q ss_pred CCCCcccCCCCCCceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCce
Q 035770 72 LKPPVYPSPFANTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKL 151 (244)
Q Consensus 72 ~~~pl~~~~~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~ 151 (244)
...||.+ +.+.+|+++|.||||||++.|++||||+++||+|..|..+..+.++.|||++|+|++..+| .+.
T Consensus 127 ~~~~l~d---~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~~------~~~ 197 (450)
T PTZ00013 127 DVIELDD---VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDGT------KVD 197 (450)
T ss_pred Cceeeec---cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCCc------EEE
Confidence 3455554 4578999999999999999999999999999999999743334678999999999988774 477
Q ss_pred eeeCCCCeEEEEEEEEEEEECCCCCCceeeccEEEEEEEecCC--CccccCCCCCCCcceEEeeCCCCCc------hHHh
Q 035770 152 CVIKEGSGTKGVLSSESFTFPRDKNTSLTFANVTFGCGYDNQN--VSFGGHMGSDNIITGVFGLGAGQRS------ILRQ 223 (244)
Q Consensus 152 c~Y~~gs~~~G~~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g--~~f~~~~~~~~~~~GIlGLg~~~~S------~~~q 223 (244)
+.|++|+ +.|.+++|+|+|++. .++ ..|+++....+ ..|. ....|||||||++.++ ++.|
T Consensus 198 i~YG~Gs-v~G~~~~Dtv~iG~~-----~~~-~~f~~~~~~~~~~~~~~-----~~~~dGIlGLg~~~~s~~~~~p~~~~ 265 (450)
T PTZ00013 198 ITYGSGT-VKGFFSKDLVTLGHL-----SMP-YKFIEVTDTDDLEPIYS-----SSEFDGILGLGWKDLSIGSIDPIVVE 265 (450)
T ss_pred EEECCce-EEEEEEEEEEEECCE-----EEc-cEEEEEEecccccccee-----cccccceecccCCccccccCCCHHHH
Confidence 8999998 699999999999986 676 57888876542 1232 2468999999998765 4567
Q ss_pred hhcc--c-CCceEEecCCCCC
Q 035770 224 LEPE--T-NLRFSYCLRLYPT 241 (244)
Q Consensus 224 l~~~--~-~~~FSycL~~~~~ 241 (244)
|+.+ + .++||+||++...
T Consensus 266 L~~qg~I~~~vFS~~L~~~~~ 286 (450)
T PTZ00013 266 LKNQNKIDNALFTFYLPVHDV 286 (450)
T ss_pred HHhccCcCCcEEEEEecCCCC
Confidence 7765 3 6789999987543
No 17
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=99.94 E-value=1e-25 Score=202.53 Aligned_cols=142 Identities=20% Similarity=0.285 Sum_probs=113.5
Q ss_pred CCCCceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCC--CCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCCC
Q 035770 81 FANTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSC--FPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEGS 158 (244)
Q Consensus 81 ~~~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C--~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs 158 (244)
++.+.+|+++|.||||+|++.|++||||+++||+|..|..| ....++.|+|++|+||+...| .+...|++|+
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~------~~~~~Yg~g~ 76 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGT------EFTIHYASGT 76 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCE------EEEEEeCCce
Confidence 46789999999999999999999999999999998888642 123678999999999998764 3677899997
Q ss_pred eEEEEEEEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCc------hHHhhhcc---cC
Q 035770 159 GTKGVLSSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRS------ILRQLEPE---TN 229 (244)
Q Consensus 159 ~~~G~~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S------~~~ql~~~---~~ 229 (244)
+.|.+++|+|+|++. .+ ++.|||+.......|. ....+||||||++..+ +..+|..+ ..
