BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035774
(357 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225435171|ref|XP_002281874.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Vitis vinifera]
Length = 439
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 256/354 (72%), Positives = 289/354 (81%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANKLISEM LP SIANIFAARNITTAK+ALSLTE ELM+LLDV ++ V SA+A +SEIV
Sbjct: 1 MANKLISEMGLPTSIANIFAARNITTAKEALSLTEFELMELLDVGMARVTSAVAHISEIV 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
PP QTAL LMEQR E++ GHLPTRLKGLD AL GG+PFGV+TELVGP G GKTQFCL
Sbjct: 61 SPPTQTALSLMEQRVQNEYMAGHLPTRLKGLDEALGGGIPFGVLTELVGPPGIGKTQFCL 120
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KLSLLA+LPA YGGLDG VIYID ES F+SRRMIE+G+ SFPEIFH +GMA+EMAGRILV
Sbjct: 121 KLSLLASLPASYGGLDGRVIYIDAESKFSSRRMIEIGSKSFPEIFHVEGMAKEMAGRILV 180
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240
L+PTSLSEFTESL+ IK+SLLQN VKLLVIDSM ALV G ++Q QH L WHIS + S
Sbjct: 181 LRPTSLSEFTESLQHIKISLLQNHVKLLVIDSMAALVTGEYDQGPTRQHSLGWHISFVKS 240
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
+AEFSRIPIVVTNQVR QSHD + Y FQV+ + D TR+ SH+VA LG HWAHAVT
Sbjct: 241 VAEFSRIPIVVTNQVRSQSHDGTSQYSFQVESRGETVDDHTRFDSHLVAALGIHWAHAVT 300
Query: 301 IRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNL 354
IRLVLEAK+GQRF+ V KSP SPPLAF F I PSGISLL D+G EM P+ +
Sbjct: 301 IRLVLEAKAGQRFLKVAKSPISPPLAFPFNITPSGISLLNDEGIEMKGPQISTI 354
>gi|297746183|emb|CBI16239.3| unnamed protein product [Vitis vinifera]
Length = 371
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 252/354 (71%), Positives = 285/354 (80%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANKLISEM LP SIANIFAARNITTAK+ALSLTE ELM+LLDV ++ V SA+A +SEIV
Sbjct: 1 MANKLISEMGLPTSIANIFAARNITTAKEALSLTEFELMELLDVGMARVTSAVAHISEIV 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
PP QTAL LMEQR E++ GHLPTRLKGLD AL GG+PFGV+TELVGP G GKTQFCL
Sbjct: 61 SPPTQTALSLMEQRVQNEYMAGHLPTRLKGLDEALGGGIPFGVLTELVGPPGIGKTQFCL 120
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KLSLLA+LPA YGGLDG VIYID ES F+SRRMIE+G+ SFPEIFH +GMA+E ILV
Sbjct: 121 KLSLLASLPASYGGLDGRVIYIDAESKFSSRRMIEIGSKSFPEIFHVEGMAKEACPLILV 180
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240
L+PTSLSEFTESL+ IK+SLLQN VKLLVIDSM ALV G ++Q QH L WHIS + S
Sbjct: 181 LRPTSLSEFTESLQHIKISLLQNHVKLLVIDSMAALVTGEYDQGPTRQHSLGWHISFVKS 240
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
+AEFSRIPIVVTNQVR QSHD + Y FQV+ + D TR+ SH+VA LG HWAHAVT
Sbjct: 241 VAEFSRIPIVVTNQVRSQSHDGTSQYSFQVESRGETVDDHTRFDSHLVAALGIHWAHAVT 300
Query: 301 IRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNL 354
IRLVLEAK+GQRF+ V KSP SPPLAF F I PSGISLL D+G EM P+ +
Sbjct: 301 IRLVLEAKAGQRFLKVAKSPISPPLAFPFNITPSGISLLNDEGIEMKGPQISTI 354
>gi|356558427|ref|XP_003547508.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Glycine max]
Length = 378
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 244/350 (69%), Positives = 275/350 (78%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANKLI++M LPKSI NIF ARNI TAKDALS TE ELM+LLDV EV SA+A VSE+V
Sbjct: 1 MANKLINQMGLPKSIVNIFTARNIITAKDALSHTEFELMELLDVGKEEVTSAMAHVSEVV 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
CPP QTALLL+EQR E L GHL TRLKGLD ALCGG+PFGV+TELVGPAG GKTQFCL
Sbjct: 61 CPPCQTALLLLEQRVLNESLAGHLSTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCL 120
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KLSLLA+LP + GGLDG VIYIDVES F S+R+IE+G +SFPEIF KGMAQEMAGRIL+
Sbjct: 121 KLSLLASLPTNCGGLDGRVIYIDVESKFRSKRLIEIGINSFPEIFLKKGMAQEMAGRILI 180
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240
L PTSLSEF ESL +I+VSLLQ QVKLL+IDSM ALV G H+ A Q L WH+S I S
Sbjct: 181 LHPTSLSEFAESLHQIRVSLLQQQVKLLIIDSMAALVLGEHDSEASRQQALGWHVSFIKS 240
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
LAEFSRIP+V+TNQVR Q DES +Y FQ Q I + Y SH+VA LG +WAHAVT
Sbjct: 241 LAEFSRIPVVLTNQVRSQIGDESRMYSFQAQSHSIIKDNPATYDSHLVAALGINWAHAVT 300
Query: 301 IRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPE 350
IRLVLEA+SGQRF+ + KSP S PLAF F I SG+ LL D+G EM PE
Sbjct: 301 IRLVLEARSGQRFIKLAKSPISAPLAFPFKITSSGLVLLDDEGIEMKGPE 350
>gi|449463635|ref|XP_004149537.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Cucumis
sativus]
Length = 371
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/346 (69%), Positives = 278/346 (80%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MAN+LI++M LP+SIANIFAARNI TAK+ALSLTE ELM+LLDV LSEV SA+A +SEI
Sbjct: 1 MANRLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHISEIA 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
PP+QTAL LMEQR EHL GHL T LKGLD AL GG+PFGV+TELVGPAG GKTQFCL
Sbjct: 61 SPPYQTALSLMEQRLQNEHLAGHLSTCLKGLDEALFGGIPFGVLTELVGPAGIGKTQFCL 120
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KLS LAALP YGGLDG VIYIDVES F+S+RMIE+G SFP++F+ K MAQEMAGRILV
Sbjct: 121 KLSFLAALPPSYGGLDGRVIYIDVESKFSSKRMIEIGMRSFPDVFNKKDMAQEMAGRILV 180
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240
L+P SLSEFTESL KIKVSLL+ +VKL++IDSM AL+ G +E AP QH L WHIS I S
Sbjct: 181 LRPASLSEFTESLHKIKVSLLEQEVKLVIIDSMAALITGEYELGAPKQHSLGWHISFIKS 240
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
+AEF+RIP+VVTNQVR ++ E Y FQ + + Y SHIVA LG HWAH+VT
Sbjct: 241 IAEFARIPVVVTNQVRSRNRKEVSHYSFQGWSRSECQEYSSGYGSHIVAALGVHWAHSVT 300
Query: 301 IRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEM 346
IRLVLEAKSGQRF+ + KSP SPPLAF FTI SGISLL+++G E+
Sbjct: 301 IRLVLEAKSGQRFIKLAKSPMSPPLAFPFTITASGISLLSNNGEEL 346
>gi|449527239|ref|XP_004170620.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Cucumis
sativus]
Length = 379
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 237/354 (66%), Positives = 277/354 (78%), Gaps = 8/354 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MAN+LI++M LP+SIANIFAARNI TAK+ALSLTE ELM+LLDV LSEV SA+A +SEI
Sbjct: 1 MANRLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHISEIA 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
PP+QTAL LMEQR EHL GHL T LKGLD AL GG+PFGV+TELVGPAG GKTQFCL
Sbjct: 61 SPPYQTALSLMEQRLQNEHLAGHLSTCLKGLDEALFGGIPFGVLTELVGPAGIGKTQFCL 120
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRR--------MIEMGASSFPEIFHSKGMAQ 172
KLS LAALP YGGLDG VIYIDVES F+S+R +++ G SFP++F+ K MAQ
Sbjct: 121 KLSFLAALPPSYGGLDGRVIYIDVESKFSSKRYFKYSIDVLVKFGMRSFPDVFNKKDMAQ 180
Query: 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLS 232
EMAGRILVL+P SLSEFTESL KIKVSLL+ +VKL++IDSM AL+ G +E AP QH L
Sbjct: 181 EMAGRILVLRPASLSEFTESLHKIKVSLLEQEVKLVIIDSMAALITGEYELGAPKQHSLG 240
Query: 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLG 292
WHIS I S+AEF+RIP+VVTNQVR ++ E Y FQ + + Y SHIVA LG
Sbjct: 241 WHISFIKSIAEFARIPVVVTNQVRSRNRKEVSHYSFQGWSRSECQEYSSGYGSHIVAALG 300
Query: 293 FHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEM 346
HWAH+VTIRLVLEAKSGQRF+ + KSP SPPLAF FTI SGISLL+++G E+
Sbjct: 301 VHWAHSVTIRLVLEAKSGQRFIKLAKSPMSPPLAFPFTITASGISLLSNNGEEL 354
>gi|79323389|ref|NP_001031438.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
gi|83305358|sp|Q9SK02.2|RA51B_ARATH RecName: Full=DNA repair protein RAD51 homolog 2; Short=AtRAD51B
gi|58430738|dbj|BAD89163.1| AtRAD51Balpha [Arabidopsis thaliana]
gi|330253047|gb|AEC08141.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
Length = 370
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/358 (65%), Positives = 279/358 (77%), Gaps = 2/358 (0%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANKLI EM L I+NIFAARNI TAKDALS+TE ELM+LLDV + E+RSA++ +SE
Sbjct: 1 MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEAT 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
PP Q+A L+E++ EHL GHLPT LKGLD LCGG+PFGV+TELVGP G GK+QFC+
Sbjct: 61 SPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM 120
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KL+L A+ P YGGLDG VIYIDVES F+SRR+IEMG SFPE+FH KGMAQEMAGRILV
Sbjct: 121 KLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILV 180
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240
L+PTSL+ FTES++++K S+LQNQVKLLVIDSM AL+ G ++ A Q L WHIS + S
Sbjct: 181 LRPTSLANFTESIQELKNSILQNQVKLLVIDSMTALLSGENKPGAQRQPQLGWHISFLKS 240
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYY-SHIVAVLGFHWAHAV 299
LAEFSRIPIVVTNQVR Q+ DE+ Y FQ + D KD T+ Y SH+VA LG +WAHAV
Sbjct: 241 LAEFSRIPIVVTNQVRSQNRDETSQYSFQAKVKDE-FKDNTKTYDSHLVAALGINWAHAV 299
Query: 300 TIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNLSSR 357
TIRLVLEAKSGQR + V KSP SPPLAF F I +GISLL+D+GTE+ P + +R
Sbjct: 300 TIRLVLEAKSGQRIIKVAKSPMSPPLAFPFHITSAGISLLSDNGTELKGPGINTIHAR 357
>gi|79565337|ref|NP_180423.3| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
gi|330253046|gb|AEC08140.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
Length = 371
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/358 (65%), Positives = 279/358 (77%), Gaps = 2/358 (0%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANKLI EM L I+NIFAARNI TAKDALS+TE ELM+LLDV + E+RSA++ +SE
Sbjct: 1 MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEAT 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
PP Q+A L+E++ EHL GHLPT LKGLD LCGG+PFGV+TELVGP G GK+QFC+
Sbjct: 61 SPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM 120
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KL+L A+ P YGGLDG VIYIDVES F+SRR+IEMG SFPE+FH KGMAQEMAGRILV
Sbjct: 121 KLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILV 180
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240
L+PTSL+ FTES++++K S+LQNQVKLLVIDSM AL+ G ++ A Q L WHIS + S
Sbjct: 181 LRPTSLANFTESIQELKNSILQNQVKLLVIDSMTALLSGENKPGAQRQPQLGWHISFLKS 240
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYY-SHIVAVLGFHWAHAV 299
LAEFSRIPIVVTNQVR Q+ DE+ Y FQ + D KD T+ Y SH+VA LG +WAHAV
Sbjct: 241 LAEFSRIPIVVTNQVRSQNRDETSQYSFQAKVKDE-FKDNTKTYDSHLVAALGINWAHAV 299
Query: 300 TIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNLSSR 357
TIRLVLEAKSGQR + V KSP SPPLAF F I +GISLL+D+GTE+ P + +R
Sbjct: 300 TIRLVLEAKSGQRIIKVAKSPMSPPLAFPFHITSAGISLLSDNGTELKGPGINTIHAR 357
>gi|57283105|emb|CAD70704.1| putative DNA recombination protein [Arabidopsis thaliana]
Length = 371
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/358 (63%), Positives = 274/358 (76%), Gaps = 2/358 (0%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANKLI E +FAARNI TAKDALS+TE ELM+LLDV + E+RSA++ +SE
Sbjct: 1 MANKLIGEWVFTPKSQTLFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEAT 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
PP Q+A L+E++ EHL GHLPT LKGLD LCGG+PFGV+TELVGP G GK+QFC+
Sbjct: 61 SPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM 120
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KL+L A+ P YGGLDG VIYIDVES F+SRR+IEMG SFPE+FH KGMAQEMAGRILV
Sbjct: 121 KLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILV 180
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240
L+PTSL+ FTES++++K S+LQNQVKLLVIDSM AL+ G ++ A Q L WHIS + S
Sbjct: 181 LRPTSLANFTESIQELKNSILQNQVKLLVIDSMTALLSGENKPGAQRQPQLGWHISFLKS 240
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYY-SHIVAVLGFHWAHAV 299
LAEFSRIPIVVTNQVR Q+ DE+ Y FQ + D KD T+ Y SH+VA LG +WAHAV
Sbjct: 241 LAEFSRIPIVVTNQVRSQNRDETSQYSFQAKVKDE-FKDNTKTYDSHLVAALGINWAHAV 299
Query: 300 TIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNLSSR 357
TIRLVLEAKSGQR + V KSP SPPLAF F I +GISLL+D+GTE+ P + +R
Sbjct: 300 TIRLVLEAKSGQRIIKVAKSPMSPPLAFPFQITSAGISLLSDNGTELKGPGINPIHAR 357
>gi|357453711|ref|XP_003597136.1| DNA repair protein RAD51-like protein [Medicago truncatula]
gi|355486184|gb|AES67387.1| DNA repair protein RAD51-like protein [Medicago truncatula]
Length = 484
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/405 (60%), Positives = 282/405 (69%), Gaps = 62/405 (15%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANKLI+++ LPKSIANIF ARNI TAKDALSLTE ELM+LLDV +SEV SA+A +SE+V
Sbjct: 1 MANKLINQLGLPKSIANIFTARNIITAKDALSLTEFELMELLDVGMSEVTSAMAHISELV 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
CPP QT QR E L GHLPT+LKGLD ALCGG+PFGVVTELVGP G GKTQFCL
Sbjct: 61 CPPCQT------QRVRNESLAGHLPTQLKGLDEALCGGIPFGVVTELVGPPGIGKTQFCL 114
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KLSLLA+LP +YGGLDG VIYIDVES F+S+R+IE+G SFPEIFH KGMAQEMAGRIL+
Sbjct: 115 KLSLLASLPVNYGGLDGRVIYIDVESKFSSKRLIEIGTKSFPEIFHKKGMAQEMAGRILI 174
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---------------- 224
L+PTSLSEF ESL++IKVSLLQ QVKLL+IDSM ALV G Q+
Sbjct: 175 LRPTSLSEFAESLQRIKVSLLQQQVKLLIIDSMAALVLGTTNQKCWPQVLNQSPNPVSEH 234
Query: 225 -----------------------------APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
A Q L WH+S I SLAEFSRIPIV+TNQV
Sbjct: 235 WGQTAEVGPSDLDPRLSSTRRVENEHDCGASRQQALGWHVSFIKSLAEFSRIPIVLTNQV 294
Query: 256 RPQSHDESCLYPFQVQKMDRILKD-RTR---------YYSHIVAVLGFHWAHAVTIRLVL 305
R DES +Y FQ M+++ D ++R + SH+VA LG +WAHAVTIRLVL
Sbjct: 295 RSHVGDESLMYSFQ-GMMNKLFSDTQSRSTKGDIPVTFDSHLVAALGINWAHAVTIRLVL 353
Query: 306 EAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPE 350
E+KSG+RF+ + KSP SPPLAF F I SGI LL +DG EM PE
Sbjct: 354 ESKSGKRFIKLAKSPMSPPLAFPFHITSSGIVLLDNDGIEMKGPE 398
>gi|186503833|ref|NP_001118403.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
gi|330253048|gb|AEC08142.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
Length = 338
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/326 (64%), Positives = 253/326 (77%), Gaps = 2/326 (0%)
Query: 33 LTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLD 92
+TE ELM+LLDV + E+RSA++ +SE PP Q+A L+E++ EHL GHLPT LKGLD
Sbjct: 1 MTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLD 60
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
LCGG+PFGV+TELVGP G GK+QFC+KL+L A+ P YGGLDG VIYIDVES F+SRR
Sbjct: 61 DTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRR 120
Query: 153 MIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDS 212
+IEMG SFPE+FH KGMAQEMAGRILVL+PTSL+ FTES++++K S+LQNQVKLLVIDS
Sbjct: 121 VIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQNQVKLLVIDS 180
Query: 213 MEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQK 272
M AL+ G ++ A Q L WHIS + SLAEFSRIPIVVTNQVR Q+ DE+ Y FQ +
Sbjct: 181 MTALLSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQNRDETSQYSFQAKV 240
Query: 273 MDRILKDRTRYY-SHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTI 331
D KD T+ Y SH+VA LG +WAHAVTIRLVLEAKSGQR + V KSP SPPLAF F I
Sbjct: 241 KDE-FKDNTKTYDSHLVAALGINWAHAVTIRLVLEAKSGQRIIKVAKSPMSPPLAFPFHI 299
Query: 332 NPSGISLLTDDGTEMVVPETCNLSSR 357
+GISLL+D+GTE+ P + +R
Sbjct: 300 TSAGISLLSDNGTELKGPGINTIHAR 325
>gi|61229406|gb|AAX40988.1| RAD51B [Arabidopsis thaliana]
Length = 338
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/326 (64%), Positives = 253/326 (77%), Gaps = 2/326 (0%)
Query: 33 LTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLD 92
+TE ELM+LLDV + E+RSA++ +SE PP Q+A L+E++ EHL GHLPT LKGLD
Sbjct: 1 MTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLD 60
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
LCGG+PFGV+TELVGP G GK+QFC+KL+L A+ P YGGLDG VIYIDVES F+SRR
Sbjct: 61 YTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRR 120
Query: 153 MIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDS 212
+IEMG SFPE+FH KGMAQEMAGRILVL+PTSL+ FTES++++K S+LQNQVKLLVIDS
Sbjct: 121 VIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQNQVKLLVIDS 180
Query: 213 MEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQK 272
M AL+ G ++ A Q L WHIS + SLAEFSRIPIVVTNQVR Q+ DE+ Y FQ +
Sbjct: 181 MTALLSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQNRDETSQYSFQAKV 240
Query: 273 MDRILKDRTRYY-SHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTI 331
D KD T+ Y SH+VA LG +WAHAVTIRLVLEAKSGQR + V KSP SPPLAF F I
Sbjct: 241 KDE-FKDNTKTYDSHLVAALGINWAHAVTIRLVLEAKSGQRIIKVAKSPMSPPLAFPFHI 299
Query: 332 NPSGISLLTDDGTEMVVPETCNLSSR 357
+GISLL+D+GTE+ P + +R
Sbjct: 300 TSAGISLLSDNGTELKGPGINTIHAR 325
>gi|115461801|ref|NP_001054500.1| Os05g0121700 [Oryza sativa Japonica Group]
gi|54287477|gb|AAV31221.1| putative DNA repair protein RAD51 [Oryza sativa Japonica Group]
gi|113578051|dbj|BAF16414.1| Os05g0121700 [Oryza sativa Japonica Group]
gi|215741250|dbj|BAG97745.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215741600|dbj|BAG98095.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195995|gb|EEC78422.1| hypothetical protein OsI_18249 [Oryza sativa Indica Group]
gi|222630019|gb|EEE62151.1| hypothetical protein OsJ_16938 [Oryza sativa Japonica Group]
Length = 363
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/357 (59%), Positives = 269/357 (75%), Gaps = 7/357 (1%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANKL+SEMRLP +A+I AAR +TTAKD LSL E+ELM +LD + R+A+A VSEI
Sbjct: 1 MANKLVSEMRLPPHLAHILAARRLTTAKDVLSLPEVELMGVLDAGIHTARAAVAHVSEIA 60
Query: 61 CPPFQTALLLMEQ-RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
CPP+QTAL L+E RA + G L T L+GLD AL GG+P G +TE+VGP+G GKTQFC
Sbjct: 61 CPPYQTALALLEAFRARGD---GRLATTLRGLDEALHGGIPAGKLTEVVGPSGIGKTQFC 117
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL 179
LKL+LLA LP YGGL+G V+YID ES F+SRRMIE+G SFP+IF +G+AQ+MAGRIL
Sbjct: 118 LKLALLATLPECYGGLNGRVLYIDTESKFSSRRMIEIGEKSFPQIFRQEGLAQKMAGRIL 177
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG--QHPLSWHISL 237
VL+PTSLSEFT+SLE++KV+LLQ+ VKLLV+DSM AL+ E+ A G QHPL W +S
Sbjct: 178 VLRPTSLSEFTKSLEQMKVTLLQHDVKLLVVDSMAALMSSEIEKSATGLRQHPLRWALSF 237
Query: 238 ITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAH 297
+ S+AEFS+IP+VVTNQVR QS+D+ Y F+V+K + + SH+VA LG WAH
Sbjct: 238 LKSIAEFSQIPVVVTNQVRSQSNDDGYRYSFEVEK-KYDSNNAEGFESHLVAALGIQWAH 296
Query: 298 AVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNL 354
AVTIRLV EA SG R++ V KSP +P +AF FT+ SGI LL+D+G ++ PE ++
Sbjct: 297 AVTIRLVFEAHSGHRYIKVAKSPMTPAVAFPFTVESSGIILLSDEGIDVPSPEITSI 353
>gi|357130009|ref|XP_003566651.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Brachypodium
distachyon]
Length = 364
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/356 (57%), Positives = 266/356 (74%), Gaps = 4/356 (1%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANKL+SEM+LP ++A++ AAR +TTAKD LSL E+ELM LLD ++ R+A++ VSE+
Sbjct: 1 MANKLVSEMQLPPNLAHLLAARRLTTAKDVLSLPEVELMCLLDAGIAVARAAVSHVSEVA 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
CPP QTAL L+E+R GG L T L+GLD AL GG+P G +TE+VGP+G GKTQFCL
Sbjct: 61 CPPCQTALALLEERVRLGG-GGRLATTLRGLDEALGGGIPVGKLTEVVGPSGIGKTQFCL 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KL+LLA LP YGGL+G V+YID ES F+SRRMIE+G S P+IF +G+AQ+M GRILV
Sbjct: 120 KLALLATLPECYGGLNGRVVYIDTESKFSSRRMIEIGQKSIPQIFRQEGLAQKMTGRILV 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG--QHPLSWHISLI 238
++PTSLS+FT+SLE++KV+LLQN VKLL++DSM AL+ +E+ A QHPL W +S +
Sbjct: 180 MRPTSLSDFTKSLEQMKVTLLQNDVKLLIVDSMAALMSTENERGASDRTQHPLRWALSFL 239
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
S+AEFSRIP++VTNQVR QS D+ Y F+V+K R+ SH+VA LG WAHA
Sbjct: 240 KSIAEFSRIPVIVTNQVRSQSKDDGYHYLFEVKKKGDS-HGTERFESHLVAALGIQWAHA 298
Query: 299 VTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNL 354
VTIRLV E+ SG RF+ V KSP SP + F F + SGI+LL+D+G ++ PE ++
Sbjct: 299 VTIRLVFESHSGHRFIKVAKSPMSPAVEFPFIVESSGITLLSDEGIDVSGPEITSI 354
>gi|147781098|emb|CAN73845.1| hypothetical protein VITISV_001338 [Vitis vinifera]
Length = 453
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/354 (61%), Positives = 244/354 (68%), Gaps = 55/354 (15%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANKLISEM LP SIANIFAARNITTAK+ALSLTE ELM+LLDV ++ V SA+A +SEIV
Sbjct: 1 MANKLISEMGLPTSIANIFAARNITTAKEALSLTEFELMELLDVGMARVTSAVAHISEIV 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
PP QTAL LMEQR E++ GHLPTRLKGLD AL GG+PFGV+TELVGP G GKTQFCL
Sbjct: 61 SPPTQTALSLMEQRVQNEYMAGHLPTRLKGLDEALGGGIPFGVLTELVGPPGIGKTQFCL 120
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KLSLLA+LPA YGGLDG VIYID ES F+SRR + +LV
Sbjct: 121 KLSLLASLPASYGGLDGRVIYIDAESKFSSRRYL-----------------------LLV 157
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240
+Q IK+SLLQN VKLLVIDSM ALV G S
Sbjct: 158 IQ------------HIKISLLQNHVKLLVIDSMAALVTG--------------------S 185
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
+AEFSRIPIVVTNQVR QSHD + Y FQV+ + D TR+ SH+VA LG HWAHAVT
Sbjct: 186 VAEFSRIPIVVTNQVRSQSHDGTSQYSFQVESRGETVDDHTRFDSHLVAALGIHWAHAVT 245
Query: 301 IRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNL 354
IRLVLEAK+GQRF+ V KSP SPPLAF F I PSGISLL D+G EM P+ +
Sbjct: 246 IRLVLEAKAGQRFLKVAKSPISPPLAFPFNITPSGISLLNDEGIEMKGPQISTI 299
>gi|4510403|gb|AAD21490.1| putative RAD51B-like DNA repair protein [Arabidopsis thaliana]
Length = 353
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/360 (57%), Positives = 252/360 (70%), Gaps = 24/360 (6%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANKLI EM L I+NIFAARNI TAKDALS+TE ELM+LLDV + E+RSA++ +SE
Sbjct: 1 MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEAT 60
Query: 61 CPPFQT-ALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
PP Q+ + L ++ EHL GHLPT LKGLD LCGG+PFGV+TELVGP G GK+QFC
Sbjct: 61 SPPCQSVSSLFFFKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFC 120
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQE-MAGRI 178
+KL+L A+ P YGGLDG VIYIDVES F+SRR+IEMG SFPE+FH KGMAQE + G
Sbjct: 121 MKLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMAQEVVCGTA 180
Query: 179 LVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLI 238
+ +Q ++K S+LQNQVKLLVIDSM AL+ G ++ A Q L WHIS +
Sbjct: 181 ICIQ------------ELKNSILQNQVKLLVIDSMTALLSGENKPGAQRQPQLGWHISFL 228
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYY-SHIVAVLGFHWAH 297
+VTNQVR Q+ DE+ Y FQ + D KD T+ Y SH+VA LG +WAH
Sbjct: 229 KYE--------LVTNQVRSQNRDETSQYSFQAKVKDE-FKDNTKTYDSHLVAALGINWAH 279
Query: 298 AVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNLSSR 357
AVTIRLVLEAKSG+R + V KSP SPPLAF F I +GISLL+D+GTE+ P + +R
Sbjct: 280 AVTIRLVLEAKSGKRIIKVAKSPMSPPLAFPFHITSAGISLLSDNGTELKGPGINTIHAR 339
>gi|242089345|ref|XP_002440505.1| hypothetical protein SORBIDRAFT_09g002090 [Sorghum bicolor]
gi|241945790|gb|EES18935.1| hypothetical protein SORBIDRAFT_09g002090 [Sorghum bicolor]
Length = 364
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/356 (56%), Positives = 265/356 (74%), Gaps = 4/356 (1%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MAN +SEMRLP +A++ AAR + TAKD LSL E+ELM +LD L R+A+ALVSE
Sbjct: 1 MANMPVSEMRLPPHLAHLLAARRLDTAKDVLSLPEVELMAILDAGLPTARAAVALVSEAA 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
CPP QTAL L+E+R GG L T L GLD AL GG+P G +TE+VGP+G GKTQFCL
Sbjct: 61 CPPCQTALALLEERVRLGG-GGRLATTLCGLDEALGGGIPMGKLTEVVGPSGIGKTQFCL 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KL+LLAALP +YGGLDG V+YID E F+SRRMIE+G SFP+IF +G+AQ+MAGRILV
Sbjct: 120 KLALLAALPEYYGGLDGRVVYIDTEFKFSSRRMIEIGQKSFPQIFRQEGLAQKMAGRILV 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG--QHPLSWHISLI 238
++PT+L++FT+SLE++KV+LLQ+ VKLL++DSM AL+ +E+ G QHPL W +S +
Sbjct: 180 IRPTTLADFTKSLEEMKVTLLQHDVKLLIVDSMAALMSLENEKVTAGFSQHPLRWTLSFL 239
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
S+AEFSRIP+VVTNQVR QS+D+ + F+V K D K ++ SH+VA LG WAHA
Sbjct: 240 KSIAEFSRIPVVVTNQVRSQSNDDGYHFSFEVDKKDGN-KCAEKFDSHLVAALGIQWAHA 298
Query: 299 VTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNL 354
+T+RLV E+ SG RF+ V KSP SP +AF F + SGI+LL+D+ ++ PE ++
Sbjct: 299 ITVRLVFESHSGHRFIKVAKSPMSPAVAFPFVVESSGITLLSDESIDVTGPEITSI 354
>gi|212720586|ref|NP_001132052.1| uncharacterized protein LOC100193464 [Zea mays]
gi|194693306|gb|ACF80737.1| unknown [Zea mays]
Length = 363
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/356 (56%), Positives = 263/356 (73%), Gaps = 4/356 (1%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MAN L+SEMRLP +A++ AAR + TAKD LSL E+ELM +LD L R+A+A VSE
Sbjct: 1 MANMLVSEMRLPLYLAHLLAARRLDTAKDVLSLPEVELMAILDAGLPTARAAIAHVSEAA 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
CPP QTAL L+E+R GG L T L GLD AL GG+P G +TE+VGP+G GKTQFCL
Sbjct: 61 CPPCQTALSLLEERVRLGG-GGRLATMLCGLDEALGGGIPTGKLTEVVGPSGIGKTQFCL 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KL+LLAALP +YGGLDG V+YID E F+ RRMIE+G SFP+IF +G+AQ+MAGRILV
Sbjct: 120 KLALLAALPEYYGGLDGRVVYIDTEFKFSPRRMIEIGQKSFPQIFRQEGLAQKMAGRILV 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG--QHPLSWHISLI 238
++PTSL++FT+SLE++KV+LLQ+ VKLL++DS+ AL+ +E+ G QHPL W +S +
Sbjct: 180 MRPTSLADFTKSLEEMKVTLLQHDVKLLIVDSVAALMSMENEKATAGFRQHPLRWSLSFL 239
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
S+AEFSRIP+VVTNQVR QS+D+ + F+V + D R+ SH+VA LG WAHA
Sbjct: 240 KSIAEFSRIPVVVTNQVRSQSNDDGYHFSFEVDRKDGS-NCAERFDSHLVAALGIQWAHA 298
Query: 299 VTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNL 354
VT+RLV E+ SG RF+ V KSP SP +AF F + SGI+LL+D+ ++ P+ ++
Sbjct: 299 VTVRLVFESHSGHRFIKVAKSPMSPAVAFPFAVESSGITLLSDESIDVTGPDITSI 354
>gi|413950133|gb|AFW82782.1| hypothetical protein ZEAMMB73_481254 [Zea mays]
Length = 390
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/356 (56%), Positives = 263/356 (73%), Gaps = 4/356 (1%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MAN L+SEMRLP +A++ AAR + TAKD LSL E+ELM +LD L R+A+A VSE
Sbjct: 1 MANMLVSEMRLPLYLAHLLAARRLDTAKDVLSLPEVELMAILDAGLPTARAAIAHVSEAA 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
CPP QTAL L+E+R GG L T L GLD AL GG+P G +TE+VGP+G GKTQFCL
Sbjct: 61 CPPCQTALSLLEERVRLGG-GGRLATMLCGLDEALGGGIPTGKLTEVVGPSGIGKTQFCL 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KL+LLAALP +YGGLDG V+YID E F+ RRMIE+G SFP+IF +G+AQ+MAGRILV
Sbjct: 120 KLALLAALPEYYGGLDGRVVYIDTEFKFSPRRMIEIGQKSFPQIFRQEGLAQKMAGRILV 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG--QHPLSWHISLI 238
++PTSL++FT+SLE++KV+LLQ+ VKLL++DS+ AL+ +E+ G QHPL W +S +
Sbjct: 180 MRPTSLADFTKSLEEMKVTLLQHDVKLLIVDSVAALMSMENEKATAGFRQHPLRWSLSFL 239
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
S+AEFSRIP+VVTNQVR QS+D+ + F+V + D R+ SH+VA LG WAHA
Sbjct: 240 KSIAEFSRIPVVVTNQVRSQSNDDGYHFSFEVDRKDGS-NCAERFDSHLVAALGIQWAHA 298
Query: 299 VTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNL 354
VT+RLV E+ SG RF+ V KSP SP +AF F + SGI+LL+D+ ++ P+ ++
Sbjct: 299 VTVRLVFESHSGHRFIKVAKSPMSPAVAFPFAVESSGITLLSDESIDVTGPDITSI 354
>gi|238479387|ref|NP_001154538.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
gi|58430740|dbj|BAD89164.1| AtRAD51Bbeta [Arabidopsis thaliana]
gi|330253049|gb|AEC08143.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
Length = 243
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 157/237 (66%), Positives = 190/237 (80%)
Query: 33 LTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLD 92
+TE ELM+LLDV + E+RSA++ +SE PP Q+A L+E++ EHL GHLPT LKGLD
Sbjct: 1 MTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLD 60
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
LCGG+PFGV+TELVGP G GK+QFC+KL+L A+ P YGGLDG VIYIDVES F+SRR
Sbjct: 61 DTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRR 120
Query: 153 MIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDS 212
+IEMG SFPE+FH KGMAQEMAGRILVL+PTSL+ FTES++++K S+LQNQVKLLVIDS
Sbjct: 121 VIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQNQVKLLVIDS 180
Query: 213 MEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQ 269
M AL+ G ++ A Q L WHIS + SLAEFSRIPIVVTNQVR Q+ DE+ Y FQ
Sbjct: 181 MTALLSGENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQNRDETSQYSFQ 237
>gi|359495117|ref|XP_003634915.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog
2-like [Vitis vinifera]
Length = 195
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 107/173 (61%), Positives = 126/173 (72%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANK ISEM L SIA+IF ARNITTAK+ LSLTE E M+LLDV + +V +A + +IV
Sbjct: 1 MANKWISEMSLSTSIADIFVARNITTAKEVLSLTEFEFMELLDVGMVQVTFVVAHIRKIV 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
PP +T L LMEQR E + GHLPT LKGLD L GG+PFGV+TELVGP G GKT F
Sbjct: 61 SPPMRTTLSLMEQRVQNECMVGHLPTCLKGLDETLGGGIPFGVLTELVGPLGIGKTXFFF 120
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQE 173
KLS L +LP YGGLDG VIYIDV+S F+SR+MI++G S EIFH + M E
Sbjct: 121 KLSPLPSLPTSYGGLDGRVIYIDVDSKFSSRKMIKIGLKSSREIFHVERMENE 173
>gi|255578777|ref|XP_002530246.1| conserved hypothetical protein [Ricinus communis]
gi|223530250|gb|EEF32152.1| conserved hypothetical protein [Ricinus communis]
Length = 238
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/152 (62%), Positives = 118/152 (77%)
Query: 195 KIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQ 254
+IK +LQ QVKLL+IDSM A+V G ++Q AP QH L WHIS I SLAEFSRIP++VTNQ
Sbjct: 67 QIKFLVLQQQVKLLIIDSMAAVVSGENDQGAPRQHSLGWHISFIKSLAEFSRIPVLVTNQ 126
Query: 255 VRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFM 314
VR QS++E C Y FQVQ+ D ++ +Y SH++A LG HWAHAVT+RLVLEAK GQR++
Sbjct: 127 VRSQSYNEVCQYSFQVQRNDETQEEPEKYDSHLIAALGIHWAHAVTVRLVLEAKLGQRYI 186
Query: 315 NVEKSPTSPPLAFSFTINPSGISLLTDDGTEM 346
V KSP SPP++F F I SGI+LL DDGTE+
Sbjct: 187 KVAKSPISPPMSFPFNITASGIALLDDDGTEL 218
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/76 (71%), Positives = 67/76 (88%), Gaps = 2/76 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANKLISE+ LPKSI+NIFAARNI TAKDALSLTE ELM+LLDVELS+V+SA+A +S IV
Sbjct: 1 MANKLISEIGLPKSISNIFAARNIKTAKDALSLTEFELMELLDVELSQVKSAVAQISAIV 60
Query: 61 CPPFQTAL--LLMEQR 74
PP+QT + L+++Q+
Sbjct: 61 SPPYQTQIKFLVLQQQ 76
>gi|440897351|gb|ELR49062.1| DNA repair protein RAD51-like protein 2, partial [Bos grunniens
mutus]
Length = 373
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 191/365 (52%), Gaps = 10/365 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + I T +D L L+ LELMK+ + V L LVS
Sbjct: 1 MGSKKLRRVGLSQELCDRLNRHQIVTCQDFLCLSPLELMKMTGLSYQGVHELLCLVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR A H L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APQMQTAYEIKTQRCAA-HSSAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F ++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFDTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG-----QHPLSWHI 235
+ S E + +E ++ ++ VKL++IDS+ ++V + + G L+
Sbjct: 180 YRELSCDEVLQRIESLEEEIISKGVKLVIIDSVASVVRKEFDTQLQGNVRERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
+ + LAE IP+++TNQ+ V D + L + T S + A LG
Sbjct: 240 ASLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCLTAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEM--VVPET 351
W+H+V RL+L+ S +R + + KSP +P AF +TI G+ L + G + V P +
Sbjct: 300 WSHSVNTRLILQYLGSERRQVLIAKSPLAPFTAFVYTIEKEGLVLQGEVGLRVPKVFPCS 359
Query: 352 CNLSS 356
C+L++
Sbjct: 360 CHLTA 364
>gi|300797883|ref|NP_001180066.1| DNA repair protein RAD51 homolog 2 [Bos taurus]
gi|296483014|tpg|DAA25129.1| TPA: RAD51-like 1 isoform 1 [Bos taurus]
Length = 364
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 180/345 (52%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + I T +D L L+ LELMK+ + V L LVS
Sbjct: 15 MGSKKLRRVGLSQELCDRLNRHQIVTCQDFLCLSPLELMKMTGLSYQGVHELLCLVSRAC 74
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR A H L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 75 APQMQTAYEIKTQRCAA-HSSAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 133
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F ++ + ++ +
Sbjct: 134 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFDTEEKLLLTSSKVHL 193
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG-----QHPLSWHI 235
+ S E + +E ++ ++ VKL++IDS+ ++V + + G L+
Sbjct: 194 YRELSCDEVLQRIESLEEEIISKGVKLVIIDSVASVVRKEFDTQLQGNVRERNKFLAREA 253
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
+ + LAE IP+++TNQ+ V D + L + T S + A LG
Sbjct: 254 ASLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCLTAALGNT 313
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P AF +TI G+ L
Sbjct: 314 WSHSVNTRLILQYLGSERRQILIAKSPLAPFTAFVYTIEKEGLVL 358
>gi|395849624|ref|XP_003797421.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Otolemur garnettii]
Length = 350
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/345 (32%), Positives = 183/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M K + + L + + + + I T KD L L+ LEL+K+ + V L +VS
Sbjct: 1 MGGKKLRRVGLSQELCDRLSRHQIVTCKDFLCLSPLELVKMTGLSYCGVHELLRMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + +R+A + L T L LD ALCGGV G +TE+ GP G GKTQFC+
Sbjct: 61 APQMQTAYRIKTRRSA-DVAPAFLSTTLPALDEALCGGVACGSLTEITGPPGCGKTQFCM 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGLDG V+Y+D ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSVLATLPTNMGGLDGAVVYVDTESAFSAERLVEIAESRFPSYFNAEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG-----QHPLSWHI 235
+ S E + +E ++ ++ VKL++IDS+ ++V + + G L+
Sbjct: 180 YRELSCDEVLQRIESLEEEIISKGVKLVIIDSVASVVRKEFDTQLQGNLKERNRFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S + A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEDTCGSSCVTAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S ++ + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERKQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|403264489|ref|XP_003924513.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 350
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 113/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS+
Sbjct: 1 MGSKKLKRVGLSEELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVYELLCMVSKAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL++IDS+ ++V + + PG L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVIIDSVASVVRKEFDTQLPGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S + A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVTAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHCVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|403264491|ref|XP_003924514.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 350
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 113/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS+
Sbjct: 1 MGSKKLKRVGLSEELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVYELLCMVSKAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL++IDS+ ++V + + PG L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVIIDSVASVVRKEFDTQLPGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S + A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVTAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHCVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|348573117|ref|XP_003472338.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Cavia
porcellus]
Length = 440
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 187/345 (54%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M+NK + + + + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MSNKKLRRVGVSQELCDRLSRHQIVTCRDFLCLSPLELMKVTGLSYQGVHELLRMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P +T + QR+A L L T L LD AL GG+ G +TE+ GP G GKTQFC+
Sbjct: 61 APQMKTVYGIKTQRSAN-LLPAFLSTTLSALDEALHGGIACGSLTEITGPPGCGKTQFCM 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R+IE+ S FP F+++ + ++ V
Sbjct: 120 MMSVLATLPPNMGGLEGAVVYIDTESAFSAERLIEIAESRFPRYFNTEEKLLLTSTKVYV 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + + + +E ++ ++ +VK+++IDS+ ++V + + G L+
Sbjct: 180 YRELTCEKVLQRIESLEEEIISKRVKVVIIDSIASVVRKEFDTQLQGNMKERNKFLAKGA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
SL+ LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SLLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F++TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFTYTIKAEGLVL 344
>gi|335292717|ref|XP_003128695.2| PREDICTED: DNA repair protein RAD51 homolog 2 [Sus scrofa]
Length = 350
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 179/345 (51%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + +I T +D L L+ LELMK+ + V L LVS
Sbjct: 1 MGSKKLRRVGLSQELCDRLNRHHIITCQDFLCLSPLELMKMTGLSYQGVHDLLCLVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
PP QTA + QR+A L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APPMQTAYEIKTQRSAVPS-PAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP GGL+G V+YID ES F++ R++EM S FP F ++ ++ +
Sbjct: 120 MMSILATLPIDMGGLEGAVVYIDTESAFSAERLVEMAESRFPRYFSTEEKLLLTVSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ S E + +E ++ ++ VKL++IDS+ ++V + + G L+
Sbjct: 180 YRELSCDEVLQRIESLEEEIISKGVKLVIIDSVASVVRKEFDTQLQGNMRERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
+ + LAE IP+++TNQ+ V D + L + T S + A LG
Sbjct: 240 ASLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCMTAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + V KSP +P F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLGSEKRQILVAKSPLAPFTTFVYTIEKEGLVL 344
>gi|449502449|ref|XP_002199421.2| PREDICTED: DNA repair protein RAD51 homolog 2 [Taeniopygia guttata]
Length = 400
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 181/350 (51%), Gaps = 13/350 (3%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MA K + +L + + + ITT +D L L+ LELMK+ EV+ L VS
Sbjct: 1 MAAKKLRRAQLSQEMCERLSRYQITTCQDFLCLSLLELMKVTGQNYYEVQKLLCKVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA M+ + + L T L GLD L GGVP G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYE-MKLKKSVNPSSAFLSTTLHGLDRVLHGGVPCGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
LS+LA LP GGLDG VIYID ES F++ R+IE+ A+ FP F S M I +
Sbjct: 120 MLSVLATLPVSMGGLDGAVIYIDTESAFSAERLIEIAANRFPAYFDSDEKLLCMTRSIHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQ-----HPLSWHI 235
+ + + + ++ ++ +VKL++IDS+ ++V + + G + L+
Sbjct: 180 YRELTCCSVLKRIMSLEEEVILKKVKLIIIDSVASVVRKEFDTKLQGNLAERSNFLTRGA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKD-----RTRYYSHIVA 289
S++ LAE IP+++TNQ+ ++ V D + L + R S++ A
Sbjct: 240 SVLKYLAEEFSIPVILTNQITTSLSSGPGVWADLVSPADDLSLSEGSSVSEKRDSSYVTA 299
Query: 290 VLGFHWAHAVTIRLVLEAKS-GQRFMNVEKSPTSPPLAFSFTINPSGISL 338
LG W+H+V RL+L+ R + V KSP +P F +TI SG+ L
Sbjct: 300 ALGNTWSHSVNTRLILQYHDLPTRQLLVAKSPVAPFSTFFYTIEKSGLVL 349
>gi|296215342|ref|XP_002754085.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Callithrix jacchus]
Length = 350
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 182/345 (52%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCTVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKTQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ VKL++IDS+ ++V + + PG L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGVKLVIIDSVASVVRKEFDTQLPGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S + A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVTAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHCVNTRLILQYLGSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|297298124|ref|XP_001108071.2| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 2 [Macaca
mulatta]
Length = 523
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 183/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 153 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKMTGLSYRGVHELLRMVSRAC 212
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 213 APKMQTAYEIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 271
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP H GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 272 MMSILATLPTHMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 331
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL++IDS+ ++V + + G L+
Sbjct: 332 YRELTCDEVLQRIESLEEEIISKGIKLVIIDSVASVVRKEFDTQLQGNLKERNKFLAREA 391
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
+ LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 392 CSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPTDDLSLSEGTSGSSCVIAALGNT 451
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 452 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 496
>gi|426233576|ref|XP_004010792.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Ovis aries]
Length = 350
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 178/345 (51%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLRRVGLSQELCDRLNRHQIVTCQDFLCLSPLELMKMTGLSYQAVHELLCVVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR A H L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APQMQTAYEIKTQRCAA-HSSAFLSTTLPALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F ++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFDTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG-----QHPLSWHI 235
+ S E + +E ++ ++ VKL++IDS+ ++V + + G L+
Sbjct: 180 YRELSCDEVLQRIESLEEEIISKGVKLVIIDSVASVVRKEFDTQLQGNVRERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
+ + LAE IP+++TNQ+ V D + L + T + A LG
Sbjct: 240 ASLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSRSGCLTAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S R + + KSP +P AF +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLGSEGRQILIAKSPLAPFTAFVYTIEKEGLVL 344
>gi|332228951|ref|XP_003263650.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 2 [Nomascus
leucogenys]
Length = 350
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDTQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|297695369|ref|XP_002824917.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 1 [Pongo
abelii]
Length = 350
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELM++ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMRVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QRAA + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRAA-DFSPAFLSTTLSALDEALHGGVACGSLTEVTGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPSYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDTQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQV V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQVTTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIEEEGLVL 344
>gi|60830799|gb|AAX36945.1| RAD51-like 1 [synthetic construct]
Length = 351
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|332228953|ref|XP_003263651.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 3 [Nomascus
leucogenys]
Length = 350
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDTQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|19924117|ref|NP_598194.1| DNA repair protein RAD51 homolog 2 isoform 2 [Homo sapiens]
gi|3005963|emb|CAA75680.1| R51H2 [Homo sapiens]
gi|73808274|gb|AAZ85144.1| RAD51-like 1 (S. cerevisiae) [Homo sapiens]
Length = 350
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|114653601|ref|XP_001138758.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 2 [Pan
troglodytes]
Length = 350
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|10835029|ref|NP_002868.1| DNA repair protein RAD51 homolog 2 isoform 1 [Homo sapiens]
gi|397507279|ref|XP_003824129.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Pan paniscus]
gi|2262209|gb|AAB63358.1| RecA-like protein [Homo sapiens]
gi|2801405|gb|AAC39723.1| DNA repair protein RAD51B [Homo sapiens]
gi|49168604|emb|CAG38797.1| RAD51L1 [Homo sapiens]
gi|60819388|gb|AAX36498.1| RAD51-like 1 [synthetic construct]
gi|61363118|gb|AAX42338.1| RAD51-like 1 [synthetic construct]
gi|119601363|gb|EAW80957.1| RAD51-like 1 (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119601364|gb|EAW80958.1| RAD51-like 1 (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|410221126|gb|JAA07782.1| RAD51-like 1 [Pan troglodytes]
gi|410247166|gb|JAA11550.1| RAD51-like 1 [Pan troglodytes]
gi|410296250|gb|JAA26725.1| RAD51-like 1 [Pan troglodytes]
gi|410335225|gb|JAA36559.1| RAD51-like 1 [Pan troglodytes]
Length = 350
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|395746014|ref|XP_003778373.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 2 [Pongo
abelii]
Length = 384
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELM++ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMRVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QRAA + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRAA-DFSPAFLSTTLSALDEALHGGVACGSLTEVTGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPSYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDTQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQV V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQVTTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIEEEGLVL 344
>gi|28193230|emb|CAD62357.1| unnamed protein product [Homo sapiens]
Length = 375
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 10 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 69
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 70 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 128
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 129 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 188
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 189 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREA 248
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 249 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 308
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 309 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 353
>gi|114653599|ref|XP_001138853.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 3 [Pan
troglodytes]
Length = 346
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|332842559|ref|XP_003314455.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Pan troglodytes]
Length = 366
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|46255039|ref|NP_598193.2| DNA repair protein RAD51 homolog 2 isoform 3 [Homo sapiens]
gi|38258892|sp|O15315.2|RA51B_HUMAN RecName: Full=DNA repair protein RAD51 homolog 2; Short=R51H2;
AltName: Full=RAD51 homolog B; Short=Rad51B; AltName:
Full=RAD51-like protein 1
gi|20987416|gb|AAH30219.1| RAD51-like 1 (S. cerevisiae) [Homo sapiens]
gi|61364588|gb|AAX42568.1| RAD51-like 1 [synthetic construct]
gi|123980046|gb|ABM81852.1| RAD51-like 1 (S. cerevisiae) [synthetic construct]
gi|123994811|gb|ABM85007.1| RAD51-like 1 (S. cerevisiae) [synthetic construct]
gi|261860168|dbj|BAI46606.1| RAD51-like 1 [synthetic construct]
Length = 384
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|332228955|ref|XP_003263652.1| PREDICTED: DNA repair protein RAD51 homolog 2 isoform 4 [Nomascus
leucogenys]
Length = 401
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDTQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|28375587|emb|CAD66573.1| unnamed protein product [Homo sapiens]
Length = 394
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 11 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 70
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 71 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 129
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 130 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 189
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 190 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREA 249
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 250 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 309
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 310 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 354
>gi|60810438|gb|AAX36146.1| RAD51-like 1 [synthetic construct]
Length = 385
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>gi|354472143|ref|XP_003498300.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Cricetulus
griseus]
Length = 387
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 118/348 (33%), Positives = 187/348 (53%), Gaps = 14/348 (4%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M+NK + + L + + + + I +D L L+ LELMK+ + V+ L +VS
Sbjct: 1 MSNKKLRRVGLSQELCDRLSRHQIVNCQDFLGLSPLELMKVTGLSYGGVQELLYMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + +R+A E L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APQMQTAYDIKMRRSA-ELSPAFLSTTLSALDKALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES FT+ R++E+ S FP F+++ M+ ++ +
Sbjct: 120 MMSVLATLPTNMGGLEGTVVYIDTESAFTAERLVEIAESRFPLYFNTEEKLLLMSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV-----PGVHEQRAPGQHPLSWHI 235
+ S + LE ++ ++ VKL+++DS+ ++V P + L+
Sbjct: 180 HRELSCEAVLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDPQLQGNIKERNKFLAKQA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM----DRILKDRTRYYSHIVAVL 291
SL+ LAE +P+++TNQ+ +H L P Q + D L + T S +VA L
Sbjct: 240 SLLKYLAEEFSLPVILTNQI--TTHLSGAL-PSQADLVSPADDLSLSEGTSGSSCVVAAL 296
Query: 292 GFHWAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
G W+H V RL+L+ S +R + + KSP + +F +TI G+ L
Sbjct: 297 GNSWSHCVNTRLILQYLDSERRQILIAKSPLAAFTSFIYTIKGEGLVL 344
>gi|291406479|ref|XP_002719601.1| PREDICTED: RAD51-like 1 [Oryctolagus cuniculus]
Length = 344
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/349 (32%), Positives = 182/349 (52%), Gaps = 16/349 (4%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MA+K + + L + + + I T +D L L+ LELMK+ + V L +VS+
Sbjct: 1 MASKKLRRVGLSPELCDRLSRHRIVTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSKAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P +TA + QR A LPT L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APQMKTAYAMKTQRCAALS-PAFLPTSLPALDEALRGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP GGL+G V+YID ES F++ R+IE+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTDMGGLEGAVVYIDTESAFSAERLIEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ S E + +E ++ ++ VKL++IDS+ ++V + + G L+
Sbjct: 180 YRELSCDEVMQRIESLEEDIISKGVKLVIIDSVASVVRKEFDTQLQGNMKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQ-----SHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
SL+ +AE IP+++TNQ+ + + P D L + + S + A
Sbjct: 240 SLLKYVAEEFSIPVILTNQITTHLSGALTSQADLVSPAD----DLSLSEGSSGSSCVTAA 295
Query: 291 LGFHWAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
LG W+H V RL+L S +R + + KSP +P +F +TI G+ L
Sbjct: 296 LGNTWSHNVNTRLILRYLDSKRRQILIAKSPVAPFASFVYTIKDEGLVL 344
>gi|345803591|ref|XP_547868.3| PREDICTED: DNA repair protein RAD51 homolog 2 [Canis lupus
familiaris]
Length = 350
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 186/349 (53%), Gaps = 16/349 (4%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M+++ + + L + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MSSRKLRRVGLSQELCDRLNRYQIVTCQDFLCLSPLELMKMTGLSYKGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + + +A+ L L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYRIKMETSAS-LLPAFLATTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGDVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ S + +E ++ ++ VKL++IDS+ ++V + + G L+
Sbjct: 180 YRELSCDAVLQRIESLEEEIISKGVKLVIIDSVASVVRKEFDTQLQGNMRERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQV-----RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
+ + LAE IP+++TNQ+ R + + P D L + T S ++A
Sbjct: 240 ASLKYLAEEFSIPVILTNQITTHLSRALASQADLVSPAD----DLSLSEGTSASSCVMAA 295
Query: 291 LGFHWAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
LG W+H+V RL+L+ S +R + + KSP +P +F++TI G+ L
Sbjct: 296 LGNTWSHSVNTRLILQYLGSERRQILIAKSPLAPFTSFAYTIKKEGLVL 344
>gi|412986207|emb|CCO17407.1| spindle D [Bathycoccus prasinos]
Length = 369
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 115/359 (32%), Positives = 181/359 (50%), Gaps = 44/359 (12%)
Query: 22 RNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLG 81
R + +A++AL +EL++++L+DV L + AL +++ CP A M++++A + G
Sbjct: 17 RGVRSAEEALKKSELDVIELIDVSLEKASKALRQIAKGACPEPINAFQ-MKEKSAGQKGG 75
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
+ T +K LD AL GGVP G +TE V PAG+GKTQ CL L P ++GGLD V++
Sbjct: 76 NFIKTGVKTLDEALLGGVPVGTITEFVAPAGSGKTQMCLGLVAQTCAPKNFGGLDASVVF 135
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSK---------------GMAQE--------MAGRI 178
+D E TF+S R+ E+ FPEI+ GM ++ +A ++
Sbjct: 136 VDTEQTFSSNRLAEIAKKRFPEIYDKDYYKDGNNNDSVSNFGGMDKDAEMRLEKLLAEKV 195
Query: 179 LVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---------PGQH 229
V+ P SL E +E +K +L Q+ KL+VIDS+ L A Q+
Sbjct: 196 FVVTPQSLQELKVRIENLKPALTQSDAKLIVIDSVARLARAEGGIGAGSSSSESLVKRQN 255
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQV-QKMDRILKDRTRYYSHIV 288
LS + + AE + +VVTNQV ++ S + K + + +D S +
Sbjct: 256 ILSSIAAALKRHAEQLNVAVVVTNQVTTNTNINSNYHNSNDPAKANMVSRD-----SQVA 310
Query: 289 AVLGFHWAHAVTIRL----VLEAKS-GQRFMNVEKSPTSPPLAFSFTINPSGISLLTDD 342
A LG WAH V +R+ ++ K+ G+R M V KSP + F + I SG + + D
Sbjct: 311 AALGTKWAHCVNVRISMSGAIDGKADGKREMRVVKSPRTALSRFLYRITASGCASIDID 369
>gi|344273519|ref|XP_003408569.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Loxodonta africana]
Length = 386
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 113/349 (32%), Positives = 182/349 (52%), Gaps = 16/349 (4%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MA K + + L + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MAGKKLRRVGLSQDLCERLLRHRIVTCQDFLCLSPLELMKVTGLSYGGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APQMQTAFRMKTQRSA-DLSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V YID ES F++ R++E+ S FPE F+++ + ++ +
Sbjct: 120 MMSVLATLPTNMGGLEGAVAYIDTESAFSAERLVEIAESRFPEYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ VKL++IDS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGVKLVIIDSVASVVRKEFDTQLQGNMKERSKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQV-----RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
+ + LAE IP+++TNQ+ R + + P D + + S + A
Sbjct: 240 ASLKYLAEEFSIPVILTNQITTHLSRTLASQADLVSPAD----DLSPSEGSSASSCVTAA 295
Query: 291 LGFHWAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
LG W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 296 LGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKDEGLVL 344
>gi|47087371|ref|NP_998577.1| DNA repair protein RAD51 homolog 2 [Danio rerio]
gi|30354420|gb|AAH52122.1| Zgc:56581 [Danio rerio]
Length = 373
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 184/344 (53%), Gaps = 16/344 (4%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + + + T +D LS+T++EL +L + + LVS+
Sbjct: 1 MGSKKLRRSGVSADLCERLKRHQLETCQDVLSVTQVELSRLAGLSYPAALNLQRLVSKAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P TAL L +++ E L T L LD L GG+P G +TE+ GP+G GKTQ C+
Sbjct: 61 APAVITALDLWKRK---EELC--FSTSLPALDRLLHGGLPRGALTEVTGPSGCGKTQLCM 115
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
LS+LA LP GGLD GVIYID ES F++ R++EM S FPE F K EMA R+ +
Sbjct: 116 MLSVLATLPKSLGGLDSGVIYIDTESAFSAERLVEMAQSRFPEFFSVKERLLEMAARVHL 175
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQ-----HPLSWHI 235
+ + + + LE+++ ++ + L+++DS+ ++V + PG + L
Sbjct: 176 FRELTCQDVLKRLERLEEDIIACRAGLVILDSVASVVRKEFDTSLPGNLTHRSNFLGQEA 235
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHW 295
+++ L++ IP+V+TNQ+ +H L+ Q + D ++ + + + A LG W
Sbjct: 236 AVLKYLSQEFCIPVVLTNQI--TTHVGEKLHCPQWNQTDASFEEDSGF---VTAALGNTW 290
Query: 296 AHAVTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
+H+V RL+++ + S +R + + KSP +P S+TI GI L
Sbjct: 291 SHSVNTRLIVQYEDSERRQIVIAKSPVAPFAVLSYTIQKEGIRL 334
>gi|149737201|ref|XP_001500140.1| PREDICTED: DNA repair protein RAD51 homolog 2 [Equus caballus]
Length = 350
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 178/345 (51%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLRRVGLSQELCDRLSRHQIVTCRDFLCLSPLELMKMTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A LPT L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APQMQTAYGIKTQRSAALS-PAFLPTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP GGL+G V+YID E+ F++ R++E+ S FP F+++ + + +
Sbjct: 120 MMSILATLPIDMGGLEGAVVYIDTEAAFSAERLVEIAESRFPSYFNNEDKLLLTSSNVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ S E + +E ++ ++ VKL++IDS+ ++V + + G L+
Sbjct: 180 YRELSCDEVLQRVESLEEEIISKGVKLVIIDSVASVVRKEFDTQLQGNMRERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIV-AVLGFH 294
+ + LAE IP+++TNQ+ V D + S V A LG
Sbjct: 240 ASLKYLAEEFSIPVILTNQITTHLSGAPASQADLVSPADDLSPSEGPSGSSCVTAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLGSERRQILIAKSPLAPFTSFVYTIKKEGLVL 344
>gi|31982072|ref|NP_033040.2| DNA repair protein RAD51 homolog 2 isoform 1 [Mus musculus]
gi|38258893|sp|O35719.2|RA51B_MOUSE RecName: Full=DNA repair protein RAD51 homolog 2; Short=R51H2;
AltName: Full=RAD51 homolog B; AltName: Full=RAD51-like
protein 1
gi|26328691|dbj|BAC28084.1| unnamed protein product [Mus musculus]
gi|148670701|gb|EDL02648.1| RAD51-like 1 (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 350
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/350 (34%), Positives = 187/350 (53%), Gaps = 18/350 (5%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M++K + + L + + + I + LSL+ LELMK+ + V L VS+
Sbjct: 1 MSSKKLRRVGLSPELCDRLSRYQIVNCQHFLSLSPLELMKVTGLSYRGVHELLHTVSKAC 60
Query: 61 CPPFQTALLLMEQRAATEHLG-GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
P QTA L +R+A HL L T L LD AL GGVP G +TE+ GP G GKTQFC
Sbjct: 61 APQMQTAYELKTRRSA--HLSPAFLSTTLCALDEALHGGVPCGSLTEITGPPGCGKTQFC 118
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL 179
+ +S+LA LP GGL+G V+YID ES FT+ R++E+ S FP+ F+++ + R+
Sbjct: 119 IMMSVLATLPTSLGGLEGAVVYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVH 178
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG-----QHPLSWH 234
+ + + + LE ++ ++ VKL+++DS+ ++V + + G L
Sbjct: 179 LCRELTCEGLLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDPKLQGNIKERNKFLGKG 238
Query: 235 ISLITSLA-EFSRIPIVVTNQVRPQSHDESCLYPFQVQKM----DRILKDRTRYYSHIVA 289
SL+ LA EFS IP+++TNQ+ +H L P Q + D L + T S +VA
Sbjct: 239 ASLLKYLAGEFS-IPVILTNQI--TTHLSGAL-PSQADLVSPADDLSLSEGTSGSSCLVA 294
Query: 290 VLGFHWAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
LG W H V RL+L+ S +R + + KSP + +F +TI G+ L
Sbjct: 295 ALGNTWGHCVNTRLILQYLDSERRQILIAKSPLAAFTSFVYTIKGEGLVL 344
>gi|327280368|ref|XP_003224924.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Anolis
carolinensis]
Length = 395
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/355 (31%), Positives = 185/355 (52%), Gaps = 14/355 (3%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MA+K + LP+++ + ITT +D L L+ LELMK+ +V+ L VS+
Sbjct: 1 MASKKLRRAGLPQNLCERLSRHQITTCQDLLRLSLLELMKVTGQNYWKVQKLLNTVSQFC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QT + +R LPT L+ LD L GG+ G +TE+ GP+G GKTQFC+
Sbjct: 61 APRMQTVYEMKRKRTMNPSTA-FLPTTLEDLDKILHGGIACGSITEITGPSGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+SLLA LP GG G VIYID ES F++ R+IE+ FP F S+ M+ I +
Sbjct: 120 MMSLLATLPTSMGGFSGAVIYIDTESAFSAERLIEIAQHRFPHYFASEEKLISMSSSIYL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQ-----HPLSWHI 235
+ + + +E ++ ++ VKL+++DS+ ++V + + G + L+
Sbjct: 180 YRELTCDGVLKRIESLEEEIISKNVKLVILDSIASVVRKEFDTKLQGNLRERTNLLTKEA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI------LKDRTRYYSHIVA 289
S++ LAE IP+++TNQ+ + L + D + ++ ++ A
Sbjct: 240 SILKYLAEEFSIPVILTNQITTWLSEGLALQADLLSPADDLSLSEGPSRNGAGESGYVTA 299
Query: 290 VLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGISLLTDDG 343
LG W+H+V RL+L+ + Q R + + KSP++P +F + I SG+ +L D G
Sbjct: 300 ALGNTWSHSVNTRLILQYLNSQTRQLQIAKSPSAPFTSFLYVIEKSGL-VLQDSG 353
>gi|2262211|gb|AAB63359.1| RecA-like protein [Mus musculus]
Length = 350
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 122/350 (34%), Positives = 187/350 (53%), Gaps = 18/350 (5%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M++K + + L + + + I + LSL+ LELMK+ + V L VS+
Sbjct: 1 MSSKKLRRVGLSPELCDRLSRYLIVNCQHFLSLSPLELMKVTGLSYRGVHELLHTVSKAC 60
Query: 61 CPPFQTALLLMEQRAATEHLG-GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
P QTA L +R+A HL L T L LD AL GGVP G +TE+ GP G GKTQFC
Sbjct: 61 APQMQTAYELKTRRSA--HLSPAFLSTTLCALDEALHGGVPCGSLTEITGPPGCGKTQFC 118
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL 179
+ +S+LA LP GGL+G V+YID ES FT+ R++E+ S FP+ F+++ + R+
Sbjct: 119 IMMSVLATLPTSLGGLEGAVVYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVH 178
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG-----QHPLSWH 234
+ + + + LE ++ ++ VKL+++DS+ ++V + + G L
Sbjct: 179 LCRELTCEGLLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDPKLQGNIKERNKFLGKG 238
Query: 235 ISLITSLA-EFSRIPIVVTNQVRPQSHDESCLYPFQVQKM----DRILKDRTRYYSHIVA 289
SL+ LA EFS IP+++TNQ+ +H L P Q + D L + T S +VA
Sbjct: 239 ASLLKYLAGEFS-IPVILTNQI--TTHLSGAL-PSQADLVSPADDLSLSEGTSGSSCLVA 294
Query: 290 VLGFHWAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
LG W H V RL+L+ S +R + + KSP + +F +TI G+ L
Sbjct: 295 ALGNTWGHCVNTRLILQYLDSERRQILIAKSPLAAFTSFVYTIKGEGLVL 344
>gi|301763292|ref|XP_002917067.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Ailuropoda
melanoleuca]
Length = 344
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 182/349 (52%), Gaps = 16/349 (4%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLRRVGLSQELCDRLNRHQIVTCQDFLCLSPLELMKMTGLSYGGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA M+ R + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APQMQTAYG-MKMRTSASLSPAFLATTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ S E ++ ++ ++ VKL++IDS+ ++V + + G L+
Sbjct: 180 YRELSCDEVLRRIDSLEEEIISKGVKLVIIDSVASVVRKEFDTQLQGNMRERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQV-----RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
+ + LAE IP+++TNQ+ R + + P D L + + S + A
Sbjct: 240 ASLKYLAEEFSIPVILTNQITTHLSRALASQADLVSPAD----DLSLSEGSSGSSCVTAA 295
Query: 291 LGFHWAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
LG W+H+V RL+L+ S +R + + KSP +P +F++TI G+ L
Sbjct: 296 LGNTWSHSVNTRLILQYLGSERRQILIAKSPLAPFTSFAYTIKKEGLVL 344
>gi|303274861|ref|XP_003056745.1| Rad51 DNA recombinase 2 [Micromonas pusilla CCMP1545]
gi|226461097|gb|EEH58390.1| Rad51 DNA recombinase 2 [Micromonas pusilla CCMP1545]
Length = 437
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/391 (32%), Positives = 179/391 (45%), Gaps = 75/391 (19%)
Query: 23 NITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLG- 81
N TA+D L+ + L+L++LLDV L +A V++ VCP QTA+ L+ QR G
Sbjct: 25 NFRTAEDVLTRSSLDLVELLDVSLPTAERVVASVAKCVCPKPQTAMALLRQRGGGGGGGG 84
Query: 82 -------------------------GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKT 116
LPT L LD AL GGVP G ++ELVGPAG GKT
Sbjct: 85 TARSSSGARASASGDGGGGGGASWPAFLPTHLAALDLALKGGVPTGSISELVGPAGAGKT 144
Query: 117 QFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------- 165
QFCL L++ AA P GGLDGGV++ID E F+ R+ E+ + FP ++
Sbjct: 145 QFCLTLAVAAAAPKSVGGLDGGVVFIDTEQKFSGVRLAEIARAKFPSVYGDGDGDGAPSE 204
Query: 166 -HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV-----PG 219
++ + R+LVL P++LSE + L ++ +L+ + V+LLV+DSM AL G
Sbjct: 205 ADARASLTTLTSRVLVLTPSTLSEILQRLNGLEEALIDHGVRLLVVDSMAALARAEFGRG 264
Query: 220 VHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-----SHDES----------- 263
+QR Q L S++ AE + + VTNQV + HD
Sbjct: 265 QLQQR---QELLGQIASVLKQQAERLHLAVFVTNQVTTRIGAAAGHDTGPGAGREEGDGG 321
Query: 264 -CLYPFQVQKMDRILKD--RTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ--------- 311
+ D +D + A LG WAH V RLVLE +G
Sbjct: 322 GIGGGGGGAERDAGSRDAGSGSGSGSVTAALGTKWAHCVNTRLVLEGAAGGGDADAAGGG 381
Query: 312 -RFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
R + V KSP F + + G+ + D
Sbjct: 382 TRVVKVVKSPRCALAGFEYEVRAGGVVVDGD 412
>gi|119601365|gb|EAW80959.1| RAD51-like 1 (S. cerevisiae), isoform CRA_b [Homo sapiens]
Length = 420
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 168/318 (52%), Gaps = 7/318 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEAKSGQR 312
W+H+V RL+L+ +R
Sbjct: 300 WSHSVNTRLILQYLDSER 317
>gi|145350889|ref|XP_001419827.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580059|gb|ABO98120.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 351
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 175/352 (49%), Gaps = 19/352 (5%)
Query: 10 RLP---KSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQT 66
RLP +++A +R TA+DAL L++++L DV + R + V++ V P T
Sbjct: 10 RLPAVDQTLAAKLESRGCRTAEDALYRAPLDVVELADVSMHRARQFIISVAKAVAPTPTT 69
Query: 67 ALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126
AL + + ++P ++ +D AL GG+ G VTE+VG AG GKTQ CL A
Sbjct: 70 ALDALRR-------SQYVPLVIEDVDKALGGGLRVGAVTEVVGAAGAGKTQLCLAACASA 122
Query: 127 ALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSL 186
A PA GG DGGVIY+D E F+ R+ E+ FP F + +A R+ V+ PTSL
Sbjct: 123 AAPARVGGRDGGVIYVDAERKFSGARLAEIAREKFPGAFEDEESVHALARRVHVVTPTSL 182
Query: 187 SEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGV--HEQRAPGQHPLSWHISLITSLAEF 244
++ + L+ ++ +++ ++V+L++IDS+ L E+ Q L S + AE
Sbjct: 183 TDLNKRLDALEEAIIDHKVRLVIIDSIAHLARAEFGREKVVQRQSALGAVASTLKRHAEK 242
Query: 245 SRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLV 304
+ ++ NQV + + F D D S I A LG WAH V R+
Sbjct: 243 HALAVLAVNQVTTK------IGTFARHASDG-GDDVADESSGITAALGTKWAHCVNTRIA 295
Query: 305 LEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNLSS 356
LE +R + + KSP +P +F + ++ SGI + + V N+ S
Sbjct: 296 LEVLEDRRALKIVKSPLAPLTSFEYRVDASGIRVSGKSDAKDVRASEANVHS 347
>gi|392348948|ref|XP_576058.4| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog
2-like [Rattus norvegicus]
Length = 350
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/350 (33%), Positives = 183/350 (52%), Gaps = 18/350 (5%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M++K + L + + + I +D L+L+ LELMK+ + V L VS+
Sbjct: 1 MSSKKLRRAGLSQELCDRLCRYQIVNCQDFLNLSPLELMKVTGLSYRGVHELLHTVSKAC 60
Query: 61 CPPFQTALLLMEQRAATEHLG-GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
P QTA L +R+A HL L T L LD AL GGVP G +TE+ GP G GKTQFC
Sbjct: 61 APQMQTAYELKTRRSA--HLSPAFLSTTLGALDEALHGGVPCGSLTEVTGPPGCGKTQFC 118
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL 179
+ +S+LA LP GGL+G V+YID ES FT+ R++E+ S FP+ F+++ + R+
Sbjct: 119 IMMSVLATLPTRLGGLEGAVLYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVH 178
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV-----PGVHEQRAPGQHPLSWH 234
+ Q + + LE ++ ++ VKL+++DS+ ++V P + L
Sbjct: 179 LCQELTCEGLLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDPQLQGNIKERNKFLGKG 238
Query: 235 ISLITSLA-EFSRIPIVVTNQVRPQSHDESCLYPFQ---VQKMDRILKDRTRYYSH-IVA 289
SL+ L+ EFS +P+++TNQ+ +H L P Q V D + + S + A
Sbjct: 239 ASLLKYLSGEFS-VPVILTNQI--TTHLSGAL-PSQADLVSPADDLSPSEGKGSSSCLXA 294
Query: 290 VLGFHWAHAVTIRLVLEAKSGQRF-MNVEKSPTSPPLAFSFTINPSGISL 338
+G W H++ + L+ QR + + KSP +P +F +TI G+ L
Sbjct: 295 GIGRCWGHSIQTAIYLKYLFFQRNQILIAKSPVAPLTSFVYTIKGEGLVL 344
>gi|45685353|gb|AAS75434.1| putative Rad51B protein [Chlamydomonas reinhardtii]
Length = 392
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 173/369 (46%), Gaps = 45/369 (12%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MA + +S + L + + A N+TTA+D L L+ L+LM+LL + + LA VS +
Sbjct: 1 MATRHVSRLALDPYLRDHLIANNLTTARDVLLLSPLDLMELLGLTWTAAHQLLADVSAQI 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
PP+ TA + Q+A E L T L LD AL GVP G +TELVGP G GK+Q
Sbjct: 61 SPPYSTAYDVFTQQATAEA-PAPLRTGLPTLDGALRLGVPVGSITELVGPGGVGKSQLSH 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM-----------GASSFPEIFHSKG 169
L+L A+P GGL GV+YID E F++ R+ EM +
Sbjct: 120 MLALAVAMPEALGGLGAGVVYIDTERKFSAPRLQEMVHARVAEAAAAAGPQAAHVLQPLA 179
Query: 170 MAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG-- 227
+ E+ R+ V P S + +++E ++ ++LQ + +L+V+DS+ AL E P
Sbjct: 180 VQGEVLRRVAVSTPGSTEQLMQTVENLQHTVLQYRARLVVVDSIAAL--ARTEYGNPSSS 237
Query: 228 --------------------QHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
Q L + + +LAE RIP++VTNQV +
Sbjct: 238 GASGSVAGGGGGLVGSIMDRQQVLGRIAASLKALAESLRIPVLVTNQVTTR--------- 288
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAF 327
+ + A LG WAH V +RLVL+ +RF+ V KSP+ +
Sbjct: 289 IGGGGGGGPGPPGSAANGTLTAALGAKWAHCVNLRLVLQRLQERRFLKVAKSPSCANVVL 348
Query: 328 SFTINPSGI 336
+ I P+G+
Sbjct: 349 EYVIGPTGL 357
>gi|326920616|ref|XP_003206565.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Meleagris
gallopavo]
Length = 496
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 118/366 (32%), Positives = 184/366 (50%), Gaps = 17/366 (4%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MA K + +L + + + ITT +D L L+ LELMK+ V+ L VS
Sbjct: 1 MAAKKLRRAKLSQELCERLSRYQITTCQDFLCLSLLELMKVTGQSYRNVQKLLRKVSLAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA M+ R + + LPT L LD L GG+P G +TEL P G GKTQFC+
Sbjct: 61 APKMQTAYE-MKMRRSVDPSAAFLPTSLHSLDKVLHGGIPCGSLTELTSPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP GGLDG VIYID ES F++ R+IE+ + FP F S M + +
Sbjct: 120 TMSVLATLPVSMGGLDGAVIYIDTESAFSAERLIEIAGNRFPTYFDSDEKLFCMTRSVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQ-----HPLSWHI 235
+ + + + ++ ++ ++KL++IDS+ ++V + + G + L+
Sbjct: 180 YRELTCDSVLKRIRSLEEEIISKKIKLIIIDSVASVVRKEFDTKLQGNLAERSNFLARGA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYP-------FQVQKMDRILKDRTRYYSHIV 288
SL+ LAE IP+++TNQ+ S P + + + R + +
Sbjct: 240 SLLKYLAEEFSIPVILTNQI-TTSLSNGLAIPADLVSPAYDLSLSEGASGSGKRESACVT 298
Query: 289 AVLGFHWAHAVTIRLVLEAKS-GQRFMNVEKSPTSPPLAFSFTINPSGISL--LTDDGTE 345
A LG W+H+V RL+L+ R + V KSP +P F +TI SG+ L +T E
Sbjct: 299 AALGNTWSHSVNTRLILQYHDLLTRQILVAKSPVAPFSTFFYTIEKSGLVLQDVTRIHEE 358
Query: 346 MVVPET 351
++ P++
Sbjct: 359 LLAPKS 364
>gi|363734477|ref|XP_001232262.2| PREDICTED: DNA repair protein RAD51 homolog 2 [Gallus gallus]
Length = 371
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 113/350 (32%), Positives = 175/350 (50%), Gaps = 13/350 (3%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MA K + +L + + + ITT +D L L+ LELMK+ V+ L VS
Sbjct: 18 MATKKLRRAKLSQELCERLSRYQITTCQDFLCLSLLELMKVTGESYRNVQKLLRKVSLAC 77
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA M+ R + LPT L LD L GG+P G +TEL P G GKTQFC+
Sbjct: 78 APKMQTAYE-MKVRRSINPSAAFLPTSLHSLDKVLHGGIPCGSLTELTSPPGCGKTQFCI 136
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP GGLDG VIYID ES F++ R+IE+ + FP F S M I +
Sbjct: 137 TMSVLATLPVSMGGLDGAVIYIDTESAFSAERLIEIAGNRFPTYFDSDEKLFCMTRSIHL 196
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQ-----HPLSWHI 235
+ + + ++ ++ ++ ++KL++IDS+ ++V + + G + L+
Sbjct: 197 YRELTCDSVLKRIKSLEEEIISKKIKLIIIDSVASVVRKEFDTKLQGNLAERSNFLARGA 256
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHD-----ESCLYPFQVQKMDRILKDRTRYYSHIV-A 289
SL+ +AE IP+++TNQ+ + + P + + S V A
Sbjct: 257 SLLKYVAEEFSIPVILTNQITTSLSNGLAIPADLVSPAHDLSLSEGASGSGKKESACVTA 316
Query: 290 VLGFHWAHAVTIRLVLEAKS-GQRFMNVEKSPTSPPLAFSFTINPSGISL 338
LG W+H+V RL+L+ R + + KSP +P F +T+ SG+ L
Sbjct: 317 ALGNTWSHSVNTRLILQYHDLLTRQIVIAKSPVAPFSTFFYTVEKSGLVL 366
>gi|255641553|gb|ACU21050.1| unknown [Glycine max]
Length = 102
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/102 (75%), Positives = 85/102 (83%)
Query: 39 MKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGG 98
M+LLDV EV SA+A VSE+VCPP QTALLL+EQR E L GHL TRLKGLD ALCGG
Sbjct: 1 MELLDVGKEEVTSAMAHVSEVVCPPCQTALLLLEQRVLNESLAGHLSTRLKGLDEALCGG 60
Query: 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVI 140
+PFGV+TELVGPAG GKTQFCLKLSLLA+LP + GGLDG VI
Sbjct: 61 IPFGVLTELVGPAGIGKTQFCLKLSLLASLPTNCGGLDGRVI 102
>gi|335772663|gb|AEH58136.1| DNA repair protein RAD51-like protein 2 [Equus caballus]
Length = 284
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 142/260 (54%), Gaps = 6/260 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLRRVGLSQELCDRLSRHQIVTCRDFLCLSPLELMKMTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A LPT L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APQMQTAYGIKTQRSAALS-PAFLPTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP GGL+G V+YID E+ F++ R++E+ S FP F+++ + + +
Sbjct: 120 MMSILATLPIDMGGLEGAVVYIDTEAAFSAERLVEIAESRFPSYFNNEDKLLLTSSNVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ S E + +E ++ ++ VKL++IDS+ ++V + + G L+
Sbjct: 180 YRELSCDEVLQRVESLEEEIISKGVKLVIIDSVASVVRKEFDTQLQGNMRERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQV 255
+ + LAE IP+++TNQ+
Sbjct: 240 ASLKYLAEEFSIPVILTNQI 259
>gi|395509187|ref|XP_003758884.1| PREDICTED: DNA repair protein RAD51 homolog 2-like, partial
[Sarcophilus harrisii]
Length = 253
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 137/248 (55%), Gaps = 6/248 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANK ++ + LP+ + + I T +D L L+ LELMK+ VR L VS
Sbjct: 1 MANKKLTRVGLPQDLCDRLNRHQIVTCQDFLCLSPLELMKMTGQSYQGVRELLYTVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA M+ +++ L T L LD AL GGVP G +TE+ GP+G GKTQFC+
Sbjct: 61 APQMQTAYG-MKFEKSSDLSSAFLATTLTSLDEALHGGVPCGSLTEVTGPSGCGKTQFCM 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+L LP GGL+G VIYID ES F++ R+I + FP F++ M+ +I +
Sbjct: 120 MMSVLTTLPTVMGGLEGSVIYIDTESAFSAERLIRIAEFRFPSFFNTGEKLLSMSSKIHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQ-----HPLSWHI 235
Q + ++ + +E ++ ++ N VKLL+IDS+ ++V + + G + L+
Sbjct: 180 YQELTCNDVLKRIESLEEEIISNGVKLLIIDSVASVVRKEFDTQLQGNMRERSNFLAREA 239
Query: 236 SLITSLAE 243
SL+ LAE
Sbjct: 240 SLLKYLAE 247
>gi|326435196|gb|EGD80766.1| hypothetical protein PTSG_01354 [Salpingoeca sp. ATCC 50818]
Length = 366
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 175/346 (50%), Gaps = 39/346 (11%)
Query: 4 KLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP 63
+ ++ +R P + + A++ ITT D L L LEL+ L + E + ++ V P
Sbjct: 8 RRVASLREP--VTSFLASKKITTVADVLVLNILELLDL-GIAYDEATHLIDACTKAVAPE 64
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
QT L ++E+R LPT L LD L GG+P G++TE+ GP+G GKTQFC+ ++
Sbjct: 65 PQTVLEMLEERKR------FLPTTLPTLDRNLAGGLPIGMITEVAGPSGCGKTQFCMMMT 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+AA+ + G GGV+Y+D E +F+++R++ M + FP + +M+ RI V+
Sbjct: 119 SVAAVGVN-GHEPGGVLYLDTEGSFSNKRLVAMASQRFPVQLATNEALVDMSKRIQVITT 177
Query: 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLIT 239
+ +E LE + V +++ + +L+++DS +L+ G ++R + L+ +L+
Sbjct: 178 KTSAELLRVLETLDVRIVEMKARLVILDSAASLLRKEYQGNQQER---RDVLAREATLLK 234
Query: 240 SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAV 299
A+ IP++VTNQV + D F + A LG WAH+V
Sbjct: 235 RWAQTYAIPVLVTNQVTTRFDDNQGGDAF------------------VTAALGNTWAHSV 276
Query: 300 TIRLVLE--AKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDG 343
RL + RF++V KSP + ++ I G L+ DD
Sbjct: 277 NTRLTVNFAPSDALRFLSVIKSPLVASSSIAYRITDQG--LVEDDA 320
>gi|149051555|gb|EDM03728.1| similar to RAD51-like 1 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 319
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 145/262 (55%), Gaps = 10/262 (3%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M++K + L + + + I +D L+L+ LELMK+ + V L VS+
Sbjct: 1 MSSKKLRRAGLSQELCDRLCRYQIVNCQDFLNLSPLELMKVTGLSYRGVHELLHTVSKAC 60
Query: 61 CPPFQTALLLMEQRAATEHLG-GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
P QTA L +R+A HL L T L LD AL GGVP G +TE+ GP G GKTQFC
Sbjct: 61 APQMQTAYELKTRRSA--HLSPAFLSTTLGALDEALHGGVPCGSLTEVTGPPGCGKTQFC 118
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL 179
+ +S+LA LP GGL+G V+YID ES FT+ R++E+ S FP+ F+++ + R+
Sbjct: 119 IMMSVLATLPTRLGGLEGAVLYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVH 178
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV-----PGVHEQRAPGQHPLSWH 234
+ Q + + LE ++ ++ VKL+++DS+ ++V P + L
Sbjct: 179 LCQELTCEGLLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDPQLQGNIKERNKFLGKG 238
Query: 235 ISLITSLA-EFSRIPIVVTNQV 255
SL+ L+ EFS +P+++TNQ+
Sbjct: 239 ASLLKYLSGEFS-VPVILTNQI 259
>gi|320166280|gb|EFW43179.1| RAD51L1 [Capsaspora owczarzaki ATCC 30864]
Length = 358
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 159/326 (48%), Gaps = 51/326 (15%)
Query: 23 NITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCP-PFQTALLLMEQRAATEHLG 81
++ T KD L T EL + LD+ S + +A VS P P + + +L+ ++ + L
Sbjct: 26 SLRTCKDVLCRTPFELFQSLDLPRSAFDAMIAAVSHATAPVPRRVSDMLISRKTESTFL- 84
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
PT L LDAAL GG F +TELVGP+G GKTQFC+ L++ A+LP +GGL GGV+Y
Sbjct: 85 ---PTSLAQLDAALRGGFAFSTITELVGPSGCGKTQFCMMLAVQASLPLEHGGLGGGVVY 141
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
ID ES F++ R L+ + +++
Sbjct: 142 IDTESAFSATR----------------------------------------LDTLDQAIV 161
Query: 202 QNQVKLLVIDSMEALVPGVHEQRAPGQHP--LSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ KL+++DS+ +LV ++ ++ Q LS S++ LAE IPIVVTNQV
Sbjct: 162 ERGAKLVILDSVASLVRKEYDSKSMVQRTAYLSNVASVLKYLAESFSIPIVVTNQVTTSV 221
Query: 260 HDESCLYPFQ---VQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMN 315
+ R + + A LG W+H V RLV+E + + R +
Sbjct: 222 SMRASFDGNNYGGASSAQRETDGVENVEAQVTAALGNTWSHCVNTRLVVEYVTDELRTVK 281
Query: 316 VEKSPTSPPLAFSFTINPSGISLLTD 341
+ KSP +P +FS+ I P G+ +++D
Sbjct: 282 IAKSPIAPCASFSYVIEPEGLVIVSD 307
>gi|255088451|ref|XP_002506148.1| Rad51 DNA recombinase 2 [Micromonas sp. RCC299]
gi|226521419|gb|ACO67406.1| Rad51 DNA recombinase 2 [Micromonas sp. RCC299]
Length = 440
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 150/329 (45%), Gaps = 46/329 (13%)
Query: 23 NITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLG- 81
N T +D L+ +L++LLDV L + V+ CP TA L++ R H
Sbjct: 25 NFRTCEDVLTRHPFDLVELLDVNLPVAEKIVTCVARACCPKPVTAKQLLDSRTDDPHGDD 84
Query: 82 -------------------GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ L LD AL GGVP G ++ELVGPAG GKTQ CL L
Sbjct: 85 DGSSGGGGGSSASSTRKTPAFVRAHLAPLDDALGGGVPTGSISELVGPAGAGKTQMCLTL 144
Query: 123 SLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF---HSKGMA------QE 173
+ A P GGL+ GV++ID E F+S+R+ E+ + FPE H+ A +
Sbjct: 145 ACACAAPKRCGGLESGVVFIDTEQRFSSQRLAEIARAKFPETLSPAHAPDAASAERELES 204
Query: 174 MAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV-----PGVHEQRAPGQ 228
+ RILVL P++LSE + L ++ +L+ V+LL++DS+ AL G QR Q
Sbjct: 205 LTSRILVLTPSTLSEMLQRLNGLEEALIDRGVRLLIVDSVAALARAQFGRGQLTQR---Q 261
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQ-------SHDESCLYPFQVQKMDRILKDRT 281
L S + LAE + VTNQV + +HD + +
Sbjct: 262 ELLGQIASALKQLAERLGMAAFVTNQVTTRVGARVRHAHDTAVRGGGGDTAGGGGDDADS 321
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSG 310
+ A LG WAH V RLVLE G
Sbjct: 322 --PGSVTAALGTKWAHCVNTRLVLEGAEG 348
>gi|392341149|ref|XP_003754266.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Rattus
norvegicus]
Length = 470
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 125/218 (57%), Gaps = 3/218 (1%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M++K + L + + + I +D L+L+ LELMK+ + V L VS+
Sbjct: 1 MSSKKLRRAGLSQELCDRLCRYQIVNCQDFLNLSPLELMKVTGLSYRGVHELLHTVSKAC 60
Query: 61 CPPFQTALLLMEQRAATEHLG-GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
P QTA L +R+A HL L T L LD AL GGVP G +TE+ GP G GKTQFC
Sbjct: 61 APQMQTAYELKTRRSA--HLSPAFLSTTLGALDEALHGGVPCGSLTEVTGPPGCGKTQFC 118
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL 179
+ +S+LA LP GGL+G V+YID ES FT+ R++E+ S FP+ F+++ + R+
Sbjct: 119 IMMSVLATLPTRLGGLEGAVLYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVH 178
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217
+ Q + + LE ++ ++ VKL+++DS+ ++V
Sbjct: 179 LCQELTCEGLLQRLESLEEEIISKGVKLVIVDSIASVV 216
>gi|334310651|ref|XP_001378467.2| PREDICTED: DNA repair protein RAD51 homolog 2-like [Monodelphis
domestica]
Length = 268
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 142/256 (55%), Gaps = 7/256 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MA K ++ + L + + + + + T +D L L+ LELMK+ V L +VS
Sbjct: 1 MATKKLTRIGLSQDLCDRLSRHQVVTCQDFLCLSPLELMKVTGQSYQGVSELLYVVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + +++ L T L LD AL GGV G +TE+ GP+G GKTQFC+
Sbjct: 61 APQMQTAYEMKLEKSGGPS-SAFLATTLISLDEALHGGVACGSLTEITGPSGCGKTQFCM 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP GGL+G VIYID ES F++ R+I + FP F+++ M+ +I +
Sbjct: 120 MMSVLATLPTGMGGLEGAVIYIDTESAFSAERLIRIAEFRFPSFFNTEEKLLSMSSKIHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQ-----HPLSWHI 235
+ + +E + +E ++ ++ N+VKLL+IDS+ ++V + + G + L+
Sbjct: 180 YKELTCNEVLKRIESLEEEIISNRVKLLIIDSVASVVRKEFDTQLQGNMRERSNFLAREA 239
Query: 236 SLITSLA-EFSRIPIV 250
SL+ LA EFS I I+
Sbjct: 240 SLLKYLAEEFSIIVIM 255
>gi|355758569|gb|EHH61497.1| hypothetical protein EGM_21060, partial [Macaca fascicularis]
Length = 253
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 125/217 (57%), Gaps = 1/217 (0%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKMTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYEIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP H GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTHMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217
+ + E + +E ++ ++ ++L++IDS+ ++V
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIRLVIIDSVASVV 216
>gi|149051556|gb|EDM03729.1| similar to RAD51-like 1 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 258
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 125/218 (57%), Gaps = 3/218 (1%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M++K + L + + + I +D L+L+ LELMK+ + V L VS+
Sbjct: 1 MSSKKLRRAGLSQELCDRLCRYQIVNCQDFLNLSPLELMKVTGLSYRGVHELLHTVSKAC 60
Query: 61 CPPFQTALLLMEQRAATEHLG-GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
P QTA L +R+A HL L T L LD AL GGVP G +TE+ GP G GKTQFC
Sbjct: 61 APQMQTAYELKTRRSA--HLSPAFLSTTLGALDEALHGGVPCGSLTEVTGPPGCGKTQFC 118
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL 179
+ +S+LA LP GGL+G V+YID ES FT+ R++E+ S FP+ F+++ + R+
Sbjct: 119 IMMSVLATLPTRLGGLEGAVLYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVH 178
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217
+ Q + + LE ++ ++ VKL+++DS+ ++V
Sbjct: 179 LCQELTCEGLLQRLESLEEEIISKGVKLVIVDSIASVV 216
>gi|357588408|ref|NP_001239491.1| DNA repair protein RAD51 homolog 2 isoform 2 [Mus musculus]
gi|12854237|dbj|BAB29970.1| unnamed protein product [Mus musculus]
gi|148670700|gb|EDL02647.1| RAD51-like 1 (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 258
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 125/218 (57%), Gaps = 3/218 (1%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M++K + + L + + + I + LSL+ LELMK+ + V L VS+
Sbjct: 1 MSSKKLRRVGLSPELCDRLSRYQIVNCQHFLSLSPLELMKVTGLSYRGVHELLHTVSKAC 60
Query: 61 CPPFQTALLLMEQRAATEHLG-GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
P QTA L +R+A HL L T L LD AL GGVP G +TE+ GP G GKTQFC
Sbjct: 61 APQMQTAYELKTRRSA--HLSPAFLSTTLCALDEALHGGVPCGSLTEITGPPGCGKTQFC 118
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL 179
+ +S+LA LP GGL+G V+YID ES FT+ R++E+ S FP+ F+++ + R+
Sbjct: 119 IMMSVLATLPTSLGGLEGAVVYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVH 178
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217
+ + + + LE ++ ++ VKL+++DS+ ++V
Sbjct: 179 LCRELTCEGLLQRLESLEEEIISKGVKLVIVDSIASVV 216
>gi|281349378|gb|EFB24962.1| hypothetical protein PANDA_005235 [Ailuropoda melanoleuca]
Length = 253
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 134/254 (52%), Gaps = 6/254 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLRRVGLSQELCDRLNRHQIVTCQDFLCLSPLELMKMTGLSYGGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA M+ R + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APQMQTAYG-MKMRTSASLSPAFLATTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ S E ++ ++ ++ VKL++IDS+ ++V + + G L+
Sbjct: 180 YRELSCDEVLRRIDSLEEEIISKGVKLVIIDSVASVVRKEFDTQLQGNMRERNKFLAREA 239
Query: 236 SLITSLAEFSRIPI 249
+ + LAE IP+
Sbjct: 240 ASLKYLAEEFSIPV 253
>gi|431904503|gb|ELK09886.1| DNA repair protein RAD51 like protein 2 [Pteropus alecto]
Length = 295
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 123/217 (56%), Gaps = 1/217 (0%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + T +D L L+ LELMK+ + V + +VS
Sbjct: 33 MGSKKLRRVGLSQELCDRLNRFQVVTCQDFLCLSPLELMKMTGLSYRGVHELVYVVSRAC 92
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+ T L L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 93 APQMQTAYGMKTQRS-TALLPAFLSTTLSALDEALRGGVACGSLTEITGPPGCGKTQFCI 151
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+ + + ++ +
Sbjct: 152 MMSVLATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNDEEKLLLTSSKVHL 211
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217
+ + E + +E ++ ++ VKL++IDS+ ++V
Sbjct: 212 YRELNCDEVLQRIESLEEEIISKGVKLVIIDSVASVV 248
>gi|449274710|gb|EMC83788.1| DNA repair protein RAD51 like protein 2, partial [Columba livia]
Length = 253
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 131/254 (51%), Gaps = 6/254 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MA K + RL + + + ITT +D L L+ LELMK+ +V+ L VS
Sbjct: 1 MATKKLRRARLSQELCERLSRHQITTCQDFLCLSLLELMKVTGQSYYDVQKLLCKVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA M+ + + L T L LD L GGVP G +TE+ P G GKTQFC+
Sbjct: 61 APKMQTAYE-MKLKKSVSPSSAFLSTTLHSLDKVLHGGVPCGSLTEITSPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP GGL+G VIYID ES F++ R+IE+ + P F S M + V
Sbjct: 120 MMSVLATLPLSMGGLNGAVIYIDTESAFSAERLIEIAGNRLPTYFDSDEKLFCMTRSVHV 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQ-----HPLSWHI 235
+ + + + ++ ++ +VKL++IDS+ ++V + + G + L+
Sbjct: 180 YRDLTCGSVLKRIMSLEEEIISKKVKLIIIDSVASVVRKEFDTKLQGNLAERSNFLARGA 239
Query: 236 SLITSLAEFSRIPI 249
S++ LAE IP+
Sbjct: 240 SMLKYLAEEFSIPV 253
>gi|34849608|gb|AAH58184.1| Rad51l1 protein [Mus musculus]
Length = 248
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 136/246 (55%), Gaps = 15/246 (6%)
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163
+TE+ GP G GKTQFC+ +S+LA LP GGL+G V+YID ES FT+ R++E+ S FP+
Sbjct: 1 MTEITGPPGCGKTQFCIMMSVLATLPTSLGGLEGAVVYIDTESAFTAERLVEIAESRFPQ 60
Query: 164 IFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ 223
F+++ + R+ + + + + LE ++ ++ VKL+++DS+ ++V +
Sbjct: 61 YFNTEEKLLLTSSRVHLCRELTCEGLLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDP 120
Query: 224 RAPG-----QHPLSWHISLITSLA-EFSRIPIVVTNQVRPQSHDESCLYPFQVQKM---- 273
+ G L SL+ LA EFS IP+++TNQ+ +H L P Q +
Sbjct: 121 KLQGNIKERNKFLGKGASLLKYLAGEFS-IPVILTNQI--TTHLSGAL-PSQADLVSPAD 176
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTIN 332
D L + T S +VA LG W H V RL+L+ S +R + + KSP + +F +TI
Sbjct: 177 DLSLSEGTSGSSCLVAALGNTWGHCVNTRLILQYLDSERRQILIAKSPLAAFTSFVYTIK 236
Query: 333 PSGISL 338
G+ L
Sbjct: 237 GEGLVL 242
>gi|148670703|gb|EDL02650.1| RAD51-like 1 (S. cerevisiae), isoform CRA_d [Mus musculus]
Length = 174
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 100/169 (59%), Gaps = 3/169 (1%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M++K + + L + + + I + LSL+ LELMK+ + V L VS+
Sbjct: 1 MSSKKLRRVGLSPELCDRLSRYQIVNCQHFLSLSPLELMKVTGLSYRGVHELLHTVSKAC 60
Query: 61 CPPFQTALLLMEQRAATEHLG-GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
P QTA L +R+A HL L T L LD AL GGVP G +TE+ GP G GKTQFC
Sbjct: 61 APQMQTAYELKTRRSA--HLSPAFLSTTLCALDEALHGGVPCGSLTEITGPPGCGKTQFC 118
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSK 168
+ +S+LA LP GGL+G V+YID ES FT+ R++E+ S FP+ F+++
Sbjct: 119 IMMSVLATLPTSLGGLEGAVVYIDTESAFTAERLVEIAESRFPQYFNTE 167
>gi|298714477|emb|CBJ27499.1| Rad51 DNA recombinase 2 [Ectocarpus siliculosus]
Length = 335
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 137/255 (53%), Gaps = 12/255 (4%)
Query: 11 LPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP-FQTA-L 68
L + + A+ + TA D S TEL+L++ LD +V L VS + P +TA
Sbjct: 12 LDDDLVSRLASAGLHTAGDMFSKTELQLVQSLDASREKVVELLDYVSTRIVPEQAKTAGD 71
Query: 69 LLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
LL E+R A + T ++ LD AL GG P G++TELVGPAG GKTQ CL+++ A L
Sbjct: 72 LLRERREAGASF--FVATGIQPLDDALQGGFPTGMITELVGPAGIGKTQTCLQVAAQACL 129
Query: 129 PAHYGGL--DGGVIYIDVESTFTSRRMIEMGASSFP----EIFHSKGMAQEMAGRILVLQ 182
PA GGL D GV+Y+D E F+ R++E+ + P E KG + + ++ V
Sbjct: 130 PAKLGGLGEDAGVVYLDTERKFSPDRLVEIASERHPGHYGEFSTEKGSMERLLNQVTVFP 189
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPG--VHEQRAPGQHPLSWHISLITS 240
+ + + LE ++ ++++ V+L+V+DS+ AL E Q L+ +++ S
Sbjct: 190 VDNSAALVDRLETLQARMIESNVRLIVLDSIAALARRDFAREDTLSRQELLTRQAAVLKS 249
Query: 241 LAEFSRIPIVVTNQV 255
LA ++VTNQV
Sbjct: 250 LAYTFSAVVLVTNQV 264
>gi|390340444|ref|XP_797868.2| PREDICTED: DNA repair protein RAD51 homolog 2-like
[Strongylocentrotus purpuratus]
Length = 271
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 133/253 (52%), Gaps = 7/253 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MAN+ + + L + I I T +D L+ LEL+++ + +R A+ S
Sbjct: 1 MANRKVHRLGLDEDIVTRLTRHKILTCQDLLTKNRLELLRIFNTCEPRIREAIMKASRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P AL L E+ + G LPT L LD L GG+ G +TE+ GP G GKTQFC+
Sbjct: 61 APTSTKALQLCERNTGS--CPGFLPTSLTTLDQLLQGGLLLGTITEIAGPPGCGKTQFCM 118
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
LS+LA LP GG++G V+Y+D ES F++ RM+EM FP+ F S+ + ++ +
Sbjct: 119 MLSVLATLPVGMGGMNGSVMYLDTESAFSAERMVEMAQCRFPDYFLSEEALMNLVEKVHI 178
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR-----APGQHPLSWHI 235
++ S+ + LE ++ L++ ++L+++DS+ + V + R + LS
Sbjct: 179 SVESTCSDLLQRLETVEEDLIEKGIRLVILDSVASPVRKEFDGRLGRNMVERTNLLSKQA 238
Query: 236 SLITSLAEFSRIP 248
+++ LAE IP
Sbjct: 239 AILKYLAEEFSIP 251
>gi|351707532|gb|EHB10451.1| DNA repair protein RAD51-like protein 2 [Heterocephalus glaber]
Length = 179
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 2/166 (1%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M+NK + ++ L + + + + I T +D L L+ LE+MK+ + V L +VS
Sbjct: 1 MSNKKLRQVGLSQELCDCLSRHQIVTCRDFLCLSPLEVMKVTGLSYQGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P Q A + QR+A L L L LD A GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APQMQMAYGIKTQRSA-NCLAAFLSMTLSTLDEAH-GGVACGSLTEITGPPGCGKTQFCI 118
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFH 166
+S+LA LP GGL+G V+Y D ES F++ R+IE+ FP F+
Sbjct: 119 MMSVLATLPTSMGGLEGTVVYTDTESAFSAERLIEIAEFCFPRYFN 164
>gi|356547210|ref|XP_003542009.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog
2-like [Glycine max]
Length = 110
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 62/79 (78%)
Query: 39 MKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGG 98
M+LLDV EV SA+A S IVCPP QTALLL+EQR E L GHLPTRLKGLD LC G
Sbjct: 1 MELLDVGKEEVTSAMAHASGIVCPPCQTALLLLEQRVRNEFLVGHLPTRLKGLDEVLCCG 60
Query: 99 VPFGVVTELVGPAGTGKTQ 117
+PFGV+TELVGPAG GKTQ
Sbjct: 61 IPFGVLTELVGPAGIGKTQ 79
>gi|444706748|gb|ELW48071.1| DNA repair protein RAD51 like protein 2 [Tupaia chinensis]
Length = 236
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 45/254 (17%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L VS
Sbjct: 1 MGSKKLRRVGLSQELCDRLSRHQIVTCQDFLCLSPLELMKMTGLSYQGVHELLYTVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QT + GP G GKTQFC+
Sbjct: 61 APQMQT----------------------------------------VTGPPGCGKTQFCI 80
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGLDG V+YID ES F++ R++++ S FP F+++ + ++ +
Sbjct: 81 MMSVLATLPTYMGGLDGAVVYIDTESAFSAERLVKIAESRFPRYFNTEEKLLSTSSKVHL 140
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ VKL++IDS+ ++V + + G L+
Sbjct: 141 YRELTCDEVLQRIESLEEDIISKGVKLVIIDSVASVVRKEFDTQLQGNMKERNKFLAKEA 200
Query: 236 SLITSLAEFSRIPI 249
SL+ LAE IP+
Sbjct: 201 SLLKYLAEEFSIPV 214
>gi|156381934|ref|XP_001632310.1| predicted protein [Nematostella vectensis]
gi|156219364|gb|EDO40247.1| predicted protein [Nematostella vectensis]
Length = 238
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 7/224 (3%)
Query: 122 LSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL 181
LS+LA LP GGL VIYID E+ F++ RM+EM + FP +F ++ + +I V
Sbjct: 2 LSILATLPQDQGGLGANVIYIDTEAAFSATRMVEMAENRFPGLFENQNSVLSLTEKIHVF 61