T Consensus 77 -~~G~~~~D~v~~g~~-----~~-~~~fg~~~~~~~~~~~-----~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~ 144 (326)
T cd05487 77 -VKGFLSQDIVTVGGI-----PV-TQMFGEVTALPAIPFM-----LAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKE 144 (326)
T ss_pred -EEEEEeeeEEEECCE-----Ee-eEEEEEEEeccCCccc-----eeecceEEecCChhhcccCCCCHHHHHHhcCCCCC
Confidence 699999999999986 56 4789999876432332 2468999999998765 34455554 37
Q ss_pred CceEEecCCCC
Q 035770 230 LRFSYCLRLYP 240 (244)
Q Consensus 230 ~~FSycL~~~~ 240 (244)
++||+||++.+
T Consensus 145 ~~FS~~L~~~~ 155 (326)
T cd05487 145 DVFSVYYSRDS 155 (326)
T ss_pred CEEEEEEeCCC
Confidence 89999998753
No 18
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=99.93 E-value=6.2e-26 Score=201.36 Aligned_cols=114 Identities=34% Similarity=0.638 Sum_probs=100.2
Q ss_pred eEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCCCeEEEEEE
Q 035770 86 IYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEGSGTKGVLS 165 (244)
Q Consensus 86 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~G~~~ 165 (244)
+|+++|.||||||++.|++||||+++||+|.+| | .+.+.|.+|+.++|+++
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c-----------------------~------~~~i~Yg~Gs~~~G~~~ 51 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC-----------------------C------LYQVSYGDGSYTTGDLA 51 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------C------eeeeEeCCCceEEEEEE
Confidence 599999999999999999999999999998776 1 25688999998899999
Q ss_pred EEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCchHHhhhcccCCceEEecCCCC
Q 035770 166 SESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSILRQLEPETNLRFSYCLRLYP 240 (244)
Q Consensus 166 ~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~~~ql~~~~~~~FSycL~~~~ 240 (244)
+|+|+|++.. .++++.|||+....+ .| ...+||||||++.+|++.|+..+++++|||||++..
T Consensus 52 ~D~v~ig~~~----~~~~~~Fg~~~~~~~-~~-------~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~ 114 (299)
T cd05472 52 TDTLTLGSSD----VVPGFAFGCGHDNEG-LF-------GGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRS 114 (299)
T ss_pred EEEEEeCCCC----ccCCEEEECCccCCC-cc-------CCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCC
Confidence 9999998752 578999999998876 34 368999999999999999998777899999998754
No 19
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.92 E-value=1.4e-24 Score=164.85 Aligned_cols=108 Identities=26% Similarity=0.461 Sum_probs=92.7
Q ss_pred EEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCCCceeeeCCCCeEEEEEEEE
Q 035770 89 TKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSF-PVKESKTYRGLACDHPLCVPKLCVIKEGSGTKGVLSSE 167 (244)
Q Consensus 89 ~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f-~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~G~~~~D 167 (244)
++|.||||||++.|++||||+++||+|..|..|..+.++.| +|++|++++...| ...+.|.+|+. .|.++.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~~------~~~~~Y~~g~~-~g~~~~D 73 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNGC------TFSITYGTGSL-SGGLSTD 73 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCCc------EEEEEeCCCeE-EEEEEEE
Confidence 47999999999999999999999999999998876667777 9999999987764 36778989875 7999999
Q ss_pred EEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEee
Q 035770 168 SFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGL 213 (244)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGL 213 (244)
+|+|++. .++++.|||++...+..|. ....+|||||
T Consensus 74 ~v~ig~~-----~~~~~~fg~~~~~~~~~~~-----~~~~~GilGL 109 (109)
T cd05470 74 TVSIGDI-----EVVGQAFGCATDEPGATFL-----PALFDGILGL 109 (109)
T ss_pred EEEECCE-----EECCEEEEEEEecCCcccc-----ccccccccCC
Confidence 9999887 7999999999998772222 3578999997
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=99.92 E-value=3.9e-24 Score=186.57 Aligned_cols=135 Identities=29% Similarity=0.491 Sum_probs=115.1
Q ss_pred EEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCC--CCCCCCCcccccCCCCCCCCCceeeeCCCCeEEEEE
Q 035770 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGS--FPVKESKTYRGLACDHPLCVPKLCVIKEGSGTKGVL 164 (244)
Q Consensus 87 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~--f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~G~~ 164 (244)
|+++|.||||+|++.|++||||+++||+|..|..|..+.... |++..|+++....| ...+.|.+|+. .|.+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~~------~~~~~Y~~g~~-~g~~ 73 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTGC------TFSITYGDGSV-TGGL 73 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCCC------EEEEEECCCeE-EEEE
Confidence 789999999999999999999999999999999876555554 78888888766553 36778888764 8999
Q ss_pred EEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCC------CchHHhhhcc---cCCceEEe
Q 035770 165 SSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQ------RSILRQLEPE---TNLRFSYC 235 (244)
Q Consensus 165 ~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~------~S~~~ql~~~---~~~~FSyc 235 (244)
++|+|+|++. .++++.|||++...+ .+. ....+||||||++. .+++.||..+ ..++||+|
T Consensus 74 ~~D~v~~~~~-----~~~~~~fg~~~~~~~-~~~-----~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~ 142 (283)
T cd05471 74 GTDTVTIGGL-----TIPNQTFGCATSESG-DFS-----SSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFY 142 (283)
T ss_pred EEeEEEECCE-----EEeceEEEEEeccCC-ccc-----ccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEE
Confidence 9999999987 789999999998865 232 36799999999998 7899999876 37999999
Q ss_pred cCCC
Q 035770 236 LRLY 239 (244)
Q Consensus 236 L~~~ 239 (244)
|.+.