Query: 182 QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQ-----HPLSWHIS 236
+ E L+ ++ ++ +VKL+V+DS+ +L+ + ++ + LS +
Sbjct: 62 WEPTCKALWERLQSLEEEVISRKVKLIVLDSVASLIRKEFDSQSSRNIKERTNLLSKEAA 121
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFHW 295
++ +AE IP+VVTNQ+ + + + +D + ++ H++A LG W
Sbjct: 122 ILKYIAETFNIPVVVTNQITSRFAPSKHVTEADIPDVDGVEVEADEEGSDHVIAALGNTW 181
Query: 296 AHAVTIRLVLE-AKSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
+HAV RL+++ R + + KSP +P F+++I G+ L
Sbjct: 182 SHAVNTRLIVQFLDETYRQVMIAKSPIAPFDVFTYSIQIEGLRL 225
>gi|28071138|emb|CAD61950.1| unnamed protein product [Homo sapiens]
Length = 231
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 120/224 (53%), Gaps = 7/224 (3%)
Query: 122 LSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL 181
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 2 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 61
Query: 182 QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHIS 236
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+ S
Sbjct: 62 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS 121
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFHW 295
+ LAE IP+++TNQ+ V D + L + T S ++A LG W
Sbjct: 122 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW 181
Query: 296 AHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 182 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 225
>gi|402876510|ref|XP_003902007.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Papio anubis]
Length = 231
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 119/224 (53%), Gaps = 7/224 (3%)
Query: 122 LSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL 181
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 2 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY 61
Query: 182 QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHIS 236
+ + E + +E ++ ++ +KL++IDS+ ++V + + G L+
Sbjct: 62 RELTCDEVLQRIESLEEEIISKGIKLVIIDSVASVVRKEFDTQLQGNLKERNKFLAREAC 121
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFHW 295
+ LAE IP+++TNQ+ V D + L + T S ++A LG W
Sbjct: 122 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPTDDLSLSEGTSGSSCVIAALGNTW 181
Query: 296 AHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 182 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 225
>gi|119719925|ref|YP_920420.1| DNA repair and recombination protein RadA [Thermofilum pendens Hrk
5]
gi|119525045|gb|ABL78417.1| DNA repair and recombination protein RadA [Thermofilum pendens Hrk
5]
Length = 358
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 133/297 (44%), Gaps = 45/297 (15%)
Query: 49 VRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELV 108
+RSA LV+ F TA L E+R E++ T ++ LD L GG+ G +TE +
Sbjct: 97 IRSAQRLVNR--GEEFITAKTLFEKRKNIEYI----STGVRSLDDLLEGGIEVGSITEFI 150
Query: 109 GPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSK 168
G G GKTQ C +LS++ LP GGL+ +Y+D E TF R++ +I ++
Sbjct: 151 GEFGAGKTQICHQLSVMVQLPKDKGGLNARALYVDTEGTFRPERIV--------QIARAR 202
Query: 169 GMAQEMAGRILVLQPTSLSEFTESL-EKIKVSLLQNQVKLLVIDSM----EALVPGVHEQ 223
G+ E ++ S+ L ++ K + + ++L+++DS+ A PG E
Sbjct: 203 GLDPEKTLENIIYARAYNSDHQMLLIDEAKKYIEKYNIRLIIVDSLINHFRAEYPG-REN 261
Query: 224 RAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRT 281
A Q L+ HIS + LA + +VVTNQV P + L P
Sbjct: 262 LASRQQKLNKHISQLHRLASLYNLAVVVTNQVMASPDIFFGNPLKP-------------- 307
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
G AH T R+ L +AK G+R + SP +F I G++
Sbjct: 308 --------AGGNIMAHGCTYRIWLRKAKEGKRIARIIDSPKHAEKEVAFAITEDGVT 356
>gi|327311698|ref|YP_004338595.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis
768-20]
gi|326948177|gb|AEA13283.1| DNA repair and recombination protein RadA [Thermoproteus uzoniensis
768-20]
Length = 337
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 134/296 (45%), Gaps = 49/296 (16%)
Query: 50 RSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVG 109
RS L L S F +AL + +R + + T ++ LD L GGV G VTE+ G
Sbjct: 82 RSMLGLSS------FISALDVYRKRVNIKRI----STGVRSLDELLNGGVETGAVTEVAG 131
Query: 110 PAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKG 169
G GKTQFC +L+++ LP GGL+ IYID E+TF R+ +M ++G
Sbjct: 132 EFGAGKTQFCHQLAVMVQLPEDRGGLNAKAIYIDTENTFRPERITQMA--------RARG 183
Query: 170 MAQEMAGRILVLQPTSLSEFTESL-EKIKVSLLQNQVKLLVIDSM----EALVPGVHEQR 224
+ + A + + S+ L E+ + + Q+ VKLLV+DS+ A PG E
Sbjct: 184 LDPDQALKNIYYARAYSSDHQMILVEQARRIIKQDNVKLLVVDSIVAHFRAEFPG-RENL 242
Query: 225 APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTR 282
A Q L+ HI+ + +A+ + +VVTNQV +P + L P
Sbjct: 243 AERQQKLNKHIADLLKIADAYDVAVVVTNQVMAQPDVFFGNPLRP--------------- 287
Query: 283 YYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
G AH T R+ L ++K R + SP P +F I G++
Sbjct: 288 -------AGGNVLAHGATYRIWLRKSKENIRIAKIFDSPYHPEREATFKITEEGLT 336
>gi|26345474|dbj|BAC36388.1| unnamed protein product [Mus musculus]
Length = 384
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 129/288 (44%), Gaps = 44/288 (15%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 95 TALELLEQ----EHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVD 150
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMG----------ASSFPEIFHSKGMAQEMA 175
+P +GG+ G ++ID E +F R++ + A + E H K +
Sbjct: 151 VQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTL 210
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLLQN--QVKLLVIDSMEALVPGVH--EQRAPGQ 228
IL + ++TE L ++ + L + +VKL++ID + P H E +
Sbjct: 211 ENILSHIYYFRCHDYTELLAQVYLLPDFLSDHPKVKLVIIDGIA--FPFRHDLEDLSLRT 268
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIV 288
L+ + SLA R+ +++TNQ+ K+D + + +V
Sbjct: 269 RLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID-------KNQALLV 307
Query: 289 AVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
LG W HA TIRL+ + QRF + KSP+ F I P G
Sbjct: 308 PALGESWGHAATIRLIFHWEQKQRFATLYKSPSQKESTIPFQITPQGF 355
>gi|410962513|ref|XP_003987813.1| PREDICTED: DNA repair protein RAD51 homolog 2-like, partial [Felis
catus]
Length = 166
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 93/160 (58%), Gaps = 5/160 (3%)
Query: 107 LVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFH 166
+ GP G GKTQFC+ +S+LA LP + GGL+GGV+YID ES F++ R++E+ S FP F+
Sbjct: 1 ITGPPGCGKTQFCMMMSILATLPTNMGGLEGGVVYIDTESAFSAERLVEIAESRFPRYFN 60
Query: 167 SKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP 226
++ + ++ + + S E + +E ++ ++ +VKL++IDS+ ++V + +
Sbjct: 61 TEEKLLLTSSKVHLYRELSCDEVLQRIESLEEEIISKRVKLVIIDSVASVVRKEFDAQLQ 120
Query: 227 GQHP-----LSWHISLITSLAEFSRIPIVVTNQVRPQSHD 261
G L+ + + LAE IP +V +++ +D
Sbjct: 121 GNMRERNKFLAREAATLKYLAEEFSIPDLVGSKLPEVDYD 160
>gi|410933223|ref|XP_003979991.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Takifugu
rubripes]
Length = 346
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 123/261 (47%), Gaps = 39/261 (14%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LDAAL GG P G VTE+ G G GKTQ CL+L++ A +P +GG+ G V+YID E +F
Sbjct: 90 LDAALGGGAPVGRVTEVCGVPGVGKTQLCLQLAVDAQVPRCFGGVGGQVVYIDTEGSFLI 149
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLS-----------EFTESLEKIKV- 198
+R+ ++ A++ + H + ++ R+ + T S ++ E L ++ +
Sbjct: 150 QRVADLAAAA---VNHCSLLVEDQEQRVAMETFTVESILSNMFVVRCHDYIELLAELHLM 206
Query: 199 -SLLQN--QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
L + +V+LLVIDS+ + + ++ LS + S+A I +V+TNQ+
Sbjct: 207 PGFLSDHPRVRLLVIDSVASPFRPLFDELLQRTRLLSGFAQQLLSMATSHDIAVVITNQM 266
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMN 315
+ S +V LG W HA TIRL+L+ + QR
Sbjct: 267 TTRVQGAQ---------------------SQLVPALGDSWGHAATIRLLLQWEGPQRLAI 305
Query: 316 VEKSPTSPPLAFSFTINPSGI 336
+ KSP +TI G
Sbjct: 306 IVKSPCHRVSTVRYTITSEGF 326
>gi|17402896|ref|NP_478123.1| DNA repair protein RAD51 homolog 3 isoform 1 [Homo sapiens]
gi|3914534|sp|O43502.1|RA51C_HUMAN RecName: Full=DNA repair protein RAD51 homolog 3; Short=R51H3;
AltName: Full=RAD51 homolog C; AltName: Full=RAD51-like
protein 2
gi|2909801|gb|AAC39604.1| Rad51C [Homo sapiens]
gi|47777661|gb|AAT38108.1| RAD51 homolog C (S. cerevisiae) [Homo sapiens]
gi|78070501|gb|AAI07754.1| RAD51 homolog C (S. cerevisiae) [Homo sapiens]
gi|119614839|gb|EAW94433.1| RAD51 homolog C (S. cerevisiae), isoform CRA_d [Homo sapiens]
gi|261860596|dbj|BAI46820.1| RAD51 homolog C [synthetic construct]
Length = 376
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 134/315 (42%), Gaps = 65/315 (20%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 86 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 141
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 142 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTL 201
Query: 176 GRILV-LQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQ 228
IL + ++TE L +V LL ++V+L+++D + P H+
Sbjct: 202 DNILSHIYYFRCRDYTELL--AQVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----L 252
Query: 229 HPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
LS L+ SLA R+ +++TNQ+ K+D
Sbjct: 253 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID------- 291
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
R + +V LG W HA TIRL+ QR + KSP+ F I P G
Sbjct: 292 RNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFR---- 347
Query: 342 DGTEMVVPETCNLSS 356
+ VV C+L +
Sbjct: 348 ---DTVVTSACSLQT 359
>gi|346644687|ref|NP_001231005.1| DNA repair protein RAD51 homolog 3 [Cricetulus griseus]
gi|81901537|sp|Q8R2J9.1|RA51C_CRIGR RecName: Full=DNA repair protein RAD51 homolog 3; Short=R51H3;
AltName: Full=RAD51 homolog C; AltName: Full=RAD51-like
protein 2
gi|19702129|emb|CAC88355.1| RAD51-like protein 2 [Cricetulus griseus]
Length = 366
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 147/350 (42%), Gaps = 66/350 (18%)
Query: 21 ARNITTAKDALSLTELELMKLLDVELSEVRSALALVSE------------IVCPPFQTAL 68
A TA+D L + EL K + + E L +V V TAL
Sbjct: 20 AAGFQTAEDVLGVKPSELSKEVGISKEEALETLQIVRRESLTDKPRCAGASVAGKKYTAL 79
Query: 69 LLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++ +
Sbjct: 80 ELLEQ----EHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQI 135
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMG----------ASSFPEIFHSKGMAQEMAGRI 178
P +GG+ G ++ID E +F R++ + A + + H K + I
Sbjct: 136 PECFGGVAGEAVFIDTEGSFMVDRVVTLANACIQHLHLIAGTHKDEEHQKALEGFTLENI 195
Query: 179 LV-LQPTSLSEFTESLEKIKV--SLLQN--QVKLLVIDSMEALVPGVHEQRAPGQHPLSW 233
L + ++TE L ++ + L N +V+L++ID + +P H+ LS
Sbjct: 196 LSHIYYFRCHDYTELLAQVYLLPDFLSNHSKVQLVIIDGIA--LPFRHD-----LDDLSL 248
Query: 234 HISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSH 286
L+ SLA R+ +++TNQ+ K+D + +
Sbjct: 249 RTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID-------KNQAL 287
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+V LG W HA TIRL+ + QRF + KSP+ F I P G
Sbjct: 288 LVPALGESWGHAATIRLIFHWEQKQRFATLYKSPSQKESTIPFQITPQGF 337
>gi|41615212|ref|NP_963710.1| DNA repair and recombination protein RadA [Nanoarchaeum equitans
Kin4-M]
gi|73913726|sp|Q74MX9.1|RADA_NANEQ RecName: Full=DNA repair and recombination protein RadA
gi|40068936|gb|AAR39271.1| NEQ426 [Nanoarchaeum equitans Kin4-M]
Length = 325
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 146/339 (43%), Gaps = 52/339 (15%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSAL-ALVSEIVCPPFQTALLL 70
PK+ + +A + K A + E ELM+ D+ + R + A + + F+TA +
Sbjct: 21 PKTAEKLISAGYDSLIKIASASVE-ELMEAADIGEATARKIIEAAMERLGLLEFKTAEEV 79
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+E+R T + T K LD+ L GG+ +TE G G+GKTQ +L++ LP
Sbjct: 80 LEERQKT----ARITTMSKNLDSLLGGGIETAALTEFYGEYGSGKTQVGHQLAVDVQLPP 135
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGAS-------SFPEIFHSKGMAQEMAGRILVLQP 183
GGL+G +YID E TF R+ +M + + ++H K + +L
Sbjct: 136 EQGGLEGKAVYIDTEGTFRPERIKQMAEALDLDPKKALKNVYHMKVFNTDHQ----MLAA 191
Query: 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240
E E I KL+V+DS+ AL + R A QH L H+ +
Sbjct: 192 RKAEELIRKGEPI---------KLIVVDSLTALFRAEYTGRGQLAERQHKLGRHVHDLLR 242
Query: 241 LAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
+AE + I VTNQV +P S + +D + AV G AHA
Sbjct: 243 IAELYNVAIYVTNQVMAKPDSF---------IPGLD-----------SVQAVGGHVLAHA 282
Query: 299 VTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
T R+ L + K G R + SP P +F I GI
Sbjct: 283 STYRVFLRKGKKGIRIARLVDSPHLPERETTFVITEEGI 321
>gi|348567412|ref|XP_003469493.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Cavia
porcellus]
Length = 367
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 125/286 (43%), Gaps = 40/286 (13%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 78 TALDLLEQ----EHTQGFIVTFCSALDDILGGGIPLMKTTEICGAPGVGKTQLCMQLAVT 133
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F RM+++ + + H K +
Sbjct: 134 VQIPECFGGVAGEAVFIDTEGSFMVDRMVDLATACIQHLQLIAGIHMDQEHQKALEDFTL 193
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLLQN--QVKLLVIDSMEALVPGVHEQRAPGQHP 230
IL + ++TE L ++ + L + +++L+++D + + +
Sbjct: 194 ENILSHIYYFRCHDYTELLAQVYLLPDFLSDHSKIRLVIVDGIAFPFRHDFDDLSLRTRL 253
Query: 231 LSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
L+ + SLA R+ +++TNQ+ K+D + + +V
Sbjct: 254 LNGLAQQMISLANHHRLAVILTNQM--------------TTKID-------KNQALLVPA 292
Query: 291 LGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
LG W HA TIRL+ QR + KSP+ F I P G
Sbjct: 293 LGESWGHAATIRLIFHWDQKQRLATLYKSPSQRECTVLFEITPQGF 338
>gi|16716605|ref|NP_444499.1| DNA repair protein RAD51 homolog 3 [Mus musculus]
gi|81902682|sp|Q924H5.1|RA51C_MOUSE RecName: Full=DNA repair protein RAD51 homolog 3; Short=R51H3;
AltName: Full=RAD51 homolog C; AltName: Full=RAD51-like
protein 2
gi|14276845|gb|AAK58420.1|AF324883_1 RAD51L2/RAD51C protein [Mus musculus]
gi|60422796|gb|AAH90648.1| RAD51 homolog c (S. cerevisiae) [Mus musculus]
gi|148683867|gb|EDL15814.1| Rad51 homolog c (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 366
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 129/288 (44%), Gaps = 44/288 (15%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMG----------ASSFPEIFHSKGMAQEMA 175
+P +GG+ G ++ID E +F R++ + A + E H K +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLLQN--QVKLLVIDSMEALVPGVH--EQRAPGQ 228
IL + ++TE L ++ + L + +V+L++ID + P H E +
Sbjct: 193 ENILSHIYYFRCHDYTELLAQVYLLPDFLSDHPKVQLVIIDGIA--FPFRHDLEDLSLRT 250
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIV 288
L+ + SLA R+ +++TNQ+ K+D + + +V
Sbjct: 251 RLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID-------KNQALLV 289
Query: 289 AVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
LG W HA TIRL+ + QRF + KSP+ F I P G
Sbjct: 290 PALGESWGHAATIRLIFHWEQKQRFATLYKSPSQKESTIPFQITPQGF 337
>gi|187954697|gb|AAI41035.1| RAD51 homolog c (S. cerevisiae) [Mus musculus]
Length = 366
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 129/288 (44%), Gaps = 44/288 (15%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMG----------ASSFPEIFHSKGMAQEMA 175
+P +GG+ G ++ID E +F R++ + A + E H K +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLLQN--QVKLLVIDSMEALVPGVH--EQRAPGQ 228
IL + ++TE L ++ + L + +V+L++ID + P H E +
Sbjct: 193 ENILSHIYYFRCHDYTELLAQVYLLPDFLSDHPKVQLVIIDGIA--FPFRHDLEDLSLRT 250
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIV 288
L+ + SLA R+ +++TNQ+ K+D + + +V
Sbjct: 251 RLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID-------KNQALLV 289
Query: 289 AVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
LG W HA TIRL+ + QRF + KSP+ F I P G
Sbjct: 290 PALGESWGHAATIRLIFHWEQKQRFATLYKSPSQKESTIPFQITPQGF 337
>gi|148683866|gb|EDL15813.1| Rad51 homolog c (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 386
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 143/320 (44%), Gaps = 50/320 (15%)
Query: 36 LELMKLLDVEL--SEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
LE +++L E ++ R A V+ C TAL L+EQ EH G + T LD
Sbjct: 69 LETLQILRRECLTNKPRCAGTSVANEKC----TALELLEQ----EHTQGFIITFCSALDN 120
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+P TE+ G G GKTQ C++L++ +P +GG+ G ++ID E +F R+
Sbjct: 121 ILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRV 180
Query: 154 IEMG----------ASSFPEIFHSKGMAQEMAGRILV-LQPTSLSEFTESLEKIKV--SL 200
+ + A + E H K + IL + ++TE L ++ +
Sbjct: 181 VSLATACIQHLHLIAGTHTEEEHQKALKDFTLENILSHIYYFRCHDYTELLAQVYLLPDF 240
Query: 201 LQN--QVKLLVIDSMEALVPGVH--EQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256
L + +V+L++ID + P H E + L+ + SLA R+ +++TNQ+
Sbjct: 241 LSDHPKVQLVIIDGIA--FPFRHDLEDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM- 297
Query: 257 PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNV 316
K+D + + +V LG W HA TIRL+ + QRF +
Sbjct: 298 -------------TTKID-------KNQALLVPALGESWGHAATIRLIFHWEQKQRFATL 337
Query: 317 EKSPTSPPLAFSFTINPSGI 336
KSP+ F I P G
Sbjct: 338 YKSPSQKESTIPFQITPQGF 357
>gi|358417193|ref|XP_613584.5| PREDICTED: DNA repair protein RAD51 homolog 3 [Bos taurus]
gi|359076460|ref|XP_002695646.2| PREDICTED: DNA repair protein RAD51 homolog 3 [Bos taurus]
Length = 371
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 126/301 (41%), Gaps = 70/301 (23%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQNFIITFCSALDNILGGGIPLTKTTEICGAPGVGKTQLCMQLAID 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
+P +GG++G ++ID E +F R++++ + + G E P +
Sbjct: 133 VQIPECFGGVEGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAGTHMEEE------HPKA 186
Query: 186 LSEFTESLEKI-----------------KVSLLQN------QVKLLVIDSMEALVPGVHE 222
L +FT LE I +V LL + +V+L+++D + P H+
Sbjct: 187 LQDFT--LENILSHIYYFRCRDYTELLAQVYLLSDFLSEHSKVRLVIVDGIA--FPFRHD 242
Query: 223 QRAPGQHPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
LS L+ SLA R+ +++TNQ+ K D
Sbjct: 243 -----LDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKFD- 282
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSG 335
R + +V LG W HA TIRL+ QR + KSP+ F I P G
Sbjct: 283 ------RNQALLVPALGESWGHAATIRLIFHWDQKQRLATLYKSPSQKESTVPFQITPQG 336
Query: 336 I 336
Sbjct: 337 F 337
>gi|440902018|gb|ELR52867.1| DNA repair protein RAD51-like protein 3, partial [Bos grunniens
mutus]
Length = 368
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 126/301 (41%), Gaps = 70/301 (23%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 79 TALELLEQ----EHTQNFIITFCSALDNILGGGIPLTKTTEICGAPGVGKTQLCMQLAID 134
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
+P +GG++G ++ID E +F R++++ + + G E P +
Sbjct: 135 VQIPECFGGVEGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAGTHMEEE------HPKA 188
Query: 186 LSEFTESLEKI-----------------KVSLLQN------QVKLLVIDSMEALVPGVHE 222
L +FT LE I +V LL + +V+L+++D + P H+
Sbjct: 189 LQDFT--LENILSHIYYFRCRDYTELLAQVYLLSDFLSEHSKVRLVIVDGIA--FPFRHD 244
Query: 223 QRAPGQHPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
LS L+ SLA R+ +++TNQ+ K D
Sbjct: 245 -----LDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKFD- 284
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSG 335
R + +V LG W HA TIRL+ QR + KSP+ F I P G
Sbjct: 285 ------RNQALLVPALGESWGHAATIRLIFHWDQKQRLATLYKSPSQKESTVPFQITPQG 338
Query: 336 I 336
Sbjct: 339 F 339
>gi|432113632|gb|ELK35914.1| DNA repair protein RAD51 like protein 3 [Myotis davidii]
Length = 368
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 132/314 (42%), Gaps = 63/314 (20%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 74 TALDLLEQ----EHTQNFIITFCSALDNILGGGVPLTKTTEICGAPGVGKTQLCMQLAVD 129
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
+P +GG++G ++ID E +F R+I++ + + G + E A P +
Sbjct: 130 VQIPECFGGVEGEAVFIDTEGSFMVDRVIDLATACIQHLQLIAGTSMEEA------HPKA 183
Query: 186 LSEFTESLEKI-----------------KVSLL------QNQVKLLVIDSMEALVPGVHE 222
L FT LE I +V LL ++V+L+++D + +
Sbjct: 184 LENFT--LENILSHIYYFRCHDYTELLAQVYLLSEFLSEHSKVRLVIVDGIAFPFRHDFD 241
Query: 223 QRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR 282
+ L+ + SLA R+ +++TNQ+ K+D +
Sbjct: 242 DLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID-------K 280
Query: 283 YYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDD 342
+ ++ LG W HA TIRL+ QR + KSP+ F I G
Sbjct: 281 NQAMLIPALGESWGHAATIRLIFHWDQKQRLATLYKSPSQKESTVPFQITTQGFR----- 335
Query: 343 GTEMVVPETCNLSS 356
+ VV C+L +
Sbjct: 336 --DAVVATACSLQT 347
>gi|126460684|ref|YP_001056962.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis
JCM 11548]
gi|166218766|sp|A3MXX9.1|RADA_PYRCJ RecName: Full=DNA repair and recombination protein RadA
gi|126250405|gb|ABO09496.1| DNA repair and recombination protein RadA [Pyrobaculum calidifontis
JCM 11548]
Length = 332
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 126/281 (44%), Gaps = 43/281 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +AL + E+R + T ++ LD L GG+ VTE+VG G+GKTQ C +L+
Sbjct: 85 FISALEVYERRKKIRRI----STGVRALDELLGGGIETRAVTEVVGEFGSGKTQLCHQLA 140
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQ 182
++ LP GGL IYID E+TF R++ +I ++G+ + A I +
Sbjct: 141 VMVQLPEDRGGLGAKAIYIDTENTFRPERIM--------QIAKARGLDPDQALNNIFYAR 192
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLI 238
S +E+ K + Q+ V LLV+DS+ A PG E A Q L+ HI+ +
Sbjct: 193 AYSADHQMVLVEQAKSLIRQHNVALLVVDSVIAHFRAEFPG-RENLAERQQKLNKHIADL 251
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
LA+ + +VVTNQV +P + L P G A
Sbjct: 252 LRLADAYDVAVVVTNQVMAQPDVFFGNPLRP----------------------AGGNILA 289
Query: 297 HAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
H T RL L ++K R + SP P SF I G+
Sbjct: 290 HGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 330
>gi|426238577|ref|XP_004013227.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Ovis aries]
Length = 371
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 129/301 (42%), Gaps = 70/301 (23%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQNFIITFCSALDNILGGGIPLTKTTEICGAPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
+P +GG++G ++ID E +F R++++ + I H + +A G P +
Sbjct: 133 VQIPECFGGVEGEAVFIDTEGSFMVDRVVDLATAC---IQHLQLIAGTQMGE---EHPKA 186
Query: 186 LSEFTESLEKI-----------------KVSLLQN------QVKLLVIDSMEALVPGVHE 222
L +FT LE I +V LL + +V+L+++D + P H+
Sbjct: 187 LQDFT--LENILSHIYYFRCRDYTELLAQVYLLSDFLSEHSKVRLVIVDGIA--FPFRHD 242
Query: 223 QRAPGQHPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
LS L+ SLA R+ +++TNQ+ K D
Sbjct: 243 -----LDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKFD- 282
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSG 335
R + +V LG W HA TIR++ QR + KSP+ F I P G
Sbjct: 283 ------RNQALLVPALGESWGHAATIRIIFHWDQKQRLATLYKSPSQKESTVPFQITPQG 336
Query: 336 I 336
Sbjct: 337 F 337
>gi|18376633|emb|CAD21699.1| Rad51C protein [Cricetulus griseus]
Length = 305
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 130/293 (44%), Gaps = 54/293 (18%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 33 TALELLEQ----EHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVD 88
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMG----------ASSFPEIFHSKGMAQEMA 175
+P +GG+ G ++ID E +F R++ + A + + H K +
Sbjct: 89 VQIPECFGGVAGEAVFIDTEGSFMVDRVVTLANACIQHLHLIAGTHKDEEHQKALEGFTL 148
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLLQN--QVKLLVIDSMEALVPGVHEQRAPGQHP 230
IL + ++TE L ++ + L N +V+L++ID + +P H+
Sbjct: 149 ENILSHIYYFRCHDYTELLAQVYLLPDFLSNHSKVQLVIIDGIA--LPFRHDLD-----D 201
Query: 231 LSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRY 283
LS L+ SLA R+ +++TNQ+ K+D +
Sbjct: 202 LSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID-------KN 240
Query: 284 YSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ +V LG W HA TIRL+ + QRF + KSP+ F I P G
Sbjct: 241 QALLVPALGESWGHAATIRLIFHWEQKQRFATLYKSPSQKESTIPFQITPQGF 293
>gi|395845975|ref|XP_003795692.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Otolemur garnettii]
Length = 347
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 122/285 (42%), Gaps = 58/285 (20%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDNILGGGVPLMKTTEICGAPGVGKTQLCIQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR-------I 178
+P +GG+ G I+ID E +F R++++ + I H + +A+ G I
Sbjct: 133 VQIPECFGGVAGEAIFIDTEGSFMIDRVVDIATAC---IQHLQLIAETHIGEGSLGAKPI 189
Query: 179 LVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLI 238
V Q + SL V+L+++D + P H+ LS L+
Sbjct: 190 CVFQCYDFTSSNSSLPD---------VRLVIVDGIA--FPFRHD-----IDDLSLRTRLL 233
Query: 239 T-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
SLA ++ +++TNQ+ K+D + + +V L
Sbjct: 234 NGLAQQMISLANSYKLAVILTNQM--------------TTKID-------KNQAFLVPAL 272
Query: 292 GFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G W HA TIRL+ QR + KSP+ F I P G
Sbjct: 273 GESWGHAATIRLIFHWDQKQRLATLHKSPSQKESTVLFQITPQGF 317
>gi|171186395|ref|YP_001795314.1| DNA repair and recombination protein RadA [Pyrobaculum neutrophilum
V24Sta]
gi|226736610|sp|B1YC14.1|RADA_THENV RecName: Full=DNA repair and recombination protein RadA
gi|170935607|gb|ACB40868.1| DNA repair and recombination protein RadA [Pyrobaculum neutrophilum
V24Sta]
Length = 330
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 127/287 (44%), Gaps = 55/287 (19%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +AL + E+R + T +K LD L GG+ VTE+ G G+GKTQ C +L+
Sbjct: 83 FVSALEVYERRKTIRRI----STGVKALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLA 138
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS-------SFPEIFHSKGMAQEMAG 176
++ LP GGL IYID E+TF R++++ + + IF+++ + +
Sbjct: 139 VMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQ- 197
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLS 232
ILV Q S+ + QN V LLV+DS+ + PG E A Q L+
Sbjct: 198 MILVDQAKSI-------------IKQNNVALLVVDSVIAHFRSEFPG-RENLAERQQKLN 243
Query: 233 WHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
H++ + LA+ + +V+TNQV +P + L P
Sbjct: 244 KHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPLRP----------------------A 281
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G AH T RL L ++K R + SP P SF I G+
Sbjct: 282 GGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 328
>gi|255513422|gb|EET89688.1| DNA repair and recombination protein RadA [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 316
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 130/286 (45%), Gaps = 41/286 (14%)
Query: 58 EIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQ 117
E F+T + E+R A G + T K LD + GG+ +TE+ G +GKTQ
Sbjct: 63 EATTIEFETGTNIAEKRQAL----GKISTNSKDLDELIGGGIEINAITEVYGKFASGKTQ 118
Query: 118 FCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-G 176
+L++ A LP GG+DG V++ID E TF R+ EI +KG+ + A
Sbjct: 119 LAFQLAVNAQLPKDKGGVDGKVLFIDTEGTFRPERI--------EEIAKAKGIDPKTALE 170
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQHPLSW 233
I+V++ TS + ++E+ + + +KL++IDS+ AL R Q L+
Sbjct: 171 NIMVVRATSSEKQMLTIERADSLIREKGIKLIIIDSLTALFRAEFLGRGALGERQQKLNS 230
Query: 234 HISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR--ILKDRTRYYSHIVAVL 291
H+ + LA+ + + VTNQV MD IL + +
Sbjct: 231 HMHKLQQLADKYDVAVYVTNQV-----------------MDNPGIL-----FGDPTTPIG 268
Query: 292 GFHWAHAVTIRL-VLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G AHA T+RL + ++K +R + + SP P + +GI
Sbjct: 269 GNIIAHAATLRLYIRKSKEDKRIIRLVDSPNMPDGECIIRVTSAGI 314
>gi|297700682|ref|XP_002827366.1| PREDICTED: DNA repair protein RAD51 homolog 3 isoform 1 [Pongo
abelii]
Length = 443
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 135/317 (42%), Gaps = 69/317 (21%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 153 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 208
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 209 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTL 268
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLL--QNQVKLLVIDSMEALVPGVHEQRAPGQHP 230
IL + ++TE L ++ + L ++V+L+++D + P +H
Sbjct: 269 DNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIA----------FPFRHD 318
Query: 231 LSWHISLIT-----------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKD 279
L +SL T SLA R+ +++TNQ+ K+D
Sbjct: 319 LD-DLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID----- 358
Query: 280 RTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLL 339
+ + +V LG W HA TIRL+ QR + KSP+ F I P G
Sbjct: 359 --KNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFR-- 414
Query: 340 TDDGTEMVVPETCNLSS 356
+ VV C+L +
Sbjct: 415 -----DTVVTSACSLQT 426
>gi|355568579|gb|EHH24860.1| hypothetical protein EGK_08587 [Macaca mulatta]
Length = 367
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 134/315 (42%), Gaps = 65/315 (20%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQ 228
IL + ++TE L +V LL ++V+L+++D + P H+
Sbjct: 193 DNILSHIYYFRCRDYTELL--AQVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----L 243
Query: 229 HPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
LS L+ SLA R+ +++TNQ+ K+D
Sbjct: 244 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID------- 282
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
+ + +V LG W HA TIRL+ QR + KSP+ F I P G
Sbjct: 283 KNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKESTVLFQIKPQGFR---- 338
Query: 342 DGTEMVVPETCNLSS 356
+ VV C+L +
Sbjct: 339 ---DTVVTSACSLQT 350
>gi|355754048|gb|EHH58013.1| hypothetical protein EGM_07774, partial [Macaca fascicularis]
Length = 374
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 134/315 (42%), Gaps = 65/315 (20%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 84 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 139
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 140 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTL 199
Query: 176 GRILV-LQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQ 228
IL + ++TE L +V LL ++V+L+++D + P H+
Sbjct: 200 DNILSHIYYFRCRDYTELL--AQVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----L 250
Query: 229 HPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
LS L+ SLA R+ +++TNQ+ K+D
Sbjct: 251 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID------- 289
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
+ + +V LG W HA TIRL+ QR + KSP+ F I P G
Sbjct: 290 KNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKESTVLFQIKPQGFR---- 345
Query: 342 DGTEMVVPETCNLSS 356
+ VV C+L +
Sbjct: 346 ---DTVVTSACSLQT 357
>gi|291225163|ref|XP_002732570.1| PREDICTED: X-ray repair complementing defective repair in Chinese
hamster cells 3-like [Saccoglossus kowalevskii]
Length = 383
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 137/309 (44%), Gaps = 24/309 (7%)
Query: 6 ISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCP--P 63
++E+ L I + +T K L L+ +L +L + S+V L VS+ V P P
Sbjct: 3 VNELELHPRILDAIKRAKLTVEK-TLCLSAADLSRLTKLSTSDVGHLLYEVSKSV-PRIP 60
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
AL + E+R ++ T + LD L GG+ +TE+ G + GKTQ C++L
Sbjct: 61 MAIALDIKEERCHASLKVRYVKTGCEVLDDFLRGGILSQGITEIAGESAAGKTQLCMQLC 120
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
L LP H GGL GG +YI E F S+R+ +M ++ M + I V
Sbjct: 121 LTVQLPCHMGGLAGGAVYICTEDVFPSKRLHQMIKYFNRKLGPELEMQLAVGDHIFVEHA 180
Query: 184 TSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHE--QRAPGQHPLSWHISLITS 240
+ + + +++ V L + VK +VIDS+ AL G ++ + A H L +
Sbjct: 181 SDQESLWKCINQRVPVLLARGMVKFIVIDSIAALFRGEYDFSEAAKRAHHLRSFGDQLRK 240
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
L + P+V NQV +S + RY + LG W++ VT
Sbjct: 241 LNQQYNAPVVCVNQVSANMKGDS---------------EYGRY--EFIPALGLSWSNLVT 283
Query: 301 IRLVLEAKS 309
RL+L S
Sbjct: 284 CRLLLSRTS 292
>gi|288931813|ref|YP_003435873.1| DNA repair and recombination protein RadA [Ferroglobus placidus DSM
10642]
gi|288894061|gb|ADC65598.1| DNA repair and recombination protein RadA [Ferroglobus placidus DSM
10642]
Length = 340
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 122/281 (43%), Gaps = 38/281 (13%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T L ++E+R G + T K LD L GGV +TEL G G+GKTQ C +L+
Sbjct: 87 FETGLTILERRKNI----GKITTGSKALDDLLGGGVETQAITELFGEFGSGKTQICHQLA 142
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS--FPEI-FHSKGMAQEMAGRILV 180
+ LP GGL+G V+ ID E TF R+++M + P++ + +AQ +
Sbjct: 143 VNVQLPKEKGGLNGVVVVIDTEGTFRPERIVQMAKAKDLDPDVALENIYVAQAYNSNHQM 202
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISL 237
L + E L K V+LLV+DS+ A + R A Q L+ H+
Sbjct: 203 LLVDNAKELANKLRK-----EGKHVRLLVVDSLTAHFRAEYIGRGTLADRQQKLNRHLHD 257
Query: 238 ITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAVLGFHWA 296
+ E IVVTNQV + K D+ D T+ HIV A
Sbjct: 258 LLRFGELFNAAIVVTNQV--------------MAKPDQFFGDPTKPVGGHIV-------A 296
Query: 297 HAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
H T R+ L G+ R + SP P F I GI
Sbjct: 297 HTATFRVYLRKSKGELRVARLIDSPHLPEAEAVFKITERGI 337
>gi|380796657|gb|AFE70204.1| DNA repair protein RAD51 homolog 3 isoform 1, partial [Macaca
mulatta]
Length = 374
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 134/315 (42%), Gaps = 65/315 (20%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 84 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 139
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 140 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTL 199
Query: 176 GRILV-LQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQ 228
IL + ++TE L +V LL ++V+L+++D + P H+
Sbjct: 200 DNILSHIYYFRCRDYTELL--AQVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----L 250
Query: 229 HPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
LS L+ SLA R+ +++TNQ+ K+D
Sbjct: 251 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID------- 289
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
+ + +V LG W HA TIRL+ QR + KSP+ F I P G
Sbjct: 290 KNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKESTVLFQIKPQGFR---- 345
Query: 342 DGTEMVVPETCNLSS 356
+ VV C+L +
Sbjct: 346 ---DTVVTSACSLQT 357
>gi|213972612|ref|NP_001123249.1| Rad51 homolog c [Rattus norvegicus]
gi|149053773|gb|EDM05590.1| similar to RAD51L2/RAD51C protein (predicted) [Rattus norvegicus]
Length = 366
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 127/296 (42%), Gaps = 60/296 (20%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
+P +GG+ G ++ID E +F R++ + + + G E Q +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEE------QQKA 186
Query: 186 LSEFTESLEKI-----------------KVSLL------QNQVKLLVIDSMEALVPGVH- 221
L +FT LE I +V LL ++V+L++ID + P H
Sbjct: 187 LKDFT--LENILSHIYYFRCHDYTELLAQVYLLPDFLSDHSKVQLVIIDGIA--FPFRHD 242
Query: 222 -EQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDR 280
+ L+ + SLA R+ +++TNQ+ K+D
Sbjct: 243 LDDLFLRTRLLNGLAQQLISLANKHRLAVILTNQM--------------TTKID------ 282
Query: 281 TRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +V LG W HA TIRL+ + QRF + KSP+ F I P G
Sbjct: 283 -KNQASLVPALGESWGHAATIRLIFHWEQKQRFATLYKSPSQKESTVPFQITPQGF 337
>gi|187469096|gb|AAI66862.1| Rad51c protein [Rattus norvegicus]
Length = 345
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 127/296 (42%), Gaps = 60/296 (20%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 56 TALELLEQ----EHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVD 111
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
+P +GG+ G ++ID E +F R++ + + + G E Q +
Sbjct: 112 VQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEE------QQKA 165
Query: 186 LSEFTESLEKI-----------------KVSLL------QNQVKLLVIDSMEALVPGVH- 221
L +FT LE I +V LL ++V+L++ID + P H
Sbjct: 166 LKDFT--LENILSHIYYFRCHDYTELLAQVYLLPDFLSDHSKVQLVIIDGIA--FPFRHD 221
Query: 222 -EQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDR 280
+ L+ + SLA R+ +++TNQ+ K+D
Sbjct: 222 LDDLFLRTRLLNGLAQQLISLANKHRLAVILTNQM--------------TTKID------ 261
Query: 281 TRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +V LG W HA TIRL+ + QRF + KSP+ F I P G
Sbjct: 262 -KNQASLVPALGESWGHAATIRLIFHWEQKQRFATLYKSPSQKESTVPFQITPQGF 316
>gi|327400087|ref|YP_004340926.1| DNA repair and recombination protein radA [Archaeoglobus veneficus
SNP6]
gi|327315595|gb|AEA46211.1| DNA repair and recombination protein radA [Archaeoglobus veneficus
SNP6]
Length = 328
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 122/281 (43%), Gaps = 38/281 (13%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F++ ++E+R G + T K LD L GGV +TEL G G+GKTQ C +L+
Sbjct: 75 FESGDKVLERRRRI----GKITTGSKALDELLGGGVETQSITELFGEFGSGKTQICHQLA 130
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF---PEIFHSKGMAQEMAGRILV 180
+ LP GGL+G VI ID E+TF R+I+M + E+ + +AQ +
Sbjct: 131 VNVQLPRDLGGLEGSVIVIDTENTFRPERIIQMAEAKGLDPEEVLRNIYVAQAYNSNHQM 190
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISL 237
L + E L+K QVKLL++DS+ A + R A Q L+ H+
Sbjct: 191 LLVDNAKELANKLKK-----EGKQVKLLIVDSLMAHFRAEYVGRGTLADRQQKLNKHLHD 245
Query: 238 ITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAVLGFHWA 296
+ E IVVTNQV+ K D D T+ HIV A
Sbjct: 246 LMRFGEIFNAAIVVTNQVQA--------------KPDTFFGDPTKPVGGHIV-------A 284
Query: 297 HAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
H T R+ L G+ R + SP P F + GI
Sbjct: 285 HTATFRIYLRKSKGELRVARLIDSPHLPEGEAVFKVTERGI 325
>gi|440791085|gb|ELR12339.1| Rad51l1 protein [Acanthamoeba castellanii str. Neff]
Length = 248
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 36/229 (15%)
Query: 122 LSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFP---EIFHSKGMAQEMAGRI 178
+++ A LP GGL G V+YID E+ F+ +R++E+ +P E + + Q R+
Sbjct: 1 MAVQACLPVEEGGLGGCVVYIDTEAAFSPKRLVEILTKRYPRYAEAGNVHSLLQPFTQRV 60
Query: 179 LVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV------PGVHEQRAPGQHPLS 232
V + S ++ L+ ++ ++++N VKL+V+DS+ ++ GV ++A L+
Sbjct: 61 TVYRVDSTTDLMSRLDSLEETIIENNVKLIVVDSIASVARKDFDDGGVMRRQA----QLA 116
Query: 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLG 292
S + LAE IP++V+NQV S P+ D++ Y + A LG
Sbjct: 117 AQASTLKRLAENFNIPVLVSNQVTTTSQR-----PYYEFDRPHFGADKSLY---VTAALG 168
Query: 293 FHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
+ WAHAV R+ SP +P ++ + I+ SGI+LL D
Sbjct: 169 YVWAHAVNTRI---------------SPLAPVRSYPYAIDASGINLLGD 202
>gi|348540387|ref|XP_003457669.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Oreochromis
niloticus]
Length = 358
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 123/261 (47%), Gaps = 39/261 (14%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD +L GG+P G +TE+ G G GKTQ CL+L++ +P +GG++G V++ID E +F
Sbjct: 92 LDESLGGGIPVGKITEVCGVPGIGKTQLCLQLAVDVQVPQCFGGVEGQVMFIDTEGSFLL 151
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGR--------------ILVLQPTSLSEFTESLEKI 196
+R+ ++ A++ + H +A++ R I +++ E L +
Sbjct: 152 QRVTDIAAAA---VRHCSLLAEDDEQRAATETFTVETVLSNIFLVRCHDHVELLAELHLL 208
Query: 197 KVSLLQN-QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
L Q+ +++LLVIDS+ + ++ + L+ + ++A I +V+TNQ+
Sbjct: 209 PDFLSQHPKIRLLVIDSVAFPFRLLFDELSQRTRLLNGVGQQLITMAINYNISVVITNQM 268
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMN 315
+ D SHIV LG W HA TIRL+L+ + +R
Sbjct: 269 TTRIRDGQ---------------------SHIVPALGECWGHAPTIRLLLQWEGSRRLAT 307
Query: 316 VEKSPTSPPLAFSFTINPSGI 336
+ KSP + I P G
Sbjct: 308 IFKSPCHMETMVQYQITPEGF 328
>gi|352682863|ref|YP_004893387.1| DNA repair protein [Thermoproteus tenax Kra 1]
gi|350275662|emb|CCC82309.1| DNA repair protein [Thermoproteus tenax Kra 1]
Length = 382
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 127/282 (45%), Gaps = 43/282 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +AL + +R + + T ++ LD L GGV VTE+ G G GKTQFC +L+
Sbjct: 135 FISALEVYRRRVNIKRIS----TGVRSLDELLNGGVETSAVTEVAGEFGAGKTQFCHQLA 190
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
++ LP GGL IYID E+TF R+ +I ++G+ + A + +
Sbjct: 191 VMVQLPEDKGGLSAKAIYIDTENTFRPERI--------AQIARARGLDPDQALKNIYYAR 242
Query: 184 TSLSEFTESL-EKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLI 238
S+ L E+ + + Q+ VKLLV+DS+ A PG E A Q L+ HI+ +
Sbjct: 243 AYSSDHQMILAEQARRIIKQDNVKLLVVDSIVAHFRAEFPG-RENLAERQQKLNKHIADL 301
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+A+ + +VVTNQV +P + L P G A
Sbjct: 302 LKIADAYDVAVVVTNQVMAQPDVFFGNPLKP----------------------AGGNVLA 339
Query: 297 HAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
H T R+ L ++K R + SP P +F I G++
Sbjct: 340 HGATYRIWLRKSKENIRIAKIFDSPYHPEREATFKITEEGLT 381
>gi|62858301|ref|NP_001016923.1| RAD51 homolog C [Xenopus (Silurana) tropicalis]
gi|58477631|gb|AAH89630.1| MGC107796 protein [Xenopus (Silurana) tropicalis]
gi|89269806|emb|CAJ81518.1| RAD51 homolog C (S. cerevisiae) [Xenopus (Silurana) tropicalis]
Length = 361
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 146/340 (42%), Gaps = 53/340 (15%)
Query: 21 ARNITTAKDALSLTELELMKLLDVELSEVRSALALV-----SEIVCPPFQ--TALLLMEQ 73
A T + L + +EL K + E L +V S C Q TA L+ Q
Sbjct: 20 ATGFRTVETILEFSAVELSKEAGISNEEALEVLQIVKGEAQSSSSCQIIQKHTAFDLLGQ 79
Query: 74 RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYG 133
E G + T LD L GG+P +TE+ G G GKTQ C++L++ +P +G
Sbjct: 80 ----EQSQGFVITFCSALDEILGGGIPVAKITEICGVPGVGKTQLCMQLAVDVQIPECFG 135
Query: 134 GLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ--EMAGRILVLQPTSLSEFTE 191
G+ G ++ID E +F R++++ + + H +AQ + I +Q +L+E
Sbjct: 136 GVAGETVFIDTECSFRLERLMDIANAC---VQHCNLIAQGHQDKDHIKAMQTFTLNEILS 192
Query: 192 SLEKI----------KVSLLQN------QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI 235
+ +++LL + +VKL+VIDS+ E + L+
Sbjct: 193 QIYYFSCHDYIELLAQINLLPDFLSSHPKVKLVVIDSIAFPFRHSFEDLSLRTRLLNGFG 252
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHW 295
+ SLA + +V+TNQ+ ++ D S +V LG W
Sbjct: 253 QQLISLAHNCNLAVVLTNQMTT-----------KIGPSD----------SKLVPALGESW 291
Query: 296 AHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSG 335
HA TIRL+L KS QRF+ + KSP+ + I G
Sbjct: 292 GHASTIRLILHWKSKQRFVTLCKSPSQKKATVPYGITSQG 331
>gi|291225492|ref|XP_002732740.1| PREDICTED: RAD51 homolog c-like [Saccoglossus kowalevskii]
Length = 357
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 31/259 (11%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGVP +TE G G GKTQ ++L++ +P+ +GG++G IYID E +F
Sbjct: 85 LDTILGGGVPLAKITEFCGAPGIGKTQIGIQLAVDVQIPSVFGGVEGEAIYIDTEGSFMV 144
Query: 151 RRMIEMGASSFPEIFHS------------KGMAQEMAGRILVLQPTSLSEFTESLEKIKV 198
R +++ ++ S + +I V + E ++ +
Sbjct: 145 HRAVDIAQATVSHCISSIENNPKLKEVLNDFTVNSILSKIYVYRCNDYIELIATVNLLPQ 204
Query: 199 SLLQN-QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257
L ++ +VKL+V+DS+ + A L+ + +A ++ +V+TNQ
Sbjct: 205 FLTEHPRVKLIVLDSIAFHFRNNFDDMALRTRLLNGLAQNLIRMASQHKLAVVLTNQ--- 261
Query: 258 QSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVE 317
M +K R SH+V LG W HA T+R+VL + QR+ +
Sbjct: 262 ---------------MTTKIKSDDRGQSHVVPALGESWGHASTLRIVLFWQHNQRYARLY 306
Query: 318 KSPTSPPLAFSFTINPSGI 336
KSP+ +TI GI
Sbjct: 307 KSPSRKEATVPYTITMGGI 325
>gi|407040527|gb|EKE40177.1| DNA repair protein RAD51 protein [Entamoeba nuttalli P19]
Length = 365
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 132/311 (42%), Gaps = 33/311 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+ + + ++ LA S+IV F A L R T + T + LD LC
Sbjct: 83 QLITIKGISDAKADKLLAESSKIVPLAFTNAAELNNLRKETIRI----TTGSRELDKLLC 138
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG G +TEL G TGKTQ C +L + L GG +G IYID E TF R+
Sbjct: 139 GGFETGSITELFGEFRTGKTQLCHQLCVTCQLGIENGGTEGRAIYIDTEGTFRPERL--- 195
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL-QNQVKLLVIDSMEA 215
+I G+ E A + + +E L ++ L+ + + LL+IDS A
Sbjct: 196 -----TQIAEKYGLNSEEALNNVAVARAHNTEHQMQLLQMASGLMAKERYGLLIIDSATA 250
Query: 216 LVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQK 272
L + R A Q L+ + + +A+ + +V+TNQV Q ++ ++ +K
Sbjct: 251 LYRTDYSGRGELASRQMHLAKFLRALQRIADEFSVAVVLTNQVVAQVDGQASMFGGDTKK 310
Query: 273 MDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTI 331
V G AHA T RL L G+ R V SP P SF I
Sbjct: 311 ----------------PVGGNIIAHASTTRLYLRKGKGEARICKVYDSPCLPESEASFAI 354
Query: 332 NPSGISLLTDD 342
+GI + DD
Sbjct: 355 TTNGIEDVKDD 365
>gi|18312075|ref|NP_558742.1| DNA repair and recombination protein RadA [Pyrobaculum aerophilum
str. IM2]
gi|20139514|sp|Q8ZYR9.1|RADA_PYRAE RecName: Full=DNA repair and recombination protein RadA
gi|18159503|gb|AAL62924.1| DNA repair protein radA [Pyrobaculum aerophilum str. IM2]
gi|18478907|gb|AAL73354.1| DNA repair protein RadA [Pyrobaculum aerophilum]
Length = 333
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 128/287 (44%), Gaps = 55/287 (19%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +AL + E+R + T ++ LD L GG+ VTE+VG G+GKTQ C +L+
Sbjct: 86 FISALEVYERRKKIRRI----STGVRSLDELLGGGIETRAVTEIVGEFGSGKTQLCHQLA 141
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS-------SFPEIFHSKGMAQEMAG 176
++ LP GGL IYID E+TF R++++ + + IF+++ + +
Sbjct: 142 VMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDSDQALHNIFYARAYSSDHQ- 200
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLS 232
ILV Q S+ + Q+ V LLV+DS+ + PG E A Q L+
Sbjct: 201 MILVEQAKSI-------------IKQHNVALLVVDSVIAHFRSEFPG-RENLAERQQKLN 246
Query: 233 WHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
H++ + LA+ + +V+TNQV +P + L P
Sbjct: 247 KHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPLRP----------------------A 284
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G AH T RL L ++K R + SP P SF I G+
Sbjct: 285 GGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 331
>gi|167387582|ref|XP_001738222.1| DNA repair protein rad51 [Entamoeba dispar SAW760]
gi|165898654|gb|EDR25461.1| DNA repair protein rad51, putative [Entamoeba dispar SAW760]
Length = 365
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 132/311 (42%), Gaps = 33/311 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+ + + ++ LA S+IV F A L R T + T + LD LC