T Consensus 143 l~~~ 146 (283)
T cd05471 143 LGRD 146 (283)
T ss_pred EcCC
Confidence 9985
No 21
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=99.92 E-value=1.2e-24 Score=198.61 Aligned_cols=128 Identities=23% Similarity=0.390 Sum_probs=103.0
Q ss_pred ecCCCce-eeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCC--------------------ce
Q 035770 93 IGSTQFS-TYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVP--------------------KL 151 (244)
Q Consensus 93 iGtP~q~-~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~--------------------~~ 151 (244)
+|||-.+ +.|++||||+++||||.+ .+|+||+.++|+++.|+. ..
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 5788777 999999999999999975 357799999999888853 23
Q ss_pred eee-----CCCCeEEEEEEEEEEEECCCCCCc---eeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCchHHh
Q 035770 152 CVI-----KEGSGTKGVLSSESFTFPRDKNTS---LTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSILRQ 223 (244)
Q Consensus 152 c~Y-----~~gs~~~G~~~~D~l~~~~~~~~~---~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~~~q 223 (244)
|.| .+|+.+.|.+++|+|+|+..++.. +.++++.|||++......+ ...+|||||||++++|+++|
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~------~~~~dGIlGLg~~~lSl~sq 141 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL------PPGAQGVAGLGRSPLSLPAQ 141 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC------ccccccccccCCCccchHHH
Confidence 654 378888999999999998755432 4789999999988642122 24589999999999999999
Q ss_pred hhccc--CCceEEecCCCC
Q 035770 224 LEPET--NLRFSYCLRLYP 240 (244)
Q Consensus 224 l~~~~--~~~FSycL~~~~ 240 (244)
|..+. .++|||||+++.
T Consensus 142 l~~~~~~~~~FS~CL~~~~ 160 (362)
T cd05489 142 LASAFGVARKFALCLPSSP 160 (362)
T ss_pred hhhhcCCCcceEEEeCCCC
Confidence 98763 489999999764
No 22
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=99.90 E-value=2.6e-23 Score=189.65 Aligned_cols=133 Identities=21% Similarity=0.248 Sum_probs=100.8
Q ss_pred ceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCCCeEEEEE
Q 035770 85 NIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEGSGTKGVL 164 (244)
Q Consensus 85 ~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~G~~ 164 (244)
..|+++|.||||+|+|.|+|||||+++||+|.+|.. .++.|||++|+||+..+| .+.+.|++|+. .|.+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~----~~~~f~~~~SsT~~~~~~------~~~i~Yg~Gs~-~G~~ 70 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPF----IHTYFHRELSSTYRDLGK------GVTVPYTQGSW-EGEL 70 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCcc----ccccCCchhCcCcccCCc------eEEEEECcceE-EEEE
Confidence 469999999999999999999999999999988743 467899999999998885 47889999975 8999
Q ss_pred EEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCc--------hHHhhhcc--cCCceEE
Q 035770 165 SSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRS--------ILRQLEPE--TNLRFSY 234 (244)
Q Consensus 165 ~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S--------~~~ql~~~--~~~~FSy 234 (244)
++|+|+|++... ..-.+.|++.....+ .|. .....|||||||++.++ +..+|.++ +.++|||
T Consensus 71 ~~D~v~ig~~~~---~~~~~~~~~~~~~~~-~~~----~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~~~FS~ 142 (364)
T cd05473 71 GTDLVSIPKGPN---VTFRANIAAITESEN-FFL----NGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIPDVFSL 142 (364)
T ss_pred EEEEEEECCCCc---cceEEeeEEEecccc-cee----cccccceeeeecccccccCCCCCCCHHHHHHhccCCccceEE
Confidence 999999986311 111234566655544 231 01357999999998774 23345444 4679999
Q ss_pred ec
Q 035770 235 CL 236 (244)
Q Consensus 235 cL 236 (244)
+|
T Consensus 143 ~l 144 (364)
T cd05473 143 QM 144 (364)
T ss_pred Ee
Confidence 66
No 23