Sbjct: 83 QLITIKGISDAKADKLLAESSKIVPLAFTNAAELNNLRKETIRI----TTGSRELDKLLC 138
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG G +TEL G TGKTQ C +L + L GG +G IYID E TF R+
Sbjct: 139 GGFETGSITELFGEFRTGKTQLCHQLCVTCQLGIENGGTEGRAIYIDTEGTFRPERL--- 195
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL-QNQVKLLVIDSMEA 215
+I G+ E A + + +E L ++ L+ + + LL+IDS A
Sbjct: 196 -----TQIAEKYGLNSEEALNNVAVARAHNTEHQMQLLQMASGLMAKERYGLLIIDSATA 250
Query: 216 LVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQK 272
L + R A Q L+ + + +A+ + +V+TNQV Q ++ ++ +K
Sbjct: 251 LYRTDYSGRGELASRQMHLAKFLRALQRIADEFSVAVVLTNQVVAQVDGQASMFGGDTKK 310
Query: 273 MDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTI 331
V G AHA T RL L G+ R V SP P SF I
Sbjct: 311 ----------------PVGGNIIAHASTTRLYLRKGKGEARICKVYDSPCLPESEASFAI 354
Query: 332 NPSGISLLTDD 342
+GI + DD
Sbjct: 355 TTNGIEDVKDD 365
>gi|67477127|ref|XP_654076.1| DNA repair protein RAD51 [Entamoeba histolytica HM-1:IMSS]
gi|56471096|gb|EAL48690.1| DNA repair protein RAD51, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449710730|gb|EMD49753.1| DNA repair protein RAD51, putative [Entamoeba histolytica KU27]
Length = 366
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 132/311 (42%), Gaps = 33/311 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+ + + ++ LA S+IV F A L R T + T + LD LC
Sbjct: 84 QLITIKGISDAKADKLLAESSKIVPLAFTNAAELNNLRKETIRI----TTGSRELDKLLC 139
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG G +TEL G TGKTQ C +L + L GG +G IYID E TF R+
Sbjct: 140 GGFETGSITELFGEFRTGKTQLCHQLCVTCQLGIENGGTEGRAIYIDTEGTFRPERL--- 196
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL-QNQVKLLVIDSMEA 215
+I G+ E A + + +E L ++ L+ + + LL+IDS A
Sbjct: 197 -----TQIAEKYGLNSEEALNNVAVARAHNTEHQMQLLQMASGLMAKERYGLLIIDSATA 251
Query: 216 LVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQK 272
L + R A Q L+ + + +A+ + +V+TNQV Q ++ ++ +K
Sbjct: 252 LYRTDYSGRGELASRQMHLAKFLRALQRIADEFSVAVVLTNQVVAQVDGQASMFGGDTKK 311
Query: 273 MDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTI 331
V G AHA T RL L G+ R V SP P SF I
Sbjct: 312 ----------------PVGGNIIAHASTTRLYLRKGKGEARICKVYDSPCLPESEASFAI 355
Query: 332 NPSGISLLTDD 342
+GI + DD
Sbjct: 356 TTNGIEDVKDD 366
>gi|340379463|ref|XP_003388246.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Amphimedon
queenslandica]
Length = 356
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 44/280 (15%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T G+D L GGVP G +TE G G GKTQ ++L++ A LP +GG G +YI
Sbjct: 57 HIVTFSAGIDGMLGGGVPVGKITEFCGSPGIGKTQLSIQLAIDATLPEPFGGCGGHSVYI 116
Query: 143 DVESTFTSRRMIEMG------------ASSFPEIFH-SKGMAQEMA-GRILV------LQ 182
D E +F R++++ +S+ PE+ + G E+ G I +Q
Sbjct: 117 DTEGSFVIDRVVQIATATVRHVHSVAKSSADPELLAVADGYTLEVVLGNIHYYRCHNHIQ 176
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLA 242
+LS +S + ++V L+V+DS+ + + LS LA
Sbjct: 177 LIALSNILHQ----TISNINSKVCLIVVDSIASPFRSSFKDMGLRHRLLSGLAQTFLKLA 232
Query: 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIR 302
+ +V TNQ+ K ++ S +V LG W H TIR
Sbjct: 233 TQFSLAVVFTNQM--------------------TTKTQSNGQSQLVPALGESWGHVCTIR 272
Query: 303 LVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDD 342
++L + +R ++ KSP+ P S+ I G+ +TDD
Sbjct: 273 VILYWEGKERQAHLYKSPSHPESVVSYQITKDGVRDVTDD 312
>gi|330805267|ref|XP_003290606.1| hypothetical protein DICPUDRAFT_18874 [Dictyostelium purpureum]
gi|325079245|gb|EGC32854.1| hypothetical protein DICPUDRAFT_18874 [Dictyostelium purpureum]
Length = 275
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 33/265 (12%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T K +D L GGVP +TE G G GKTQ +L++ ++P GG++G IYI
Sbjct: 32 HIITFCKEIDQILNGGVPLKKLTEFCGVPGIGKTQMAFQLAINTSIPKSLGGIEGKSIYI 91
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-------GRILVLQPTSLSEFTESLEK 195
D E ++ +R+ EM + + G ++ ++ I + + E + +
Sbjct: 92 DTEGNYSCQRVREMAQHLYDHLEKINGPSEPLSITVDSILNNIYFYRVYNYMEMISLVHQ 151
Query: 196 IKVSLLQNQ-VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQ 254
I + L QN+ V+L+++DS+ A L + S+A + +V NQ
Sbjct: 152 IPLFLEQNKDVRLIILDSITFPFRKDFTDMALRTRLLLSLAQNLMSIATRFNVAVVFMNQ 211
Query: 255 VRPQ---SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ 311
V + + ES L P+ LG WAH T R++L KS Q
Sbjct: 212 VTTKISPNKRESILVPY----------------------LGESWAHICTYRMILFWKSKQ 249
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
RF ++ KSP+ F IN G+
Sbjct: 250 RFCHLYKSPSFKSCYNPFFINEQGV 274
>gi|54400704|ref|NP_001006101.1| DNA repair protein RAD51 homolog 3 [Danio rerio]
gi|53734042|gb|AAH83214.1| Rad51 homolog C (S. cerevisiae) [Danio rerio]
gi|182888768|gb|AAI64186.1| Rad51c protein [Danio rerio]
Length = 362
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 132/288 (45%), Gaps = 47/288 (16%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+ Q E G + T GLD A+ GGVP G TE+ G G GKTQ C++L++
Sbjct: 72 TALDLLHQ----EQTLGSIVTFCSGLDDAIGGGVPVGKTTEICGAPGVGKTQLCMQLAVD 127
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS------FPEIFHSKGMAQEM-AGRI 178
+P +GGL G +YID E +F +R+ +M ++ E KG +E+ +I
Sbjct: 128 VQIPVFFGGLGGKALYIDTEGSFLVQRVADMAEAAVQHCTLLAEDTEQKGALEELNVEKI 187
Query: 179 LV-LQPTSLSEFTESLEKIKVSLLQN------QVKLLVIDSMEALVPGVHEQRAPGQHP- 230
L L ++ + L +V LL + +V+L+VIDS+ P H+ Q
Sbjct: 188 LSNLFLVRCHDYVKLL--AEVYLLPDFLSEHPEVRLVVIDSIA--FPFRHDFEDLSQRTR 243
Query: 231 -LSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHIV 288
L+ + LA R+ +V+TNQ+ + S+ +S L P
Sbjct: 244 LLNGLAQQLIQLATQHRVAVVLTNQMTTRVSNGQSKLVP--------------------- 282
Query: 289 AVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
LG W HA T RL+L + +R ++ KSP+ + I G
Sbjct: 283 -ALGESWGHAATQRLILHWEGQRRLASLYKSPSQMEATVQYQITVQGF 329
>gi|145592504|ref|YP_001154506.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum
DSM 13514]
gi|166218765|sp|A4WN87.1|RADA_PYRAR RecName: Full=DNA repair and recombination protein RadA
gi|145284272|gb|ABP51854.1| DNA repair and recombination protein RadA [Pyrobaculum arsenaticum
DSM 13514]
Length = 333
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 126/281 (44%), Gaps = 43/281 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +AL + E+R + T ++ LD L GG+ VTE+VG G+GKTQ C +L+
Sbjct: 86 FISALEVYERRKKIRRI----STGVRSLDELLGGGIETRAVTEVVGEFGSGKTQLCHQLA 141
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQ 182
++ LP GGL IYID E+TF R+++M ++G+ + A I +
Sbjct: 142 VMVQLPEERGGLGAKAIYIDTENTFRPERIMQMA--------RARGLDPDQALNNIFYAR 193
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLI 238
S +E K + Q+ V L+V+DS+ + PG E A Q L+ H++ +
Sbjct: 194 AYSSDHQMILVEHAKSIVKQHNVALIVVDSVIAHFRSEFPG-RENLAERQQKLNKHVADL 252
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
LA+ + +V+TNQV +P + L P G A
Sbjct: 253 LRLADAYDVAVVITNQVMAQPDVFFGNPLRP----------------------AGGNILA 290
Query: 297 HAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
H T RL L ++K R + + SP P SF I G+
Sbjct: 291 HGATYRLWLRKSKENIRIVKIFDSPYHPEGEVSFRITEEGL 331
>gi|374327612|ref|YP_005085812.1| protein RadA [Pyrobaculum sp. 1860]
gi|356642881|gb|AET33560.1| RadA [Pyrobaculum sp. 1860]
Length = 333
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 128/287 (44%), Gaps = 55/287 (19%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +AL + E+R + T ++ LD L GGV VTE+VG G+GKTQ C +L+
Sbjct: 86 FISALEVYERRKMIRRI----STGVRALDELLGGGVETRAVTEVVGEFGSGKTQLCHQLA 141
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS-------SFPEIFHSKGMAQEMAG 176
++ LP GGL IYID E+TF R++++ + + IF+++ + +
Sbjct: 142 VMVQLPEDRGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALHNIFYARAYSSDHQ- 200
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLS 232
ILV Q S+ + Q+ V LLV+DS+ + PG E A Q L+
Sbjct: 201 MILVDQAKSI-------------IKQHNVALLVVDSVIAHFRSEFPG-RENLAERQQKLN 246
Query: 233 WHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
H++ + LA+ + +V+TNQV +P + L P
Sbjct: 247 KHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPLRP----------------------A 284
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G AH T RL L ++K R + SP P SF I G+
Sbjct: 285 GGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 331
>gi|84490269|ref|YP_448501.1| DNA repair and recombination protein RadA [Methanosphaera
stadtmanae DSM 3091]
gi|121731077|sp|Q2NE95.1|RADA_METST RecName: Full=DNA repair and recombination protein RadA
gi|84373588|gb|ABC57858.1| RadA [Methanosphaera stadtmanae DSM 3091]
Length = 311
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 42/281 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA +ME+R G + T KGLD + GG+ +TE+ G G+GK+Q +LS
Sbjct: 63 FETAFEVMERREDV----GRITTGSKGLDELIGGGIETQSITEVYGEFGSGKSQISHELS 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF----PEIFHSKGMAQEMAGRIL 179
+ LP GGLDG V++ID E+TF R IE A F E+ +A+
Sbjct: 119 VTTQLPVEEGGLDGEVVFIDTENTFRPER-IEQIAEGFGLNIEEVLKKIHVARAFNSSHQ 177
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVH---EQRAPGQHPLSWHIS 236
+L ++E +S +KL++IDS+ A + E A Q L+ H+
Sbjct: 178 ILMADKINELIQS---------GVNIKLIIIDSLMAHFRAEYVGRESLATRQQKLNQHLH 228
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+ ++A + +++TNQV+ K D T+ AV G
Sbjct: 229 TLQTIANTYNVAVLITNQVQS--------------KPDSFFGTPTK------AVGGHVLG 268
Query: 297 HAVTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HA T R++L+ SG+R + SP P F + G+
Sbjct: 269 HASTYRILLKKGLSGKRIARLVDSPHLPEGESVFKVTTEGL 309
>gi|444720807|gb|ELW61576.1| DNA repair protein RAD51 like protein 3 [Tupaia chinensis]
Length = 367
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 129/295 (43%), Gaps = 58/295 (19%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIVTFCSALDNILGGGIPLMKTTEICGVPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMG----------ASSFPEIFHSKGMAQEMA 175
+P +GG+ G I+ID E +F R++++ A + E H K +
Sbjct: 133 VQIPECFGGVAGEAIFIDTEGSFMVDRVVDLATACIQHLHLIAGTHMEEEHQKALEDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKVSLLQN------QVKLLVIDSMEALVPGVHEQRAPGQ 228
IL + ++TE L +V LLQ+ +V+L+++D + P H+
Sbjct: 193 ENILSHIYYFRCHDYTELL--AQVYLLQDFLLEHSKVRLVIVDGIA--FPFRHD-----L 243
Query: 229 HPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
LS L+ SLA R+ +++TNQ+ K+D
Sbjct: 244 DDLSLRTRLLNGLAQQMISLANSHRLAVLLTNQM--------------TTKID------- 282
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +V LG W HA TIRL+ + QR + KSP+ F I G
Sbjct: 283 KNQASLVPALGESWGHAATIRLIFHWERKQRLATLFKSPSQKESTVLFQITSQGF 337
>gi|379005517|ref|YP_005261189.1| DNA repair and recombination protein RadA [Pyrobaculum oguniense
TE7]
gi|375160970|gb|AFA40582.1| DNA repair and recombination protein RadA [Pyrobaculum oguniense
TE7]
Length = 333
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 140/323 (43%), Gaps = 43/323 (13%)
Query: 22 RNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLG 81
+ T KD + EL +++ E ++ A + F +AL + E+R +
Sbjct: 44 KGFYTVKDVAFASVKELAEIIGNEERALQIIEAARKMLGLHSFISALEVYERRKKIRRI- 102
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
T ++ LD L GG+ VTE+VG G+GKTQ C +L+++ LP GGL IY
Sbjct: 103 ---STGVRSLDELLGGGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIY 159
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSL 200
ID E+TF R+++M ++G+ + A I + S +E K +
Sbjct: 160 IDTENTFRPERIMQMA--------RARGLDPDQALNNIFYARAYSSDHQMILVEHAKSIV 211
Query: 201 LQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV- 255
Q+ V L+V+DS+ + PG E A Q L+ H++ + LA+ + +V+TNQV
Sbjct: 212 KQHNVALIVVDSVIAHFRSEFPG-RENLAERQQKLNKHVADLLRLADAYDVAVVITNQVM 270
Query: 256 -RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRF 313
+P + L P G AH T RL L ++K R
Sbjct: 271 AQPDVFFGNPLRP----------------------AGGNILAHGATYRLWLRKSKENIRI 308
Query: 314 MNVEKSPTSPPLAFSFTINPSGI 336
+ SP P SF I G+
Sbjct: 309 AKIFDSPYHPEGEVSFRITEEGL 331
>gi|332848643|ref|XP_511913.3| PREDICTED: DNA repair protein RAD51 homolog 3 [Pan troglodytes]
Length = 337
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 127/295 (43%), Gaps = 58/295 (19%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIEHLQLIAEKHKGEEHQKALEDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQ 228
IL + ++TE L +V LL ++V+L+++D + P H+
Sbjct: 193 DNILSHIYYFRCRDYTELLA--QVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----L 243
Query: 229 HPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
LS L+ SLA R+ +++TNQ+ K+D
Sbjct: 244 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID------- 282
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
R + +V LG W HA TIRL+ QR + KSP+ F I S I
Sbjct: 283 RNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKVSII 337
>gi|334322399|ref|XP_003340234.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Monodelphis
domestica]
Length = 422
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 127/290 (43%), Gaps = 40/290 (13%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD + GG+P TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDNIMGGGIPLTKTTEICGAPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMG----------ASSFPEIFHSKGMA---- 171
+P +GG+ G I++D E +F R+ ++ A S E H K +
Sbjct: 133 VQIPECFGGVAGEAIFLDTEGSFMVDRVADLATACVQHLHLIAGSHLEEEHQKALENFSL 192
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQRAPGQHP 230
+ + I + + +E + + LL++ +V+L+++D + + +
Sbjct: 193 ESILSHIYYFRCHNYTELLAQVHLLPDFLLEHSKVQLIIVDGIAFPFRHDFDDLSLRTRL 252
Query: 231 LSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
L+ + S+A ++ ++ TNQ+ K+D + S +V
Sbjct: 253 LNGLAQQLISMANNHKLAVIWTNQM--------------TTKID-------KNQSMLVPA 291
Query: 291 LGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLT 340
LG W HA TIRL+L QR + KSP+ F I SG L+
Sbjct: 292 LGESWGHAATIRLILHWDQKQRLATLHKSPSQKEATVLFDITQSGCYTLS 341
>gi|119614840|gb|EAW94434.1| RAD51 homolog C (S. cerevisiae), isoform CRA_e [Homo sapiens]
Length = 380
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 134/317 (42%), Gaps = 65/317 (20%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 86 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 141
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 142 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTL 201
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLL--QNQVKLLVIDSMEALVPGVHEQRAPGQHP 230
IL + ++TE L ++ + L ++V+L+++D + P H+
Sbjct: 202 DNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----LDD 254
Query: 231 LSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRY 283
LS L+ SLA R+ +++TNQ+ K+D R
Sbjct: 255 LSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID-------RN 293
Query: 284 YSHIVAVLGFHWAHAVTIRLVLEAKSGQ----RFMNVEKSPTSPPLAFSFTINPSGISLL 339
+ +V LG W HA TIRL+ Q R + KSP+ F I P G
Sbjct: 294 QALLVPALGESWGHAATIRLIFHWDRKQSSLSRLATLYKSPSQKECTVLFQIKPQGFR-- 351
Query: 340 TDDGTEMVVPETCNLSS 356
+ VV C+L +
Sbjct: 352 -----DTVVTSACSLQT 363
>gi|397493033|ref|XP_003817418.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Pan paniscus]
Length = 337
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 127/295 (43%), Gaps = 58/295 (19%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIEHLQLIAEKHKGEEHQKALEDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQ 228
IL + ++TE L +V LL ++V+L+++D + P H+
Sbjct: 193 DNILSHIYYFRCRDYTELLA--QVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----L 243
Query: 229 HPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
LS L+ SLA R+ +++TNQ+ K+D
Sbjct: 244 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID------- 282
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
R + +V LG W HA TIRL+ QR + KSP+ F I S I
Sbjct: 283 RNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKVSII 337
>gi|194382504|dbj|BAG64422.1| unnamed protein product [Homo sapiens]
Length = 337
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 127/293 (43%), Gaps = 54/293 (18%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLL--QNQVKLLVIDSMEALVPGVHEQRAPGQHP 230
IL + ++TE L ++ + L ++V+L+++D + P H+
Sbjct: 193 DNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----LDD 245
Query: 231 LSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRY 283
LS L+ SLA R+ +++TNQ+ K+D R
Sbjct: 246 LSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID-------RN 284
Query: 284 YSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ +V LG W HA TIRL+ QR + KSP+ F I S I
Sbjct: 285 QALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKVSII 337
>gi|159041684|ref|YP_001540936.1| DNA repair and recombination protein RadA [Caldivirga
maquilingensis IC-167]
gi|157920519|gb|ABW01946.1| DNA repair and recombination protein RadA [Caldivirga
maquilingensis IC-167]
Length = 358
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 143/324 (44%), Gaps = 58/324 (17%)
Query: 30 ALSLTELELMKLLDVELSE--VRSALALVSEIV-CPPFQTALLLMEQRAATEHLGGHLPT 86
AL + + +L DV SE R +A +V F TAL + E++ +++ T
Sbjct: 70 ALDVAYAGVKELADVLGSEDRARQIIAAAQRLVGLNNFVTALEVYERKRNVQYIS----T 125
Query: 87 RLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146
+K LD L GG+ +TEL G G+GKT FC +LS++ LP GGL G ++ID E+
Sbjct: 126 GVKALDELLGGGIETRAITELAGEFGSGKTNFCHQLSVMVQLPEDKGGLKGKALFIDTEN 185
Query: 147 TFTSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVS 199
TF R++++ + IF+++ + ++L+ +++ K
Sbjct: 186 TFRPERIVQIAKYRGLDPKEALKNIFYARAYNSDH--QMLI------------IDEAKKI 231
Query: 200 LLQNQVKLLVIDSMEA----LVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
+ + ++L+VIDS+ A PG E A Q L+ HI+ + LA+ +VVTNQV
Sbjct: 232 IPKENIRLIVIDSLVAHFRSEYPG-RENLAERQQKLNHHIAQLLKLADIYNAAVVVTNQV 290
Query: 256 --RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQR 312
+P + L P G AH T R+ L + K R
Sbjct: 291 IAQPDMFFGNPLKP----------------------AGGNVIAHGATYRIWLRKGKENIR 328
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
+ SP P +F I G+
Sbjct: 329 VARILDSPMHPESEATFKITEEGL 352
>gi|119872227|ref|YP_930234.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum
DSM 4184]
gi|143811446|sp|Q9UWR5.2|RADA_PYRIL RecName: Full=DNA repair and recombination protein RadA
gi|119673635|gb|ABL87891.1| DNA repair and recombination protein RadA [Pyrobaculum islandicum
DSM 4184]
Length = 330
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 127/287 (44%), Gaps = 55/287 (19%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +AL + E+R + T ++ LD L GG+ VTE+ G G+GKTQ C +L+
Sbjct: 83 FVSALEVYERRKKIRRI----STGVRALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLA 138
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS-------SFPEIFHSKGMAQEMAG 176
++ LP GGL IYID E+TF R++++ + + IF+++ + +
Sbjct: 139 VMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQ- 197
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLS 232
ILV Q S+ + Q+ V LL++DS+ + PG E A Q L+
Sbjct: 198 MILVDQAKSI-------------IRQHNVALLIVDSVIAHFRSEFPG-RENLAERQQKLN 243
Query: 233 WHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
H++ + LA+ + +V+TNQV +P + L P
Sbjct: 244 KHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPLRP----------------------A 281
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G AH T RL L ++K R + SP P SF I G+
Sbjct: 282 GGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 328
>gi|30578221|gb|AAP35107.1|AF486821_1 Rad51 [Entamoeba histolytica]
Length = 366
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 131/311 (42%), Gaps = 33/311 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+ + + ++ LA S+IV F A L R T + T + LD LC
Sbjct: 84 QLITIKGISDAKADKLLAESSKIVPLAFTNAAELNNLRKETIRI----TTGSRELDKLLC 139
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG G +TEL G TGKTQ C +L + L GG +G IYID E TF R+
Sbjct: 140 GGFETGSITELFGEFRTGKTQLCHQLCVTCQLGIENGGTEGRAIYIDTEGTFRPERL--- 196
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL-QNQVKLLVIDSMEA 215
+I G+ E A + + +E L ++ L+ + + LL+IDS A
Sbjct: 197 -----TQIAEKYGLNSEEALNNVAVARAHNTEHQMPLLQMASGLMAKERYGLLIIDSATA 251
Query: 216 LVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQK 272
L + R A Q L + + +A+ + +V+TNQV Q ++ ++ +K
Sbjct: 252 LYRTDYSGRGELASRQMHLVKFLRALQRIADEFSVAVVLTNQVVAQVDGQASMFGGDTKK 311
Query: 273 MDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTI 331
V G AHA T RL L G+ R V SP P SF I
Sbjct: 312 ----------------PVGGNIIAHASTTRLYLRKGKGEARICKVYDSPCLPESEASFAI 355
Query: 332 NPSGISLLTDD 342
+GI + DD
Sbjct: 356 TTNGIEDVKDD 366
>gi|432960262|ref|XP_004086436.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Oryzias
latipes]
Length = 292
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 39/283 (13%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+++ E G + T LD AL GG+P G VTE+ G G GKT CL+LS+
Sbjct: 21 TALELLQR----ERECGSITTFSSQLDHALKGGLPVGKVTEICGAPGVGKTHLCLQLSVD 76
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF------------PEIFHSKGMAQE 173
+P +GGL+ VI++D E +F +R++++ A+ + + M +
Sbjct: 77 IQIPRSFGGLEAQVIFMDTEGSFVLQRVVDIAAAVVRHFSLLAVDGEQKDTMQTFNM-ES 135
Query: 174 MAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQRAPGQHPLS 232
+ I +++ E L + L +V+LLVIDS+ + + L
Sbjct: 136 ILSNIFLVRCHDYVELQAELLLLPDFLRDKPRVRLLVIDSVAFPFRQHLDDLSQRTRLLQ 195
Query: 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLG 292
+ S+A I +V+TNQ+ + D SH+V LG
Sbjct: 196 GLAQQVISMATRHNIAVVITNQMTTRLQDSQ---------------------SHLVPALG 234
Query: 293 FHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSG 335
W HA T R++L+ + Q+ + KSP A + I G
Sbjct: 235 EIWGHASTTRIILQWEGSQQVAAIVKSPCCIDTAIQYQITSEG 277
>gi|344285345|ref|XP_003414422.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Loxodonta
africana]
Length = 445
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 127/301 (42%), Gaps = 70/301 (23%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 150 TALELLEQ----EHTQGFIITFCSALDNILGGGIPLTKTTEICGAPGVGKTQLCMQLAVD 205
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
+P +GG+ G ++ID E +F R++++ + + G E + +
Sbjct: 206 VQIPECFGGVAGEAVFIDTEGSFMIDRVVDLATACIQHLHLITGTHMEEEHQ------KA 259
Query: 186 LSEFTESLEKI-----------------KVSLL------QNQVKLLVIDSMEALVPGVHE 222
L +FT LE I +V LL ++V+L+++D + P H+
Sbjct: 260 LEDFT--LENILSHIYYFRCRDCTELLAQVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD 315
Query: 223 QRAPGQHPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
LS L+ SLA R+ +++TNQ+ K+D
Sbjct: 316 -----LDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID- 355
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSG 335
+ + ++ LG W HA TIR++ QR + KSP+ F I P G
Sbjct: 356 ------KNQASLIPALGESWGHAATIRIIFHWDQKQRLATLCKSPSQKESTVLFQITPQG 409
Query: 336 I 336
Sbjct: 410 F 410
>gi|305663856|ref|YP_003860144.1| DNA repair and recombination protein RadA [Ignisphaera aggregans
DSM 17230]
gi|304378425|gb|ADM28264.1| DNA repair and recombination protein RadA [Ignisphaera aggregans
DSM 17230]
Length = 316
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 146/341 (42%), Gaps = 43/341 (12%)
Query: 4 KLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP 63
K + E+ + +I ITT + + EL + L + L V+ ++ +
Sbjct: 7 KSLEELGISSTILKKLQEMGITTVEALAAANAQELSQNLAIPLQTVQRLISQARNALGLG 66
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
+TAL + ++R + + T K LD L GG+ +TEL G G+GKTQ C +L+
Sbjct: 67 LKTALEIKKERMSLPKI----TTGSKNLDTLLGGGIEVKTITELFGEFGSGKTQICHQLA 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
+ LP GGL IYID E TF R+ M + GM E IL ++
Sbjct: 123 VNVQLPPEKGGLSKRAIYIDTEGTFRWERIEAMA--------RAIGMNPDEAMENILYVR 174
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLI 238
+ E++K + + + L+V+DS+ A PG E A Q L+ H+ +
Sbjct: 175 AVNSDHQMAIAEELKEIIPKENIGLVVVDSITGHFRAEYPG-RENLAVRQQKLNRHLHQL 233
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
S+AE + +VVTNQV RP D D T VA+ G
Sbjct: 234 MSIAELFDVAVVVTNQVMARP----------------DVFYGDPT------VAIGGHVLY 271
Query: 297 HAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
HA IR+ L+ G +R V +P P F I +GI
Sbjct: 272 HAPGIRVQLKKSRGNRRIARVVDAPHLPESEAVFAITEAGI 312
>gi|146302794|ref|YP_001190110.1| DNA repair and recombination protein RadA [Metallosphaera sedula
DSM 5348]
gi|226736609|sp|A4YCN4.1|RADA_METS5 RecName: Full=DNA repair and recombination protein RadA
gi|145701044|gb|ABP94186.1| DNA repair and recombination protein RadA [Metallosphaera sedula
DSM 5348]
Length = 324
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 136/298 (45%), Gaps = 47/298 (15%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++RA+ + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEIEQERASVKKI----TTGSQALDGLLGGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
EL G G+GKTQ C ++S+ LP GGL G +YID E TF + R+ M ++ E
Sbjct: 111 ELFGEFGSGKTQICHQVSVNVQLPPERGGLSGKALYIDTEGTFRTERIKAMASALGLE-- 168
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIK-VSLLQNQVKLLVIDSMEALVPGVHEQR 224
+E+ I+ ++ + +E+++ + N +KL+V+DS+ + + R
Sbjct: 169 -----PKEVLQNIMSIRAINTDHQIAIVEELQDIIAKDNSIKLVVVDSITSHFRAEYSGR 223
Query: 225 ---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKD 279
A Q L+ H+ + LAE + ++VTNQV RP D D
Sbjct: 224 ENLAVRQQKLNRHLHQLVRLAEIYDLAVIVTNQVMARP----------------DMFYGD 267
Query: 280 RTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
T VAV G H IR+ ++ G +R + +P P F+I +GI
Sbjct: 268 PT------VAVGGHTLYHVPGIRVQIKKSRGNRRIARMVDAPHLPEGEVVFSITNTGI 319
>gi|255070105|ref|XP_002507134.1| Rad51 DNA recombinase 3 [Micromonas sp. RCC299]
gi|226522409|gb|ACO68392.1| Rad51 DNA recombinase 3 [Micromonas sp. RCC299]
Length = 362
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 34/263 (12%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD L GGV G +TEL G G GKTQ C++L + +P +GG +G +YID E +F
Sbjct: 106 KDLDDLLGGGVAVGEITELCGCPGIGKTQACMQLCVSVQMPGAFGGYEGSAVYIDTEGSF 165
Query: 149 TSRRMIEMGASSFPEIF-----------HSKGMAQ----EMAGRILVLQPTSLSEFTESL 193
+ R E+ ++ + S ++Q E+ R+ + + ++E +
Sbjct: 166 MAERAKEVAQATVSHLVSISQFLPKHLSESGALSQFTVNEILDRVHLFRCHEITELLAVV 225
Query: 194 EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTN 253
E + + + + VKL+VIDSM + A L+ + + +LA+ + +V N
Sbjct: 226 ESLPMYVRAHGVKLVVIDSMAFHFRQDFKDMALRTAILAKMTTQLLNLAKSEHLAVVSVN 285
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRF 313
Q+ + D + +V LG +AH T R++L +S +R
Sbjct: 286 QI-------------------TVKPDPASGVARLVPALGESYAHGCTTRVILSWESDRRM 326
Query: 314 MNVEKSPTSPPLAFSFTINPSGI 336
+ KSP P FT+ GI
Sbjct: 327 AYLFKSPRLPRGKAKFTVTNGGI 349
>gi|330833876|ref|YP_004408604.1| DNA repair and recombination protein RadA [Metallosphaera cuprina
Ar-4]
gi|329566015|gb|AEB94120.1| DNA repair and recombination protein RadA [Metallosphaera cuprina
Ar-4]
Length = 324
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 139/299 (46%), Gaps = 49/299 (16%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++RA+ + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEIEQERASVKKI----TTGSQALDGLLGGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
EL G G+GKTQ C ++S+ LP+ GGL G +YID E TF + R+ M AS+
Sbjct: 111 ELFGEFGSGKTQICHQVSVNVQLPSEKGGLSGKALYIDTEGTFRTERIKAM-ASAL---- 165
Query: 166 HSKGMA-QEMAGRILVLQPTSLSEFTESLEKIK-VSLLQNQVKLLVIDSMEALVPGVHEQ 223
G+ +E+ I+ ++ + +E+++ + N +KL+V+DS+ + +
Sbjct: 166 ---GLDPKEVLQNIMSIRAINTDHQIAIVEELQDIISKDNTIKLVVVDSITSHFRAEYSG 222
Query: 224 R---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILK 278
R A Q L+ H+ + LAE + ++VTNQV RP D
Sbjct: 223 RENLAVRQQKLNRHLHQLVRLAEIYDLAVIVTNQVMARP----------------DMFYG 266
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ ++ G +R + +P P F+I +GI
Sbjct: 267 DPT------VAVGGHTLYHVPGIRVQIKKSRGNRRIARMVDAPHLPEGEVVFSITNTGI 319
>gi|332246456|ref|XP_003272370.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Nomascus leucogenys]
Length = 337
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 127/295 (43%), Gaps = 58/295 (19%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAEKHKGEEHRKALEDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQ 228
IL + ++TE L +V LL ++V+L+++D + P H+
Sbjct: 193 DNILSHIYYFRCRDYTELLA--QVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----L 243
Query: 229 HPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
LS L+ SLA R+ +++TNQ+ K+D
Sbjct: 244 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID------- 282
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +V LG W HA TIRL+ QR + KSP+ F I S I
Sbjct: 283 KNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKESTVLFQIKVSII 337
>gi|410980625|ref|XP_003996677.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Felis catus]
Length = 337
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 130/296 (43%), Gaps = 60/296 (20%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQSFIITFCSALDNILGGGIPLTKTTEICGVPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
+P +GG++G ++ID E +F R++++ + I H +A+ G P +
Sbjct: 133 VQIPECFGGVEGEAVFIDTEGSFMVDRVVDLATAC---IQHLHLIAEAHMGE---EHPKA 186
Query: 186 LSEFTESLEKI-----------------KVSLL------QNQVKLLVIDSMEALVPGVH- 221
L +FT LE I +V LL ++V+L+++D + P H
Sbjct: 187 LEDFT--LENILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD 242
Query: 222 -EQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDR 280
+ + L+ + SLA R+ +++TNQ+ K+D
Sbjct: 243 LDDLSLRSRLLNGLAQQMISLANNHRLAVLLTNQM--------------TTKID------ 282
Query: 281 TRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
R + +V LG W HA TIRL+ QR + KSP+ F I S I
Sbjct: 283 -RNQALLVPALGESWGHAATIRLIFHWDQNQRLATLCKSPSQKESTVLFQITVSII 337
>gi|395748906|ref|XP_003778851.1| PREDICTED: DNA repair protein RAD51 homolog 3 isoform 2 [Pongo
abelii]
Length = 337
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 127/295 (43%), Gaps = 58/295 (19%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQ 228
IL + ++TE L +V LL ++V+L+++D + P H+
Sbjct: 193 DNILSHIYYFRCRDYTELLA--QVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----L 243
Query: 229 HPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
LS L+ SLA R+ +++TNQ+ K+D
Sbjct: 244 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID------- 282
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +V LG W HA TIRL+ QR + KSP+ F I S I
Sbjct: 283 KNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKVSII 337
>gi|345805658|ref|XP_537695.3| PREDICTED: DNA repair protein RAD51 homolog 3 isoform 1 [Canis
lupus familiaris]
Length = 337
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 129/297 (43%), Gaps = 62/297 (20%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQSFIITFCSALDNILGGGIPLTKTTEICGVPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG++G ++ID E +F R++++ + + HSK +
Sbjct: 133 VQIPECFGGVEGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAGRHMGEEHSKALEDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLL--QNQVKLLVIDSMEALVPGVHEQRAPGQHP 230
IL + ++TE L ++ + L ++V+L+++D + P +H
Sbjct: 193 ENILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIA----------FPFRHD 242
Query: 231 LSWHISLIT-----------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKD 279
L +SL T SLA R+ +++TNQ+ K+D
Sbjct: 243 LD-DLSLRTRLLNGLAQQMISLANNHRLAVLLTNQM--------------TTKID----- 282
Query: 280 RTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
R + +V LG W HA TIRL+ QR + KSP+ F I S I
Sbjct: 283 --RNQALLVPALGESWGHAATIRLIFHWDQKQRLATLYKSPSQKESTVLFQITVSII 337
>gi|338710970|ref|XP_001500693.3| PREDICTED: DNA repair protein RAD51 homolog 3 [Equus caballus]
Length = 337
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 129/293 (44%), Gaps = 54/293 (18%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQNFIITFCSALDNILGGGVPLTKTTEICGAPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG++G ++ID E +F R++++ + + +SK +
Sbjct: 133 VQIPECFGGVEGEAVFIDTEGSFMVDRVVDIANACIQHLQLIAGTHLGEEYSKALEDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLL--QNQVKLLVIDSMEALVPGVHEQRAPGQHP 230
IL + ++TE L ++ + L ++V+L+++D + P H+
Sbjct: 193 ENILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----LDD 245
Query: 231 LSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRY 283
LS L+ SLA R+ +++TNQ+ K+D R
Sbjct: 246 LSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID-------RN 284
Query: 284 YSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ +V LG W HA TIRL+ QR + KSP+ A F I S I
Sbjct: 285 QALLVPALGESWGHAATIRLIFHWDQKQRLATLYKSPSQKESAVLFQITVSII 337
>gi|347523524|ref|YP_004781094.1| DNA repair and recombination protein RadA [Pyrolobus fumarii 1A]
gi|343460406|gb|AEM38842.1| DNA repair and recombination protein RadA [Pyrolobus fumarii 1A]
Length = 322
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 137/312 (43%), Gaps = 51/312 (16%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL ++ LS + + E + F+TAL L ++R A + + T + LDA L
Sbjct: 46 ELAAAANIPLSTAQRIVRAAREALNLTFKTALELKKERLAAKKI----TTGSRNLDALLG 101
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ ++TE G G+GKTQ C +L++ LP GGL +YID E TF R+ M
Sbjct: 102 GGIETRMITEFFGEYGSGKTQICHQLAVNVQLPPEQGGLGARAVYIDTEGTFRWERIENM 161
Query: 157 GA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
I++ + + + Q + E + + K QN +KL++
Sbjct: 162 AKRWGLDPDKVMENIYYVRAINSDH-------QMAIVEELFDLVPK------QN-IKLVI 207
Query: 210 IDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS+ A PG E+ A Q L+ H+ + LAE I IV+TNQV
Sbjct: 208 VDSITSHFRAEYPG-RERLAERQQKLNRHLHQLMRLAELYDIAIVITNQV---------- 256
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPP 324
+ + D + D T+ AV G HA IR+ L +A+ +R + +P P
Sbjct: 257 ----MARPDVVWGDPTQ------AVGGHVLYHAPGIRVQLRKARGNKRIARIVDAPHLPE 306
Query: 325 LAFSFTINPSGI 336
F I GI
Sbjct: 307 NETVFVITDQGI 318
>gi|291405699|ref|XP_002719136.1| PREDICTED: RAD51 homolog C [Oryctolagus cuniculus]
Length = 473
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 146/354 (41%), Gaps = 85/354 (24%)
Query: 26 TAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQ-------------TALLLME 72
TA++ L + EL K + + E L ++ CP + TAL L+E
Sbjct: 25 TAEELLEVKPSELSKEVGISKEEALETLQIIRR-ECPTNKPRYAGTSESGKKCTALELLE 83
Query: 73 QRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHY 132
Q EH + T +D L GG+P TE+ G G GKTQ C++L++ +P +
Sbjct: 84 Q----EHTQSFIITFCSAVDNILGGGIPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECF 139
Query: 133 GGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES 192
GG+ G ++ID E +F R++E+ + + +AG + + +L EFT
Sbjct: 140 GGVAGEAVFIDTEGSFMVDRVVELATACIQHL-------HLIAGTHMEEEQKALEEFT-- 190
Query: 193 LEKI-----------------KVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQH 229
LE I +V LL ++V+L+++D + P H+
Sbjct: 191 LENILSHIYYFRCCDYTELLAQVYLLPDFLSEHSKVRLVIVDGI--AFPFRHD-----LD 243
Query: 230 PLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR 282
LS L+ SLA R+ +++TNQ+ +I KD+
Sbjct: 244 DLSLRTRLLNGLAQQMISLANNHRLAVILTNQM-----------------TTKIEKDQ-- 284
Query: 283 YYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ +V LG W HA TIRLV QR + KSP+ F I G
Sbjct: 285 --ALLVPALGESWGHAATIRLVFHWDQNQRLATLYKSPSQKESTVLFEITSQGF 336
>gi|403274804|ref|XP_003929151.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Saimiri boliviensis
boliviensis]
Length = 337
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 54/293 (18%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGSIITFCSALDNILGGGVPLMKTTEICGAPGIGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAEKHKGEEHRKALEDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLL--QNQVKLLVIDSMEALVPGVHEQRAPGQHP 230
IL + ++TE L ++ + + L ++V+L+++D + P H+
Sbjct: 193 ENILSHIYYFRCRDYTELLAQVYLLPTFLSEHSKVRLVIVDGIA--FPFRHD-----LDD 245
Query: 231 LSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRY 283
LS L+ SLA R+ +++TNQ+ + + L
Sbjct: 246 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKINKNQAL------------------ 287
Query: 284 YSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
++ LG W HA TIRL+ QR + KSP+ F I S I
Sbjct: 288 ---LIPALGESWGHAATIRLIFHWDQKQRLATLYKSPSQKESTVLFQITVSII 337
>gi|302348270|ref|YP_003815908.1| DNA repair and recombination protein radA [Acidilobus
saccharovorans 345-15]
gi|302328682|gb|ADL18877.1| DNA repair and recombination protein radA [Acidilobus
saccharovorans 345-15]
Length = 326
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 127/283 (44%), Gaps = 47/283 (16%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TAL L ++R + + T K LD L GG+ +TE G GTGKTQ C +LS
Sbjct: 75 FKTALELKKERMSVRKI----TTGSKALDDLLGGGIETKQITEFFGEFGTGKTQICHQLS 130
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA---QEMAGRILV 180
+ LP GGL+G +YID E TF R+ +M ++G+ ++ I
Sbjct: 131 VNVQLPEDKGGLNGKAVYIDTEGTFRWERIEQM----------ARGLGLDPDKVMDNIYW 180
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHIS 236
++ + ++++ L ++ ++L+V+DS+ A PG E A Q L+ H+
Sbjct: 181 IRAINSHHQMAIVDQLFDMLDKDNIRLVVVDSLTSHFRAEFPG-RENLAARQQLLNRHLH 239
Query: 237 LITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
+ LAE + +VVTNQV RP Y AV G
Sbjct: 240 QLMRLAEVYDVAVVVTNQVMARPDVF----------------------YGDPTAAVGGNV 277
Query: 295 WAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
AHA IR+ L ++++ +R + +P P F I G+
Sbjct: 278 VAHAPGIRVQLKKSRNNKRIARIVDAPHLPEGETVFAITEYGV 320
>gi|126465874|ref|YP_001040983.1| DNA repair and recombination protein RadA [Staphylothermus marinus
F1]
gi|126014697|gb|ABN70075.1| DNA repair and recombination protein RadA [Staphylothermus marinus
F1]
Length = 319
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 142/331 (42%), Gaps = 43/331 (12%)
Query: 14 SIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQ 73
SIA+ A TT + EL + + + L +A +++ F+TA + +
Sbjct: 19 SIADKLEAAGFTTPWAIVVSRAEELAEKVGIPLHTAERIIANARKLLGIRFKTAKEVKLE 78
Query: 74 RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYG 133
R + + T K LD L GG+ +TE G GTGKTQ C +LS+ LP G
Sbjct: 79 RLSVRKI----TTGSKNLDDLLGGGIETKTITEFFGEYGTGKTQICHQLSVNVQLPPERG 134
Query: 134 GLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA---QEMAGRILVLQPTSLSEFT 190
GL G +YID E TF R+ M ++G+ E+ I + +
Sbjct: 135 GLSGRAVYIDTEGTFRWERIEAM----------ARGLGLDPDEVMENIYYQRAYNSDHQI 184
Query: 191 ESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSR 246
+E++ + ++ VKL+VIDS+ A PG E A Q L+ H+ + LAE
Sbjct: 185 AIVEELFSFVPEHNVKLVVIDSVTSHFRAEYPG-RENLAARQQKLNKHLHQLVRLAEAYN 243
Query: 247 IPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL- 305
I +VVTNQV + + D D T+ AV G AH +R+ L
Sbjct: 244 IAVVVTNQV--------------MARPDVFYGDPTQ------AVGGHVLAHTPGVRVQLR 283
Query: 306 EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+AK +R V +P P F I GI
Sbjct: 284 KAKGHKRIARVVDAPHLPEGEAIFVIVDEGI 314
>gi|225446054|ref|XP_002268968.1| PREDICTED: DNA repair protein XRCC3 homolog [Vitis vinifera]
Length = 300
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 108/226 (47%), Gaps = 18/226 (7%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGVP +TELV +G+GKTQ CL+L L A LP GGL +YI E F S
Sbjct: 25 LDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGGLAASSLYIHSEFPFPS 84
Query: 151 RRMIEMGA---SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL----QN 203
RR+ ++ SS+ + S+ + +LV S + + L K+ LL Q
Sbjct: 85 RRLQQLSQSFRSSYSHVLDSEYNPLDF---VLVRGVQSADQLFDVLLKMDSVLLRPPTQL 141
Query: 204 QVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHIS-LITSLAEFSRIPIVVTNQVRPQS 259
V+L+VIDS+ AL G E + L + IS + +LAE + +VVTNQV
Sbjct: 142 PVRLIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAERFGLAVVVTNQVVDFV 201
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL 305
L +V + + R + A LG WA+ V RL L
Sbjct: 202 GQAGGLNGLRVGNLGSLWSSGRR----VCAALGLSWANCVNSRLFL 243
>gi|297272693|ref|XP_001104781.2| PREDICTED: DNA repair protein RAD51 homolog 3-like [Macaca mulatta]
Length = 337
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 127/295 (43%), Gaps = 58/295 (19%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQ 228
IL + ++TE L +V LL ++V+L+++D + P H+
Sbjct: 193 DNILSHIYYFRCRDYTELLA--QVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----L 243
Query: 229 HPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
LS L+ SLA R+ +++TNQ+ K+D
Sbjct: 244 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID------- 282
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +V LG W HA TIRL+ QR + KSP+ F I S I
Sbjct: 283 KNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKESTVLFQIKVSVI 337
>gi|315231638|ref|YP_004072074.1| DNA repair and recombination RadA-like protein [Thermococcus
barophilus MP]
gi|315184666|gb|ADT84851.1| DNA repair and recombination RadA-like protein [Thermococcus
barophilus MP]
Length = 355
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 120/265 (45%), Gaps = 38/265 (14%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T K LD L GG+ +TE+ G G+GKTQ L+++ LP GGL+G VI+
Sbjct: 117 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQIAHTLAVMVQLPPEEGGLNGSVIW 176
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSE---FTESLEKIK 197
ID E+TF R+ +I ++G+ E+ I V + + + E E+I
Sbjct: 177 IDTENTFRPERI--------RQIAENRGLDPDEVLKNIYVARAYNTNHQMLLVEKAEEII 228
Query: 198 VSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
L VKL+V+DS+ + + R A Q L H++ + LA I I VT
Sbjct: 229 KEKLNTDRPVKLMVVDSLTSHFRSEYVGRGALAERQQKLGKHLADLHRLANLYDIAIFVT 288
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQ 311
NQV+ + D D TR + G AH+ T+R+ L + K+G+
Sbjct: 289 NQVQARP--------------DAFFGDPTR------PIGGHILAHSATLRIYLRKGKAGK 328
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
R + SP P +F I GI
Sbjct: 329 RIARLIDSPHLPEGEAAFRITDKGI 353
>gi|355715062|gb|AES05213.1| RAD51-like protein C [Mustela putorius furo]
Length = 322
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 117/273 (42%), Gaps = 58/273 (21%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQSFIITFCSALDNILGGGIPLTKTTEICGVPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ-EMAGRILVLQPT 184
+P +GG++G ++ID E +F R++++ + I H A+ M G P
Sbjct: 133 VQIPECFGGVEGEAVFIDTEGSFMVDRVVDLATAC---IQHLHLTAETHMGGE----HPK 185
Query: 185 SLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS-LAE 243
+L +FT +E ++ ++ R L + L+ L+E
Sbjct: 186 ALEDFT----------------------LENILSHIYYFRCRDYTELLAQVYLLPDFLSE 223
Query: 244 FSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL 303
S+ +++TNQ+ K+D R + +V LG W HA TIRL
Sbjct: 224 HSK--VLLTNQM--------------TTKID-------RNQALLVPALGESWGHAATIRL 260
Query: 304 VLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ QR + KSP+ F I P G
Sbjct: 261 IFHWDQKQRLATLYKSPSQKESTVLFQITPQGF 293
>gi|326426794|gb|EGD72364.1| hypothetical protein PTSG_00384 [Salpingoeca sp. ATCC 50818]
Length = 364
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/355 (26%), Positives = 142/355 (40%), Gaps = 50/355 (14%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M+ K +S RL + A T D +T EL K L++ E L + +
Sbjct: 1 MSRKPVSACRLTAGQTHKLARCGYETVGDLEYVTVAELSKELEIGEEEAAQILRQIKDDS 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
+++ + R E L T + D L GG+ +TE G G GKTQ +
Sbjct: 61 SSGVESSTVFSGLR--REEQLHSLSTLTRDFDELLGGGIEPRKLTEFCGAPGAGKTQLAM 118
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+LS+ LP +GGL G V+YID E +F + R E+ H++ Q A R
Sbjct: 119 QLSVNCQLPHAFGGLAGQVVYIDTEGSFMADRFKEIAE-------HTRSELQPRASRRRK 171
Query: 181 LQPTSLSEFTESLEKIKVSLLQN-------------------QVKLLVIDSMEALVPGVH 221
Q +L E LE + V + N QVKL+VIDS+
Sbjct: 172 KQ-AALPSVEEMLEGVHVFRVHNYIEQIAVLNALPAFQIDHPQVKLVVIDSIAFHFRADF 230
Query: 222 EQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
L+ + SLA I +++TNQ M +KD T
Sbjct: 231 HDMGLRTRLLNGAAQQLLSLATQHNIVVLITNQ------------------MTTTIKDGT 272
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ ++ LG WAHA T R+VL R ++ KSP+ P + +++ G+
Sbjct: 273 ---ATLIPALGETWAHACTTRVVLAFDGDTRSASLFKSPSLPEGSIHYSVTAGGV 324
>gi|145353002|ref|XP_001420821.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581056|gb|ABO99114.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 358
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 125/291 (42%), Gaps = 48/291 (16%)
Query: 67 ALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126
A LL E+RA T + LD AL GG G +TEL G G GKTQ ++LS+ A
Sbjct: 84 AELLREERARWSVF-----TFCEALDDALGGGAASGEITELCGCPGIGKTQMAMQLSVSA 138
Query: 127 ALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS------SFPEIFHSKGMAQEMAGRILV 180
P +GGL G +Y+D E +FT+ R ++M + + + +EM +
Sbjct: 139 QTPRAFGGLGGEAVYVDTEGSFTAERAMDMAEALAEHLGRCAKRCEDEDARREMEAALET 198
Query: 181 LQPTSL------------SEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQRAPG 227
P ++ +E +LE + + + +V+L+VIDS+ + A
Sbjct: 199 CAPEAMLRGIHLFRCHEVTELLAALETLGEFIAERPKVRLVVIDSVAFHFRQDFQDMALR 258
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQ--VRPQSHDESCLYPFQVQKMDRILKDRTRYYS 285
LS + + S+A ++ +V NQ V+PQ + L P
Sbjct: 259 TTILSKMTNRLMSIATTQQVAVVTVNQVTVKPQRDGSARLVP------------------ 300
Query: 286 HIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
LG +AHA T R++L ++ +R V KSP P + + GI
Sbjct: 301 ----ALGESYAHACTTRVILSWENDERVAFVTKSPRLPQARARYAVTAGGI 347
>gi|224142257|ref|XP_002324475.1| predicted protein [Populus trichocarpa]
gi|222865909|gb|EEF03040.1| predicted protein [Populus trichocarpa]
Length = 290
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 129/277 (46%), Gaps = 41/277 (14%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD + GG+P +TE+V +G+GKTQ CL+LSL A LP GGL +Y+ E F +
Sbjct: 19 LDCCMGGGIPCNSITEIVAESGSGKTQLCLQLSLRAQLPPFLGGLSASSLYLYTEFPFPT 78
Query: 151 RRMIEMGAS---SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--- 204
RR+ ++ ++ +P+IF S + I + + + + + +++ S L+N
Sbjct: 79 RRLHQLSSALQCQYPQIFVSN---YDPCDSIFLQSVNTADQLLDIMPQVE-SFLENSKTR 134
Query: 205 --VKLLVIDSMEALVPGVHEQRAPG---QHPLSWHISLITSLAEFSR---IPIVVTNQVR 256
V+++VIDSM AL E A + L + IS L EF++ + ++VTNQV
Sbjct: 135 LPVRVIVIDSMAALFRAEFENTASDLIRRSSLFFKIS--GKLKEFAKRFNLVVLVTNQVM 192