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=99.90 E-value=3.8e-23 Score=180.70 Aligned_cols=111 Identities=42% Similarity=0.715 Sum_probs=96.1
Q ss_pred eEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCCCeEEEEEE
Q 035770 86 IYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEGSGTKGVLS 165 (244)
Q Consensus 86 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~G~~~ 165 (244)
+|+++|.||||||++.|++||||+++||+| | .+...|.||+.+.|+++
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----~---------------------------~~~~~Y~dg~~~~G~~~ 48 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----C---------------------------SYEYSYGDGSSTSGVLA 48 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----C---------------------------ceEeEeCCCceeeeeEE
Confidence 599999999999999999999999999987 2 14577998888899999
Q ss_pred EEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCCchHHhhhcccCCceEEecCCC
Q 035770 166 SESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQRSILRQLEPETNLRFSYCLRLY 239 (244)
Q Consensus 166 ~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~S~~~ql~~~~~~~FSycL~~~ 239 (244)
+|+|+|++.+ ..++++.|||+....+ +. ....+||||||+..+|++.||+.+- ++|||||++.
T Consensus 49 ~D~v~~g~~~---~~~~~~~Fg~~~~~~~--~~-----~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~~~ 111 (265)
T cd05476 49 TETFTFGDSS---VSVPNVAFGCGTDNEG--GS-----FGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLVPH 111 (265)
T ss_pred EEEEEecCCC---CccCCEEEEecccccC--Cc-----cCCCCEEEECCCCcccHHHHhhccc-CeeEEEccCC
Confidence 9999999862 2578999999998865 32 3679999999999999999998654 7999999975
No 24
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=99.87 E-value=3.3e-22 Score=177.45 Aligned_cols=138 Identities=28% Similarity=0.433 Sum_probs=113.5
Q ss_pred eEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCC-CCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCCCeEEEEE
Q 035770 86 IYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSC-FPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEGSGTKGVL 164 (244)
Q Consensus 86 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C-~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~G~~ 164 (244)
+|+++|.||||+|++.|++||||+.+||++..|..| .......|++.+|+|++... ......|++|+ +.|.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~------~~~~~~y~~g~-~~G~~ 73 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG------KPFSISYGDGS-VSGNL 73 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE------EEEEEEETTEE-EEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce------eeeeeeccCcc-ccccc
Confidence 699999999999999999999999999999988866 33467899999999998776 34678899998 79999
Q ss_pred EEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCC-------CchHHhhhcc---cCCceEE
Q 035770 165 SSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQ-------RSILRQLEPE---TNLRFSY 234 (244)
Q Consensus 165 ~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~-------~S~~~ql~~~---~~~~FSy 234 (244)
+.|+|.|++. .+.++.||.+....+..+. ....+||||||++. .+++.||..+ -.++||+
T Consensus 74 ~~D~v~ig~~-----~~~~~~f~~~~~~~~~~~~-----~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl 143 (317)
T PF00026_consen 74 VSDTVSIGGL-----TIPNQTFGLADSYSGDPFS-----PIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSL 143 (317)
T ss_dssp EEEEEEETTE-----EEEEEEEEEEEEEESHHHH-----HSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEE
T ss_pred ccceEeeeec-----cccccceeccccccccccc-----cccccccccccCCcccccccCCcceecchhhccccccccce
Confidence 9999999987 8889999999986542222 36789999999753 4677788776 3788999
Q ss_pred ecCCCC
Q 035770 235 CLRLYP 240 (244)
Q Consensus 235 cL~~~~ 240 (244)
+|.+..