Query: 257 PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL---EAKSG--- 310
L ++ + + R + LG WA+ V RL L E +SG
Sbjct: 193 DVVDSGEGLNEVRIGNLSGMYSSGRR----VCPALGLSWANCVNSRLFLSKDEYESGLVG 248
Query: 311 -----------QRFMNVEKSPTSPPLAFSFTINPSGI 336
+R ++V +P P L+ F I G+
Sbjct: 249 GGESGFLSRETRRRLHVVFAPHLPDLSCEFVIRREGV 285
>gi|393795027|ref|ZP_10378391.1| DNA repair and recombination protein RadA [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 396
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 116/263 (44%), Gaps = 30/263 (11%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T LD GGV +TE+ G G+GKTQF LS++ P GGLDGGV+Y
Sbjct: 86 GKITTGTNCLDTLFDGGVETQALTEVYGEFGSGKTQFAHTLSVMVQKPKTEGGLDGGVLY 145
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
ID E+TF R++ + + + +++ RI+V + + + T LE+ +
Sbjct: 146 IDTENTFRPERIVSIAQAHEMD-------PEKVLDRIIVARAYNSAHQTLILEEAGPVIE 198
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+N +KL+V+DS L + R + Q L+ + +++ +AE + TNQV
Sbjct: 199 ENNIKLIVVDSAVGLFRAEYLGRGTLSNRQQKLNHFVHMLSRIAETYNCAAIATNQV--- 255
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEK 318
+ D D TR + G AH T R+ + +R +
Sbjct: 256 -----------MASPDVFFGDPTR------PIGGNVVAHTSTYRIYFKKSGKKRIARMVD 298
Query: 319 SPTSPPLAFSFTINPSGISLLTD 341
SP P F + +G+ L D
Sbjct: 299 SPHHPEEEVLFALGEAGVMDLED 321
>gi|402899803|ref|XP_003912876.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Papio anubis]
Length = 337
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 127/295 (43%), Gaps = 58/295 (19%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVGRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQ 228
IL + ++TE L +V LL ++V+L+++D + P H+
Sbjct: 193 DNILSHIYYFRCRDYTELLA--QVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----L 243
Query: 229 HPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
LS L+ SLA R+ +++TNQ+ K+D
Sbjct: 244 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID------- 282
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +V LG W HA TIRL+ QR + KSP+ F I S I
Sbjct: 283 KNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKESTVLFQIKVSVI 337
>gi|57529909|ref|NP_001006489.1| DNA repair protein XRCC3 [Gallus gallus]
gi|53127776|emb|CAG31217.1| hypothetical protein RCJMB04_3f19 [Gallus gallus]
Length = 347
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 149/357 (41%), Gaps = 55/357 (15%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV---CPPFQTAL 68
PK IA + A +I + K+ L+L+ +L +L+ + ++V L VS + C TAL
Sbjct: 10 PKVIAALKKA-DIKSIKEVLNLSGADLQRLMKLSSADVECLLKTVSRALRKNC--MLTAL 66
Query: 69 LLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
L + + L LD L GG+P +TEL G + GKTQ L+L L
Sbjct: 67 QLYQDKDCFSSQCQKLSLGCSVLDDLLKGGIPLVGITELAGESSAGKTQIGLQLCLCVQY 126
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF-------PEIFHSKGMAQEMAGRILVL 181
P YGGL+ G +YI E F S+R+ ++ A PEI I V
Sbjct: 127 PYRYGGLESGAVYICTEDAFPSKRLQQLIAQQHKLRADVPPEIIQKI----RFGNSIFVE 182
Query: 182 QPTSLSEFTESLEKIKVSLL--QNQVKLLVIDSMEALVP---GVHEQRAPGQHPLSWHIS 236
L F + K ++SLL + V+L+VIDS+ AL G + ++ ++
Sbjct: 183 HAADLDTFHNCITK-RLSLLLTRGMVRLVVIDSIAALFRCEFGASDSVLKARYLQTFGAQ 241
Query: 237 LITSLAEFSRIPIVVTNQVR---PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGF 293
L L+ R PI+ NQV +S C Y + S + LG
Sbjct: 242 L-HGLSTRFRTPIMCINQVTDAVSESEAAQCSY--------------STADSRVSPALGI 286
Query: 294 HWAHAVTIRLVLEA--------------KSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
WA+ + +RL++ + R + V +P PP FT+ G+
Sbjct: 287 TWANQLLMRLMVSRVPQPEPSPGAVSHHPASMRTLRVVFAPHLPPSFCCFTVKLEGV 343
>gi|147777505|emb|CAN60498.1| hypothetical protein VITISV_027869 [Vitis vinifera]
Length = 2077
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 103/223 (46%), Gaps = 12/223 (5%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGVP +TELV +G+GKTQ CL+L L A LP GGL +YI E F S
Sbjct: 1802 LDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGGLAASSLYIHSEFPFPS 1861
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL----QNQVK 206
RR+ ++ S H +LV S + + L K+ LL Q V+
Sbjct: 1862 RRLQQLSQSFRSSYSHVLDSEYNPLDFVLVRGVQSADQLFDVLLKMDSVLLRPPTQLPVR 1921
Query: 207 LLVIDSMEALVPGVHEQRA---PGQHPLSWHIS-LITSLAEFSRIPIVVTNQVRPQSHDE 262
L+VIDS+ AL G E + L + IS + +LAE + +VVTNQV
Sbjct: 1922 LIVIDSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAERFGLAVVVTNQVVDFVGQA 1981
Query: 263 SCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL 305
L +V + + R + A LG WA+ V RL L
Sbjct: 1982 GGLNGLRVGNLGSLWSSGRR----VCAALGLSWANCVNSRLFL 2020
>gi|6683006|dbj|BAA88984.1| RadA [Pyrobaculum islandicum]
Length = 315
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 126/287 (43%), Gaps = 55/287 (19%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +AL + E+R + T ++ LD L GG+ VTE+ G G+GKTQ C +L+
Sbjct: 68 FVSALEVYERRKKIRRI----STGVRALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLA 123
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS-------SFPEIFHSKGMAQEMAG 176
++ L GGL IYID E+TF R++++ + + IF+++ + +
Sbjct: 124 VMVQLAEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQ- 182
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLS 232
ILV Q S+ + Q+ V LL++DS+ + PG E A Q L+
Sbjct: 183 MILVDQAKSI-------------IRQHNVALLIVDSVIAHFRSEFPG-RENLAERQQKLN 228
Query: 233 WHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
H++ + LA+ + +V+TNQV +P + L P
Sbjct: 229 KHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPLRP----------------------A 266
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G AH T RL L ++K R + SP P SF I G+
Sbjct: 267 GGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 313
>gi|390343398|ref|XP_003725868.1| PREDICTED: DNA repair protein RAD51 homolog 3-like isoform 1
[Strongylocentrotus purpuratus]
Length = 415
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 118/262 (45%), Gaps = 45/262 (17%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGVP +TE+ G G GKTQ C++L + +PA GG++G +YID E +F
Sbjct: 130 LDEMLGGGVPMCKITEICGAPGVGKTQTCIQLCVDVQIPASLGGVEGEAVYIDTEGSFIP 189
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMA--------GRILVLQPTSLSEFTESLEKIKVSLLQ 202
+R + A + E H+ G E+ I + + E + + L +
Sbjct: 190 QRAWGI-AQAATEHCHTMGDQAELKDFTTEKILSGIHYFRCHNHVELLALVNLLPEFLSK 248
Query: 203 N-QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAE-FSRI------PIVVTNQ 254
N +VKL+++DS+ + +S L+ LA+ F RI +V+TNQ
Sbjct: 249 NPKVKLIIVDSIAFHFRHDFDD-------MSLRTRLLNGLAQNFIRIATQYNLAVVLTNQ 301
Query: 255 VRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFM 314
M + + T SH++ LG W HA TIRL+L K QR+
Sbjct: 302 ------------------MTTKIGEGT---SHLIPALGESWGHACTIRLILYWKQAQRYA 340
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
N+ KSP+ + I +G+
Sbjct: 341 NLYKSPSKQEATVPYQITQAGV 362
>gi|147920562|ref|YP_685641.1| DNA repair and recombination protein RadA [Methanocella arvoryzae
MRE50]
gi|110621037|emb|CAJ36315.1| DNA repair/recombination protein A [Methanocella arvoryzae MRE50]
Length = 323
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 121/287 (42%), Gaps = 46/287 (16%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T + E+R A G L T LD L GGV +TE G G+GKTQ +L+
Sbjct: 67 FETGDTVFERRKAV----GKLKTNCNSLDDLLGGGVETQSITEFYGEFGSGKTQVAHQLA 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM------GASSFPEIFHSK---GMAQEM 174
+ LP GGL G V+ ID E+TF R+ +M G PE F A
Sbjct: 123 VNVQLPPEQGGLGGSVVMIDTENTFRPERIAQMVKGLKGGEDLDPEDFLKNIHVARAYNS 182
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPL 231
+IL+++ S E EK++ S VKL+++DS+ A + R A Q L
Sbjct: 183 NHQILLVESAS-----ELAEKMRDS--DRPVKLIIVDSLTAHFRSEYVGRGTLADRQQKL 235
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAV 290
+ H+ + + + IVVTNQV+ K D D TR HIV
Sbjct: 236 NKHMHDLMRFGDINNAAIVVTNQVQA--------------KPDAFFGDPTRPIGGHIV-- 279
Query: 291 LGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
H T RL L G+ R + SP P F++ G+
Sbjct: 280 -----GHTATFRLYLRKSKGEKRIARLVDSPNLPEGEAIFSVTTEGL 321
>gi|148223319|ref|NP_001080559.1| DNA repair protein RAD51 homolog B [Xenopus laevis]
gi|2500106|sp|Q91917.1|RA51B_XENLA RecName: Full=DNA repair protein RAD51 homolog B; Short=xRAD51.2
gi|1054622|dbj|BAA07500.1| XRad51.2 [Xenopus laevis]
gi|28302165|gb|AAH46650.1| Rad51 protein [Xenopus laevis]
gi|80477159|gb|AAI08487.1| Rad51 protein [Xenopus laevis]
Length = 336
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 135/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ +G T K LD L
Sbjct: 56 ELLNIKGISEAKAEKILAEAAKLVPMGFTTATEFHQRRSEIIQIG----TGSKELDKLLQ 111
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 112 GGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 169
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + + +++ LL++DS AL
Sbjct: 170 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIVDSATAL 224
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 225 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 282
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 283 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 327
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 328 ADGVGDAKD 336
>gi|212224798|ref|YP_002308034.1| DNA repair and recombination protein RadA [Thermococcus onnurineus
NA1]
gi|212009755|gb|ACJ17137.1| radA DNA repair protein rad51 [Thermococcus onnurineus NA1]
Length = 353
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 128/284 (45%), Gaps = 44/284 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F A ME+R G + T K LD + GG+ +TE+ G G+GKTQ L+
Sbjct: 101 FMRADEYMEKRRTI----GKISTGSKSLDKLVGGGIETQAITEVFGEFGSGKTQLAHTLA 156
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
++ LP GGL G VI+ID E+TF R+ +I ++G+ +E+ I V +
Sbjct: 157 VMVQLPPEEGGLQGSVIWIDTENTFRPERI--------RQIAENRGLDPEEVLKNIYVAR 208
Query: 183 PTS------LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSW 233
+ L E E + K K + VKL+VIDS+ A + R A Q L+
Sbjct: 209 AFNSNHQMLLVERAEEIIKEKAE-TERPVKLIVIDSLMAHFRSEYVGRGTLAERQQKLAK 267
Query: 234 HISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGF 293
H++ + +A+ I + VTNQV+ K D D TR V G
Sbjct: 268 HLADLHRIADLYDIAVFVTNQVQA--------------KPDAFFGDPTR------PVGGH 307
Query: 294 HWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
AH+ T+R+ L + K+G+R + SP P F I G+
Sbjct: 308 ILAHSATLRIYLRKGKAGKRVARLIDSPHLPEGEAIFRITDKGV 351
>gi|119719931|ref|YP_920426.1| Rad51-like [Thermofilum pendens Hrk 5]
gi|119525051|gb|ABL78423.1| Rad51-like protein [Thermofilum pendens Hrk 5]
Length = 315
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T +K LD L GG+ + E G G+GKTQ C +LS+ A LP GGL G V+Y+D
Sbjct: 85 LTTGVKALDELLEGGLVTQEIYEFAGEYGSGKTQLCHQLSVTAQLPPSRGGLGGKVVYVD 144
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF+ R IE A F G+ + G + V +P S+ E E + K LL+
Sbjct: 145 TEGTFSPSR-IERIAERF-------GVEGALEG-VYVARPISVDELEELVIKGLKPLLKG 195
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
VKL+VIDS+ AL R A Q +++ + + LA I +V+TNQV
Sbjct: 196 GVKLVVIDSVIALYRAQFRGREWLAMRQQRINYALDWLKRLARVYSIVVVITNQV 250
>gi|389860554|ref|YP_006362793.1| DNA repair and recombination protein RadA [Thermogladius
cellulolyticus 1633]
gi|388525457|gb|AFK50655.1| DNA repair and recombination protein RadA [Thermogladius
cellulolyticus 1633]
Length = 322
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 125/279 (44%), Gaps = 39/279 (13%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA + +R + + + T + LD L GGV +TE G GTGKTQ C +LS
Sbjct: 72 FKTAKDVKYERLSIKKI----TTGSRELDNILGGGVETKTITEFFGEYGTGKTQICHQLS 127
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGL G +Y+D E TF R+ M + G+ + A + Q
Sbjct: 128 VNVQLPPEKGGLSGKAVYVDTEGTFRWERIEAMA--------RAVGLEPDKAMENIFYQR 179
Query: 184 TSLSEFTESL-EKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLI 238
S+ S+ E++ + +N V+L+V+DS+ A PG E A Q L+ H+ +
Sbjct: 180 AYNSDHQISIVEELFSFVPKNNVRLVVLDSVTSHFRAEYPG-REHLAERQQKLNAHLHQL 238
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
LAE + +VVTNQV + + D D T VAV G AH
Sbjct: 239 MRLAEAYNLAVVVTNQV--------------MARPDVFYGDPT------VAVGGHVLAHT 278
Query: 299 VTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R+ L ++K +R + +P P F I GI
Sbjct: 279 PGVRVQLRKSKGNKRIARIVDAPHLPEGEAVFVITEEGI 317
>gi|149635547|ref|XP_001509367.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Ornithorhynchus
anatinus]
Length = 364
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 128/290 (44%), Gaps = 40/290 (13%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDNILGGGIPLTKTTEICGGPGVGKTQLCIQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRM----------IEMGASSFPEIFHSKGMAQEMA 175
+P +GG+ G ++ID E +F R+ +++ A S E K +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFLVDRVEAIATACIQHLQLVAESHLEEEQQKALENFSL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLL--QNQVKLLVIDSMEALVPGVHEQRAPGQHP 230
IL + ++TE L +I + L ++V+L+V+D + + +
Sbjct: 193 ESILAHIYYFRCHDYTELLAQIYLLSDFLSEHSKVRLVVVDGIAFPFRHDFDDLSLRTRL 252
Query: 231 LSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
L+ + SLA ++ +++TNQ+ K+D + S +V
Sbjct: 253 LNGLAQQLISLANDHKLAVILTNQM--------------TTKID-------QNQSILVPA 291
Query: 291 LGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLT 340
LG W HA TIR++L QR + KSP+ S+ I G +T
Sbjct: 292 LGDSWGHAATIRIILHWDRKQRLATLCKSPSQKESTVSYQITCQGFRDVT 341
>gi|374633151|ref|ZP_09705518.1| DNA repair and recombination protein RadA [Metallosphaera
yellowstonensis MK1]
gi|373524635|gb|EHP69512.1| DNA repair and recombination protein RadA [Metallosphaera
yellowstonensis MK1]
Length = 324
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 138/299 (46%), Gaps = 49/299 (16%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++RA+ + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEIEQERASVKKI----TTSSQALDGLLGGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
EL G G+GKTQ C ++S+ LP GGL G +YID E TF + R+ M AS+
Sbjct: 111 ELFGEFGSGKTQICHQISVNVQLPPEKGGLAGKALYIDTEGTFRTERIRAM-ASAL---- 165
Query: 166 HSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQ-NQVKLLVIDSMEALVPGVHEQ 223
G+ +E I+ ++ + +E+++ + + +++KL+V+DS+ + +
Sbjct: 166 ---GLDPKEALSNIMSIRAINTDHQIAIVEELQDLIAKDDRIKLVVVDSVTSHFRAEYSG 222
Query: 224 R---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILK 278
R A Q L+ H+ + LAE + +VVTNQV RP D
Sbjct: 223 RENLAARQQKLNRHLHQLVRLAEIYDLAVVVTNQVMARP----------------DMFYG 266
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ ++ G +R + +P P F+I GI
Sbjct: 267 DPT------VAVGGHTLYHVPGIRVQIKKSRGNRRIARMVDAPHLPEGEVVFSITNVGI 319
>gi|115610811|ref|XP_788683.2| PREDICTED: DNA repair protein RAD51 homolog 1-like
[Strongylocentrotus purpuratus]
Length = 335
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 135/319 (42%), Gaps = 46/319 (14%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T+ EL + + ++ L ++V F TA +QR+ + T K LD
Sbjct: 52 TKKELCAVKGISEAKADKILTEAQKLVPMGFTTATQFHQQRSEIIQV----TTGSKELDK 107
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+ G +TE+ G TGKTQ C +++ LP GG +G +YID E TF R+
Sbjct: 108 LLQGGIETGSITEIFGEFRTGKTQLCHTMAVTCQLPIDNGGGEGKCLYIDTEGTFRPERL 167
Query: 154 IEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVK 206
I + G+ + +++ + ++L LQ +++ + +++
Sbjct: 168 IAVADRYNLSGSDVLDNVAYARAHNSDHQSQLL-LQASAM-------------MAESRYA 213
Query: 207 LLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDES 263
LL++DS AL + R A Q L + + LA+ + +V+TNQV Q D +
Sbjct: 214 LLIVDSATALYRTDYSGRGELASRQMHLGRFLRTLLRLADEYGVAVVITNQVVAQV-DGA 272
Query: 264 CLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTS 322
++ +K + G AHA T RL L G+ R + SP
Sbjct: 273 AMFTSDPKK----------------PIGGHIMAHASTTRLYLRKGRGETRICKIYDSPCL 316
Query: 323 PPLAFSFTINPSGISLLTD 341
P F INP G+ D
Sbjct: 317 PEAEAMFAINPDGVGDAKD 335
>gi|47213607|emb|CAG07273.1| unnamed protein product [Tetraodon nigroviridis]
Length = 329
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 39/261 (14%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LDAAL GG P G +TE+ G G GKTQ CL+L++ +P +GGL V+Y+D E F
Sbjct: 90 LDAALGGGAPVGRMTEVCGVPGVGKTQLCLQLAVDVQVPHCFGGLGAQVVYVDTEGGFRL 149
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPT-----------SLSEFTESLEKIKV- 198
+R++++ A++ + H +A++ R+ + T ++ E L ++ +
Sbjct: 150 QRLLDLAAAA---VNHCSLLAEDQEQRVAMETFTVETILSNVFVVRCHDYLELLAELHLM 206
Query: 199 -SLLQNQ--VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
L V+LLV+DS+ + + ++ + LS + ++A + +VVTNQ+
Sbjct: 207 PGFLSAHPGVRLLVVDSVASPFRPLLDELSQRTRLLSGLAQQLVAMAASRDMAVVVTNQM 266
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMN 315
R+ +S +V LG W HA IRL L+ + +R
Sbjct: 267 -----------------TTRVWGT----HSEVVPALGDTWGHAAAIRLRLQWEGPRRLAT 305
Query: 316 VEKSPTSPPLAFSFTINPSGI 336
+ KSP A + I G
Sbjct: 306 IVKSPCHRVSAVGYQITSEGF 326
>gi|240102188|ref|YP_002958496.1| DNA repair and recombination protein RadA [Thermococcus
gammatolerans EJ3]
gi|239909741|gb|ACS32632.1| DNA repair and recombination protein RadA (radA) [Thermococcus
gammatolerans EJ3]
Length = 355
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 126/284 (44%), Gaps = 44/284 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F A ME+R G + T K LD L GG+ +TE+ G G+GKTQ L+
Sbjct: 103 FMRADEYMEKRRTI----GKISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 158
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
++ P GGL G VI+ID E+TF R+ +I ++G+ E+ I V +
Sbjct: 159 VMVQKPPEEGGLGGSVIWIDTENTFRPERI--------RQIAEARGLDPDEVLKNIYVAR 210
Query: 183 PTS------LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSW 233
+ L E E + K K S VKLLV+DS+ A + R A Q L+
Sbjct: 211 AFNSNHQMLLVEKAEEIIKEKAS-TDRPVKLLVVDSLMAHFRSEYVGRGSLAERQQKLAK 269
Query: 234 HISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGF 293
H++ + LA+ I + VTNQV+ K D D TR V G
Sbjct: 270 HLADLHRLADLYDIAVFVTNQVQA--------------KPDAFFGDPTR------PVGGH 309
Query: 294 HWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
AH+ T+R+ L + K+G+R + SP P F I G+
Sbjct: 310 ILAHSATLRVYLRKGKAGKRVARLIDSPHLPEGEAVFRITEKGV 353
>gi|4996226|dbj|BAA78377.1| Rad51 [Cynops pyrrhogaster]
Length = 337
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 135/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 57 ELLNIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQV----TTGSKELDKLLQ 112
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 113 GGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 170
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + + +++ LL++DS AL
Sbjct: 171 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIVDSATAL 225
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 226 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 283
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 284 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 328
Query: 333 PSGISLLTD 341
P G+ D
Sbjct: 329 PDGVGDAKD 337
>gi|18978298|ref|NP_579655.1| DNA repair and recombination protein RadA [Pyrococcus furiosus DSM
3638]
gi|397652424|ref|YP_006493005.1| DNA repair and recombination protein RadA [Pyrococcus furiosus
COM1]
gi|13878669|sp|O74036.1|RADA_PYRFU RecName: Full=DNA repair and recombination protein RadA
gi|3560537|gb|AAC34998.1| recombinase [Pyrococcus furiosus DSM 3638]
gi|18894122|gb|AAL82050.1| recombinase, radA [Pyrococcus furiosus DSM 3638]
gi|393190015|gb|AFN04713.1| DNA repair and recombination protein RadA [Pyrococcus furiosus
COM1]
Length = 349
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 124/265 (46%), Gaps = 38/265 (14%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T K LD L GG+ +TE+ G G+GKTQ L+++ LP GGL+G VI+
Sbjct: 111 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW 170
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSE----FTESLEKI 196
ID E+TF R+ EI ++G+ E+ I V + + + ++ +KI
Sbjct: 171 IDTENTFRPERI--------REIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKI 222
Query: 197 KVSLLQNQ-VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
K L ++ VKLL++DS+ + + R A Q L+ H++ + LA I + VT
Sbjct: 223 KELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT 282
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQ 311
NQV+ + D D TR + G AH+ T+R+ L + K G+
Sbjct: 283 NQVQARP--------------DAFFGDPTR------PIGGHILAHSATLRVYLRKGKGGK 322
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
R + +P P F+I GI
Sbjct: 323 RIARLIDAPHLPEGEAVFSITEKGI 347
>gi|332374336|gb|AEE62309.1| unknown [Dendroctonus ponderosae]
Length = 338
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 126/285 (44%), Gaps = 32/285 (11%)
Query: 56 VSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGK 115
VS++V F TA ++RA + T K LD L GG+ G +TEL G TGK
Sbjct: 77 VSKLVPMGFTTATEFHQKRADMICV----STGSKELDRLLGGGIETGSITELFGEFRTGK 132
Query: 116 TQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA 175
TQ C L++ LP GG +G +YID E TF R++ + E F K Q +
Sbjct: 133 TQICHTLAVTCQLPTDCGGAEGKCLYIDTEGTFRPERLL-----AVAERF--KMEPQTVL 185
Query: 176 GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLS 232
+ + + T+ L + +++ LLV+DS AL + R A Q LS
Sbjct: 186 DNVAYARAYNTDHQTQLLLHASAMMAESRYALLVVDSAMALYRSEYSGRGELAARQMHLS 245
Query: 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLG 292
+ ++ LA+ + +V+TNQV Q D + ++ +K + G
Sbjct: 246 RFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFNADPKK----------------PIGG 288
Query: 293 FHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
AH+ T RL L + ++ R + SP P F INP G+
Sbjct: 289 HIMAHSSTTRLYLRKGRNETRMCKIYDSPCLPEAEAMFAINPDGV 333
>gi|449272326|gb|EMC82304.1| DNA repair protein RAD51 like protein 1, partial [Columba livia]
Length = 338
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 134/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 58 ELLNIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 113
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 114 GGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 173
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + ++L ++E ++ LL+
Sbjct: 174 AERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMAE--------------SRYALLI 219
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R A Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 220 VDSATALYRTDYSGRGELAARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 278
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 279 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 322
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 323 EAMFAINADGVGDAKD 338
>gi|15897194|ref|NP_341799.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
P2]
gi|284174439|ref|ZP_06388408.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
98/2]
gi|384433707|ref|YP_005643065.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
98/2]
gi|14286170|sp|Q55075.2|RADA_SULSO RecName: Full=DNA repair and recombination protein RadA
gi|126030236|pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
gi|160286393|pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
gi|160286394|pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
gi|160286395|pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
gi|226438154|pdb|2ZUB|A Chain A, Left Handed Rada
gi|226438155|pdb|2ZUB|B Chain B, Left Handed Rada
gi|226438156|pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
gi|226438157|pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
gi|226438158|pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
gi|226438159|pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
gi|13813387|gb|AAK40589.1| DNA repair protein radA (radA) [Sulfolobus solfataricus P2]
gi|261601861|gb|ACX91464.1| DNA repair and recombination protein RadA [Sulfolobus solfataricus
98/2]
Length = 324
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 49/299 (16%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEVKKERMNVKKIS----TGSQALDGLLAGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C +LS+ LP GGL G +YID E TF R+ M + +I
Sbjct: 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI- 169
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPGV 220
+ I ++ + ++ ++ + ++ +KL+V+DS+ A PG
Sbjct: 170 ------DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG- 222
Query: 221 HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILK 278
E A Q L+ H+ +T LAE I +++TNQV RP D
Sbjct: 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP----------------DMFYG 266
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ L+ G +R V +P P F + GI
Sbjct: 267 DPT------VAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319
>gi|390961215|ref|YP_006425049.1| DNA recombination and repair protein, RecA-like protein
[Thermococcus sp. CL1]
gi|390519523|gb|AFL95255.1| DNA recombination and repair protein, RecA-like protein
[Thermococcus sp. CL1]
Length = 354
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 125/284 (44%), Gaps = 44/284 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F A ME+R G + T K LD L GG+ +TE+ G G+GKTQ L+
Sbjct: 102 FMRADEYMEKRKTI----GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 157
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
++ LP GGL G VI+ID E+TF R+ +I ++G+ E I V +
Sbjct: 158 VMVQLPPEEGGLGGSVIWIDTENTFRPERI--------RQIAENRGLDPDETLKNIYVAR 209
Query: 183 PTS------LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSW 233
+ L E E + K K VKLLV+DS+ A + R A Q L+
Sbjct: 210 AFNSNHQMLLVERAEEIIKEKAE-TDRPVKLLVVDSLMAHFRSEYVGRGTLAERQQKLAK 268
Query: 234 HISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGF 293
H++ + +A+ I + VTNQV+ K D D TR V G
Sbjct: 269 HLADLHRIADLYDIAVFVTNQVQA--------------KPDAFFGDPTR------PVGGH 308
Query: 294 HWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
AH+ T+R+ L + K+G+R + SP P F I G+
Sbjct: 309 ILAHSATLRIYLRKGKAGKRVARLIDSPHLPEGEAIFRITDRGV 352
>gi|383319080|ref|YP_005379921.1| DNA repair and recombination protein RadA [Methanocella conradii
HZ254]
gi|379320450|gb|AFC99402.1| DNA repair and recombination protein RadA [Methanocella conradii
HZ254]
Length = 324
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 122/287 (42%), Gaps = 46/287 (16%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T + E+R A G L T LD L GGV +TE G G+GKTQ +L+
Sbjct: 68 FETGDAVFERRKAV----GKLKTGSSALDELLGGGVETQSITEFYGEFGSGKTQVAHQLA 123
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM------GASSFPEIFHSK---GMAQEM 174
+ LP GGL+G VI ID E+TF R+ +M G PE F A
Sbjct: 124 VNVQLPPEEGGLNGSVIMIDTENTFRPERIAQMVKGLKNGDDYDPEDFLKNIHVARAYNS 183
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPL 231
+IL+++ S E EK+K S V+L+++DS+ A + R A Q L
Sbjct: 184 NHQILLVESAS-----ELAEKLKDS--DKPVRLIIVDSLTAHFRSEYVGRGTLADRQQKL 236
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAV 290
+ H+ + + + I+VTNQV+ K D D TR HIV
Sbjct: 237 NKHMHDLMRFGDINNAAIIVTNQVQA--------------KPDAFFGDPTRPIGGHIV-- 280
Query: 291 LGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
H T R+ L G+ R + SP P F++ G+
Sbjct: 281 -----GHTATFRVYLRKSKGEKRIARLVDSPNLPEGEAIFSVTTEGL 322
>gi|227828152|ref|YP_002829932.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
M.14.25]
gi|227830859|ref|YP_002832639.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
L.S.2.15]
gi|229579745|ref|YP_002838144.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
Y.G.57.14]
gi|229581586|ref|YP_002839985.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
Y.N.15.51]
gi|229585381|ref|YP_002843883.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
M.16.27]
gi|238620342|ref|YP_002915168.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
M.16.4]
gi|284998366|ref|YP_003420134.1| DNA repair or recombination protein RadA [Sulfolobus islandicus
L.D.8.5]
gi|385773822|ref|YP_005646389.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
HVE10/4]
gi|385776457|ref|YP_005649025.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
REY15A]
gi|259551812|sp|C3MZK6.1|RADA_SULIA RecName: Full=DNA repair and recombination protein RadA
gi|259551815|sp|C4KIT6.1|RADA_SULIK RecName: Full=DNA repair and recombination protein RadA
gi|259551818|sp|C3MRI1.1|RADA_SULIL RecName: Full=DNA repair and recombination protein RadA
gi|259551822|sp|C3MY77.1|RADA_SULIM RecName: Full=DNA repair and recombination protein RadA
gi|259551825|sp|C3NFU5.1|RADA_SULIN RecName: Full=DNA repair and recombination protein RadA
gi|259551829|sp|C3N7M8.1|RADA_SULIY RecName: Full=DNA repair and recombination protein RadA
gi|227457307|gb|ACP35994.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
L.S.2.15]
gi|227459948|gb|ACP38634.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
M.14.25]
gi|228010460|gb|ACP46222.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
Y.G.57.14]
gi|228012302|gb|ACP48063.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
Y.N.15.51]
gi|228020431|gb|ACP55838.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
M.16.27]
gi|238381412|gb|ACR42500.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
M.16.4]
gi|284446262|gb|ADB87764.1| DNA repair or recombination protein RadA [Sulfolobus islandicus
L.D.8.5]
gi|323475205|gb|ADX85811.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
REY15A]
gi|323477937|gb|ADX83175.1| DNA repair and recombination protein RadA [Sulfolobus islandicus
HVE10/4]
Length = 324
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 49/299 (16%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEVKKERMNVKKIS----TGSQALDGLLAGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C +LS+ LP GGL G +YID E TF R+ M + +I
Sbjct: 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI- 169
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPGV 220
+ I ++ + ++ ++ + ++ +KL+V+DS+ A PG
Sbjct: 170 ------DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG- 222
Query: 221 HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILK 278
E A Q L+ H+ +T LAE I +++TNQV RP D
Sbjct: 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP----------------DMFYG 266
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ L+ G +R V +P P F + GI
Sbjct: 267 DPT------VAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319
>gi|224051777|ref|XP_002200331.1| PREDICTED: DNA repair protein XRCC3 [Taeniopygia guttata]
Length = 347
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 151/356 (42%), Gaps = 53/356 (14%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVC-PPFQTALLL 70
PK+IA + A +I + K+ L+L+ +L +L+ + ++++ L VS + TAL L
Sbjct: 10 PKTIAALKKA-DIKSVKEILNLSGADLQRLMKLPSADIQCLLKTVSHTLRRNSMLTALQL 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+ + L LD L GG+P +TEL G + GKTQ L+L L P
Sbjct: 69 YQDKDNFPSQHQKLSLGCSVLDNLLKGGIPLVGITELAGESSAGKTQIGLQLCLCVQYPY 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIE-------MGASSFPEIFHSKGMAQEMAGRILVLQP 183
YGGL+ G +YI E F S+R+ + + A EI I V Q
Sbjct: 129 KYGGLESGAVYICTEDVFPSKRLQQLIDQQHKLRADVPAEIIQKI----RFGNSIFVEQA 184
Query: 184 TSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-----SL 237
L F + + ++ + L + V+L+VIDSM AL + P + L +
Sbjct: 185 ADLDTFQQCITRRLSLLLARGMVRLVVIDSMAAL---FRSEFGPAEAALKARYLQTFGAQ 241
Query: 238 ITSLAEFSRIPIVVTNQVR---PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
+ SL+ R PIV NQV +S C + R + R + LG
Sbjct: 242 LHSLSTRFRTPIVCINQVTDAVSESEAAQCSW--------RAVGSR------VTPALGIT 287
Query: 295 WAHAVTIRLVLEAKS--------------GQRFMNVEKSPTSPPLAFSFTINPSGI 336
W++ + +RL++ S R ++V +P PP +T+ G+
Sbjct: 288 WSNQLLMRLMVRRVSLPGHSPGAASHCAGSTRTLSVVFAPHLPPSFCYYTVQLEGV 343
>gi|332158421|ref|YP_004423700.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2]
gi|331033884|gb|AEC51696.1| DNA repair and recombination protein RadA [Pyrococcus sp. NA2]
Length = 354
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 126/269 (46%), Gaps = 46/269 (17%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T K LD L GG+ +TE+ G G+GKTQ L+++ LP GGL+G VI+
Sbjct: 116 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW 175
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSE----FTESLEKI 196
ID E+TF R++ EI ++G+ E+ I V + + + ++ +KI
Sbjct: 176 IDTENTFRPERIM--------EIARNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKI 227
Query: 197 KVSLLQNQ--VKLLVIDSM------EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
K LL ++ VKLL++DS+ E + G +R Q L+ H++ + LA I
Sbjct: 228 K-ELLNSEKPVKLLIVDSLTSHFRSEYIGRGALAER---QQKLAKHLADLHRLANLYEIA 283
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EA 307
+ VTNQV+ + D D TR + G AH+ T+R+ L +
Sbjct: 284 VFVTNQVQARP--------------DAFFGDPTR------PIGGHILAHSATLRVYLRKG 323
Query: 308 KSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
K G+R + +P P F I GI
Sbjct: 324 KGGKRVARLIDAPHLPEGEAVFRITEKGI 352
>gi|350590544|ref|XP_003131708.3| PREDICTED: DNA repair protein RAD51 homolog 3 [Sus scrofa]
Length = 315
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 119/278 (42%), Gaps = 72/278 (25%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH + T LD L GGVP +TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQSFIITFCSALDNILGGGVPLTKITEICGAPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
+P +GG++G ++ID E +F R++++ + + G E QP +
Sbjct: 133 VQIPECFGGVEGEAVFIDTEGSFMVNRVVDLATACIQHLHLIAGTHMEEE------QPKA 186
Query: 186 LSEFTESLEKI-----------------KVSLL------QNQVKLLVIDSMEALVPGVHE 222
L +FT LE I +V LL ++V+L+++D + P HE
Sbjct: 187 LQDFT--LENILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIA--FPFRHE 242
Query: 223 QRAPGQHPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMD 274
LS L+ SLA R+ +++TNQ+ + +E+ L P
Sbjct: 243 -----LDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDKNEALLVP------- 290
Query: 275 RILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQR 312
LG W HA TIRL+ QR
Sbjct: 291 ---------------ALGESWGHAATIRLIFHWDQRQR 313
>gi|226823355|ref|NP_001152813.1| RAD51 homolog C [Nasonia vitripennis]
Length = 314
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 131/281 (46%), Gaps = 32/281 (11%)
Query: 63 PFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
P Q L + QR + H+ L+AAL GG+ V+TEL G +GKTQ C++L
Sbjct: 53 PSQELGLDIWQRETQQE---HISLCCSELEAALGGGIQCRVITELSGVPFSGKTQICMQL 109
Query: 123 SLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQ 182
+ L YGGLDG IYID S + R ++ A E+ I +L
Sbjct: 110 CISVQLNKCYGGLDGRAIYIDTRSGTCASRFKDIVRGLNKSHKDLNLNADEVLKCIEILS 169
Query: 183 PTSLSEFTESLEKIKVSLLQN----QVKLLVIDSMEALVPGVHEQRAPGQHPLSW-HI-S 236
P S+ EF + ++ +K + N +V+L+++DS+ +P + P + P + HI
Sbjct: 170 PNSVEEFVQIIDSLKFKMKSNKDEKKVRLIIVDSLS--MPILCCIDDPTKRPYYYSHILH 227
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+ LA + + +V+TN++ V ++D KD Y++ A G + A
Sbjct: 228 KLHKLALINELAVVITNEL--------------VMQVD---KDGKSYFA---AAGGQYVA 267
Query: 297 HAVTIRLVLEAKSGQRFMN-VEKSPTSPPLAFSFTINPSGI 336
+++L + + +F + KSP P ++ +F I GI
Sbjct: 268 DYASVKLEMTRLTDHKFATCLLKSPIMPEISVTFMITEDGI 308
>gi|19114539|ref|NP_593627.1| RecA family ATPase Rhp57 [Schizosaccharomyces pombe 972h-]
gi|20178063|sp|Q9UUL2.1|RAD57_SCHPO RecName: Full=DNA repair protein rhp57; AltName: Full=RAD57 homolog
gi|5821322|dbj|BAA83768.1| DNA repair protein Rhp57 [Schizosaccharomyces pombe]
gi|12038923|emb|CAC19737.1| RecA family ATPase Rhp57 [Schizosaccharomyces pombe]
Length = 354
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 154/356 (43%), Gaps = 33/356 (9%)
Query: 9 MRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEV-RSALALVSEIVCPPFQTA 67
M + + N + I +A L E+ + LL ++++E+ R SE++ Q +
Sbjct: 1 MDISNYVDNFYFDEKIASA---FELGEVSTVDLLTLDITELERRTHCSQSELLQLIEQIS 57
Query: 68 LLLMEQR-AATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126
LLL R +A++ +L T LD L GG+P G +TE+ G +G+GK+QFC++L L+
Sbjct: 58 LLLQPVRCSASKVTSKYLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMV 117
Query: 127 ALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA---SSFPEIFHSKGMAQEMAGRILVLQP 183
LP GG++ ++I ES ++R+ E+ +P+ + + R+ +
Sbjct: 118 QLPLSLGGMNKAAVFISTESGLETKRLFELARYLPERYPKADKKDIIIKNPGDRVYTILC 177
Query: 184 TSLSEFTESLEKIKVSLLQNQVK--LLVIDSMEALVPGVHEQRAPGQH------------ 229
L E E + + ++ +L N+ K L+++DS+ + H
Sbjct: 178 PDL-ESQEHIIQYQLPILFNRDKIGLVILDSVASNYRAELRYNRSKSHFRDLDNIAKRGN 236
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVR---PQSHDESCLYPFQVQKMDRILKDRTRYYSH 286
L + +LA +V+ NQV P+ +D L+ Q D T
Sbjct: 237 QLGKLAMTLRTLAHQHEAAVVIANQVSDRIPRDYDAIGLFSLDYQSQWFSGWDDTDPNPK 296
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ------RFMNVEKSPTSPPLAFSFTINPSGI 336
I + LG W + ++ RL L K+ R V SP SP L I GI
Sbjct: 297 IPS-LGLVWTNNISTRLALIKKTDSATNNSGRIFRVVYSPNSPRLDVRICIGSVGI 351
>gi|213515370|ref|NP_001134027.1| DNA repair protein RAD51 homolog A [Salmo salar]
gi|209156210|gb|ACI34337.1| DNA repair protein RAD51 homolog A [Salmo salar]
Length = 338
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 133/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++RA + T K LD L
Sbjct: 58 ELLNIKGISEAKADKVLAEAAKLVPMGFTTATEFHQRRAEIIQI----STGSKELDKLLQ 113
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 114 GGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKAMYIDTEGTFRPERLL-- 171
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + + +++ LL++DS AL
Sbjct: 172 ---AVAERYGLVG--SDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIVDSATAL 226
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R A Q L + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 227 YRTDYSGRGELAARQGHLGRFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFSADPKK- 284
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 285 ---------------PIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAIN 329
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 330 ADGVGDAKD 338
>gi|390343400|ref|XP_788113.2| PREDICTED: DNA repair protein RAD51 homolog 3-like isoform 2
[Strongylocentrotus purpuratus]
Length = 415
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 118/262 (45%), Gaps = 45/262 (17%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGVP +TE+ G G GKTQ C++L + +PA GG++G +YID E +F
Sbjct: 130 LDEMLGGGVPMCKITEICGAPGVGKTQTCIQLCVDVQIPASLGGVEGEAVYIDTEGSFIP 189
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMA--------GRILVLQPTSLSEFTESLEKIKVSLLQ 202
+R + A + E H+ G E+ I + + E + + L +
Sbjct: 190 QRAWGI-AQAATEHCHTMGDQAELKDFTTEKILSGIHYFRCHNHVELLALVNLLPEFLSK 248
Query: 203 N-QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAE-FSRI------PIVVTNQ 254
N +VKL+++DS+ + +S L+ LA+ F RI +V+TNQ
Sbjct: 249 NPKVKLIIVDSIAFHFRHDFDD-------MSLRTRLLNGLAQNFIRIATQYNLAVVLTNQ 301
Query: 255 VRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFM 314
M + + T SH++ LG W HA TIR++L K QR+
Sbjct: 302 ------------------MTTKIGEGT---SHLIPALGESWGHACTIRVILYWKQAQRYA 340
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
N+ KSP+ + I +G+
Sbjct: 341 NLYKSPSKQEATVPYQITQAGV 362
>gi|326921096|ref|XP_003206800.1| PREDICTED: DNA repair protein XRCC3-like [Meleagris gallopavo]
Length = 347
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 150/357 (42%), Gaps = 55/357 (15%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV---CPPFQTAL 68
PK IA + A +I + K+ L+L+ +L +L+ + ++V L VS + C TAL
Sbjct: 10 PKVIAALKKA-DIKSIKEVLNLSGADLQRLMKLSSADVECLLKTVSRTLRKNC--MLTAL 66
Query: 69 LLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
L + + L LD L GG+P +TEL G + GKTQ L+L L
Sbjct: 67 QLYQDKDCLSSQCQKLSLGCSVLDDLLKGGIPLVGITELAGESSAGKTQIGLQLCLCVQY 126
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF-------PEIFHSKGMAQEMAGRILVL 181
P YGGL+ G +YI E F S+R+ ++ A PEI I V
Sbjct: 127 PYRYGGLESGAVYICTEDAFPSKRLQQLIAQQHKLRADVPPEIIQKI----RFGNSIFVE 182
Query: 182 QPTSLSEFTESLEKIKVSLL--QNQVKLLVIDSMEALVP---GVHEQRAPGQHPLSWHIS 236
L F + K ++SLL + V+L+VIDS+ AL G + ++ ++
Sbjct: 183 HAADLDTFHNCITK-RLSLLLTRGTVRLVVIDSIAALFRCEFGASDSVLKARYLQTFGAQ 241
Query: 237 LITSLAEFSRIPIVVTNQVR---PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGF 293
L L+ R PI+ NQV +S C Y + S + LG
Sbjct: 242 L-HGLSTRFRTPIMCINQVTDAVSESEAVQCGY--------------STADSRVFPALGI 286
Query: 294 HWAHAVTIRLVL------EAKSGQ--------RFMNVEKSPTSPPLAFSFTINPSGI 336
WA+ + +RL++ E G R + V +P PP +T+ G+
Sbjct: 287 TWANQLLMRLMVSRVPQPEPTPGAVSHHPASVRTLRVVFAPHLPPSFCCYTVRLEGV 343
>gi|62859281|ref|NP_001016141.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Xenopus (Silurana) tropicalis]
gi|110645694|gb|AAI18906.1| xrcc3 protein [Xenopus (Silurana) tropicalis]
Length = 348
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 158/353 (44%), Gaps = 41/353 (11%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQ-TALLL 70
P+ IA + A NI +A + L+L+ EL KL ++ +++V VS ++ TAL +
Sbjct: 10 PRIIAAVKKA-NIKSAGNILTLSVPELQKLANLSVADVHHLQRAVSAVLRKNLGVTALQI 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
++A L K LD L GGVP +TE+ G + GKTQ L+L L P
Sbjct: 69 YSEKAKFPAQHQKLSLGCKVLDNFLRGGVPLVGITEIAGESSAGKTQIGLQLCLSVQYPV 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGASSFP-------EIFHSKGMAQEMAGRILVLQP 183
YGGL G +YI E F S+R+ ++ S E+ + I V
Sbjct: 129 EYGGLASGAVYICTEDAFPSKRLQQLIKSQHKLRSDVPTEVIKNI----RFGDSIFVEHT 184
Query: 184 TSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLIT--- 239
+ TE + +K+ V LL+ ++L++IDS+ AL E A + H+ +
Sbjct: 185 ADVDTLTECITKKVPVLLLRGSIRLVIIDSIAALFRC--EFAAKDAAIKAKHLQTLGAKL 242
Query: 240 -SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
S++ P++ NQV + + +++D L+D+ +V LG W++
Sbjct: 243 HSMSNRFLTPVLCINQVTDRVRE------MNSEQIDLGLQDKK-----VVPALGISWSNQ 291
Query: 299 VTIRLVL----------EAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
+ +R+++ A R M V +P P + +T++ G+ L D
Sbjct: 292 LLMRVMVARTQHMAPAEHAGGILRTMEVVFAPHIPQSSCYYTVDLEGVKGLDD 344
>gi|198438041|ref|XP_002130341.1| PREDICTED: similar to Rad51 homolog c [Ciona intestinalis]
Length = 391
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 122/274 (44%), Gaps = 52/274 (18%)
Query: 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVI 140
+ T LD+ L GGV G +TE+ G + TGKTQ C +L+ A + YGG+ G +
Sbjct: 16 NSQISTFSSNLDSLLGGGVKVGSITEIAGESSTGKTQLCFQLATNAHIHTKYGGVGGETV 75
Query: 141 YIDVESTFTSRRMIEMGAS---SFPEIFHSKGMAQE--MAGRIL-----VLQPTSLS--- 187
YID E TF + R+ ++ + F H+ M+ + ++G L ++Q ++S
Sbjct: 76 YIDTEMTFKTERIGQIAQAMVHHFERTKHATDMSADTVLSGIYLFRCIKMVQLLAVSYQL 135
Query: 188 -EFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQ--HPLSWHISLITSLAEF 244
EF +S K VKL+++DS+ + + + + L+ ++ I SL
Sbjct: 136 FEFVKSHPK---------VKLVIVDSIAQXXRAEEDMKIRNKLLNNLAANLRKIASLL-- 184
Query: 245 SRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIR 302
+ +V+ NQV R + SC+ P LG W++ +
Sbjct: 185 -NVAVVLVNQVTTRFDEYGNSCMVP----------------------ALGESWSNIPHTK 221
Query: 303 LVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
L L G RF + KSPT P ++ I +GI
Sbjct: 222 LFLYKLQGLRFALLTKSPTQPRRKVNYVITSNGI 255
>gi|332020430|gb|EGI60850.1| DNA repair protein RAD51-like protein 1 [Acromyrmex echinatior]
Length = 340
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 125/291 (42%), Gaps = 45/291 (15%)
Query: 57 SEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKT 116
S++V F++A + + RA ++ T K LD L GG+ G +TE+ G +GK+
Sbjct: 79 SKMVMMGFKSATEVHQTRANIVYI----TTGSKELDKLLGGGIETGSITEIFGEFRSGKS 134
Query: 117 QFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM-------GASSFPEIFHSKG 169
Q C L++ LP GG +G +YID E+TF R+I + G S + ++
Sbjct: 135 QLCHTLAVNCQLPISMGGAEGKCLYIDTENTFRPERLIAVAEKYKINGQSVLDNVACARA 194
Query: 170 MAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---AP 226
+ ++L+L ++E + LL++DS L + R +
Sbjct: 195 FNTDHQTKLLLLASAMMTE--------------ARYALLIVDSATGLYRTDYTGRGELSA 240
Query: 227 GQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSH 286
Q L + ++ LA+ I +V+TNQV Q + ++ +K
Sbjct: 241 RQVHLGRFLRMLLRLADEHGIAVVITNQVVAQVDGAASMFGGDQKK-------------- 286
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AH+ T RL L G+ R V SP P +F INP GI
Sbjct: 287 --PIGGHILAHSSTTRLYLRKGRGETRICKVYDSPCLPESEATFAINPDGI 335
>gi|70606517|ref|YP_255387.1| DNA repair and recombination protein RadA [Sulfolobus
acidocaldarius DSM 639]
gi|449066729|ref|YP_007433811.1| DNA repair and recombination protein RadA [Sulfolobus
acidocaldarius N8]
gi|449069003|ref|YP_007436084.1| DNA repair and recombination protein RadA [Sulfolobus
acidocaldarius Ron12/I]
gi|76363310|sp|Q4JAT5.1|RADA_SULAC RecName: Full=DNA repair and recombination protein RadA
gi|68567165|gb|AAY80094.1| DNA recombination protein RadA [Sulfolobus acidocaldarius DSM 639]
gi|449035237|gb|AGE70663.1| DNA repair and recombination protein RadA [Sulfolobus
acidocaldarius N8]
gi|449037511|gb|AGE72936.1| DNA repair and recombination protein RadA [Sulfolobus
acidocaldarius Ron12/I]
Length = 321
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 131/300 (43%), Gaps = 51/300 (17%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R T+ + T + LD L GG+ +T
Sbjct: 59 IKEAREALDI-------RFKTALEVKKERMNTKKI----TTGSQALDGLLGGGIETRTMT 107
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C ++S+ LP GGL+G +YID E TF R+ M +
Sbjct: 108 EFFGEFGSGKTQLCHQISISVQLPQEKGGLNGKAVYIDTEGTFRWERIEAMAKGA----- 162
Query: 166 HSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPG 219
G+ ++A I ++ + ++ ++ + ++ +KL+++DS+ A PG
Sbjct: 163 ---GLESDIAMNNIYYMRAINSDHQMAIVDDLQELITKDPAIKLIIVDSITSHFRAEYPG 219
Query: 220 VHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRIL 277
E A Q L+ H+ + LAE I +++TNQV RP D
Sbjct: 220 -RENLAVRQQKLNKHLHQLVRLAEMYDIAVIITNQVMARP----------------DMFY 262
Query: 278 KDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T AV G H IR+ L+ G +R + +P P F I G+
Sbjct: 263 GDPT------TAVGGHTLYHVPGIRVQLKKSRGNKRIARIVDAPHLPEGEVVFAITEEGV 316
>gi|126277684|ref|XP_001370830.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 1