T Consensus 144 ~l~~~~ 149 (317)
T PF00026_consen 144 YLNPSD 149 (317)
T ss_dssp EEESTT
T ss_pred eeeecc
Confidence 998865
No 25
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=99.85 E-value=1e-20 Score=166.98 Aligned_cols=106 Identities=20% Similarity=0.367 Sum_probs=92.3
Q ss_pred eEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCCCeEEEEEE
Q 035770 86 IYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEGSGTKGVLS 165 (244)
Q Consensus 86 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~G~~~ 165 (244)
.|+++|.||||+|++.|++||||+++||+ .+.+.|.+|+.+.|.++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~----------------------------------~~~~~Y~~g~~~~G~~~ 47 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP----------------------------------DFSISYGDGTSASGTWG 47 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee----------------------------------eeEEEeccCCcEEEEEE
Confidence 59999999999999999999999999998 14578999877899999
Q ss_pred EEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCCCCC-----------chHHhhhcc--c-CCc
Q 035770 166 SESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGAGQR-----------SILRQLEPE--T-NLR 231 (244)
Q Consensus 166 ~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~~~~-----------S~~~ql~~~--~-~~~ 231 (244)
+|+|+|++. .++++.|||++... ..+||||||++.. +++.||..+ + ++.
T Consensus 48 ~D~v~~g~~-----~~~~~~fg~~~~~~------------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~ 110 (295)
T cd05474 48 TDTVSIGGA-----TVKNLQFAVANSTS------------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNA 110 (295)
T ss_pred EEEEEECCe-----EecceEEEEEecCC------------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceE
Confidence 999999987 78999999998842 3689999999887 688999876 3 578
Q ss_pred eEEecCCCCCC
Q 035770 232 FSYCLRLYPTT 242 (244)
Q Consensus 232 FSycL~~~~~~ 242 (244)
||+||++.++.
T Consensus 111 Fsl~l~~~~~~ 121 (295)
T cd05474 111 YSLYLNDLDAS 121 (295)
T ss_pred EEEEeCCCCCC
Confidence 99999986443
No 26
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.93 E-value=6.5e-05 Score=54.61 Aligned_cols=93 Identities=13% Similarity=0.096 Sum_probs=60.5
Q ss_pred eEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCCCeEEEEEE
Q 035770 86 IYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEGSGTKGVLS 165 (244)
Q Consensus 86 ~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~G~~~ 165 (244)
.|++++.|+ .+++.+++|||++.+|+.-.....+. . ...+. ........+|........
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~---~-~~~~~---------------~~~~~~~~~G~~~~~~~~ 60 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG---L-PLTLG---------------GKVTVQTANGRVRAARVR 60 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC---C-CccCC---------------CcEEEEecCCCccceEEE
Confidence 589999999 69999999999999998653211111 0 00000 112233346665556666
Q ss_pred EEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCC
Q 035770 166 SESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGA 215 (244)
Q Consensus 166 ~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~ 215 (244)
.+.+++++. .++++.+....... ...+||||+.+
T Consensus 61 ~~~i~ig~~-----~~~~~~~~v~d~~~-----------~~~~gIlG~d~ 94 (96)
T cd05483 61 LDSLQIGGI-----TLRNVPAVVLPGDA-----------LGVDGLLGMDF 94 (96)
T ss_pred cceEEECCc-----EEeccEEEEeCCcc-----------cCCceEeChHH
Confidence 888999987 78877776554322 14799999864
No 27
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.69 E-value=0.043 Score=42.43 Aligned_cols=94 Identities=10% Similarity=0.129 Sum_probs=59.1
Q ss_pred CCceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCceeee--CCCCeE
Q 035770 83 NTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVI--KEGSGT 160 (244)
Q Consensus 83 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y--~~gs~~ 160 (244)
.++.|++++.|. .+++.+++|||++.+-+...--..- . .++..- . ....+ ..|...
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L-----g-l~~~~~-~-------------~~~~~~ta~G~~~ 65 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL-----G-LDLNRL-G-------------YTVTVSTANGQIK 65 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc-----C-CCcccC-C-------------ceEEEEeCCCcEE
Confidence 378999999996 4799999999999987754311110 0 111110 0 11222 155554
Q ss_pred EEEEEEEEEEECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCC
Q 035770 161 KGVLSSESFTFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGA 215 (244)
Q Consensus 161 ~G~~~~D~l~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~ 215 (244)
.....-|.+.+|+. .+.++.+.+.... ...+|+||+.+
T Consensus 66 ~~~~~l~~l~iG~~-----~~~nv~~~v~~~~------------~~~~~LLGm~f 103 (121)
T TIGR02281 66 AARVTLDRVAIGGI-----VVNDVDAMVAEGG------------ALSESLLGMSF 103 (121)
T ss_pred EEEEEeCEEEECCE-----EEeCcEEEEeCCC------------cCCceEcCHHH
Confidence 55568889999997 8888887665321 12479999753
No 28
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.04 E-value=0.17 Score=35.82 Aligned_cols=89 Identities=18% Similarity=0.128 Sum_probs=50.6
Q ss_pred EEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeCCCCeEEEEEEEEEE
Q 035770 90 KISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIKEGSGTKGVLSSESF 169 (244)
Q Consensus 90 ~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~~gs~~~G~~~~D~l 169 (244)
++.|+ .+++.+++|||++.+.+.-.-..... ..+..... .....-.+|........-+.+
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~~~~------------~~~~~~~~g~~~~~~~~~~~i 61 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISRSLAKKLG------LKPRPKSV------------PISVSGAGGSVTVYRGRVDSI 61 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECHHHHHHcC------CCCcCCce------------eEEEEeCCCCEEEEEEEEEEE
Confidence 45665 47999999999998777433211110 01111000 001111244455566777789
Q ss_pred EECCCCCCceeeccEEEEEEEecCCCccccCCCCCCCcceEEeeCC
Q 035770 170 TFPRDKNTSLTFANVTFGCGYDNQNVSFGGHMGSDNIITGVFGLGA 215 (244)
Q Consensus 170 ~~~~~~~~~~~~~~~~fGc~~~~~g~~f~~~~~~~~~~~GIlGLg~ 215 (244)
++++. .+.++.|-... . ....+||||+-+
T Consensus 62 ~ig~~-----~~~~~~~~v~~--~----------~~~~~~iLG~df 90 (90)
T PF13650_consen 62 TIGGI-----TLKNVPFLVVD--L----------GDPIDGILGMDF 90 (90)
T ss_pred EECCE-----EEEeEEEEEEC--C----------CCCCEEEeCCcC
Confidence 99886 77777765544 1 146799999753
No 29
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=92.33 E-value=0.84 Score=35.20 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=26.4
Q ss_pred CceEEEEEEecCCCceeeEEEeCCCCceEEeCC
Q 035770 84 TNIYITKISIGSTQFSTYLVVDTGSDDTWLQCK 116 (244)
Q Consensus 84 ~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 116 (244)
...+++++.|+ .+++.+++|||++..++.-.
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 56789999998 57899999999999988543
No 30
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=88.17 E-value=0.6 Score=33.71 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=23.4
Q ss_pred EEEEEEecCCCceeeEEEeCCCCceEEeCC
Q 035770 87 YITKISIGSTQFSTYLVVDTGSDDTWLQCK 116 (244)
Q Consensus 87 Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 116 (244)
|++++.|+ .+++.+.+||||+..++.-.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57788887 48999999999999998654
No 31
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=78.60 E-value=4.3 Score=28.08 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=27.9
Q ss_pred CCceEEEEEEecCCCceeeEEEeCCCCceEEeCCC
Q 035770 83 NTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKG 117 (244)
Q Consensus 83 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~ 117 (244)
..+.+++++.||- +.+.+++|||++...++..-
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~ 37 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISESL 37 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHHH
Confidence 3578999999996 99999999999988776543
No 32
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=72.24 E-value=5.8 Score=28.72 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=21.0
Q ss_pred EEEEEecCCCceeeEEEeCCCCceEEeCC
Q 035770 88 ITKISIGSTQFSTYLVVDTGSDDTWLQCK 116 (244)
Q Consensus 88 ~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~ 116 (244)
+.+|.+.. +++.+++|||++.+-++..