[Monodelphis domestica]
Length = 339
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 135/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA +QR+ + T K LD L
Sbjct: 59 ELINVKGISEAKADKILAEAAKLVPMGFTTATEFHQQRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEIFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSSTALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAVFAINADGVGDAKD 339
>gi|14520459|ref|NP_125934.1| DNA repair and recombination protein RadA [Pyrococcus abyssi GE5]
gi|5457674|emb|CAB49165.1| radA DNA repair protein rad51 : DNA repair and recombination
protein radA [Pyrococcus abyssi GE5]
Length = 356
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 123/265 (46%), Gaps = 38/265 (14%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T K LD L GG+ +TE+ G G+GKTQ L+++ LP GGL+G VI+
Sbjct: 118 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW 177
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSE----FTESLEKI 196
ID E+TF R+ EI ++G+ E+ I V + + + ++ +KI
Sbjct: 178 IDTENTFRPERI--------REIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKI 229
Query: 197 KVSLLQNQ-VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
K L ++ VKLL++DS+ + + R A Q L+ H++ + LA I + VT
Sbjct: 230 KELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVT 289
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQ 311
NQV+ + D D TR + G AH+ T+R+ L + K G+
Sbjct: 290 NQVQARP--------------DAFFGDPTR------PIGGHILAHSATLRVYLRKGKGGK 329
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
R + +P P F I GI
Sbjct: 330 RVARLIDAPHLPEGEAVFRITEKGI 354
>gi|34809805|pdb|1PZN|A Chain A, Rad51 (Rada)
gi|34809806|pdb|1PZN|B Chain B, Rad51 (Rada)
gi|34809807|pdb|1PZN|C Chain C, Rad51 (Rada)
gi|34809808|pdb|1PZN|D Chain D, Rad51 (Rada)
gi|34809809|pdb|1PZN|E Chain E, Rad51 (Rada)
gi|34809810|pdb|1PZN|F Chain F, Rad51 (Rada)
gi|34809811|pdb|1PZN|G Chain G, Rad51 (Rada)
Length = 349
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 130/283 (45%), Gaps = 42/283 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F A +++RA G + T K LD L GG+ +TE+ G G+GKTQ L+
Sbjct: 97 FXRADEYLKKRATI----GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 152
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
+ LP GGL+G VI+ID E+TF R+ EI ++G+ E+ I V +
Sbjct: 153 VXVQLPPEEGGLNGSVIWIDTENTFRPERI--------REIAQNRGLDPDEVLKHIYVAR 204
Query: 183 PTSLSE----FTESLEKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQR---APGQHPLSWH 234
+ + ++ +KIK L ++ VKLL++DS+ + + R A Q L+ H
Sbjct: 205 AFNSNHQXLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 264
Query: 235 ISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
++ + LA I + VTNQV+ + D D TR + G
Sbjct: 265 LADLHRLANLYDIAVFVTNQVQARP--------------DAFFGDPTR------PIGGHI 304
Query: 295 WAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
AH+ T+R+ L + K G+R + +P P F+I GI
Sbjct: 305 LAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGI 347
>gi|387912860|sp|Q9V233.2|RADA_PYRAB RecName: Full=DNA repair and recombination protein RadA
gi|380740983|tpe|CCE69617.1| TPA: DNA repair and recombination protein RadA [Pyrococcus abyssi
GE5]
Length = 353
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 123/265 (46%), Gaps = 38/265 (14%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T K LD L GG+ +TE+ G G+GKTQ L+++ LP GGL+G VI+
Sbjct: 115 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW 174
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSE----FTESLEKI 196
ID E+TF R+ EI ++G+ E+ I V + + + ++ +KI
Sbjct: 175 IDTENTFRPERI--------REIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKI 226
Query: 197 KVSLLQNQ-VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
K L ++ VKLL++DS+ + + R A Q L+ H++ + LA I + VT
Sbjct: 227 KELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVT 286
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQ 311
NQV+ + D D TR + G AH+ T+R+ L + K G+
Sbjct: 287 NQVQARP--------------DAFFGDPTR------PIGGHILAHSATLRVYLRKGKGGK 326
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
R + +P P F I GI
Sbjct: 327 RVARLIDAPHLPEGEAVFRITEKGI 351
>gi|315426193|dbj|BAJ47837.1| DNA repair protein RadA, partial [Candidatus Caldiarchaeum
subterraneum]
Length = 316
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 49/332 (14%)
Query: 24 ITTAKDALSLTELELMKL-LDVELSE---VRSALALV-SEIVCPPFQTALLLMEQRAATE 78
IT+ D + T EL++L + E +E +++ L L+ S + F A ++E+R A +
Sbjct: 18 ITSVLDLAAATPRELVELGISAEKAEELCLKARLLLIESGFLDKEFVPATEVLERRKAMQ 77
Query: 79 HLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGG 138
L T + LDA L GGV +TEL+G G+GKTQ C L ++A LP GGL+G
Sbjct: 78 RL----TTGSRALDAMLGGGVETQAITELIGEFGSGKTQVCHTLCVMAQLPREQGGLEGS 133
Query: 139 VIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIK 197
IYID E+TF R+ +I ++G+ Q++ I+ + S +++++
Sbjct: 134 AIYIDTEATFRPERI--------SQIAEARGLDPQKILENIIFASVYNSSHLQLTVKELG 185
Query: 198 VSLLQNQVKLLVIDSM------EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVV 251
+ + + +L++IDS+ E + G +R Q L+ + + A+ I +V+
Sbjct: 186 RYVEKYKARLVIIDSIISHFRAEFIGRGTLAER---QQRLNDLLHRLLRTAQVHNIAVVL 242
Query: 252 TNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSG 310
TNQV+ D+ D + G AH+ T R+ + A +
Sbjct: 243 TNQVQANP--------------DQFFGDPNKPSG------GHVLAHSSTYRIFIRRAANN 282
Query: 311 QRFMNVEKSPTSPPLAFS-FTINPSGISLLTD 341
R + SP PP A + F I G+ L +
Sbjct: 283 TRLARIIDSPYHPPTAEAYFKITEKGVEDLQE 314
>gi|223477408|ref|YP_002581811.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4]
gi|214032634|gb|EEB73463.1| DNA repair and recombination protein RadA [Thermococcus sp. AM4]
Length = 352
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 125/284 (44%), Gaps = 44/284 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F A ME+R G + T K LD L GG+ +TE+ G G+GKTQ L+
Sbjct: 100 FMRADEYMEKRKTI----GKISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 155
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
++ P GGL G VI+ID E+TF R+ +I ++G+ E I V +
Sbjct: 156 VMVQKPPEEGGLGGSVIWIDTENTFRPERI--------RQIAEARGLDPDETLKNIYVAR 207
Query: 183 PTS------LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSW 233
+ L E E + K K + VKLLV+DS+ A + R A Q L+
Sbjct: 208 AFNSNHQMLLVEKAEEIIKEKAT-TDRPVKLLVVDSLMAHFRSEYVGRGSLAERQQKLAK 266
Query: 234 HISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGF 293
H++ + LA+ I + VTNQV+ K D D TR V G
Sbjct: 267 HLADLHRLADLYDIAVFVTNQVQA--------------KPDAFFGDPTR------PVGGH 306
Query: 294 HWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
AH+ T+R+ L + K+G+R + SP P F I G+
Sbjct: 307 ILAHSATLRIYLRKGKAGKRVARLIDSPHLPEGEAVFRITERGV 350
>gi|13878702|sp|Q9Y8J4.1|RADA_DESAM RecName: Full=DNA repair and recombination protein RadA
gi|4929344|gb|AAD33955.1|AF145465_1 recombination/repair protein RadA [Desulfurococcus amylolyticus
Z-533]
Length = 328
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 124/281 (44%), Gaps = 43/281 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA + ++R+ G + T K LD L GGV +TE G G+GKTQ C +LS
Sbjct: 77 FKTAREVKQERSNI----GKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLS 132
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
+ L GGL+G +YID E TF R+ M + G+ ++ I ++
Sbjct: 133 VNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMA--------RALGLDPDKVMDNIYYMR 184
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLI 238
+ ++++ + +N V+L+++DS+ A PG E A Q L+ H+ +
Sbjct: 185 AYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPG-REHLAERQQKLNSHLHQL 243
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
LAE + +VVTNQV RP D D T AV G A
Sbjct: 244 MRLAEAYNVAVVVTNQVMARP----------------DVFYGDPT------TAVGGHVLA 281
Query: 297 HAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
H +R+ L ++K +R V +P P F I GI
Sbjct: 282 HTPGVRIQLRKSKGNKRIARVVDAPHLPEGEVVFVITEEGI 322
>gi|11498598|ref|NP_069826.1| DNA repair and recombination protein RadA [Archaeoglobus fulgidus
DSM 4304]
gi|3914552|sp|O29269.1|RADA_ARCFU RecName: Full=DNA repair and recombination protein RadA
gi|2649602|gb|AAB90248.1| DNA repair protein RAD51 (radA) [Archaeoglobus fulgidus DSM 4304]
Length = 337
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 123/283 (43%), Gaps = 42/283 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F++ ++E+R + + + T K LD L GGV +TE G G+GKTQ C +L+
Sbjct: 74 FESGDKVLERRRSVKKI----TTGSKDLDELLGGGVETQAITEFFGEFGSGKTQICHQLA 129
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS---SFPEIFHSKGMAQEMAGRILV 180
+ LP GGL+G VI ID E+TF R+I+M + E+ + +AQ +
Sbjct: 130 VNVQLPEDEGGLEGSVIIIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQM 189
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISL 237
L + E E L+K V+L+++DS+ + + R A Q L+ H+
Sbjct: 190 LLVDNAKELAEKLKK-----EGRPVRLIIVDSLMSHFRAEYVGRGTLADRQQKLNRHLHD 244
Query: 238 ITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAVLGFH 294
+ E IVVTNQV RP D + D T+ HIV
Sbjct: 245 LMKFGELYNAAIVVTNQVMARP----------------DVLFGDPTKPVGGHIV------ 282
Query: 295 WAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
AH T R+ L + K R + SP P F + GI
Sbjct: 283 -AHTATFRIYLKKGKDDLRIARLIDSPHLPEGEAIFRVTERGI 324
>gi|390939022|ref|YP_006402760.1| DNA repair and recombination protein RadA [Desulfurococcus
fermentans DSM 16532]
gi|390192129|gb|AFL67185.1| DNA repair and recombination protein RadA [Desulfurococcus
fermentans DSM 16532]
Length = 328
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 123/281 (43%), Gaps = 43/281 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA + ++R G + T K LD L GGV +TE G G+GKTQ C +LS
Sbjct: 77 FKTAREVKQERLNI----GKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLS 132
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
+ L GGL+G +YID E TF R+ M + G+ ++ I ++
Sbjct: 133 VNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMA--------RALGLDPDKVMDNIYYMR 184
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLI 238
+ ++++ + +N VKL+V+DS+ A PG E A Q L+ H+ +
Sbjct: 185 AYNSDHQIAIVDELFTFVPKNDVKLVVLDSVTSHFRAEYPG-REHLAERQQKLNSHLHQL 243
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
LAE + +VVTNQV RP D D T AV G A
Sbjct: 244 MRLAEAYNVAVVVTNQVMARP----------------DVFYGDPT------TAVGGHVLA 281
Query: 297 HAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
H +R+ L ++K +R V +P P F I GI
Sbjct: 282 HTPGVRVQLRKSKGNKRIARVVDAPHLPEGEVVFVITEEGI 322
>gi|343485007|dbj|BAJ50661.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
Length = 333
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 49/332 (14%)
Query: 24 ITTAKDALSLTELELMKL-LDVELSE---VRSALALV-SEIVCPPFQTALLLMEQRAATE 78
IT+ D + T EL++L + E +E +++ L L+ S + F A ++E+R A +
Sbjct: 35 ITSVLDLAAATPRELVELGISAEKAEELCLKARLLLIESGFLDKEFVPATEVLERRKAMQ 94
Query: 79 HLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGG 138
L T + LDA L GGV +TEL+G G+GKTQ C L ++A LP GGL+G
Sbjct: 95 RL----TTGSRALDAMLGGGVETQAITELIGEFGSGKTQVCHTLCVMAQLPREQGGLEGS 150
Query: 139 VIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIK 197
IYID E+TF R+ +I ++G+ Q++ I+ + S +++++
Sbjct: 151 AIYIDTEATFRPERI--------SQIAEARGLDPQKILENIIFASVYNSSHLQLTVKELG 202
Query: 198 VSLLQNQVKLLVIDSM------EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVV 251
+ + + +L++IDS+ E + G +R Q L+ + + A+ I +V+
Sbjct: 203 RYVEKYKARLVIIDSIISHFRAEFIGRGTLAER---QQRLNDLLHRLLRTAQVHNIAVVL 259
Query: 252 TNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL-VLEAKSG 310
TNQV+ D+ D + G AH+ T R+ + A +
Sbjct: 260 TNQVQANP--------------DQFFGDPNKPSG------GHVLAHSSTYRIFIRRAANN 299
Query: 311 QRFMNVEKSPTSPPLAFS-FTINPSGISLLTD 341
R + SP PP A + F I G+ L +
Sbjct: 300 TRLARIIDSPYHPPTAEAYFKITEKGVEDLQE 331
>gi|109689248|dbj|BAE96778.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689250|dbj|BAE96779.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689252|dbj|BAE96780.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689254|dbj|BAE96781.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 116/262 (44%), Gaps = 41/262 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GGV +TEL G G+GKTQ C +LS+ LP GGL+G +YID
Sbjct: 86 ITTGSRNLDELLGGGVETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYID 145
Query: 144 VESTFTSRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
E TF R+ +M G P+ E+ I ++ + ++K+ +
Sbjct: 146 TEGTFRWERIEQMARGVGLDPD---------EVMKNIYWIRAINSHHQIAIVDKLFTMVK 196
Query: 202 QNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV-- 255
+ +KL+V+DS+ A PG E A Q L+ H+ + LA+ + +V+TNQV
Sbjct: 197 NDNIKLVVVDSVTSHFRAEFPG-RENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMA 255
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
RP D D T+ AV G HA +R+ L+ G +R
Sbjct: 256 RP----------------DVFYGDPTQ------AVGGHVLGHAPGVRVYLKKSRGNKRIA 293
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
V +P P F I GI
Sbjct: 294 RVVDAPHLPEGETVFAITEWGI 315
>gi|1378036|gb|AAC44123.1| RadA [Sulfolobus solfataricus]
Length = 324
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 49/299 (16%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEVKKERMNVKKIS----TGSQALDGLLAGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C +LS+ LP GGL G +YID E TF R+ M + +I
Sbjct: 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI- 169
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPGV 220
+ I ++ + ++ ++ + ++ +KL+V+DS+ A PG
Sbjct: 170 ------DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG- 222
Query: 221 HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILK 278
E A Q L+ H+ +T LAE I +++TNQV RP D
Sbjct: 223 REILAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP----------------DMFYG 266
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ L+ G +R V +P P F + GI
Sbjct: 267 DPT------VAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319
>gi|297527452|ref|YP_003669476.1| DNA repair and recombination protein RadA [Staphylothermus
hellenicus DSM 12710]
gi|297256368|gb|ADI32577.1| DNA repair and recombination protein RadA [Staphylothermus
hellenicus DSM 12710]
Length = 319
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 140/329 (42%), Gaps = 39/329 (11%)
Query: 14 SIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQ 73
SIAN + TT + EL + + + L + +++ F+TA + +
Sbjct: 19 SIANKLESAGFTTPWAIVVSRAEELAEKVGIPLHTAERIIVNTRKLLGIRFKTAKEVKLE 78
Query: 74 RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYG 133
R + + T K LD L GG+ +TE G GTGKTQ C +LS+ LP G
Sbjct: 79 RLSVRKI----TTGSKNLDDLLGGGIETKTITEFYGEYGTGKTQICHQLSVSVQLPPERG 134
Query: 134 GLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESL 193
GL G +Y+D E TF R+ M G+ + A + Q S+ ++
Sbjct: 135 GLAGKAVYVDTEGTFRWERIEAMA--------RGLGLDPDEAMENIYYQRAYNSDHQIAI 186
Query: 194 -EKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
E++ + ++ KL+VIDS+ A PG E A Q L+ H+ + LAE I
Sbjct: 187 VEELFSFVPEHDAKLVVIDSVTSHFRAEYPG-RENLATRQQKLNKHLHQLVRLAEAYNIA 245
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EA 307
+VVTNQV + + D D T+ AV G AH +R+ L +A
Sbjct: 246 VVVTNQV--------------MARPDVFYGDPTQ------AVGGHVLAHTPGVRIQLRKA 285
Query: 308 KSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
K +R V +P P F I GI
Sbjct: 286 KGHKRIARVVDAPHLPEGEAIFVIVDEGI 314
>gi|341582518|ref|YP_004763010.1| DNA repair and recombination protein RadA [Thermococcus sp. 4557]
gi|340810176|gb|AEK73333.1| DNA repair and recombination protein RadA [Thermococcus sp. 4557]
Length = 354
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 125/283 (44%), Gaps = 44/283 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F A ME+R+ G + T K LD + GGV +TE+ G G+GKTQ L+
Sbjct: 102 FMRADEYMERRSTI----GRISTGSKSLDKLVGGGVETQAITEVFGEFGSGKTQLAHTLA 157
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
++ LP GGL G V++ID E+TF R+ +I ++G+ E I V +
Sbjct: 158 VMVQLPEEEGGLHGSVVWIDTENTFRPERI--------RQIAEARGLDPDETLKNIYVAR 209
Query: 183 PTS------LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSW 233
+ L E E + K K VKLLV+DS+ A + R A Q L+
Sbjct: 210 AFNSNHQMLLVERAEEIIKEKAE-TDRPVKLLVVDSLMAHFRSEYVGRGTLAERQQKLAK 268
Query: 234 HISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGF 293
H++ + +A+ I + VTNQV+ K D D TR V G
Sbjct: 269 HLADLHRIADLYDIAVFVTNQVQA--------------KPDAFFGDPTR------PVGGH 308
Query: 294 HWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSG 335
AH+ T+R+ L + K+G+R + SP P F I G
Sbjct: 309 ILAHSATLRIYLRKGKAGKRVARLIDSPHLPEGEAIFRITDKG 351
>gi|15920489|ref|NP_376158.1| DNA repair and recombination protein RadA [Sulfolobus tokodaii str.
7]
gi|20139589|sp|Q975Y1.1|RADA_SULTO RecName: Full=DNA repair and recombination protein RadA
gi|15621272|dbj|BAB65267.1| DNA repair and recombination protein RadA [Sulfolobus tokodaii str.
7]
Length = 324
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 129/305 (42%), Gaps = 61/305 (20%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R T+ + T + LD L GG+ +T
Sbjct: 62 IKEAREALDI-------RFKTALEVKKERINTKKI----TTGSQALDGLLGGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA------- 158
EL G G+GKTQ C +LS+ LP GGL G +YID E TF R+ M
Sbjct: 111 ELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGKAVYIDTEGTFRWERIEAMSKAIGLEPD 170
Query: 159 SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----E 214
S+ I++ + + + Q + + E + K +KL+++DS+
Sbjct: 171 SAMNNIYYMRAINSDH-------QMAIVDDLQELISK------DPAIKLVIVDSVTSHFR 217
Query: 215 ALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQK 272
A PG E A Q L+ H+ + LAE + +++TNQV RP
Sbjct: 218 AEFPG-RENLAVRQQKLNKHLHQLVRLAEMYDLAVIITNQVMARP--------------- 261
Query: 273 MDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTI 331
D D T VAV G H IR+ L+ G +R + +P P F I
Sbjct: 262 -DMFYGDPT------VAVGGHTLYHVPGIRVQLKKSRGNKRIARIVDAPHLPEGEVVFAI 314
Query: 332 NPSGI 336
G+
Sbjct: 315 TEEGV 319
>gi|147900484|ref|NP_001081236.1| DNA repair protein RAD51 homolog A [Xenopus laevis]
gi|2500105|sp|Q91918.1|RA51A_XENLA RecName: Full=DNA repair protein RAD51 homolog A; Short=xRAD51.1
gi|1054624|dbj|BAA07501.1| XRad51.1 [Xenopus laevis]
gi|57033002|gb|AAH88930.1| LOC397726 protein [Xenopus laevis]
Length = 336
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 134/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 56 ELLNIKGISEAKAEKILAEAAKLVPMGFTTATEFHQRRSEIIQI----STGSKELDKLLQ 111
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GGV G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 112 GGVETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 169
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + + +++ LL++DS AL
Sbjct: 170 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIVDSATAL 224
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 225 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 282
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 283 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 327
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 328 ADGVGDAKD 336
>gi|327259038|ref|XP_003214345.1| PREDICTED: DNA repair protein XRCC3-like [Anolis carolinensis]
Length = 375
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 154/360 (42%), Gaps = 52/360 (14%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP-FQTALLL 70
P+ IA I A N+ + ++ +L++ +L ++ + +V+ L +S V TAL L
Sbjct: 34 PRVIAAIKRA-NLKSVREIFNLSQSDLQRVTKLSSVDVQYLLKTISSAVRKKHVLTALQL 92
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+ + L P LD L GG+P +TE+ G + GKTQ L+L+L P
Sbjct: 93 FKDKNQRRKLSLGCPV----LDGFLQGGIPLTGITEIAGESSAGKTQIALQLALSIQYPY 148
Query: 131 HYGGLDGGVIYIDVESTFTSRR---MIEMGAS---SFPEIFHSKGMAQEMAGRILVLQPT 184
YGGL+ G +YI E F ++R +I+ A+ P I K + RI V
Sbjct: 149 KYGGLESGAVYICTEDAFPNKRLQQLIQQQANLRDDVPPIVVQK---IKFGNRIFVEHTA 205
Query: 185 SLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVP---GVHEQRAPGQHPLSWHISLITS 240
L F + +I + L + V+L+++DS+ AL G + ++ L + L
Sbjct: 206 DLDAFRNCITNRIGILLSRGMVRLIIVDSIAALFRCEFGAKDSVLKAKYLLMFGAKLHEL 265
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMD---RILKDRTRYYSHIVAVLGFHWAH 297
++F +IPIV NQV MD R + + + LG W++
Sbjct: 266 SSQF-QIPIVCINQV--------------TDTMDTAGRAVHSPSCTAQRVAPALGITWSN 310
Query: 298 AVTIRLVL---------------EAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDD 342
+ +RL+ + R + V +P P + +TIN G+ + +D
Sbjct: 311 QLLMRLMASRTVHFTQTANDAHQHNRGALRTLRVIFAPHLPQTSCQYTINLEGVRGIKED 370
>gi|224050703|ref|XP_002196004.1| PREDICTED: DNA repair protein RAD51 homolog 1 [Taeniopygia guttata]
Length = 339
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 134/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELLNIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + ++L ++E ++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMAE--------------SRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>gi|296215965|ref|XP_002754356.1| PREDICTED: DNA repair protein XRCC3 [Callithrix jacchus]
Length = 346
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 152/349 (43%), Gaps = 45/349 (12%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA + A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 10 PRIIAAVKKAK-LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALHL 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+Q+ L LDA L GG+P +TEL G + GKTQ L+L L P
Sbjct: 69 HQQKEQFPAQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPR 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT 190
+GGL+ G +YI E F +R+ ++ A H + ++ G +L P+ F
Sbjct: 129 QHGGLESGAVYICTEDAFPHKRLQQLMA-------HQPRLRTDVPGELLQRLPSGSQIFI 181
Query: 191 ESL-----------EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLI 238
E +K+ V L + +L+VIDS+ A P E + P + H+ SL
Sbjct: 182 EHAADVDTLLECVNKKVPVLLSRGMARLVVIDSVAA--PFRCEFDSQASVPRARHLQSLG 239
Query: 239 TSLAEFS---RIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHW 295
+L E S + P++ NQV ++ + + I LG W
Sbjct: 240 ATLRELSSTFQSPVLCINQVTEAMEEQGTAH-----------GPPGFWDERIFPALGITW 288
Query: 296 AHAVTIRLVL------EAKSGQ--RFMNVEKSPTSPPLAFSFTINPSGI 336
A+ + +RL+ EA GQ R + V +P PP + S+TI+ G+
Sbjct: 289 ANQLLVRLLADRLREEEAALGQPVRTLRVLFAPHLPPSSCSYTISTEGV 337
>gi|296242500|ref|YP_003649987.1| DNA repair and recombination protein RadA [Thermosphaera aggregans
DSM 11486]
gi|296095084|gb|ADG91035.1| DNA repair and recombination protein RadA [Thermosphaera aggregans
DSM 11486]
Length = 326
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 111/263 (42%), Gaps = 43/263 (16%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ +TE G G+GKTQ C +LS+ LP GGL G +Y+D
Sbjct: 91 ITTGSKSLDDLLGGGIETKTITEFYGEYGSGKTQICHQLSVNVQLPPERGGLSGKAVYVD 150
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQE---MAGRILVLQPTSLSEFTESLEKIKVSL 200
E TF R+ M ++G+ E + I ++ + ++ + +
Sbjct: 151 TEGTFRWERIEAM----------ARGLGLEPDQVMDNIFYMRAYNSDHQVSIIDDLFTFV 200
Query: 201 LQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV- 255
+N V+L+V+DS+ A PG E A Q L+ H+ + LAE I +VVTNQV
Sbjct: 201 PKNDVRLVVVDSVTSHFRAEFPG-REHLAERQQKLNAHLHQLMRLAEAFNIAVVVTNQVM 259
Query: 256 -RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRF 313
RP Y AV G AH +R+ L +K +R
Sbjct: 260 ARPDVF----------------------YGDPTTAVGGHVLAHTPGVRVQLRRSKGNKRI 297
Query: 314 MNVEKSPTSPPLAFSFTINPSGI 336
V +P P F I GI
Sbjct: 298 ARVVDAPHLPEGEAVFVITEEGI 320
>gi|350537799|ref|NP_001233686.1| DNA repair protein RAD51 homolog 1 [Cricetulus griseus]
gi|2500103|sp|P70099.1|RAD51_CRIGR RecName: Full=DNA repair protein RAD51 homolog 1
gi|1552258|emb|CAA69384.1| rad51 [Cricetulus griseus]
gi|344253210|gb|EGW09314.1| DNA repair protein RAD51-like 1 [Cricetulus griseus]
Length = 339
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 135/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R V SP P
Sbjct: 280 TADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKVYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>gi|298676052|ref|YP_003727802.1| DNA repair and recombination protein RadA [Methanohalobium
evestigatum Z-7303]
gi|298289040|gb|ADI75006.1| DNA repair and recombination protein RadA [Methanohalobium
evestigatum Z-7303]
Length = 325
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 130/291 (44%), Gaps = 50/291 (17%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T L+ME+R G L T D + GG+ +TEL G G+GKTQ +L+
Sbjct: 66 FETGDLVMERRKQV----GKLSTGCSEFDEMMEGGIDTQSITELYGEFGSGKTQIAHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM--GASSF------PEIFHSK---GMAQ 172
+ LP GGL+G VI+ID E+TF R+ +M GAS PE F A
Sbjct: 122 VNVQLPNEQGGLNGSVIFIDTENTFRPERIKQMVQGASEHHNIDYDPEEFLKNIHVARAY 181
Query: 173 EMAGRILVLQPT-SLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQ 228
+IL++ L+E +++ E+ V+LL++DS+ A + R A Q
Sbjct: 182 NSNHQILLMDSAMELAEESKNWEQ--------PVRLLIVDSLTAHFRAEYIGRGTLADRQ 233
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHI 287
L+ H+ + ++ I+VTNQV + K D D T+ HI
Sbjct: 234 QKLNKHLHALQRFSDLYNAVIIVTNQV--------------MSKPDAFFGDPTKPIGGHI 279
Query: 288 VAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
+ H T R+ L ++K +R + + SP P ++ P G++
Sbjct: 280 I-------GHTATFRMYLRKSKGDKRIVRLVDSPNLPDGESIISVTPLGLT 323
>gi|348579949|ref|XP_003475741.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 1 [Cavia
porcellus]
Length = 339
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 135/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>gi|219112089|ref|XP_002177796.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
CCAP 1055/1]
gi|217410681|gb|EEC50610.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
CCAP 1055/1]
Length = 363
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 147/355 (41%), Gaps = 66/355 (18%)
Query: 17 NIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV---CPPFQTALLLMEQ 73
+ R +T +K + L L + LS+ + A V + P +TA L+E+
Sbjct: 23 GFYGTRELTESKQS---GMANLAAELALNLSQTSALYAEVDSCLRTTTPVTKTAAALLEE 79
Query: 74 RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYG 133
+ G + T + +D L GG+ G +TE+ GP G GKTQ+ ++L++ A LP +G
Sbjct: 80 NVEGQ---GCIITFCRHVDTLLGGGIAMGELTEIAGPPGVGKTQWGMQLAVDARLPNTFG 136
Query: 134 GLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI----------LVLQP 183
G+ G +Y+D E +F+ R +M S I + QE ++ +LQ
Sbjct: 137 GVAGETVYVDTEGSFSPERCHDMATSLVQHIEAGRRRRQEKGQKLQPMPAWFAPDTILQG 196
Query: 184 TSLSEFTESLEKIKV-----SLLQNQ------VKLLVIDSMEALVPGVHEQRAPGQ---- 228
+ + + V LQ++ V+L+V+DSM H + AP
Sbjct: 197 IHVYRVHDEAAQTSVLYSLPKFLQDRQEAGTPVRLVVVDSM-----AFHHRAAPPNSDFV 251
Query: 229 ---HPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYS 285
L+ + +T+LA S I +V NQ+ K T S
Sbjct: 252 GRTRSLTSQAAFLTNLAAQSGIAVVAINQM--------------------TTKMTTSEAS 291
Query: 286 HIVAVLGFHWAHAVTIRLVLEA----KSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
V LG WAHAVT R++L +G R + KSP + + I GI
Sbjct: 292 KQVPALGESWAHAVTTRILLSRPISDTNGVRTCTLVKSPRLASGSADYQILQCGI 346
>gi|157822405|ref|NP_001102674.1| DNA repair protein RAD51 homolog 1 [Rattus norvegicus]
gi|149022997|gb|EDL79891.1| similar to DNA repair protein RAD51 homolog 1 (predicted) [Rattus
norvegicus]
gi|197246432|gb|AAI68875.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Rattus
norvegicus]
Length = 339
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 135/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>gi|334350818|sp|P0CW91.1|RADA_AERPX RecName: Full=DNA repair and recombination protein RadA
gi|18181985|dbj|BAB83900.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|18181995|dbj|BAB83905.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|18181997|dbj|BAB83906.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|18181999|dbj|BAB83907.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|18182003|dbj|BAB83909.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|18182005|dbj|BAB83910.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689234|dbj|BAE96771.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689238|dbj|BAE96773.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689240|dbj|BAE96774.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689242|dbj|BAE96775.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689244|dbj|BAE96776.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
gi|109689246|dbj|BAE96777.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 116/262 (44%), Gaps = 41/262 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GG+ +TEL G G+GKTQ C +LS+ LP GGL+G +YID
Sbjct: 86 ITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYID 145
Query: 144 VESTFTSRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
E TF R+ +M G P+ E+ I ++ + ++K+ +
Sbjct: 146 TEGTFRWERIEQMARGVGLDPD---------EVMKNIYWIRAINSHHQIAIVDKLFTMVK 196
Query: 202 QNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV-- 255
+ +KL+V+DS+ A PG E A Q L+ H+ + LA+ + +V+TNQV
Sbjct: 197 NDNIKLVVVDSVTSHFRAEFPG-RENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMA 255
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
RP D D T+ AV G HA +R+ L+ G +R
Sbjct: 256 RP----------------DVFYGDPTQ------AVGGHVLGHAPGVRVYLKKSRGNKRIA 293
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
V +P P F I GI
Sbjct: 294 RVVDAPHLPEGETVFAITEWGI 315
>gi|18181993|dbj|BAB83904.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 116/262 (44%), Gaps = 41/262 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GG+ +TEL G G+GKTQ C +LS+ LP GGL+G +YID
Sbjct: 86 ITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYID 145
Query: 144 VESTFTSRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
E TF R+ +M G P+ E+ I ++ + ++K+ +
Sbjct: 146 TEGTFRWERIEQMARGVGLDPD---------EVMKNIYWIRAINSHHQIAIVDKLFTMVK 196
Query: 202 QNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV-- 255
+ +KL+V+DS+ A PG E A Q L+ H+ + LA+ + +V+TNQV
Sbjct: 197 NDNIKLVVVDSVTSHFRAEFPG-RENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMA 255
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
RP D D T+ AV G HA +R+ L+ G +R
Sbjct: 256 RP----------------DVFYGDPTQ------AVGGHVLGHAPGVRVYLKKSRGSKRIA 293
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
V +P P F I GI
Sbjct: 294 RVVDAPHLPEGETVFAITEWGI 315
>gi|344293992|ref|XP_003418703.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Loxodonta
africana]
Length = 339
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 135/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>gi|18182001|dbj|BAB83908.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 116/262 (44%), Gaps = 41/262 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GG+ +TEL G G+GKTQ C +LS+ LP GGL+G +YID
Sbjct: 86 ITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYID 145
Query: 144 VESTFTSRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
E TF R+ +M G P+ E+ I ++ + ++K+ +
Sbjct: 146 TEGTFRWERIEQMARGVGLDPD---------EVMKNIYWIRAINSHHQIAIVDKLFTMVK 196
Query: 202 QNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV-- 255
+ +KL+V+DS+ A PG E A Q L+ H+ + LA+ + +V+TNQV
Sbjct: 197 NDNIKLVVVDSVTSHFRAEFPG-RENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMA 255
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
RP D D T+ AV G HA +R+ L+ G +R
Sbjct: 256 RP----------------DVFYGDPTQ------AVGGHVLGHAPGVRVYLKKSRGNKRIA 293
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
V +P P F I GI
Sbjct: 294 RVVDAPHLPEGEAVFAITEWGI 315
>gi|322780402|gb|EFZ09890.1| hypothetical protein SINV_00924 [Solenopsis invicta]
Length = 310
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 133/315 (42%), Gaps = 45/315 (14%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T+ EL+ + + ++ S++V F++A + + RA ++ T K LD
Sbjct: 26 TKKELIAIKGISEAKAEKLQQEASKMVMMGFKSATEIHQTRANIVYI----TTGSKELDK 81
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+ G +TEL G +GK+Q C L++ LP GG +G +YID E+TF R+
Sbjct: 82 LLGGGIETGSITELFGEFRSGKSQLCHTLAVNCQLPISMGGAEGKCLYIDTENTFRPERL 141
Query: 154 IEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVK 206
I + G S + ++ + ++L+L ++E +
Sbjct: 142 IAVAEKYKINGPSVLDNVACARAYNTDHQTQLLMLASAMMTE--------------ARYA 187
Query: 207 LLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDES 263
LLV+DS L + R Q+ L + ++ LA+ I +V+TNQV Q +
Sbjct: 188 LLVVDSATGLYRTDYSGRGELGARQNHLGRFLRMLLRLADEYGIAVVITNQVVAQVDGAA 247
Query: 264 CLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTS 322
++ +K + G AH+ T RL L G+ R + SP
Sbjct: 248 SMFGGDQKK----------------PIGGHILAHSSTTRLYLRKGRGETRICKIYDSPCL 291
Query: 323 PPLAFSFTINPSGIS 337
P +F IN GI
Sbjct: 292 PESEATFAINQDGIG 306
>gi|62858453|ref|NP_001016393.1| RAD51 homolog [Xenopus (Silurana) tropicalis]
gi|134254224|gb|AAI35426.1| hypothetical protein LOC549147 [Xenopus (Silurana) tropicalis]
Length = 336
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 134/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 56 ELINIKGISEAKAEKILAEAAKLVPMGFTTATEFHQRRSEIIQI----STGSKELDKLLQ 111
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 112 GGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 169
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + + +++ LL++DS AL
Sbjct: 170 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIVDSATAL 224
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 225 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 282
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 283 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 327
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 328 ADGVGDAKD 336
>gi|62738997|pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
Structure Of A Crenarchaeal Rada
Length = 324
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 129/300 (43%), Gaps = 51/300 (17%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + + T + LD L GG+ T
Sbjct: 62 IKEARDALDI-------RFKTALEVKKERXNVKKIS----TGSQALDGLLAGGIETRTXT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C +LS+ LP GGL G +YID E TF R IE A +
Sbjct: 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWER-IENXAKAL---- 165
Query: 166 HSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPG 219
G+ + I ++ + ++ ++ + ++ +KL+V+DS+ A PG
Sbjct: 166 ---GLDIDNVXNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222
Query: 220 VHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRIL 277
E A Q L+ H+ +T LAE I +++TNQV RP D
Sbjct: 223 -RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVXARP----------------DXFY 265
Query: 278 KDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ L+ G +R V +P P F + GI
Sbjct: 266 GDPT------VAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319
>gi|397827|dbj|BAA02962.1| HsRad51 [Homo sapiens]
Length = 339
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 135/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 172
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + +++++ LL++DS AL
Sbjct: 173 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATAL 227
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 228 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 285
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 286 ---------------PIGGNIIAHASTTRLYLRKGRGETRICQIYDSPCLPEAEAMFAIN 330
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 331 ADGVGDAKD 339
>gi|403289415|ref|XP_003935854.1| PREDICTED: DNA repair protein RAD51 homolog 1 [Saimiri boliviensis
boliviensis]
Length = 324
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 135/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 44 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 99
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 100 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 157
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + +++++ LL++DS AL
Sbjct: 158 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATAL 212
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 213 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 270
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 271 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAIFAIN 315
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 316 ADGVGDAKD 324
>gi|19924133|ref|NP_002866.2| DNA repair protein RAD51 homolog 1 isoform 1 [Homo sapiens]
gi|114656377|ref|XP_001144621.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 3 [Pan
troglodytes]
gi|297696332|ref|XP_002825350.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 1 [Pongo
abelii]
gi|332235183|ref|XP_003266786.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 1 [Nomascus
leucogenys]
gi|397512609|ref|XP_003826633.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 1 [Pan
paniscus]
gi|397512613|ref|XP_003826635.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 3 [Pan
paniscus]
gi|402873987|ref|XP_003900829.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 1 [Papio
anubis]
gi|548663|sp|Q06609.1|RAD51_HUMAN RecName: Full=DNA repair protein RAD51 homolog 1; Short=HsRAD51;
Short=hRAD51; AltName: Full=RAD51 homolog A
gi|285977|dbj|BAA03189.1| RAD51 [Homo sapiens]
gi|5733658|gb|AAD49705.1| Rad51 [Homo sapiens]
gi|7767554|gb|AAF69145.1| RAD51 [Homo sapiens]
gi|27368250|gb|AAN87149.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Homo
sapiens]
gi|49168602|emb|CAG38796.1| RAD51 [Homo sapiens]
gi|60817856|gb|AAX36441.1| RAD51-like [synthetic construct]
gi|61358913|gb|AAX41640.1| RAD51-like [synthetic construct]
gi|119612840|gb|EAW92434.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform
CRA_d [Homo sapiens]
gi|189069251|dbj|BAG36283.1| unnamed protein product [Homo sapiens]
gi|261860564|dbj|BAI46804.1| RAD51 homolog [synthetic construct]
gi|355692613|gb|EHH27216.1| hypothetical protein EGK_17369 [Macaca mulatta]
gi|383414637|gb|AFH30532.1| DNA repair protein RAD51 homolog 1 isoform 1 [Macaca mulatta]
gi|387540962|gb|AFJ71108.1| DNA repair protein RAD51 homolog 1 isoform 1 [Macaca mulatta]
gi|410225338|gb|JAA09888.1| RAD51 homolog [Pan troglodytes]
gi|410262156|gb|JAA19044.1| RAD51 homolog [Pan troglodytes]
gi|410290586|gb|JAA23893.1| RAD51 homolog [Pan troglodytes]
gi|410329095|gb|JAA33494.1| RAD51 homolog [Pan troglodytes]
Length = 339
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 135/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 172
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + +++++ LL++DS AL
Sbjct: 173 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATAL 227
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 228 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 285
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 286 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 331 ADGVGDAKD 339
>gi|54696276|gb|AAV38510.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [synthetic
construct]
Length = 340
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 135/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDQGGGEGKAMYIDTEGTFRPERLL-- 172
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + +++++ LL++DS AL
Sbjct: 173 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATAL 227
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 228 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 285
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 286 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 331 ADGVGDAKD 339
>gi|160331524|ref|XP_001712469.1| rad51 [Hemiselmis andersenii]
gi|159765917|gb|ABW98144.1| rad51 [Hemiselmis andersenii]
Length = 328
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 120/258 (46%), Gaps = 30/258 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T + LD L GG+ G +TEL+G TGKTQ C +++ A L GG +G I++D
Sbjct: 91 LTTGSQELDKILRGGIETGSITELIGEYRTGKTQLCHNIAVSAQLSYDQGGGEGRAIFLD 150
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++++ A F K + ++ I + + ++ + E L + +++
Sbjct: 151 TEGTFRPERIVDI-AGRF------KLNSLDVLENIALTRAYNVDQQLEILNSVGSMMVKY 203
Query: 204 QVKLLVIDSMEALVP----GVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ +L++DS+ AL G E A QH L I + L + I +++TNQV
Sbjct: 204 KFAVLIVDSIIALYRAEFIGRGELSARQQH-LGRFIKQLQRLCDEFNIAVLITNQVVA-- 260
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
QV + ++D + A G AHA RL L+ + G R +
Sbjct: 261 ---------QVDGCNSFVQDPKK------ACGGNIIAHASQTRLFLKKQKGVNRGCTIHD 305
Query: 319 SPTSPPLAFSFTINPSGI 336
SP PP +F+I SGI
Sbjct: 306 SPNLPPATCTFSITSSGI 323
>gi|60829742|gb|AAX36891.1| RAD51-like [synthetic construct]
gi|61369103|gb|AAX43285.1| RAD51-like [synthetic construct]
Length = 340
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 135/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 172
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + +++++ LL++DS AL
Sbjct: 173 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATAL 227
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 228 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 285
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 286 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 331 ADGVGDAKD 339
>gi|282165652|ref|YP_003358037.1| DNA repair and recombination protein RadA [Methanocella paludicola
SANAE]
gi|282157966|dbj|BAI63054.1| DNA repair and recombination protein RadA [Methanocella paludicola
SANAE]
Length = 323
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 120/287 (41%), Gaps = 46/287 (16%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T + E+R G L T LD L GGV +TE G G+GKTQ +L+
Sbjct: 67 FETGDTVFERRKQV----GKLKTGSNALDELLGGGVETQSITEFYGEFGSGKTQVAHQLA 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM------GASSFPEIFHSK---GMAQEM 174
+ LP GGL G VI ID E+TF R+ +M G PE F A
Sbjct: 123 VKVQLPPEEGGLGGSVIMIDTENTFRPERIAQMVKGLKGGEDLDPEEFLKNIHVARAYNS 182
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPL 231
+IL+++ S E EK++ S VKL+++DS+ A + R A Q L
Sbjct: 183 NHQILLVESAS-----ELAEKMRDS--DRPVKLIIVDSLTAHFRSEYVGRGTLADRQQKL 235
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAV 290
+ H+ + + + IVVTNQV+ K D D TR HIV
Sbjct: 236 NKHMHDLMRFGDINNAAIVVTNQVQA--------------KPDAFFGDPTRPIGGHIV-- 279
Query: 291 LGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
H T RL L G+ R + SP P F++ G+
Sbjct: 280 -----GHTATFRLYLRKSKGEKRIARLVDSPNLPEGEAIFSVTTEGL 321
>gi|45384012|ref|NP_990504.1| DNA repair protein RAD51 homolog 1 [Gallus gallus]
gi|585770|sp|P37383.1|RAD51_CHICK RecName: Full=DNA repair protein RAD51 homolog 1
gi|299819|gb|AAB26354.1| homolog to S.cerevisiae [Gallus gallus]
Length = 339
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 133/311 (42%), Gaps = 46/311 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELLNIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + ++L ++E ++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMAE--------------SRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGI 336
F IN G+
Sbjct: 324 EAMFAINADGV 334
>gi|326919838|ref|XP_003206184.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Meleagris
gallopavo]
Length = 339
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 133/312 (42%), Gaps = 46/312 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELLNIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + ++L ++E ++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMAE--------------SRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGIS 337
F IN G+
Sbjct: 324 EAMFAINADGVG 335
>gi|378755179|gb|EHY65206.1| DNA repair protein [Nematocida sp. 1 ERTm2]
Length = 338
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 124/287 (43%), Gaps = 37/287 (12%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
FQTA ++ ++R + + T LD L GG+ G +TEL G TGKTQ C L+
Sbjct: 84 FQTADIIHQKRLQMKMI----TTGSSELDKLLGGGIETGSITELFGEFRTGKTQICHMLA 139
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GG +G IYID ESTF + R+IE+ + ++ ++ V +
Sbjct: 140 VTCQLPTEMGGCNGKAIYIDTESTFRAERLIEIAKRYELD-------PTDVLSKVCVARA 192
Query: 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLIT 239
++ E ++ + + +LL++DS+ A G E A H LS ++ +
Sbjct: 193 YNVDHQLELVKMAGGLMASGEYRLLIVDSIIANYRTDFSGRGELSARQMH-LSTYLRSLM 251
Query: 240 SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAV 299
LA+ + +V+TNQV + ++ +K G AHA
Sbjct: 252 QLADEYNVAVVITNQVVATVDGAAAMFGGDTKK----------------PTGGHVLAHAS 295
Query: 300 TIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTE 345
RL L G R V SP+ P +F I GI+ DG E
Sbjct: 296 ATRLYLRKGRGDLRICKVYDSPSLPESEATFRIINEGIA----DGDE 338
>gi|391345455|ref|XP_003747001.1| PREDICTED: DNA repair protein RAD51 homolog B-like [Metaseiulus
occidentalis]
Length = 343
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 138/312 (44%), Gaps = 33/312 (10%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T+ +L+ + + ++ + L +++V F +A + +QR+ ++ T LD
Sbjct: 60 TKKQLLAIKGISEAKADKLMNLAAKLVPMGFTSATEIHKQRSEIIYI----TTGSAELDK 115
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+ G VTEL G TGKTQ C +L++ LP G +G +YID E F R+
Sbjct: 116 LLGGGIETGSVTELFGEFRTGKTQLCHQLAVTCQLPIDNNGAEGKALYIDTEGEFRPERL 175
Query: 154 IEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM 213
+ + E + +G +++ + + + T+ L + + +N+ LL++DS
Sbjct: 176 L-----AVAERYGLEG--EQVLDNVSCAKAYNTDHQTQLLMEAGALMSENRYALLIVDSA 228
Query: 214 EALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQV 270
AL + R + Q ++ + ++ LA+ + +V+TNQV Q S
Sbjct: 229 TALYRSDYSGRSELSARQMHMAKFLRMLGRLADEFGVAVVITNQVMAQVDGAS------- 281
Query: 271 QKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSF 329
+ +D R V G AHA T RL L+ G R + SP P F
Sbjct: 282 -----LFQDPRR------PVGGNIMAHASTTRLYLKKGRGDNRVCKIYDSPCLPESEAQF 330
Query: 330 TINPSGISLLTD 341
I+P GI D
Sbjct: 331 AISPRGIEDAKD 342