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccc
Confidence 45566653 7999999999999888654
No 33
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=61.41 E-value=11 Score=27.35 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=19.1
Q ss_pred EEecCCCceeeEEEeCCCCceEEeC
Q 035770 91 ISIGSTQFSTYLVVDTGSDDTWLQC 115 (244)
Q Consensus 91 v~iGtP~q~~~v~~DTGS~~~Wv~c 115 (244)
+.|+ .|.+.+.+|||.+++-+.-
T Consensus 3 ~~i~--g~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 3 LYIN--GKLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEC--CEEEEEEEccCCCCeEEcc
Confidence 4555 6999999999999998864
No 34
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=49.52 E-value=16 Score=25.96 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=16.9
Q ss_pred CceeeEEEeCCCCceEEeCC
Q 035770 97 QFSTYLVVDTGSDDTWLQCK 116 (244)
Q Consensus 97 ~q~~~v~~DTGS~~~Wv~c~ 116 (244)
.+++.+++|||.+.+-+.-.
T Consensus 7 G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 7 GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred CEEEEEEEECCCCeEEECHH
Confidence 47899999999999888643
No 35
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=42.19 E-value=35 Score=28.02 Aligned_cols=28 Identities=11% Similarity=0.318 Sum_probs=21.6
Q ss_pred EEEEEecCCCceeeEEEeCCCCceEEeC
Q 035770 88 ITKISIGSTQFSTYLVVDTGSDDTWLQC 115 (244)
Q Consensus 88 ~~~v~iGtP~q~~~v~~DTGS~~~Wv~c 115 (244)
...+.+++-..++.+.|||||....+..
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeeh
Confidence 4455666667899999999999877754
No 36
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.02 E-value=24 Score=26.07 Aligned_cols=13 Identities=31% Similarity=0.375 Sum_probs=9.3
Q ss_pred CcchhHHHHHHHH
Q 035770 1 MTSKQFICSIYIY 13 (244)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (244)
|-||.+|++.++|
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 8888887775543
No 37
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=27.53 E-value=69 Score=27.67 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=22.8
Q ss_pred ceEEEE---EEecC---CCceeeEEEeCCCCceEEeCC
Q 035770 85 NIYITK---ISIGS---TQFSTYLVVDTGSDDTWLQCK 116 (244)
Q Consensus 85 ~~Y~~~---v~iGt---P~q~~~v~~DTGS~~~Wv~c~ 116 (244)
..|.++ |+||. +.....+++|||+.++.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456555 57763 234567999999999999864
No 38
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=26.78 E-value=98 Score=26.35 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=48.1
Q ss_pred CCceEEEEEEecCCCceeeEEEeCCCCceEEeCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCceeeeC--CCCeE
Q 035770 83 NTNIYITKISIGSTQFSTYLVVDTGSDDTWLQCKGCTSCFPINGGSFPVKESKTYRGLACDHPLCVPKLCVIK--EGSGT 160 (244)
Q Consensus 83 ~~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c~~c~~C~~~~~~~f~p~~SsT~~~~~C~~~~C~~~~c~Y~--~gs~~ 160 (244)
.++.|.++..|- .|++..++|||-+.+-++-+.-.. --||.... . .+..+. .|...
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R------lGid~~~l-~-------------y~~~v~TANG~~~ 159 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR------LGIDLNSL-D-------------YTITVSTANGRAR 159 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH------hCCCcccc-C-------------CceEEEccCCccc
Confidence 578999999986 599999999999887775432110 01333321 1 223332 56655
Q ss_pred EEEEEEEEEEECCCCCCceeeccE
Q 035770 161 KGVLSSESFTFPRDKNTSLTFANV 184 (244)
Q Consensus 161 ~G~~~~D~l~~~~~~~~~~~~~~~ 184 (244)
.--+--|.|.||+. .++++
T Consensus 160 AA~V~Ld~v~IG~I-----~~~nV 178 (215)
T COG3577 160 AAPVTLDRVQIGGI-----RVKNV 178 (215)
T ss_pred cceEEeeeEEEccE-----EEcCc
Confidence 56677889999886 55554
No 39
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=26.47 E-value=83 Score=23.39 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=17.6
Q ss_pred EEEEecCCC----ceeeEEEeCCCCce
Q 035770 89 TKISIGSTQ----FSTYLVVDTGSDDT 111 (244)
Q Consensus 89 ~~v~iGtP~----q~~~v~~DTGS~~~ 111 (244)
+++.+..|. -++.+++|||-+..