>gi|310752305|gb|ADP09466.1| RadA [uncultured marine crenarchaeote E48-1C]
Length = 334
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 115/264 (43%), Gaps = 32/264 (12%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GG+ ++E G G+GK+Q C +L + LP GGLDG +Y+D
Sbjct: 90 LTTGSKVLDQLLGGGLETQTISEFYGQYGSGKSQICHQLCVNVQLPTEQGGLDGAALYVD 149
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E+TF + R+++M H ++ A I+ + + L+ + +N
Sbjct: 150 TENTFRTERIVQMSR-------HLGLEPEQTAKNIIYAEAYTSDHQMFLLDNADEVVKEN 202
Query: 204 QVKLLVIDSMEALVPGVH---EQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQ 258
VKL+V+DS+ + + E AP Q L+ H+ + LA VVTNQV +P
Sbjct: 203 NVKLIVVDSLTSHFRSEYIGREMLAPRQQKLNKHMHKLIRLARAFNTVAVVTNQVMSKPD 262
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEK 318
+YP H+VA H +H T L ++ R +
Sbjct: 263 VFFGDGVYPIG---------------GHVVA----HTSHTRTY-LRRASRGPVRIARLVS 302
Query: 319 SPTSPPLAFSFTINPSGISLLTDD 342
SP P F + +GI +++D
Sbjct: 303 SPYLPEGEEIFKVTENGIEDVSED 326
>gi|396482153|ref|XP_003841408.1| similar to meiotic recombination protein dmc1 [Leptosphaeria
maculans JN3]
gi|312217982|emb|CBX97929.1| similar to meiotic recombination protein dmc1 [Leptosphaeria
maculans JN3]
Length = 339
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 134/311 (43%), Gaps = 42/311 (13%)
Query: 36 LELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEHLGGHLPTRLKGL 91
L++ ++++ +V+ AL C P FQTA L + R + T K L
Sbjct: 57 LKIKGFSEIKVDKVKDALGK-----CLPSGGGFQTAQELGQHRKRVIRI----STGSKAL 107
Query: 92 DAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSR 151
DA L GG ++E+ G GKTQ +S++A LP GG DG V YID E TF
Sbjct: 108 DAVLGGGFQTMSISEVFGEFRCGKTQLSHTMSVIAQLPKDMGGADGKVAYIDTEGTFRPE 167
Query: 152 RMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT-ESLEKIKVSLLQNQVKLLVI 210
R+ ++ A F G+ + A + SE E L K+ + N+ +LL+I
Sbjct: 168 RIAQI-AERF-------GVDPDAAQDNITYARAVNSEHQMELLNKVAEFFVGNEYRLLII 219
Query: 211 DSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
DS+ AL + R Q L+ +S +T +AE + +++TNQV+ +
Sbjct: 220 DSIMALFRVDYTGRGELNERQQKLNQFLSKLTHVAEEFNVAVLLTNQVQSDPGASALFAG 279
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLA 326
+K V G AHA R++L G +R ++ SP P
Sbjct: 280 ADGRK----------------PVGGHILAHASATRILLRKGRGEERVAKIQDSPDMPEKE 323
Query: 327 FSFTINPSGIS 337
++ I GI+
Sbjct: 324 ATYIITNGGIN 334
>gi|327280164|ref|XP_003224823.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Anolis
carolinensis]
Length = 339
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 134/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELLNIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 115 GGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 172
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + + +++ LL++DS AL
Sbjct: 173 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMTESRYALLIVDSATAL 227
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 228 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 285
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 286 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 331 ADGVGDAKD 339
>gi|18181991|dbj|BAB83903.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 116/262 (44%), Gaps = 41/262 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GG+ +TEL G G+GKTQ C +LS+ LP GGL+G +YID
Sbjct: 86 ITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYID 145
Query: 144 VESTFTSRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
E TF R+ +M G P+ E+ I ++ + ++K+ +
Sbjct: 146 TEGTFRWERIEQMARGVGLDPD---------EVMKNIYWIRAINSHHQIAIVDKLFTMVK 196
Query: 202 QNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV-- 255
+ +KL+V+DS+ A PG E A Q L+ H+ + LA+ + +V+TNQV
Sbjct: 197 NDNIKLVVVDSVTSHFRAEFPG-RENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMA 255
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
RP D D T+ AV G HA +R+ L+ G +R
Sbjct: 256 RP----------------DVFYGDPTQ------AVGGHVLGHAPGVRVYLKKGRGNKRIA 293
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
V +P P F I GI
Sbjct: 294 RVVDAPHLPEGETVFAITEWGI 315
>gi|320101396|ref|YP_004176988.1| DNA repair and recombination protein RadA [Desulfurococcus mucosus
DSM 2162]
gi|319753748|gb|ADV65506.1| DNA repair and recombination protein RadA [Desulfurococcus mucosus
DSM 2162]
Length = 329
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 124/281 (44%), Gaps = 43/281 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA + ++R + T + LD L GGV +TE G G+GKTQ C +LS
Sbjct: 78 FKTAREVKQERLNIRKI----TTGSRSLDELLGGGVETKTITEFYGEYGSGKTQLCHQLS 133
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
+ LP GGL+G +YID E TF R+ M + G+ ++ I ++
Sbjct: 134 VNVQLPLEKGGLEGRAVYIDTEGTFRWERIEAMA--------RALGLDPDKVMDNIYYMR 185
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLI 238
+ ++++ + +N VKL+V+DS+ A PG + A Q L+ H+ +
Sbjct: 186 AYNSDHQISIVDELFTFIPKNNVKLVVVDSVTSHFRAEYPG-RDHLAERQQKLNSHLHQL 244
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
LAE + +VVTNQV RP D D T +AV G A
Sbjct: 245 VRLAEAYNVAVVVTNQVMARP----------------DIFYGDPT------IAVGGHVLA 282
Query: 297 HAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
H +R+ L ++K +R V +P P F I GI
Sbjct: 283 HTPGVRVQLKKSKGNKRIARVVDAPHLPEGEAVFVILEEGI 323
>gi|14600463|ref|NP_146978.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1]
gi|334350817|sp|P0CW92.1|RADA_AERPE RecName: Full=DNA repair and recombination protein RadA
gi|5103509|dbj|BAA79030.1| DNA repair and recombination protein RadA [Aeropyrum pernix K1]
Length = 319
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 116/262 (44%), Gaps = 41/262 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GG+ +TEL G G+GKTQ C +LS+ LP GGL+G +Y+D
Sbjct: 86 ITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYVD 145
Query: 144 VESTFTSRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
E TF R+ +M G P+ E+ I ++ + ++K+ +
Sbjct: 146 TEGTFRWERIEQMARGVGLDPD---------EVMKNIYWIRAINSHHQIAIVDKLFTMVK 196
Query: 202 QNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV-- 255
+ +KL+V+DS+ A PG E A Q L+ H+ + LA+ + +V+TNQV
Sbjct: 197 NDNIKLVVVDSVTSHFRAEFPG-RENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMA 255
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
RP D D T+ AV G HA +R+ L+ G +R
Sbjct: 256 RP----------------DVFYGDPTQ------AVGGHVLGHAPGVRVYLKKSRGNKRIA 293
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
V +P P F I GI
Sbjct: 294 RVVDAPHLPEGETVFAITEWGI 315
>gi|218884526|ref|YP_002428908.1| DNA repair and recombination protein RadA [Desulfurococcus
kamchatkensis 1221n]
gi|254764424|sp|B8D610.1|RADA_DESK1 RecName: Full=DNA repair and recombination protein RadA
gi|218766142|gb|ACL11541.1| DNA repair and recombination protein radA [Desulfurococcus
kamchatkensis 1221n]
Length = 328
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 123/281 (43%), Gaps = 43/281 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA + ++R G + T K LD L GGV +TE G G+GKTQ C +LS
Sbjct: 77 FKTAREVKQERLNI----GKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLS 132
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
+ L GGL+G +YID E TF R+ M + G+ ++ I ++
Sbjct: 133 VNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMA--------RALGLDPDKVMDNIYYMR 184
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLI 238
+ ++++ + +N V+L+++DS+ A PG E A Q L+ H+ +
Sbjct: 185 AYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPG-REHLAERQQKLNSHLHQL 243
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
LAE + +VVTNQV RP D D T AV G A
Sbjct: 244 MRLAEAYNVAVVVTNQVMARP----------------DVFYGDPT------TAVGGHVLA 281
Query: 297 HAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
H +R+ L ++K +R V +P P F I GI
Sbjct: 282 HTPGVRIQLRKSKGNKRIARVVDAPHLPEGEVVFVITEEGI 322
>gi|387597245|gb|EIJ94865.1| DNA repair protein RAD51 [Nematocida parisii ERTm1]
Length = 341
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 125/290 (43%), Gaps = 43/290 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
FQTA ++ ++R + + T LD L GG+ G +TEL G TGKTQ C L+
Sbjct: 87 FQTAEVVHQKRLQMKMI----TTGSSELDKLLGGGIETGSITELFGEFRTGKTQLCHMLA 142
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF---PEIFHSKGMAQEMAGRILV 180
+ LP GG +G +YID E+TF S R+IE+ A + P + S + V
Sbjct: 143 VTCQLPTELGGCNGKAVYIDTEATFRSERLIEI-AKRYQLDPNVVLSN---------VCV 192
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHIS 236
+ ++ E +++ + + +L ++DS+ A G E A H L ++
Sbjct: 193 ARAYNVDHQIELVKQAGSLMASGEYRLCIVDSIIAHYRTDFSGRGELSARQMH-LGVYLR 251
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+ LA+ + IV+TNQV Q + ++ +K G A
Sbjct: 252 SLMQLADEYNVAIVITNQVVAQVDGAASMFGGDTKK----------------PTGGHVLA 295
Query: 297 HAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTE 345
HA RL L G R V SP+ P +F I GI+ DG E
Sbjct: 296 HASATRLYLRKGRGDLRICKVYDSPSLPESEATFRIIKEGIT----DGEE 341
>gi|304315504|ref|YP_003850651.1| DNA repair and recombination protein RadA [Methanothermobacter
marburgensis str. Marburg]
gi|302588963|gb|ADL59338.1| DNA repair and recombination protein RadA [Methanothermobacter
marburgensis str. Marburg]
Length = 311
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 46/283 (16%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA +ME+R G + T K LD + GG+ +TE+ G G+GK+Q +L+
Sbjct: 63 FETAFDVMERRKDV----GRITTGSKALDELIGGGIETQAITEVFGEFGSGKSQLSHELA 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF----PEIFHSKGMAQEMAGRIL 179
+ LP GGLD ++ID E+TF R IE A++F E+ + +A+
Sbjct: 119 VTVQLPEERGGLDAEAVFIDTENTFRPER-IEQIANAFELDLEEVLNKIHIARAFNSSHQ 177
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHIS 236
+L ++E + + I +L+++DS+ A + R A Q L+ H+
Sbjct: 178 ILMAEKVNELIQEGKNI---------RLVIVDSLTAHFRAEYVGREALATRQQKLNQHLH 228
Query: 237 LITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
+ ++A + VTNQV RP + + S A+ G
Sbjct: 229 TLQNIANTYNAAVFVTNQVQARPDAF----------------------FGSPTKAIGGHV 266
Query: 295 WAHAVTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HA T RL L+ +G+R + SP P F I +GI
Sbjct: 267 LGHAATYRLWLKKGLAGKRIARLVDSPHLPEGECVFKITEAGI 309
>gi|307596612|ref|YP_003902929.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa
DSM 14429]
gi|307551813|gb|ADN51878.1| DNA repair and recombination protein RadA [Vulcanisaeta distributa
DSM 14429]
Length = 388
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 18/224 (8%)
Query: 25 TTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHL 84
TA+D + EL ++L E + A I PF TA L E+R +
Sbjct: 102 NTARDVAFASVKELAEILGSEDRAKQIIAAAQKLIGLTPFITAYELYEKRRGIRRI---- 157
Query: 85 PTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144
T +K LD L GG+ +TELVG G+GKTQ C +LS++ LP GGL +Y+D
Sbjct: 158 STGVKSLDELLGGGIETKAITELVGEFGSGKTQLCHQLSVMVQLPEDKGGLKAKALYVDT 217
Query: 145 ESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E+TF R+++M +G+ QE IL + + +E+ K + +
Sbjct: 218 ENTFRPERIMQMA--------KYRGLDPQEALKNILYARAYNSDHQMMIIEESKKIIEKE 269
Query: 204 QVKLLVIDSMEA----LVPGVHEQRAPGQHPLSWHISLITSLAE 243
+ L+VIDS+ A PG E A Q L+ HI+ + +A+
Sbjct: 270 NIGLIVIDSLVAHFRSEYPG-RENLAERQQKLNHHIAQLLRIAD 312
>gi|18181987|dbj|BAB83901.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 116/262 (44%), Gaps = 41/262 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GG+ +TEL G G+GKTQ C +LS+ LP GGL+G +YID
Sbjct: 86 ITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYID 145
Query: 144 VESTFTSRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
E TF R+ +M G P+ E+ I ++ + ++K+ +
Sbjct: 146 TEGTFRWERIEQMARGVGLDPD---------EVMKNIYWIRAINSHHQIAIVDKLFTMVK 196
Query: 202 QNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV-- 255
+ ++L+V+DS+ A PG E A Q L+ H+ + LA+ + +V+TNQV
Sbjct: 197 NDNIRLVVVDSVTSHFRAEFPG-RENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMA 255
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
RP D D T+ AV G HA +R+ L+ G +R
Sbjct: 256 RP----------------DVFYGDPTQ------AVGGHVLGHAPGVRVYLKKSRGNKRIA 293
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
V +P P F I GI
Sbjct: 294 RVVDAPHLPEGETVFAITEWGI 315
>gi|340345410|ref|ZP_08668542.1| DNA repair and recombination protein RadA [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520551|gb|EGP94274.1| DNA repair and recombination protein RadA [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 387
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 115/263 (43%), Gaps = 30/263 (11%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T LD GGV +TE+ G G+GKTQF L+++ P GGLDGGV+Y
Sbjct: 86 GKITTGTNCLDTLFDGGVETQALTEVYGEFGSGKTQFAHTLAVMVQKPKTEGGLDGGVLY 145
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
ID E+TF R++ + + + +++ RI+V + + + T LE+ +
Sbjct: 146 IDTENTFRPERIVSIAQAHEMD-------PEKVLDRIIVARAYNSAHQTLILEEAGPIIE 198
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+N ++L+V DS L + R + Q L+ + +++ +AE + TNQV
Sbjct: 199 ENNIRLIVADSAVGLFRAEYLGRGTLSNRQQKLNHFVHMLSRIAETYNCAAIATNQV--- 255
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEK 318
+ D D TR + G AH T R+ + +R +
Sbjct: 256 -----------MASPDVFFGDPTR------PIGGNVVAHTSTYRIYFKKSGKKRIARMVD 298
Query: 319 SPTSPPLAFSFTINPSGISLLTD 341
SP P F + +G+ L D
Sbjct: 299 SPHHPEEEVIFALGEAGVMDLED 321
>gi|330915672|ref|XP_003297116.1| hypothetical protein PTT_07429 [Pyrenophora teres f. teres 0-1]
gi|311330355|gb|EFQ94774.1| hypothetical protein PTT_07429 [Pyrenophora teres f. teres 0-1]
Length = 338
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 134/311 (43%), Gaps = 42/311 (13%)
Query: 36 LELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEHLGGHLPTRLKGL 91
L++ ++++ +V+ A+ C P FQTA L +QR + T K L
Sbjct: 56 LKIKGFSEIKVDKVKDAIGK-----CQPSGGGFQTAHELGQQRKRVIKI----STGSKAL 106
Query: 92 DAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSR 151
DA L GG ++E+ G GKTQ +S++ LP GG +G V YID E TF
Sbjct: 107 DAVLGGGFQTMSISEVFGEFRCGKTQLSHTMSVITQLPKDMGGAEGKVAYIDTEGTFRPE 166
Query: 152 RMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT-ESLEKIKVSLLQNQVKLLVI 210
R+ ++ A F G+ E A + SE E L K+ + N+ +LL+I
Sbjct: 167 RIAQI-AERF-------GVDPETAQDNITYARAVNSEHQMELLNKVAEFFVSNEYRLLII 218
Query: 211 DSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
DS+ AL + R Q L+ +S +T +AE + +++TNQV+ +
Sbjct: 219 DSIMALFRVDYTGRGELNERQQKLNQFLSKLTHVAEEFNVAVLLTNQVQSDPGASALFAG 278
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLA 326
+K V G AHA R++L G +R ++ SP P
Sbjct: 279 ADGRK----------------PVGGHILAHASATRILLRKGRGEERVAKIQDSPDMPEKE 322
Query: 327 FSFTINPSGIS 337
++ I GI+
Sbjct: 323 ATYIITNGGIN 333
>gi|289596168|ref|YP_003482864.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
T469]
gi|289533955|gb|ADD08302.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
T469]
Length = 227
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 24/170 (14%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
+D+ L GG G +TEL G AG+GKT CL ++ A HY VIYID E
Sbjct: 11 IDSLLNGGFERGCITELYGEAGSGKTNICLSTAINVAKEGHY------VIYIDTEGISME 64
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK-IKVSLLQNQVKLLV 209
R F G +++A RIL + S+ E +E+ I + +N + LL+
Sbjct: 65 R-------------FSQLGGNEDIAKRILFYKVYKFSQQAEIIERAINLVEKRNDIILLI 111
Query: 210 IDSMEALV---PGVHEQ-RAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
+DSM GV E A + L+W +S++ S+A I +++TNQV
Sbjct: 112 VDSMTEFYRAERGVEEDLSAKKRSSLAWQLSILNSIARKKNIAVIITNQV 161
>gi|115754819|ref|XP_790563.2| PREDICTED: DNA repair protein XRCC3-like [Strongylocentrotus
purpuratus]
Length = 355
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 147/307 (47%), Gaps = 39/307 (12%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQ-TALLL 70
P+ +A++ A N+ + + L L+ +L + + +V L VSE V TAL L
Sbjct: 8 PRILASLKKA-NLRSFESVLHLSPADLGRCTKLSSRDVSIILKAVSEEVYKIKNITALTL 66
Query: 71 MEQRAATEHLG-GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALP 129
+Q + HL T LD L GG+ +TE+ G + GKTQ CL+L L A LP
Sbjct: 67 FKQSHQEDRKEPTHLTTGCPILDEFLHGGILVKGITEIAGQSAAGKTQLCLQLCLTAQLP 126
Query: 130 AHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSK---GMAQEMA--GRILVLQPT 184
GGL GV+YI E F S+R+ ++ +S F+SK +A+++A I V
Sbjct: 127 VQQGGLSNGVVYICTEDVFPSKRLQQLISS-----FNSKIGPALAKQLAVGDHIYVEHAA 181
Query: 185 SLSEFTESLEK-IKVSLLQNQVKLLVIDSMEALVPGVHE-----QRAPGQHPLSWHISLI 238
+ LEK + + L + VKL V+DS+ A+ E +RA + H+ +
Sbjct: 182 EKDQLWHCLEKRLPLLLSRGMVKLAVVDSLAAIFRSEFELRDTIRRARELQRVGAHLHRL 241
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
+S +F+ + +V NQV ++ ++ L P + S ++ LG W++
Sbjct: 242 SS--QFN-VAVVCVNQV--TANMKASLDPTE---------------SEMMPALGLTWSNI 281
Query: 299 VTIRLVL 305
V +RL+L
Sbjct: 282 VKVRLML 288
>gi|405959794|gb|EKC25786.1| Leucine-zipper-like transcriptional regulator 1 [Crassostrea gigas]
Length = 1621
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 123/269 (45%), Gaps = 52/269 (19%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
+GLD L GGVP +TE G G GKTQ C+++++ +P+ +GGL G +YID E +F
Sbjct: 797 EGLDNMLGGGVPLCKITEFCGAPGVGKTQMCMQIAVDVQIPSQFGGLQGEAVYIDTEGSF 856
Query: 149 TSRRMIEMGASSFPEIFHSKGMAQ---EMAGRILVLQPTSLSEFTESLEKIK----VSLL 201
R++++ ++ + H MA+ G I V S F + ++ V LL
Sbjct: 857 IVERLVDIAKAT---VDHCNEMARLEGFKEGEITVESVLSGVHFYRCHDYVELLATVHLL 913
Query: 202 ------QNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLA--------EFSRI 247
++K++++DS+ H + LS L+T++A EF +I
Sbjct: 914 PEFIKKHPKIKVVLVDSV-----AFHFRHDFDD--LSLRTRLLTTMAQSFIKLATEF-KI 965
Query: 248 PIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA 307
IV+TNQ+ + P + S +V LG W HA TIR++L
Sbjct: 966 AIVLTNQMTTK------FSPGED--------------SRLVPALGESWGHASTIRVILYW 1005
Query: 308 KSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ +R+ + KSP+ + I G+
Sbjct: 1006 EGQKRWAWLYKSPSKKESRVPYQITMGGV 1034
>gi|307167464|gb|EFN61037.1| DNA repair protein RAD51-like protein 1 [Camponotus floridanus]
Length = 340
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 134/311 (43%), Gaps = 45/311 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+ + + ++ L S+IV F++A + + RA ++ T K LD L
Sbjct: 59 DLITIKGISEAKADKLLQEASKIVMMGFKSATEIHQTRANIVYV----TTGSKELDKLLG 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G +GK+Q C L++ LP GG +G +YID E+TF R++ +
Sbjct: 115 GGIETGSITEIFGEFRSGKSQLCHTLAVNCQLPICMGGAEGRCLYIDTENTFRPERLVAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+S + +++ + ++LV ++E + LL+
Sbjct: 175 AERYKISGSSVLDNVAYARAYNTDHQTQLLVQASAMMTE--------------ARYALLI 220
Query: 210 IDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS +L + R Q L+ + ++ LA+ I +V+TNQV Q + ++
Sbjct: 221 VDSATSLYRTDYSGRGELNARQIHLARFLRMLLRLADEHGIAVVITNQVVAQVDGAASMF 280
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AH+ T RL L G+ R + SP P
Sbjct: 281 GGDQKK----------------PIGGHILAHSSTTRLYLRKGRGETRICKIYDSPCLPES 324
Query: 326 AFSFTINPSGI 336
+F IN GI
Sbjct: 325 EATFAINADGI 335
>gi|91080301|ref|XP_974146.1| PREDICTED: similar to RAD51 homolog protein [Tribolium castaneum]
gi|270006417|gb|EFA02865.1| spindle A-like protein [Tribolium castaneum]
Length = 338
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 131/294 (44%), Gaps = 32/294 (10%)
Query: 47 SEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTE 106
++V LA ++ V F TA + +RA L T K LD L GG+ G +TE
Sbjct: 68 AKVNKLLAEAAKFVNMGFTTATDIHRRRANIIQL----TTGSKELDKLLGGGIETGSITE 123
Query: 107 LVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFH 166
+ G TGKTQ C L++ L GG +G +YID E TF R++ + E ++
Sbjct: 124 IFGEFRTGKTQICHTLAVTCQLSVESGGGEGKCLYIDTEGTFRPERLLPV-----AERYN 178
Query: 167 SKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR-- 224
G Q++ ++ + + TE L +++++ LL++DS +L + R
Sbjct: 179 MDG--QQVLDNVVFARAFNTDHQTELLVHAAAMMMESRYCLLIVDSATSLYRTDYSGRGE 236
Query: 225 -APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRY 283
+ Q+ L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 237 LSARQNHLARFLRMLLRLADEFGVAVVLTNQVVAQV-DGAAMFNADPKK----------- 284
Query: 284 YSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AH+ T RL L G+ R + SP P F I P GI
Sbjct: 285 -----PIGGNIMAHSSTTRLSLRKGRGEARVCKIYDSPCLPESEAIFAIRPDGI 333
>gi|444706842|gb|ELW48160.1| Protein CASC5 [Tupaia chinensis]
Length = 1640
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 138/316 (43%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 1360 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEI----IQITTGSKELDKLLQ 1415
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 1416 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 1475
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + ++L Q +++ +++++ LL+
Sbjct: 1476 AERYGLSGSDVLDNVAYARGFNTDHQTQLL-YQASAM-------------MVESRYALLI 1521
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 1522 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 1580
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 1581 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 1624
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 1625 EAMFAINADGVGDAKD 1640
>gi|178056768|ref|NP_001116653.1| DNA repair protein RAD51 homolog 1 [Sus scrofa]
gi|167600352|gb|ABZ89107.1| Rad51 [Sus scrofa]
gi|168085455|dbj|BAG09486.1| DNA repair protein RAD51 [Sus scrofa]
Length = 339
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 134/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 172
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + +++++ LL+IDS AL
Sbjct: 173 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIIDSATAL 227
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 228 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 285
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 286 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 331 ADGVGDAKD 339
>gi|254166621|ref|ZP_04873475.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
T469]
gi|254168908|ref|ZP_04875748.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
T469]
gi|197622172|gb|EDY34747.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
T469]
gi|197624231|gb|EDY36792.1| DNA repair and recombination protein RadB [Aciduliprofundum boonei
T469]
Length = 234
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 24/170 (14%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
+D+ L GG G +TEL G AG+GKT CL ++ A HY VIYID E
Sbjct: 18 IDSLLNGGFERGCITELYGEAGSGKTNICLSTAINVAKEGHY------VIYIDTEGISME 71
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK-IKVSLLQNQVKLLV 209
R F G +++A RIL + S+ E +E+ I + +N + LL+
Sbjct: 72 R-------------FSQLGGNEDIAKRILFYKVYKFSQQAEIIERAINLVEKRNDIILLI 118
Query: 210 IDSMEALV---PGVHEQ-RAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
+DSM GV E A + L+W +S++ S+A I +++TNQV
Sbjct: 119 VDSMTEFYRAERGVEEDLSAKKRSSLAWQLSILNSIARKKNIAVIITNQV 168
>gi|346470495|gb|AEO35092.1| hypothetical protein [Amblyomma maculatum]
Length = 337
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 135/305 (44%), Gaps = 32/305 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+ + + ++ LA +++V F TA + ++R+ + T K LD L
Sbjct: 57 QLLAIKGISEAKADKLLAEAAKLVPLGFTTATEIHQKRSDIVQI----TTGSKELDKLLG 112
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP + G +G +YID E TF R++
Sbjct: 113 GGIETGSITEMFGEFRTGKTQLCHMLAVTCQLPIEHSGGEGKCLYIDTEGTFRPERLL-- 170
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ + + G Q++ + + + T+ L + + + + LL++DS AL
Sbjct: 171 ---AVADKYGLSG--QDVLDNVAYARAYNSDHQTQLLIQASAMMAETRYALLIVDSATAL 225
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 226 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFSADPKK- 283
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F I
Sbjct: 284 ---------------PIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIT 328
Query: 333 PSGIS 337
P GIS
Sbjct: 329 PQGIS 333
>gi|325968380|ref|YP_004244572.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
768-28]
gi|323707583|gb|ADY01070.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
768-28]
Length = 358
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 18/225 (8%)
Query: 25 TTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHL 84
TA+D + EL +L E + A I PF TA L E+R +
Sbjct: 72 NTARDVAFASVKELADILGSEDRAKQIIAAAQKLIGLTPFITAYELYEKRRGIRRI---- 127
Query: 85 PTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144
T +K LD L GG+ +TELVG G+GKTQ C +LS++ LP GGL +Y+D
Sbjct: 128 STGVKALDELLGGGIETKAITELVGEFGSGKTQLCHQLSIIVQLPEDRGGLKAKALYVDT 187
Query: 145 ESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E+TF R++ +I +G+ QE IL + + +E+ K + +
Sbjct: 188 ENTFRPERIM--------QIAKYRGLDPQEALRNILYARAYNSDHQMMIIEESKKIIEKE 239
Query: 204 QVKLLVIDSMEA----LVPGVHEQRAPGQHPLSWHISLITSLAEF 244
+ L+VIDS+ A PG E A Q L+ HI+ + +A+
Sbjct: 240 NIGLIVIDSLVAHFRSEYPG-RENLAERQQKLNHHIAQLLRIADI 283
>gi|116245799|ref|XP_001230756.1| AGAP003791-PA [Anopheles gambiae str. PEST]
gi|116130977|gb|EAU77376.1| AGAP003791-PA [Anopheles gambiae str. PEST]
Length = 290
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 36/284 (12%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T + LD AL G+P G++TEL GP G+GKTQ CL+L++ +P GGL G +Y+D
Sbjct: 19 LVTFCRDLDLALGSGIPEGMITELCGPPGSGKTQLCLQLAVNVQIPQQLGGLQGRAVYLD 78
Query: 144 VESTFTSRRMIEMGASSFPE-----IFHSKGMAQEMAG--------RILVLQPTSLSEFT 190
F +R+ EM + + H + +AG IL T+ ++
Sbjct: 79 TNYGFFPQRVQEMAKACHNHCANIALLHKLNPEETLAGFSEATALDNILYSHVTNCTQIL 138
Query: 191 ESLEKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPI 249
E++ ++ L + +KL+V+DS+ L+ + + + ++L+ LA +
Sbjct: 139 EAIAVLQNRLYDGEKIKLIVLDSLSFLIRNTNTRSMKRVKRVHEILTLLHKLAHRFGCVV 198
Query: 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL---- 305
+VTN V + D +D +R IV LG H V R+ L
Sbjct: 199 IVTNDVTTRISD-----------VDGGGGERPD-VPQIVPALGGSLTHKVNQRIFLGRDE 246
Query: 306 ---EAKSG---QRFMNVEKSPTSPPLAFSFTINPSGISLLTDDG 343
+A+S ++EK P + +F I P+GI + +G
Sbjct: 247 SHFDAQSQAPPSYVASIEKGHFLPSVTVAFRIEPAGIRGVKREG 290
>gi|18181989|dbj|BAB83902.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 116/262 (44%), Gaps = 41/262 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GG+ +TEL G G+GKTQ C +LS+ LP GGL+G +YID
Sbjct: 86 ITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYID 145
Query: 144 VESTFTSRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
E TF R+ +M G P+ E+ I ++ + ++K+ +
Sbjct: 146 TEGTFRWERIEQMARGVGLDPD---------EVMKNIYWIRAINSHHQIAIVDKLFTMVK 196
Query: 202 QNQVKLLVIDSMEA----LVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV-- 255
+ +KL+V+DS+ + PG E A Q L+ H+ + LA+ + +V+TNQV
Sbjct: 197 NDNIKLVVVDSVTSHFRVEFPG-RENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMA 255
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
RP D D T+ AV G HA +R+ L+ G +R
Sbjct: 256 RP----------------DVFYGDPTQ------AVGGHVLGHAPGVRVYLKKSRGDKRIA 293
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
V +P P F I GI
Sbjct: 294 RVVDAPHLPEGETVFAITEWGI 315
>gi|429963383|gb|ELA42927.1| DNA repair protein RAD51 [Vittaforma corneae ATCC 50505]
Length = 331
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 107/258 (41%), Gaps = 41/258 (15%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGKTQ C +++ LP GG G IYID E TF S
Sbjct: 100 LDKLLHGGIESGSITEIFGEFRTGKTQLCHTIAVSCQLPVENGGGAGKCIYIDTEGTFRS 159
Query: 151 RRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
R+I + + I +++ + +L+ +SE N
Sbjct: 160 ERLIPIAERLGLNPDTVLENISYARAYNSDHQNNLLIHASAMMSE--------------N 205
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ +L++DS AL + R Q L+ + +T+LAE + +V+TNQV
Sbjct: 206 KYAVLIVDSATALYRTDYNGRGELGARQIHLARFLRTLTNLAETYGVAVVITNQVVATVD 265
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKS 319
+ ++ +K + G AHA T RL + K R + S
Sbjct: 266 GTTAMFNADPKK----------------PIGGNIIAHASTTRLYFRKGKGNTRICKIYDS 309
Query: 320 PTSPPLAFSFTINPSGIS 337
P P L F I SGI+
Sbjct: 310 PCLPELEAVFAITESGIA 327
>gi|15679382|ref|NP_276499.1| DNA repair and recombination protein RadA [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3914551|sp|O27436.1|RADA_METTH RecName: Full=DNA repair and recombination protein RadA
gi|2622493|gb|AAB85860.1| DNA repair protein RadA [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 311
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 124/283 (43%), Gaps = 46/283 (16%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA +ME+R G + T K LD + GG+ +TE+ G G+GK+Q +L+
Sbjct: 63 FETAFDVMERRKDV----GRITTGSKALDELIGGGIETQAITEVFGEFGSGKSQLSHELA 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF----PEIFHSKGMAQEMAGRIL 179
+ LP GGLD ++ID E+TF R IE A++F E+ + +A+
Sbjct: 119 VTVQLPEERGGLDAEAVFIDTENTFRPER-IEQIANAFELDLEEVLNKIHIARAFNSSHQ 177
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHIS 236
+L ++E + + I +L+++DS+ A + R A Q L+ H+
Sbjct: 178 ILMAEKVNELIQEGKNI---------RLVIVDSLTAHFRAEYVGREALATRQQKLNQHLH 228
Query: 237 LITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
+ ++A + VTNQV RP + + S A+ G
Sbjct: 229 TLQNIANTYNAAVFVTNQVQARPDAF----------------------FGSPTKAIGGHV 266
Query: 295 WAHAVTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HA T R+ L+ +G+R + SP P F I +GI
Sbjct: 267 LGHAATYRIWLKKGLAGKRIARLVDSPHLPEGECVFKITTAGI 309
>gi|326931485|ref|XP_003211859.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Meleagris
gallopavo]
Length = 355
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 131/310 (42%), Gaps = 61/310 (19%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+E+ EH G + T LD L GGV +TE+ G G GKTQ C++L++
Sbjct: 64 TALELLEE----EHAQGFIITFCSALDNILGGGVQLTKITEICGAPGVGKTQLCMQLAVD 119
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
+P +GG+ G ++ID E +F R ++ + + H + +A+
Sbjct: 120 VQIPECFGGVAGEAVFIDTEGSFMVDRAADIATAC---VQHCQLIAE------------- 163
Query: 186 LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS-LAEF 244
++ +K L S+E+++ ++ R L + L+ L+E
Sbjct: 164 ------------AHQEEDHLKALETFSLESILSHIYYFRCRDYIELLAQVYLLPDFLSEH 211
Query: 245 SRIPIVVTNQVR-PQSHD------ESCLYPFQVQKMDRILKDR-----------TRY--- 283
S++ +VV + + P HD + L Q++ I D TR+
Sbjct: 212 SKVRLVVIDGIAFPFRHDFEDLSLRTRLLNGLAQQLIIIANDHKSAVVLTNQMTTRFGQN 271
Query: 284 YSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLL---- 339
S +V LG W HA T+RL+ + QR + KSP+ + I P G +
Sbjct: 272 QSMLVPALGESWGHAATVRLIFHWDNTQRLATLYKSPSQKESTIPYNITPQGFRDVQPPP 331
Query: 340 ---TDDGTEM 346
+GTEM
Sbjct: 332 VTQNAEGTEM 341
>gi|348537158|ref|XP_003456062.1| PREDICTED: DNA repair protein RAD51 homolog B [Oreochromis
niloticus]
gi|63852088|dbj|BAD98461.1| RecA homolog Rad51 [Oreochromis niloticus]
Length = 336
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 132/309 (42%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++RA + T K LD L
Sbjct: 56 ELLNIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRAEIIQI----STGSKELDKLLQ 111
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 112 GGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKAMYIDTEGTFRPERLL-- 169
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + + +++ LL++DS AL
Sbjct: 170 ---AVAERYGLVG--SDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIVDSATAL 224
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 225 YRTDYSGRGELSARQGHLGRFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFSADPKK- 282
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 283 ---------------PIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 327
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 328 ADGVGDAKD 336
>gi|347800669|ref|NP_998371.2| DNA repair protein RAD51 homolog 1 [Danio rerio]
Length = 340
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 132/309 (42%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++RA + T K LD L
Sbjct: 60 ELLNIKGISEAKADKILTEAAKMVPMGFTTATEFHQRRAEIIQI----STGSKELDKLLQ 115
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 116 GGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKAMYIDTEGTFRPERLL-- 173
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + + +++ LL++DS AL
Sbjct: 174 ---AVAERYGLVG--SDVLDNVAYARAFNTDHQTQLLYQASAMMTESRYALLIVDSATAL 228
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 229 YRTDYSGRGELSARQGHLGRFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFSADPKK- 286
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 287 ---------------PIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 331
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 332 ADGVGDAKD 340
>gi|114051383|ref|NP_001039644.1| DNA repair protein RAD51 homolog 1 [Bos taurus]
gi|301754892|ref|XP_002913265.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Ailuropoda
melanoleuca]
gi|410961504|ref|XP_003987322.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 1 [Felis
catus]
gi|426232982|ref|XP_004010496.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 1 [Ovis
aries]
gi|116255982|sp|Q2KJ94.1|RAD51_BOVIN RecName: Full=DNA repair protein RAD51 homolog 1
gi|86821651|gb|AAI05459.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Bos taurus]
gi|296483320|tpg|DAA25435.1| TPA: DNA repair protein RAD51 homolog 1 [Bos taurus]
gi|440911678|gb|ELR61319.1| DNA repair protein RAD51-like protein 1 [Bos grunniens mutus]
Length = 339
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>gi|82617212|emb|CAI64118.1| DNA repair and recombination protein [uncultured archaeon]
gi|268322944|emb|CBH36532.1| DNA repair and recombination protein radA [uncultured archaeon]
Length = 315
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 125/284 (44%), Gaps = 44/284 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R H G L T K LD + GG+ +TE G G+GKTQ +L+
Sbjct: 63 FETGDKILERR----HNIGKLTTGSKSLDDLIGGGLETQALTEFYGEFGSGKTQIAHQLA 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM--GAS-SFPEIFHSKGMAQEMAGR--- 177
+ LP GGLDG I ID E+TF R+ +M GA + +I + +A+
Sbjct: 119 VNVQLPPEKGGLDGSAIIIDTENTFRPDRIKDMSEGAELDYNDILKNIHVARSYNSNHQI 178
Query: 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWH 234
+LV + +L+E ++ EK V+L++IDS A + R A Q ++ H
Sbjct: 179 LLVEKAGALAEELKATEK--------PVRLMIIDSATAQFRSEYVGRGTLADRQQKINRH 230
Query: 235 ISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAVLGF 293
+ + + +++TNQV + K D D TR HIV
Sbjct: 231 LHDALKFGDLNNAVVMITNQV--------------MAKPDAFFGDPTRPIGGHIV----- 271
Query: 294 HWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
H T RL L G+ R + SP P F+++ GI
Sbjct: 272 --GHTATFRLYLRKSKGEKRVAKLVDSPNMPEAEAVFSVSSIGI 313
>gi|38571810|gb|AAH62849.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Danio rerio]
Length = 338
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 132/309 (42%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++RA + T K LD L
Sbjct: 58 ELLNIKGISEAKADKILTEAAKMVPMGFTTATEFHQRRAEIIQI----STGSKELDKLLQ 113
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 114 GGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKAMYIDTEGTFRPERLL-- 171
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + + +++ LL++DS AL
Sbjct: 172 ---AVAERYGLVG--SDVLDNVAYARAFNTDHQTQLLYQASAMMTESRYALLIVDSATAL 226
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 227 YRTDYSGRGELSARQGHLGRFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFSADPKK- 284
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 285 ---------------PIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 329
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 330 ADGVGDAKD 338
>gi|149692472|ref|XP_001503572.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 1 [Equus
caballus]
Length = 339
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>gi|301112304|ref|XP_002905231.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262095561|gb|EEY53613.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 425
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 156/351 (44%), Gaps = 41/351 (11%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M ++++ + + +F + ITT + L ++ +D+ + EV + VS +
Sbjct: 1 MLQRVLARENVDERRRALFRSGGITTHRQLLQRPLWDVAHAVDMSVREVEQLMTKVSLRL 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P ++A L + A L T L +D AL GG+ ++E VG AG GK+Q +
Sbjct: 61 APASRSAFDLFLESANHPTF---LRTGLPSIDQALNGGLHCRALSEFVGTAGIGKSQVAM 117
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAG---- 176
L+++ A+ + GV++ DVE F+++R++++ + + E+A
Sbjct: 118 TLAVVCAMDYP----NNGVVFFDVEHNFSAKRLLQITIARIKVTQAGQEDINELAAAVIK 173
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPG----VHEQRAPGQHPLS 232
RI V++ S++ F ++++ ++ + KLL+ID + L H QR QH +
Sbjct: 174 RIRVVKVNSIAAFLSKFKEMEDAMHSLKAKLLIIDCVTTLFLKADDLTHSQR---QHEML 230
Query: 233 WHISLITSLAEFSRIPIVVTNQVRPQSHD-ESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
+ A+ + +VVTN R + D E LY L
Sbjct: 231 RMARDLKLFADTYQAFVVVTN--RATTVDGEDGLYT--------------------KPQL 268
Query: 292 GFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDD 342
G +WAH VT R ++E S M + KS + + FT+ G+ + +D
Sbjct: 269 GDNWAHCVTTRFIMERHSLYHAMTIVKSSVAGYVVQPFTVKEGGVEPVEED 319
>gi|6755276|ref|NP_035364.1| DNA repair protein RAD51 homolog 1 [Mus musculus]
gi|585772|sp|Q08297.1|RAD51_MOUSE RecName: Full=DNA repair protein RAD51 homolog 1; AltName:
Full=RAD51 homolog A
gi|397831|dbj|BAA02961.1| MmRad51 [Mus musculus]
gi|407349|dbj|BAA02718.1| Rad51 protein [Mus musculus]
gi|12847236|dbj|BAB27489.1| unnamed protein product [Mus musculus]
gi|20073272|gb|AAH27384.1| RAD51 homolog (S. cerevisiae) [Mus musculus]
gi|26345412|dbj|BAC36357.1| unnamed protein product [Mus musculus]
gi|74185375|dbj|BAE30162.1| unnamed protein product [Mus musculus]
gi|74185412|dbj|BAE30179.1| unnamed protein product [Mus musculus]
gi|148695989|gb|EDL27936.1| RAD51 homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|1093114|prf||2102359A RAD51-like protein
Length = 339
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>gi|126723348|ref|NP_001075493.1| DNA repair protein RAD51 homolog 1 [Oryctolagus cuniculus]
gi|6225914|sp|O77507.1|RAD51_RABIT RecName: Full=DNA repair protein RAD51 homolog 1
gi|3387769|gb|AAC28561.1| Rad51 [Oryctolagus cuniculus]
Length = 339
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVTVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>gi|313217208|emb|CBY38360.1| unnamed protein product [Oikopleura dioica]
Length = 338
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 113/258 (43%), Gaps = 30/258 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K D L GG+ G +TEL G TGK+Q C+ L++ A LP GG +G +YID
Sbjct: 102 ITTGSKEFDRMLAGGIETGSITELFGEFRTGKSQLCMTLAVTAQLPVDLGGGEGKALYID 161
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + E + G +++ + V + S L + ++
Sbjct: 162 TEGTFRPERLL-----AISERYGLSG--KDVLDNVAVARAFSTDHQMTMLHTCAAMMTES 214
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ ++++DS+ AL + R A Q L + + LA+ + IV+TNQV
Sbjct: 215 RYSIMIVDSIMALYRSDYSGRGELAARQMHLGKFLRGLLKLADTFGVAIVITNQVTA--- 271
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKS 319
V M ++ D V G AHA R+ ++ G RF + S
Sbjct: 272 --------NVDGM--MMGDNQ------TPVGGNILAHASCTRIKMKKGRGNNRFARIYDS 315
Query: 320 PTSPPLAFSFTINPSGIS 337
P P +F I+P GI+
Sbjct: 316 PCLPDEQITFAISPGGIT 333
>gi|390355303|ref|XP_003728518.1| PREDICTED: DNA repair protein XRCC3-like [Strongylocentrotus
purpuratus]
Length = 355
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 33/304 (10%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQ-TALLL 70
P+ +A++ A N+ + + L L+ +L + + +V L VSE V TAL L
Sbjct: 8 PRILASLKKA-NLRSFESVLHLSPADLGRCTKLSSRDVSIILKAVSEEVYKIKNITALTL 66
Query: 71 MEQRAATEHLG-GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALP 129
+Q + HL T LD L GG+ +TE+ G + GKTQ CL+L L A LP
Sbjct: 67 FKQSHQEDRKEPTHLTTGCPILDEFLHGGILVKGITEIAGQSAAGKTQLCLQLCLTAQLP 126
Query: 130 AHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA--GRILVLQPTSLS 187
GGL GV+YI E F S+R+ ++ +S I +A+++A I V
Sbjct: 127 VQQGGLANGVVYICTEDVFPSKRLQQLISSFNRRI--GPALAKQLAVGDHIYVEHAAEKD 184
Query: 188 EFTESLEK-IKVSLLQNQVKLLVIDSMEALVPGVHE-----QRAPGQHPLSWHISLITSL 241
+ LEK + + L + VKL V+DS+ A+ E +RA + H+ ++S
Sbjct: 185 QLWHCLEKRLPLLLSRGMVKLAVVDSLAAIFRSEFELRDTIRRARELQRVGAHLHRLSS- 243
Query: 242 AEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTI 301
+F+ + +V NQV ++ E+ L P + S ++ LG W++ V +
Sbjct: 244 -QFN-VAVVCVNQV--TANMEASLDPTE---------------SEMMPALGLTWSNIVKV 284
Query: 302 RLVL 305
RL+L
Sbjct: 285 RLML 288
>gi|427789927|gb|JAA60415.1| Putative meiotic recombination protein dmc1 [Rhipicephalus
pulchellus]
Length = 337
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 136/312 (43%), Gaps = 38/312 (12%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+ + + ++ LA +++V F TA + ++R+ + T K LD L
Sbjct: 57 QLLTIKGISEAKADKLLAEAAKMVPLGFTTATEIHQKRSDIVQI----TTGSKELDKLLG 112
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP + G +G +YID E TF R++ +
Sbjct: 113 GGIETGSITEVFGEFRTGKTQLCHMLAVTCQLPIEHSGGEGKCLYIDTEGTFRPERLLAV 172
Query: 157 GAS---SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM 213
S P++ + A+ + T+ L + + + + LL++DS
Sbjct: 173 ADKYGLSGPDVLDNVAYARAY----------NSDHQTQLLIQASAMMAETRYALLIVDSA 222
Query: 214 EALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQV 270
AL + R + Q L+ + ++ LA+ + +++TNQV Q D + ++
Sbjct: 223 TALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVLITNQVVAQV-DGAAMFSADP 281
Query: 271 QKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSF 329
+K + G AHA T RL L G+ R + SP P F
Sbjct: 282 KK----------------PIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMF 325
Query: 330 TINPSGISLLTD 341
I P GIS + D
Sbjct: 326 AITPQGISDVKD 337
>gi|410927852|ref|XP_003977354.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Takifugu
rubripes]
Length = 340
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 132/309 (42%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++RA + T K LD L
Sbjct: 60 ELLNIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRAEIIQI----STGSKELDKLLQ 115
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 116 GGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKAMYIDTEGTFRPERLL-- 173
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + + +++ LL++DS AL
Sbjct: 174 ---AVAERYGLVG--SDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIVDSATAL 228
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 229 YRTDYSGRGELSARQGHLGRFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFSADPKK- 286
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 287 ---------------PIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 331
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 332 ADGVGDAKD 340
>gi|429216262|ref|YP_007174252.1| DNA repair and recombination protein RadA [Caldisphaera lagunensis
DSM 15908]
gi|429132791|gb|AFZ69803.1| DNA repair and recombination protein RadA [Caldisphaera lagunensis
DSM 15908]
Length = 327
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 138/318 (43%), Gaps = 47/318 (14%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGH-LPTRLKGLD 92
T E+ ++ + L + ++ E + F+TAL L ++R L H + T K LD
Sbjct: 47 TPQEIAQVTGIPLPSAQKIVSAARETLDIKFRTALELKKER-----LNIHKITTGSKSLD 101
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
L GG+ +TE G GTGKTQ C L++ LP GGL+ +YID E TF R
Sbjct: 102 DLLGGGIETRDMTEFFGEYGTGKTQICHALAVNVQLPEDKGGLNAKAVYIDTEGTFRWER 161
Query: 153 M--IEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
+ I G + P+ ++ I ++ + ++++ L ++ VKL+++
Sbjct: 162 IEQIARGLNLDPD---------KVMENIYWIRAVNSHHQMAIVDQLYDMLSKDNVKLVIV 212
Query: 211 DSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESC 264
DS+ A PG E A Q L+ H+ + L+E I +VVTNQV RP
Sbjct: 213 DSLTSHFRAEFPG-RENLAMRQQLLNKHLHQLIRLSEIYDIAVVVTNQVMARP------- 264
Query: 265 LYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSP 323
D D T AV G AHA +R+ L+ G +R + +P P
Sbjct: 265 ---------DVFYGDPTS------AVGGNIVAHAPGVRVQLKRSRGNKRIARIVDAPHLP 309
Query: 324 PLAFSFTINPSGISLLTD 341
F I GI D
Sbjct: 310 EGETVFVITEYGIKDAED 327
>gi|449480344|ref|XP_002196350.2| PREDICTED: DNA repair protein RAD51 homolog 3 [Taeniopygia guttata]
Length = 521
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 144/350 (41%), Gaps = 63/350 (18%)
Query: 19 FAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAAT- 77
AA TA++ L L K + + E AL +V + +TA R T
Sbjct: 172 LAAAGFQTAQELLDTGPCGLSKEIGISREEALEALQVVRQECHGHARTAEGSSSTRKCTA 231
Query: 78 ------EHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAH 131
E G + T LD L GGV +TE+ G G GKTQ C++L++ +P
Sbjct: 232 LELLEEEQSQGFIITFCSALDNILGGGVQLTKITEICGAPGVGKTQLCMQLAVDVQIPEC 291
Query: 132 YGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLS---- 187
+GG+ G ++ID E +F R++++ A+ + H AQ+ L+ SL
Sbjct: 292 FGGIAGEAVFIDTEGSFMVDRVVDIAAACV-QHCHLIAEAQQEEDHQKALETFSLENILS 350
Query: 188 --------EFTESLEKIKVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQHPLSW 233
++TE L +V LL ++V+L+VID + P H+ LS
Sbjct: 351 HIYYFRCRDYTELL--AQVYLLPEFLSEHSKVRLVVIDGI--AFPFRHDFED-----LSL 401
Query: 234 HISLITSLAE-------FSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSH 286
L+ LA+ R +V+TNQ+ RI + + S
Sbjct: 402 RTRLLNGLAQQLIIIANDHRAAVVLTNQM-----------------TTRIGQSQ----ST 440
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+V LG W HA T+RL+ + QR + KSP+ ++ I G
Sbjct: 441 LVPALGESWGHAATVRLIFHWDNSQRLATLYKSPSQKESTIAYHITSHGF 490
>gi|431896119|gb|ELK05537.1| DNA repair protein RAD51 like protein 1 [Pteropus alecto]
Length = 339
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAIFAINADGVGDAKD 339
>gi|91080339|ref|XP_974640.1| PREDICTED: similar to RAD51 homolog protein [Tribolium castaneum]
gi|270006418|gb|EFA02866.1| spindle A-like protein [Tribolium castaneum]
Length = 338
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 131/295 (44%), Gaps = 32/295 (10%)