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~ 28 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGF 28 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeE
Confidence 567787873 36789999999865
No 40
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=26.07 E-value=51 Score=22.28 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=13.8
Q ss_pred CcchhHHHHHHHHhhhhcc
Q 035770 1 MTSKQFICSIYIYVLTLTS 19 (244)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (244)
|-+|.+++.+++..+.+..
T Consensus 1 MA~Kl~vialLC~aLva~v 19 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIV 19 (65)
T ss_pred CcchhhHHHHHHHHHHHHH
Confidence 7888888877776655544
No 41
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=23.35 E-value=1.4e+02 Score=23.12 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=20.8
Q ss_pred CceEEEEEEecCCCceeeEEEeCCCCceEEeC
Q 035770 84 TNIYITKISIGSTQFSTYLVVDTGSDDTWLQC 115 (244)
Q Consensus 84 ~~~Y~~~v~iGtP~q~~~v~~DTGS~~~Wv~c 115 (244)
...+|+++.|+- +++.+.+|||...+-+.-
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims~ 51 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMSK 51 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEEH
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccCH
Confidence 456899999984 899999999998877653
No 42
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=22.10 E-value=65 Score=27.79 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=22.2
Q ss_pred ceEEEE---EEecC----CCceeeEEEeCCCCceEEeCC
Q 035770 85 NIYITK---ISIGS----TQFSTYLVVDTGSDDTWLQCK 116 (244)
Q Consensus 85 ~~Y~~~---v~iGt----P~q~~~v~~DTGS~~~Wv~c~ 116 (244)
..|.++ |.||. ......+++|||+.++++|-.
T Consensus 177 ~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 177 GFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDA 215 (278)
T ss_pred cEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHH
Confidence 345444 45653 245678999999999998754
No 43
>PLN03146 aspartyl protease family protein; Provisional
Probab=21.36 E-value=1.3e+02 Score=28.24 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=14.0
Q ss_pred eEEEeCCCCceEEeCC
Q 035770 101 YLVVDTGSDDTWLQCK 116 (244)
Q Consensus 101 ~v~~DTGS~~~Wv~c~ 116 (244)
.+|||||+.+++++-.
T Consensus 309 ~~iiDSGTt~t~Lp~~ 324 (431)
T PLN03146 309 NIIIDSGTTLTLLPSD 324 (431)
T ss_pred cEEEeCCccceecCHH
Confidence 6899999999999754
No 44
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=20.71 E-value=65 Score=27.32 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=24.4
Q ss_pred CceEEEE---EEecC-----CCceeeEEEeCCCCceEEeCCC
Q 035770 84 TNIYITK---ISIGS-----TQFSTYLVVDTGSDDTWLQCKG 117 (244)
Q Consensus 84 ~~~Y~~~---v~iGt-----P~q~~~v~~DTGS~~~Wv~c~~ 117 (244)
...|.+. |.+|. ......+++|||+..+|+|-.-
T Consensus 179 ~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~ 220 (283)
T cd05471 179 PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSV 220 (283)
T ss_pred CCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHH
Confidence 3455554 45654 3467899999999999998653
No 45
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=20.47 E-value=90 Score=22.84 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=16.6
Q ss_pred ceeeEEEeCCCCceEEeCCCC
Q 035770 98 FSTYLVVDTGSDDTWLQCKGC 118 (244)
Q Consensus 98 q~~~v~~DTGS~~~Wv~c~~c 118 (244)
......+|||+...-+|...+
T Consensus 8 s~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CCcEEEEeCCCceEeeccccc
Confidence 356788999999999986543
No 46
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=20.22 E-value=84 Score=27.94 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=22.4
Q ss_pred ceEEEE---EEecCC------CceeeEEEeCCCCceEEeCC
Q 035770 85 NIYITK---ISIGST------QFSTYLVVDTGSDDTWLQCK 116 (244)
Q Consensus 85 ~~Y~~~---v~iGtP------~q~~~v~~DTGS~~~Wv~c~ 116 (244)
..|.++ |.||.. .....+++|||+.++++|..
T Consensus 208 ~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~~ 248 (326)
T cd06096 208 YYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPED 248 (326)
T ss_pred ceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCHH
Confidence 445554 466643 24567899999999999754
Done!