Query: 47 SEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTE 106
++V LA ++ V F TA + +RA L T K LD L GG+ G +TE
Sbjct: 68 AKVDKLLAEAAKFVNMGFTTATDIHRRRANIIQL----TTGSKELDKLLGGGIETGSITE 123
Query: 107 LVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFH 166
+ G TGKTQ C L++ L GG +G +YID E TF R++ + E ++
Sbjct: 124 IFGEFRTGKTQICHTLAVTCQLALESGGGEGKCLYIDTEGTFRPERLLPV-----AERYN 178
Query: 167 SKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR-- 224
G Q++ ++ + + TE L +++++ LL++DS +L + R
Sbjct: 179 MDG--QQVLDNVVFARAFNTDHQTELLVHAAAMMMESRYCLLIVDSATSLYRTDYSGRGE 236
Query: 225 -APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRY 283
+ Q+ L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 237 LSARQNHLARFLRMLLRLADEFGVAVVLTNQVVAQV-DGAAMFNADPKK----------- 284
Query: 284 YSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AH+ T RL L G+ R + SP P F I P GI
Sbjct: 285 -----PIGGNIMAHSSTTRLSLRKGRGEARVCKIYDSPCLPESEAIFAIRPDGIG 334
>gi|109689236|dbj|BAE96772.1| homologue of the bacterial recA and yeast RAD51/DMC1 [Aeropyrum
pernix]
Length = 319
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 115/262 (43%), Gaps = 41/262 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GG+ +TEL G G+GKTQ C +LS+ LP GGL+G +YID
Sbjct: 86 ITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYID 145
Query: 144 VESTFTSRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
E TF R+ +M G P+ E+ I ++ + ++K+ +
Sbjct: 146 TEGTFRWERIEQMARGVGLDPD---------EVMKNIYWIRAINSHHQIAIVDKLFTMVK 196
Query: 202 QNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV-- 255
+KL+V+DS+ A PG E A Q L+ H+ + LA+ + +V+TNQV
Sbjct: 197 NVNIKLVVVDSVTSHFRAEFPG-RENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMA 255
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
RP D D T+ AV G HA +R+ L+ G +R
Sbjct: 256 RP----------------DVFYGDPTQ------AVGGHVLGHAPGVRVYLKKSRGNKRIA 293
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
V +P P F I GI
Sbjct: 294 RVVDAPHLPEGETVFAITEWGI 315
>gi|50978688|ref|NP_001003043.1| DNA repair protein RAD51 homolog 1 [Canis lupus familiaris]
gi|75047603|sp|Q8MKI8.1|RAD51_CANFA RecName: Full=DNA repair protein RAD51 homolog 1; AltName:
Full=cRad51
gi|20387091|dbj|BAB91246.1| Rad51 [Canis lupus familiaris]
Length = 339
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++R+ + T K LD L
Sbjct: 59 ELISIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>gi|290559566|gb|EFD92895.1| DNA repair and recombination protein RadA [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 348
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 128/292 (43%), Gaps = 52/292 (17%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F + L ++R + + + T + + L GGV +TE G G+GK+Q +L+
Sbjct: 93 FMSGLEFEDKRKSVQRI----STGSEAFNILLGGGVETQAITECYGEYGSGKSQMAFQLA 148
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGLDG I+ID E TF R+ ++ A SKG+ + A LQ
Sbjct: 149 VDVQLPVEKGGLDGHAIWIDTEGTFRPSRIEQLAA--------SKGLDPKQA-----LQN 195
Query: 184 TSLSEFTESLEKI----KVSLLQN---QVKLLVIDSMEALVPGVHEQR---APGQHPLSW 233
+ S ++ KV L N ++KL+V+DSM AL + R A Q ++
Sbjct: 196 IKIGRAYSSDHQVLLVNKVPELVNADPKIKLIVVDSMMALFRAEYVGRGTLADRQQKVNV 255
Query: 234 HISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
+ + LA+ I + +TNQV RP D + D T AV
Sbjct: 256 VLHTLQRLADRFNIAVYITNQVMARP----------------DVMFGDPT------AAVG 293
Query: 292 GFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDD 342
G H T R+ L + K G R + SP+ P SF I +GI+ L ++
Sbjct: 294 GHIIGHVATYRIYLRKGKKGSRVAKLVDSPSLPEGEASFEITSNGIADLDEE 345
>gi|91773967|ref|YP_566659.1| DNA repair and recombination protein RadA [Methanococcoides
burtonii DSM 6242]
gi|121691598|sp|Q12UG7.1|RADA_METBU RecName: Full=DNA repair and recombination protein RadA
gi|91712982|gb|ABE52909.1| DNA repair and recombination protein RadA [Methanococcoides
burtonii DSM 6242]
Length = 325
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 121/287 (42%), Gaps = 42/287 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T L++E+R L G L T D + GG+ +TE+ G G+GKTQ +L+
Sbjct: 66 FETGDLVLERRK----LVGKLSTGCTEFDEMMGGGIETQSITEMYGEFGSGKTQIAHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM--------GASSFPEIF-HSKGMAQEM 174
+ LP GGL G VI ID E+TF R+ +M G PE F + +A+
Sbjct: 122 VNVQLPPEQGGLGGSVIMIDTENTFRPERIAQMVKGISDKHGIEYDPEEFLKNIHVARAF 181
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L S +E L+ ++ VKLL++DS+ A + R A Q L
Sbjct: 182 NSNHQILLVDSANELANELKNTEMP-----VKLLIVDSLTAHFRAEYIGRGTLADRQQKL 236
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
+ H+ I + S +VVTNQV + K D D T+ +
Sbjct: 237 NKHLHEILRFGDLSNACVVVTNQV--------------MSKPDAFFGDPTK------PIG 276
Query: 292 GFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
G H T RL + G+ R + + SP P ++ GI
Sbjct: 277 GHILGHTATFRLYIRKSKGEKRIVKLVDSPNLPDGEALISVTTDGIG 323
>gi|148643393|ref|YP_001273906.1| DNA repair and recombination protein RadA [Methanobrevibacter
smithii ATCC 35061]
gi|222445636|ref|ZP_03608151.1| hypothetical protein METSMIALI_01276 [Methanobrevibacter smithii
DSM 2375]
gi|166218764|sp|A5UMW0.1|RADA_METS3 RecName: Full=DNA repair and recombination protein RadA
gi|148552410|gb|ABQ87538.1| DNA repair protein RadA, RadA [Methanobrevibacter smithii ATCC
35061]
gi|222435201|gb|EEE42366.1| DNA repair and recombination protein RadA [Methanobrevibacter
smithii DSM 2375]
Length = 311
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA ++E+R GH+ +G + + GG+ +TE+ G G+GK+Q +L+
Sbjct: 63 FETAYDVLERRRDV----GHISVGSEGFNDLIGGGIETQSITEVFGEFGSGKSQISHELA 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFP-EIFHSKGMAQEMAGRILVLQ 182
+ LP GGLDG ++ID E+TF R IE A+ F +I E+ +I V +
Sbjct: 119 VTVQLPPEKGGLDGECVFIDTENTFRPER-IEQIANGFELDI-------DEVLQKIHVAR 170
Query: 183 PTSLSEFTESLEKIKVSLLQ-NQVKLLVIDSMEALVPGVH---EQRAPGQHPLSWHISLI 238
+ S EKI + Q N +KL+++DS+ A + E A Q L+ H+ +
Sbjct: 171 AFNSSHQILMAEKINELIQQGNNIKLVIVDSLMAHFRAEYVGRESLAVRQQKLNQHLHAL 230
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
+A + + +TNQV+ K D T+ A+ G HA
Sbjct: 231 QQIANTYNVAVFITNQVQA--------------KPDSFFGSPTK------AIGGHVLGHA 270
Query: 299 VTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
T R+ L+ +G+R + SP P F I GI
Sbjct: 271 STYRIWLKKGLAGKRIARLVDSPHLPEGECVFKIKTEGI 309
>gi|432947346|ref|XP_004084000.1| PREDICTED: DNA repair protein XRCC3-like [Oryzias latipes]
Length = 342
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 128/306 (41%), Gaps = 22/306 (7%)
Query: 8 EMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTA 67
++ LP I++ N+ + ++ LSL +++ +L + EV L + +
Sbjct: 5 QLSLPPRISSALQRTNLKSVREVLSLPAVDVQRLTGLAHPEVHQLLTAAAHACRRHAPLS 64
Query: 68 LLLMEQRAATEHLGG-HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126
+L +++ G L LD L GG+P G +TEL G +G GKTQ L++SL
Sbjct: 65 VLQLQRGECCRCESGLRLGVSCPVLDGLLRGGLPVGGITELSGQSGAGKTQLALQISLSV 124
Query: 127 ALPAHYGGLDGGVIYIDVESTFTSRR---MIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
P +GGL GG +YI E +F RR MI A+ E+ S + + +
Sbjct: 125 QYPVEHGGLGGGALYICTEDSFPIRRLQQMISEQANLRSEVPSSLIRGLRFSDHVYIEHA 184
Query: 184 TSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVH--EQRAPGQHPLSWHISLITS 240
L L + V L V+L+V+DS+ AL E L S++
Sbjct: 185 ADLDSLQVCLSRRAPVLLAAGLVRLIVVDSVAALFRSEFQAEDWMERNKQLLTFSSMLHQ 244
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
L++ P++ NQV D L P S + LG WA+ V
Sbjct: 245 LSQEFTTPVLCINQVTDVLKDHDSLGPLS---------------SSVTPALGLAWANQVL 289
Query: 301 IRLVLE 306
+RL++
Sbjct: 290 VRLMIR 295
>gi|355715056|gb|AES05211.1| RAD51-like protein [Mustela putorius furo]
Length = 338
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 133/312 (42%), Gaps = 46/312 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGIS 337
F IN G+
Sbjct: 324 EAMFAINADGVG 335
>gi|414145410|pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
gi|422919264|pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
gi|422919265|pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
gi|422919266|pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
gi|422919267|pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
gi|422919268|pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 120/265 (45%), Gaps = 50/265 (18%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T K LD L GG+ +TE+ G G+GKTQ L+++ LP GGL+G VI+
Sbjct: 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW 64
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSE----FTESLEKI 196
ID E+TF R+ EI ++G+ E+ I V + + + ++ +KI
Sbjct: 65 IDTENTFRPERI--------REIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKI 116
Query: 197 KVSLLQNQ-VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
K L ++ VKLL++DS+ + + R A Q L+ H++ + LA I + VT
Sbjct: 117 KELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT 176
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQ 311
NQV+ HI+ AH+ T+R+ L + K G+
Sbjct: 177 NQVQANG-------------------------GHIL-------AHSATLRVYLRKGKGGK 204
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
R + +P P F+I GI
Sbjct: 205 RIARLIDAPHLPEGEAVFSITEKGI 229
>gi|288869613|ref|ZP_05975231.2| DNA repair and recombination protein RadA [Methanobrevibacter
smithii DSM 2374]
gi|288860598|gb|EFC92896.1| DNA repair and recombination protein RadA [Methanobrevibacter
smithii DSM 2374]
Length = 314
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA ++E+R GH+ +G + + GG+ +TE+ G G+GK+Q +L+
Sbjct: 66 FETAYDVLERRRDV----GHISVGSEGFNDLIGGGIETQSITEVFGEFGSGKSQISHELA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFP-EIFHSKGMAQEMAGRILVLQ 182
+ LP GGLDG ++ID E+TF R IE A+ F +I E+ +I V +
Sbjct: 122 VTVQLPPEKGGLDGECVFIDTENTFRPER-IEQIANGFELDI-------DEVLQKIHVAR 173
Query: 183 PTSLSEFTESLEKIKVSLLQ-NQVKLLVIDSMEALVPGVH---EQRAPGQHPLSWHISLI 238
+ S EKI + Q N +KL+++DS+ A + E A Q L+ H+ +
Sbjct: 174 AFNSSHQILMAEKINELIQQGNNIKLVIVDSLMAHFRAEYVGRESLAVRQQKLNQHLHAL 233
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
+A + + +TNQV+ K D T+ A+ G HA
Sbjct: 234 QQIANTYNVAVFITNQVQA--------------KPDSFFGSPTK------AIGGHVLGHA 273
Query: 299 VTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
T R+ L+ +G+R + SP P F I GI
Sbjct: 274 STYRIWLKKGLAGKRIARLVDSPHLPEGECVFKIKTEGI 312
>gi|308161798|gb|EFO64232.1| Dmc1b [Giardia lamblia P15]
Length = 368
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 138/319 (43%), Gaps = 34/319 (10%)
Query: 23 NITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGG 82
I T + L T+ L + + ++V L++ +E+ F T +++R + L
Sbjct: 74 GIHTIQSLLMHTKKALGNVKGISEAKVDKILSIATEMCGKTFITGSEALKKREQVKRL-- 131
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
T +A L GGV +TE+ G TGKTQ C L++ A LP GG G +YI
Sbjct: 132 --STGCADFNALLGGGVETMSITEVFGEFRTGKTQLCHTLAVTAQLPVSKGGGAGKTVYI 189
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLL 201
D E TF ++ + E F G+ + A I+V + + + E + + ++
Sbjct: 190 DTEGTFRPEKV-----APIAERF---GLNPKKALDNIMVARVYTHEQQIECITALPKLMI 241
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+NQ L+++DS+ AL R A Q L H+S + LA+ + I VTNQV Q
Sbjct: 242 ENQFSLVIVDSLTALFRVDFTGRGELADRQQKLGQHLSGLAKLADEFNLAIFVTNQVMAQ 301
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
D + ++ +K + G AHA T RL L G R +
Sbjct: 302 V-DGAAMFTADPKK----------------PIGGHILAHASTTRLYLRKGRGDTRVAKIY 344
Query: 318 KSPTSPPLAFSFTINPSGI 336
SP+ S++I GI
Sbjct: 345 DSPSLAEGEASYSIAAEGI 363
>gi|61806653|ref|NP_001013559.1| DNA repair protein XRCC3 [Danio rerio]
gi|60552509|gb|AAH90820.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Danio rerio]
gi|182888930|gb|AAI64394.1| Xrcc3 protein [Danio rerio]
Length = 352
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 138/315 (43%), Gaps = 35/315 (11%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEV-RSALALVSEIVCPPFQTALLL 70
P+ IA + N +AK+ L ++ +L +L + ++V R A+ + + TAL L
Sbjct: 10 PRIIAAVKKG-NFRSAKEVLCVSGPDLQRLTRLSKADVQRLHQAVAASVRKSKPVTALQL 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
++ G L LD + GG+P +TEL G + GKTQFCL+L L P
Sbjct: 69 IQGECPVLEPGHRLSFACPVLDGLMRGGLPLRGITELAGESAAGKTQFCLQLCLSVQYPQ 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGASS-------FPEIFHSKGMAQEMAGRILVLQP 183
+GGL+ G +YI E +F +R+ ++ P + HS + I +
Sbjct: 129 EHGGLNSGAVYICTEDSFPIKRLRQLITQQPRLRPDLPPALIHSL----RFSDNIYIEHA 184
Query: 184 TSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPG---VHEQRAPGQHPLSWHISLIT 239
L + +++ V L + V+LLV+DS+ AL E +H L++ S +
Sbjct: 185 ADLEALQVCVSQRVPVLLKRGLVRLLVVDSVAALFRSEFQADEAVQRSRHLLAFS-STLH 243
Query: 240 SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRY---YSHIVAVLGFHWA 296
L+ P++ NQV +D R Y S ++ LG WA
Sbjct: 244 RLSHTYAAPVLCVNQV--------------TDVVDGPNPGRCDYGLVGSKVLPALGIAWA 289
Query: 297 HAVTIRLVLEAKSGQ 311
+ V +RL+L +GQ
Sbjct: 290 NQVMVRLMLRRLAGQ 304
>gi|14595977|gb|AAK68858.1| DNA repair protein [Nosema bombycis]
Length = 333
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 113/271 (41%), Gaps = 51/271 (18%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+L T LD L GG+ G +TE+ G TGKTQ C +++ LP GG +G +YI
Sbjct: 94 YLSTGSSELDKLLNGGIESGSITEIFGEFRTGKTQICHTVAVTCQLPPEQGGANGKALYI 153
Query: 143 DVESTFTSRRMIEMGAS------------SFPEIFHSKGMAQEMAGRILVLQPTSLSEFT 190
D E TF S R + S+ ++S +Q L++Q +SL
Sbjct: 154 DTEGTFRSERFFPIAERYGLDPTEVLDNISYARAYNSDHQSQ------LLIQASSL---- 203
Query: 191 ESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRI 247
+ QN+ +L+IDS AL R Q L+ ++ + ++AE +
Sbjct: 204 ---------MSQNKYAVLIIDSATALYRTDFSGRGELGARQISLARYLRDLVNIAETFHV 254
Query: 248 PIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-E 306
+++TNQV ++ V+K + G AHA T RL L +
Sbjct: 255 AVIITNQVVSNPDGAMSMFAGDVKK----------------PIGGNIMAHASTTRLSLRK 298
Query: 307 AKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
K R + SP P F+I +GI+
Sbjct: 299 GKGSTRICKIYDSPLLPESEAMFSITEAGIN 329
>gi|330040667|ref|XP_003239988.1| DNA repair protein Rad51 [Cryptomonas paramecium]
gi|327206914|gb|AEA39090.1| DNA repair protein Rad51 [Cryptomonas paramecium]
Length = 331
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 112/258 (43%), Gaps = 28/258 (10%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
HL T + +D L GG+ G +TEL G TGKTQ C L + L GG +G V+YI
Sbjct: 93 HLTTGSREIDRILKGGIETGSITELFGEFRTGKTQICHTLCVTCQLSIDQGGGEGRVLYI 152
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E TF R++ + A+ F Q++ I + + TE L + + +
Sbjct: 153 DTEGTFRPERIVAI-ANRFNL------NQQDVLDNIAFARAYNTDHQTELLNQACGMMAE 205
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
N+ +L++DS AL + R AP Q ++ + + LA+ I IV+TNQV +
Sbjct: 206 NRYAMLIVDSATALYRTDYTGRGELAPRQQHMAKFLRRLQRLADEFGIAIVITNQVIAKV 265
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
E +Y K V G AHA RL L+ G R +
Sbjct: 266 --EGGVYCIPDSKK---------------PVGGNVIAHASQTRLYLKKNKGNNRTCKIYD 308
Query: 319 SPTSPPLAFSFTINPSGI 336
SP P F+I+ GI
Sbjct: 309 SPNLPSNECVFSISELGI 326
>gi|221102981|ref|XP_002169171.1| PREDICTED: DNA repair protein RAD51 homolog A-like [Hydra
magnipapillata]
Length = 336
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 109/252 (43%), Gaps = 28/252 (11%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD L GG G +TE+ G TGKTQ C +L + LP GG +G +Y+D E TF
Sbjct: 104 KELDKLLQGGFETGSITEIFGEFRTGKTQLCHQLCVTCQLPVDCGGAEGKAMYVDTEGTF 163
Query: 149 TSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLL 208
R + + E + G QE+ + + + T+ L + + + LL
Sbjct: 164 RPERCL-----AVAERYGLNG--QEVLDNVAYARAYNSDHQTQLLIHASAMMSEARYALL 216
Query: 209 VIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
++DS AL + R + Q L+ + + LA+ + +V+TNQV Q D + +
Sbjct: 217 IVDSATALYRTDYSGRGELSARQMHLARFLRTLLRLADEFGVAVVITNQVVAQV-DGASM 275
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPP 324
+ +K + G AHA T RL L G+ R + SP P
Sbjct: 276 FQTDPKK----------------PIGGNIMAHASTTRLSLRKGRGETRICKIYDSPCLPE 319
Query: 325 LAFSFTINPSGI 336
FTINP GI
Sbjct: 320 SEAMFTINPDGI 331
>gi|71018413|ref|XP_759437.1| DNA repair protein RAD51 [Ustilago maydis 521]
gi|2500102|sp|Q99133.1|RAD51_USTMA RecName: Full=DNA repair protein RAD51
gi|1480734|gb|AAC61878.1| Rad51 [Ustilago maydis]
gi|46099044|gb|EAK84277.1| RA51_USTMA DNA repair protein RAD51 [Ustilago maydis 521]
Length = 339
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 113/258 (43%), Gaps = 30/258 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LDA L GG+ G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 102 ITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYID 161
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E+TF R++ + E F G +E+ + + + + L + + ++
Sbjct: 162 TENTFRPTRLL-----AVAERFGLNG--EEVLDNVAYARAYNADHQLQLLMQASAMMAES 214
Query: 204 QVKLLVIDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LL++DS+ +L G E A H + L+ EF + +V+TNQV Q
Sbjct: 215 RFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFG-VAVVITNQVVAQV 273
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEK 318
D + + +K + G AHA T RL L + + QR +
Sbjct: 274 -DGATAFTADAKK----------------PIGGNIVAHASTTRLSLRKGRGNQRICRIAD 316
Query: 319 SPTSPPLAFSFTINPSGI 336
SP P F I P GI
Sbjct: 317 SPCLPEADAVFAIGPEGI 334
>gi|399216906|emb|CCF73593.1| unnamed protein product [Babesia microti strain RI]
Length = 333
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 120/290 (41%), Gaps = 48/290 (16%)
Query: 60 VCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
+C F T + L ++R L T LD AL GG+ +TEL G TGKTQ C
Sbjct: 76 MCNSFITGIQLQQRRTKVLKL----TTGSSVLDQALGGGIETMAITELFGENRTGKTQLC 131
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS-------FPEIFHSKGMAQ 172
L + A LP+ G +G V +ID E TF ++I +G I +++
Sbjct: 132 HTLCVTAQLPSSMNGGNGKVCFIDTEGTFRPEKIIRIGGRYNMDSEIVLENILYARAFTH 191
Query: 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQH 229
E I+ L T+ S+ E + LL+IDS+ +L R A Q
Sbjct: 192 E---HIITLLSTAASKMCE-----------DNFSLLIIDSIMSLFRVDFAGRGELAERQQ 237
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVA 289
L+ +S ++ L E I I++TN V + + S+ +
Sbjct: 238 KLNKLLSGLSKLGEQFNIAILLTNHVISEPSGA------------------MSFVSNPIK 279
Query: 290 VLGFH-WAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
G H HA T RL L + K QR + SP+ P + F + SG++
Sbjct: 280 PAGGHVLGHASTFRLALRKGKGDQRICKIYDSPSLPEVECIFQLTDSGVA 329
>gi|302697701|ref|XP_003038529.1| hypothetical protein SCHCODRAFT_103780 [Schizophyllum commune H4-8]
gi|300112226|gb|EFJ03627.1| hypothetical protein SCHCODRAFT_103780, partial [Schizophyllum
commune H4-8]
Length = 339
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 126/288 (43%), Gaps = 31/288 (10%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA +IV FQ+A + +R+ H+ T K LDA L GG+ G +TEL G
Sbjct: 72 LAEAQKIVPLGFQSATEVHARRSELVHI----TTGSKQLDALLGGGIETGAITELFGEFR 127
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ 172
TGK+Q C L++ LP GG +G +YID E TF R++ + E F G +
Sbjct: 128 TGKSQLCHTLAVTCQLPVSMGGGEGKCLYIDTEGTFRPVRLL-----AVAERFGLNG--E 180
Query: 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQH 229
E+ + + + L + +++ LL++DS AL R + Q+
Sbjct: 181 EVLDNVAYARAYNADHQNSLLTSASALMSESRFCLLIVDSCTALYRTDFSGRGELSSRQN 240
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVA 289
L + + LA+ I +VVTNQV S+ ++ P+ + I
Sbjct: 241 HLGKFLRTLQRLADEFGIAVVVTNQV--MSNPDAAAGPYAGNEKKPI------------- 285
Query: 290 VLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G AHA T RL L +A+ R + SP P + F I SGI
Sbjct: 286 -GGNIMAHASTTRLQLKKARGNTRSCKIYDSPCLPEMETHFAILQSGI 332
>gi|325957924|ref|YP_004289390.1| DNA repair and recombination protein radA [Methanobacterium sp.
AL-21]
gi|325329356|gb|ADZ08418.1| DNA repair and recombination protein radA [Methanobacterium sp.
AL-21]
Length = 311
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 126/282 (44%), Gaps = 42/282 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA+ +ME+R G + T GLD + GG+ +TE+ G G+GK+Q +L+
Sbjct: 63 FETAMDVMERRKDV----GRVTTGSTGLDELIGGGIETQSITEVFGEFGSGKSQISHELA 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF----PEIFHSKGMAQEMAGRIL 179
+ LP GGL G ++ID E+TF R+ ++ A F E+ + +A+
Sbjct: 119 VTVQLPPEKGGLGGQCVFIDTENTFRPERIKQI-AEGFELDVEEVLTNIHIARAFNSSHQ 177
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVH---EQRAPGQHPLSWHIS 236
+L ++E +S I KL+++DS+ A + E A Q L+ H+
Sbjct: 178 ILMADKVNELIQSGANI---------KLVIVDSLTAHFRAEYVGRESLATRQQKLNQHLH 228
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
++++A + + VTNQV+ K D T+ A+ G
Sbjct: 229 TLSNIANTYNVAVFVTNQVQS--------------KPDAFFGSPTK------AIGGHVLG 268
Query: 297 HAVTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
HA T R+ L+ +G+R + SP P F + GIS
Sbjct: 269 HAATYRIWLKKGLAGKRIARLVDSPHLPEGEAVFKVITEGIS 310
>gi|340502670|gb|EGR29337.1| hypothetical protein IMG5_158050 [Ichthyophthirius multifiliis]
Length = 479
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 133/310 (42%), Gaps = 45/310 (14%)
Query: 33 LTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLD 92
+TE ++ K+LD+ ++V FQTA +++RA ++ T LD
Sbjct: 206 MTEAKIDKILDI-----------ACKLVPNDFQTAAEYLQRRAQVINI----STGSSELD 250
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
L GG+ G +TE+ G TGKTQ C L + LP GG +G +YID E TF R
Sbjct: 251 KILGGGMETGSITEIFGEFRTGKTQICHTLCITCQLPKSKGGGEGKAMYIDTEGTFRPER 310
Query: 153 MIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVID 211
+ E A F G+ QE + + + + + L + + +++ LL++D
Sbjct: 311 L-EQIAQRF-------GLDPQECMENVAYARAYNCDQQNKLLIQAAALMAESKYSLLIVD 362
Query: 212 SMEALVPGVHEQRAP---GQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
S AL R Q+ L + I LA+ I +V+TNQV Q D S ++
Sbjct: 363 SSTALYRTDFLGRGELSVRQNHLGKFLRNIQRLADEFSIAVVITNQVMSQV-DGSAMFAG 421
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAF 327
++K + G AHA T RL L G+ R + SP P
Sbjct: 422 DMKK----------------PIGGNIMAHASTTRLYLRKGRGESRICKIYDSPCLPESEA 465
Query: 328 SFTINPSGIS 337
F I+ GI+
Sbjct: 466 IFGISQGGIA 475
>gi|410721995|ref|ZP_11361313.1| DNA repair and recombination protein RadA [Methanobacterium sp.
Maddingley MBC34]
gi|410597944|gb|EKQ52545.1| DNA repair and recombination protein RadA [Methanobacterium sp.
Maddingley MBC34]
Length = 311
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 129/281 (45%), Gaps = 42/281 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TAL +ME+R GH+ T GLD + GG+ +TE+ G G+GK+Q +++
Sbjct: 63 FETALDVMERRKDV----GHIITGSTGLDELIGGGIETQAITEVFGEFGSGKSQISHEIA 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGL G ++ID E+TF R+ ++ ++ +E+ G+I + +
Sbjct: 119 VTVQLPPEKGGLCGDCVFIDTENTFRPERIKQIAEGFTLDV-------EEVLGKIHIARA 171
Query: 184 TSLSEFTESLEKIKVSLLQN--QVKLLVIDSMEALVPGVH---EQRAPGQHPLSWHISLI 238
+ S +K+ L+Q+ ++L+++DS+ A + E A Q L+ H+ +
Sbjct: 172 FNSSHQILMADKVN-ELIQSGVNIRLVIVDSLTAHFRAEYVGRESLATRQQKLNQHLHTL 230
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
++A + + VTNQV RP + + S A+ G
Sbjct: 231 QNIANTYNVAVFVTNQVQARPDAF----------------------FGSPTKAIGGHVLG 268
Query: 297 HAVTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HA T R+ L+ +G+R + SP P F + G+
Sbjct: 269 HASTYRIWLKKGLAGKRIARLVDSPHLPEGEAVFKVVTEGV 309
>gi|157129016|ref|XP_001655247.1| RAD51C protein, putative [Aedes aegypti]
gi|108872406|gb|EAT36631.1| AAEL011307-PA [Aedes aegypti]
Length = 274
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 125/285 (43%), Gaps = 49/285 (17%)
Query: 74 RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYG 133
R ++ LG + T + LD A+ G+ G++TEL GP G+GKTQ CL+L + +P G
Sbjct: 11 REESKQLG--IVTFCRDLDQAIGNGISVGMITELCGPPGSGKTQMCLQLCINTQIPVQLG 68
Query: 134 GLDGGVIYIDVESTFTSRRMIEMGASSFPEI-----FHSKGMA--------QEMAGRILV 180
GL IY D F R+ E+ ++ H K +A + +
Sbjct: 69 GLGAKAIYFDTNFGFHPCRLQEIASACVTHCQKLVQIHKKELATVTRDFTVDSLMNGVYY 128
Query: 181 LQPTSLSEFTESLEKIKVSLLQ--NQVKLLVIDSMEALVPGVHE---QRAPGQHPLSWHI 235
S SE E +E + SLL+ +++KL+V+DS+ L+ E +R H + +
Sbjct: 129 KHIQSCSELLEGIETLG-SLLKSGDKIKLVVLDSVSFLIRNNIENSFERIEVDHVI---L 184
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHW 295
+ + LA + IV+TN V + + + S IV LG
Sbjct: 185 TKLHVLAHQYKCAIVITNDVTTRINGQD---------------------SKIVPALGDAH 223
Query: 296 AHAVTIRLVL----EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+H + R+VL E +G +VEK +A F I+ +GI
Sbjct: 224 SHKINQRIVLGQSDEDPAGVHIASVEKGLFRTRMAVKFQISQAGI 268
>gi|193603671|ref|XP_001948893.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Acyrthosiphon
pisum]
Length = 340
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 134/308 (43%), Gaps = 32/308 (10%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T+ L+ + + ++ LA S++V F +A + +R+ L T K LD
Sbjct: 57 TKKHLITIKGISEAKADKILAEASKMVPLGFTSATIFHLKRSEIIQL----TTGSKELDR 112
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+ G +TE+ G TGKTQ C L++ LP G +G +YID E TF R+
Sbjct: 113 LLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIGQNGGEGKCLYIDTEGTFRPERL 172
Query: 154 IEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM 213
+ S E + G ++ I + + T+ L + + +++ LL++DS
Sbjct: 173 L-----SVAERYQLVG--SDVLDNIACARAYNTDHQTQLLLQAGAMMAESRYALLIVDSA 225
Query: 214 EALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQV 270
AL + R + Q+ L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 226 MALYRTDYSGRGELSARQNHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGASMFAADP 284
Query: 271 QKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSF 329
+K V G AHA T RL L G+ R + SP P F
Sbjct: 285 KK----------------PVGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMF 328
Query: 330 TINPSGIS 337
IN GI
Sbjct: 329 AINADGIG 336
>gi|167382024|ref|XP_001735947.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901853|gb|EDR27840.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 264
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
++PT + +D L GG+P G +T++VG G GK+Q C++++ LP GGL+ IY
Sbjct: 20 NIPTFNQQIDQFLNGGIPLGEITQIVGFPGIGKSQLCMQIACNVQLPEEIGGLNSECIYY 79
Query: 143 DVESTFTS---RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVS 199
D S F S ++M E +S+PE K +E+ +I V QP + SL I
Sbjct: 80 DSYSQFCSFRVQKMAECICASYPE---YKLNVKEILKKIHVYQPHDIISLCSSLLSINNK 136
Query: 200 LLQNQVKLLVIDSM 213
L N++KL++IDS+
Sbjct: 137 L--NKIKLIIIDSI 148
>gi|432947216|ref|XP_004083949.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Oryzias
latipes]
Length = 340
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 132/309 (42%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++R+ + T K LD L
Sbjct: 60 ELLNIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQI----STGSKELDKLLQ 115
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 116 GGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKAMYIDTEGTFRPERLL-- 173
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + + +++ LL++DS AL
Sbjct: 174 ---AVAERYGLVG--SDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIVDSATAL 228
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 229 YRTDYSGRGELSARQGHLGRFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFSADPKK- 286
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 287 ---------------PIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 331
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 332 ADGVGDAKD 340
>gi|426232984|ref|XP_004010497.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 2 [Ovis
aries]
Length = 342
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 118/280 (42%), Gaps = 47/280 (16%)
Query: 78 EHLGGHLPTRLKGLDAALC-----GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHY 132
+HL L R G + +C GG+ G +TE+ G TGKTQ C L++ LP
Sbjct: 94 KHLSDELLGRFYGYVSNICIVPFLGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDR 153
Query: 133 GGLDGGVIYIDVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTS 185
GG +G +YID E TF R++ + G+ + +++G +
Sbjct: 154 GGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARGFNTDHQ---------- 203
Query: 186 LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLA 242
T+ L + +++++ LL++DS AL + R + Q L+ + ++ LA
Sbjct: 204 ----TQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLA 259
Query: 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIR 302
+ + +V+TNQV Q D + ++ +K + G AHA T R
Sbjct: 260 DEFGVAVVITNQVVAQV-DGAAMFAADPKK----------------PIGGNIIAHASTTR 302
Query: 303 LVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
L L G+ R + SP P F IN G+ D
Sbjct: 303 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD 342
>gi|84784026|gb|ABC61978.1| DMC1-like protein [Trichomonas vaginalis]
Length = 338
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGV +TE+ G TGKTQ C L + A LP GG G V +ID E TF
Sbjct: 110 LDKLLGGGVESMSITEVFGEFRTGKTQLCHTLCVTAQLPLSQGGGQGKVCFIDTEGTFRP 169
Query: 151 RRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
R+ P I G+ E IL + + + + ++ + ++Q +LL+
Sbjct: 170 ERI--------PVIAQRFGVDGDEALENILYARAFTHEQQMQLIQAAAAQMAEDQYRLLI 221
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
IDS+ AL R A Q L ++ +T LA I I +TNQV + +S L+
Sbjct: 222 IDSITALFRVDFSGRGELAERQQTLGQMMAALTKLASEFNIAIFITNQV--MASPDSALF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPL 325
Q K + G AHA T RL L + K +R + SP+ P
Sbjct: 280 -VQAPK----------------PIGGHILAHASTTRLYLRKGKGAERVAKIYDSPSLPEA 322
Query: 326 AFSFTINPSGISLLT 340
S+ ++ +GI+ LT
Sbjct: 323 EASYELSDAGITDLT 337
>gi|356567224|ref|XP_003551821.1| PREDICTED: DNA repair protein XRCC3 homolog [Glycine max]
Length = 288
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 114/263 (43%), Gaps = 29/263 (11%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGVP VTE VG +G GKTQ CL+L+L A LP +GGL I+I E F
Sbjct: 23 LDRCLAGGVPCASVTEFVGESGCGKTQLCLQLALSAQLPPSHGGLSASSIFIHTEFPFPF 82
Query: 151 RRMIEMG---ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--- 204
RR+ + +S P++ + R+ + S E + I+ LL ++
Sbjct: 83 RRLRHLSRAFRASHPDL-----PCSDPCDRVFLRAVHSAHELLNLIPTIETFLLHSKSPW 137
Query: 205 --VKLLVIDSMEALVPGVHEQRAPG---QHPLSWHIS-LITSLAEFSRIPIVVTNQVRPQ 258
V+++VIDS+ AL E + L + IS + LA+ I +VVTNQV
Sbjct: 138 RPVRIIVIDSIAALFRSDFENTGSDLRRRSSLFFGISGGLRQLAKRFGIAVVVTNQVVDL 197
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-----RF 313
D + + L R + LG WAH V RL L + R
Sbjct: 198 IGDGDVSF----GSLGNGLYSSGR---RVCPALGLAWAHCVNSRLFLSKDEDEPPVKTRK 250
Query: 314 MNVEKSPTSPPLAFSFTINPSGI 336
M V +P P + + I G+
Sbjct: 251 MRVVFAPHLPHSSCEYVIKGEGV 273
>gi|326427949|gb|EGD73519.1| rad51 protein [Salpingoeca sp. ATCC 50818]
Length = 332
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 28/257 (10%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD L GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF
Sbjct: 100 KELDTLLQGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGAEGKCLYIDTEGTF 159
Query: 149 TSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLL 208
R++ + E + G +++ + + + L++ + +++ L+
Sbjct: 160 RPERLL-----AVAERYGLSG--EDVLDNVAYARAYNSDHQMHLLQQASAMMAESRYALM 212
Query: 209 VIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
V+DS AL + R + Q L+ + + LA+ I +V+TNQV Q D + +
Sbjct: 213 VVDSATALFRTDYSGRGELSARQMALAQFLRTLMRLADEFGIAVVITNQVVAQV-DGAAM 271
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPP 324
+ +K + G AHA T RL L G+ R V SP P
Sbjct: 272 FAADPKK----------------PIGGNIMAHASTTRLYLRKGRGETRVCKVYDSPCLPE 315
Query: 325 LAFSFTINPSGISLLTD 341
F IN GI D
Sbjct: 316 SEAVFAINADGIGDAKD 332
>gi|442535546|gb|AGC52846.1| Rad51, partial [Macrobiotus cf. harmsworthi EABP-2013]
Length = 375
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 115/267 (43%), Gaps = 29/267 (10%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T K LD L GG+ G +TE+ G TGKTQ C +++ LP GG +G +YI
Sbjct: 134 QITTGSKELDRLLNGGIETGSITEMFGEFRTGKTQICHTMAVTCQLPVDLGGGEGKCLYI 193
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E TF R++ + E + G ++ + + + L + +++
Sbjct: 194 DTEGTFRPERLL-----AVAERYGMNG--SDVMDNVAYARAYNTDHQMALLVQAAAMMVE 246
Query: 203 NQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ LL++DS AL + R Q L+ + ++T LA+ + +V+TNQV
Sbjct: 247 SRYALLIVDSATALYRTDYTGRGELCARQMHLARFLRMLTRLADEFGVAVVITNQVVA-- 304
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
V M ++ R HI+ AHA T RL + G+ R +
Sbjct: 305 ---------TVDAMMPGVEPRKPIGGHII-------AHASTTRLSMRKGKGENRVCKIYD 348
Query: 319 SPTSPPLAFSFTINPSGISLLTDDGTE 345
SP P F I+P GI D G +
Sbjct: 349 SPCLPEGEAQFAISPEGIVDAKDKGDD 375
>gi|424812469|ref|ZP_18237709.1| DNA repair and recombination protein RadA [Candidatus Nanosalinarum
sp. J07AB56]
gi|339756691|gb|EGQ40274.1| DNA repair and recombination protein RadA [Candidatus Nanosalinarum
sp. J07AB56]
Length = 316
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 120/280 (42%), Gaps = 41/280 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T + E+R + + T + D L GG+ +TE G G+ KTQ +L+
Sbjct: 67 FETGMDKHERRKGMKRI----TTSCEAFDEILGGGIESQCITEFYGEYGSAKTQISHQLA 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF---PEIFHSKGMAQEMAGRILV 180
+ LP GG+D G +YID E TFT R+ +M E+ + +A+ V
Sbjct: 123 VNVQLPEGAGGMDRGAVYIDTEDTFTPERVEQMAEDKDLDPEEVLENIHVARAFNSDHQV 182
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISL 237
L L+E + + +N + L+V+DS+ A + R A Q L+ H++
Sbjct: 183 L----LAEEAQDI------CQENDIGLVVVDSLTAQFRSDYVGRGELAERQQKLNKHMNT 232
Query: 238 ITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAH 297
+ LA +VVTNQV + D++ D T+ A+ G AH
Sbjct: 233 LLRLANSHNAAVVVTNQV--------------MSNPDQMFGDPTK------AIGGHIVAH 272
Query: 298 AVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+RL L ++K +R + SP P F + GI
Sbjct: 273 NSAVRLYLRKSKKDKRIARLVDSPYMPEGEAVFKVKDRGI 312
>gi|4322494|gb|AAD16063.1| recombination/repair protein RadA [Cenarchaeum symbiosum]
Length = 369
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 110/259 (42%), Gaps = 31/259 (11%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T LDA L GG+ +TE+ G G+GKTQFC + + P GGL GGV+Y
Sbjct: 58 GMITTGTDALDALLGGGIETQAITEVFGEFGSGKTQFCHTMCVTTQKPKEEGGLGGGVMY 117
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
ID E TF R++ + + ++ A+ + G I+V + + S LE+ ++
Sbjct: 118 IDTEGTFRPERVVTIAKA------NNMDPAKLLDG-IIVARAYNSSHQVLILEEAGKTIQ 170
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+ +KL++ DS L + R A Q L +I L+ +AE ++ TNQV
Sbjct: 171 EENIKLIISDSTTGLFRSEYLGRGTLASRQQKLGRYIRLLARIAETYNCAVLATNQVSSS 230
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVE 317
D D TR V G HA T R+ + +R +
Sbjct: 231 P--------------DSFFGDPTR------PVGGNVVGHASTYRIYFRKGGKNKRVAKII 270
Query: 318 KSPTSPPLAFSFTINPSGI 336
SP P F + G+
Sbjct: 271 DSPHHPASEAVFELGERGV 289
>gi|403345476|gb|EJY72106.1| hypothetical protein OXYTRI_06896 [Oxytricha trifallax]
Length = 339
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 128/300 (42%), Gaps = 34/300 (11%)
Query: 47 SEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTE 106
++V + +IV FQTA E+R + HL T LD L GG+ G +TE
Sbjct: 69 AKVDKIVEAAQKIVNLGFQTASTYFEKRQSMVHL----TTGSSSLDQLLGGGIETGSITE 124
Query: 107 LVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFH 166
+ G TGKTQ C L + LP GG +G +Y+D E TF R+I + A F
Sbjct: 125 IFGEFRTGKTQICHTLCVTCQLPISKGGGEGMAMYVDTEGTFRPERLIPV-AKRF----- 178
Query: 167 SKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR- 224
G+ Q++ + + + + + L + + +N+ LLVIDS AL + R
Sbjct: 179 --GLDEQQVLDNVAYARAHNTDQQNKLLIQAAALMAENRFALLVIDSATALYRTDYSGRG 236
Query: 225 --APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR 282
+ Q L+ + + +A+ + +V+TNQV Q D S ++ +K
Sbjct: 237 ELSARQMHLAKFLRTLQRIADEFGVAVVITNQVVAQV-DGSAMFAADSKK---------- 285
Query: 283 YYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
+ G AHA RL L + ++ R + SP P + I GI D
Sbjct: 286 ------PIGGHIIAHASCTRLSLRKGRNESRVCKIYDSPCLPESEAMYAITNDGIDDYKD 339
>gi|47213355|emb|CAF92978.1| unnamed protein product [Tetraodon nigroviridis]
Length = 267
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 118/253 (46%), Gaps = 12/253 (4%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVC--PPFQTALL 69
P+ A + AR + + +D L + LEL L + S+V+ LA + PP +L
Sbjct: 5 PRIAAGVRRAR-LKSVRDLLCASALELQSLTGLSPSDVQQLLATAAAACRAHPPVPAVVL 63
Query: 70 LMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALP 129
+ + E G L LD L GG+P G +TEL G + GKTQ L+L L P
Sbjct: 64 HLGECPRLES-GLRLSVGCAVLDELLRGGLPAGGITELSGQSSAGKTQLALQLCLCVQYP 122
Query: 130 AHYGGLDGGVIYIDVESTFTSRRMIEMGASSF---PEIFHSKGMAQEMAGRILVLQPTSL 186
YGGLD G +YI E+ F RR+ ++ + P++ S + + R+ V L
Sbjct: 123 TQYGGLDSGAVYICTENCFPIRRLQQLISDQHALRPDVPPSLISTLKFSDRVYVEHAADL 182
Query: 187 SEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFS 245
L ++ + L + V+LLV+DS+ A+ G Q A Q +S+ ++L S
Sbjct: 183 DSLQRCLSRRVPLLLARGLVRLLVLDSVAAVFRG-EFQAAEWQERTRQMLSVSSTLHRLS 241
Query: 246 ---RIPIVVTNQV 255
P++ NQV
Sbjct: 242 WDFATPVLCINQV 254
>gi|54696278|gb|AAV38511.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) [Homo
sapiens]
Length = 339
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 134/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP G +G +YID E TF R++
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGEGEGKAMYIDTEGTFRPERLL-- 172
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + +++++ LL++DS AL
Sbjct: 173 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATAL 227
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 228 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 285
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 286 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 331 ADGVGDAKD 339
>gi|406864043|gb|EKD17089.1| meiotic recombination protein dmc1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 339
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 139/325 (42%), Gaps = 38/325 (11%)
Query: 21 ARNITTAKDALSLTELELMKLL---DVELSEVRSALALVSEIVCPPFQTALLLMEQRAAT 77
+ NI T +S T L+K+ D+++ +++ A +S F TA L + R
Sbjct: 40 SNNIHTVATLISTTTRRLLKIKGFSDIKVEKIKDAAKKLSPTA--GFMTAAELGQIRKRC 97
Query: 78 EHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDG 137
+ T K LDAAL GG + E+ G GKTQ ++++A LP GG +G
Sbjct: 98 IRI----STGSKQLDAALNGGFQTMSINEVYGEFRCGKTQLAHTMAVIAQLPKEMGGAEG 153
Query: 138 GVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEF-TESLEKI 196
V YID E TF R+ E+ A F G+ + A + SE TE LE +
Sbjct: 154 KVAYIDTEGTFRPERIAEI-AERF-------GVDPDQACENIAYARAQNSEMQTELLEGL 205
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTN 253
+ N+ +LLVIDS+ +L + R + Q L + T +AE + +++TN
Sbjct: 206 AANFATNEYRLLVIDSVMSLYRTDYCGRGELSERQQVLGQFLRRATQMAEEFNLVVLMTN 265
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QR 312
QV S L+ R HI+ AHA T RL+L G +R
Sbjct: 266 QVMSDPG-ASALFAG--------ADGRKPAGGHIL-------AHASTTRLLLRKGRGEER 309
Query: 313 FMNVEKSPTSPPLAFSFTINPSGIS 337
+ SP P ++ I GI
Sbjct: 310 VAKIVDSPDCPEREATYIITTGGID 334
>gi|118575453|ref|YP_875196.1| RecA/RadA recombinase [Cenarchaeum symbiosum A]
gi|145559520|sp|O93748.2|RADA_CENSY RecName: Full=DNA repair and recombination protein RadA
gi|118193974|gb|ABK76892.1| RecA/RadA recombinase [Cenarchaeum symbiosum A]
Length = 398
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 110/259 (42%), Gaps = 31/259 (11%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T LDA L GG+ +TE+ G G+GKTQFC + + P GGL GGV+Y
Sbjct: 87 GMITTGTDALDALLGGGIETQAITEVFGEFGSGKTQFCHTMCVTTQKPKEEGGLGGGVMY 146
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
ID E TF R++ + + ++ A+ + G I+V + + S LE+ ++
Sbjct: 147 IDTEGTFRPERVVTIAKA------NNMDPAKLLDG-IIVARAYNSSHQVLILEEAGKTIQ 199
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+ +KL++ DS L + R A Q L +I L+ +AE ++ TNQV
Sbjct: 200 EENIKLIISDSTTGLFRSEYLGRGTLASRQQKLGRYIRLLARIAETYNCAVLATNQVSSS 259
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVE 317
D D TR V G HA T R+ + +R +
Sbjct: 260 P--------------DSFFGDPTR------PVGGNVVGHASTYRIYFRKGGKNKRVAKII 299
Query: 318 KSPTSPPLAFSFTINPSGI 336
SP P F + G+
Sbjct: 300 DSPHHPASEAVFELGERGV 318
>gi|159119566|ref|XP_001710001.1| Dmc1b [Giardia lamblia ATCC 50803]
gi|30578213|gb|AAP35103.1|AF485824_1 DMC1-B [Giardia intestinalis]
gi|33667820|gb|AAQ24510.1| Dmc1b [Giardia intestinalis]
gi|157438119|gb|EDO82327.1| Dmc1b [Giardia lamblia ATCC 50803]
Length = 368
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 138/319 (43%), Gaps = 34/319 (10%)
Query: 23 NITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGG 82
I T + L T+ L + + ++V L++ +E+ F T +++R + L
Sbjct: 74 GIHTIQSLLMHTKKALGNVKGISEAKVDKILSVATEMCGKTFITGSEALKKRQQVKRL-- 131
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
T +A L GGV +TE+ G TGKTQ C L++ A LP GG G +YI
Sbjct: 132 --STGCADFNALLGGGVETMSITEVFGEFRTGKTQLCHTLAVTAQLPVSKGGGGGKTVYI 189
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLL 201
D E TF ++ + E F G+ + A I+V + + + E + + ++
Sbjct: 190 DTEGTFRPEKV-----APIAERF---GLNPKKALDNIMVARVYTHEQQIECITALPKLMV 241
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+NQ L+++DS+ AL R A Q L H+S + LA+ + + VTNQV Q
Sbjct: 242 ENQFSLVIVDSLTALFRVDFTGRGELADRQQKLGQHLSGLAKLADEFNLAVFVTNQVMAQ 301
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
D + ++ +K + G AHA T RL L G R +
Sbjct: 302 V-DGAAMFTADPKK----------------PIGGHILAHASTTRLYLRKGRGDTRVAKIY 344
Query: 318 KSPTSPPLAFSFTINPSGI 336
SP+ S++I GI
Sbjct: 345 DSPSLAEGEASYSIAAEGI 363
>gi|340376025|ref|XP_003386534.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Amphimedon
queenslandica]
Length = 345
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 111/270 (41%), Gaps = 41/270 (15%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T K LD L GG+ G +TE+ G TGKTQ C L++ LP GG +G +YI
Sbjct: 106 QITTGSKELDTLLKGGIETGSITEIFGEFRTGKTQLCHMLAVTCQLPIDNGGGEGKCLYI 165
Query: 143 DVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK 195
D E TF R++ + GA + +++ + ++L+ +SE
Sbjct: 166 DSEGTFRPERLLAVAERYNLSGADVLDNVAYARAYNTDHQSQLLLQAAAMMSE------- 218
Query: 196 IKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
+ LLV+DS AL + R + Q L+ + + L++ + +V+T
Sbjct: 219 -------TRYALLVVDSATALYRTDYSGRGELSARQMHLARFLRTLLRLSDEFGVAVVIT 271
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ- 311
NQV Q + ++ +K + G AHA T RL L G+
Sbjct: 272 NQVVAQVDGAAAMFSADPKK----------------PIGGNIIAHASTTRLYLRKGRGET 315
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
R + SP P F IN GI D
Sbjct: 316 RICKIYDSPCLPEAEAMFAINADGIGDAKD 345
>gi|340714319|ref|XP_003395677.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Bombus
terrestris]
gi|350417329|ref|XP_003491369.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 1
[Bombus impatiens]
gi|350417331|ref|XP_003491370.1| PREDICTED: DNA repair protein RAD51 homolog 1-like isoform 2
[Bombus impatiens]
Length = 341
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 106/251 (42%), Gaps = 27/251 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G +GKTQ C L++ LP GG +G +YID E TF
Sbjct: 110 LDRLLGGGIETGSITEIFGEFRSGKTQLCHTLAVNCQLPIDMGGAEGKCLYIDTEGTFRP 169
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+I + E + G + + + + T+ L + + +++ LL++
Sbjct: 170 ERLI-----AVAERYKIAG--DSVLDNVACARAYNTDHQTQLLIQASAMMTESRYALLIV 222
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
DS L + R A Q L + ++ LA+ + +V+TNQV Q + ++
Sbjct: 223 DSATGLYRTEYSGRGELAARQMHLGRFLRMLLRLADEHGVAVVITNQVVAQVDGAASMFG 282
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLA 326
+K + G AHA T RL L G+ R + SP P
Sbjct: 283 GDQKK----------------PIGGHILAHASTTRLYLRKGRGETRICKIYDSPCLPESE 326
Query: 327 FSFTINPSGIS 337
F IN GI
Sbjct: 327 AMFAINADGIG 337
>gi|4885659|ref|NP_005423.1| DNA repair protein XRCC3 [Homo sapiens]
gi|153946427|ref|NP_001093588.1| DNA repair protein XRCC3 [Homo sapiens]
gi|153946430|ref|NP_001093589.1| DNA repair protein XRCC3 [Homo sapiens]
gi|20140428|sp|O43542.1|XRCC3_HUMAN RecName: Full=DNA repair protein XRCC3; AltName: Full=X-ray repair
cross-complementing protein 3
gi|20514393|gb|AAM23015.1|AF508041_1 X-ray repair complementing defective repair in Chinese hamster
cells 3 [Homo sapiens]
gi|2921390|gb|AAC05368.1| X-ray repair cross-complementing protein 3 [Homo sapiens]
gi|12654421|gb|AAH01036.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Homo sapiens]
gi|28071006|emb|CAD61884.1| unnamed protein product [Homo sapiens]
gi|30583673|gb|AAP36085.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Homo sapiens]
gi|60655103|gb|AAX32115.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
gi|60655105|gb|AAX32116.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
gi|119602243|gb|EAW81837.1| X-ray repair complementing defective repair in Chinese hamster
cells 3, isoform CRA_a [Homo sapiens]
gi|119602244|gb|EAW81838.1| X-ray repair complementing defective repair in Chinese hamster
cells 3, isoform CRA_a [Homo sapiens]
gi|119602245|gb|EAW81839.1| X-ray repair complementing defective repair in Chinese hamster
cells 3, isoform CRA_a [Homo sapiens]
gi|119602246|gb|EAW81840.1| X-ray repair complementing defective repair in Chinese hamster
cells 3, isoform CRA_a [Homo sapiens]
gi|119602247|gb|EAW81841.1| X-ray repair complementing defective repair in Chinese hamster
cells 3, isoform CRA_a [Homo sapiens]
gi|119602248|gb|EAW81842.1| X-ray repair complementing defective repair in Chinese hamster
cells 3, isoform CRA_a [Homo sapiens]
gi|123982694|gb|ABM83088.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
gi|123997359|gb|ABM86281.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
gi|193784889|dbj|BAG54042.1| unnamed protein product [Homo sapiens]
gi|193785686|dbj|BAG51121.1| unnamed protein product [Homo sapiens]
gi|193785777|dbj|BAG51212.1| unnamed protein product [Homo sapiens]
gi|261861620|dbj|BAI47332.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
Length = 346
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 153/348 (43%), Gaps = 43/348 (12%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 10 PRIIAAIKKAK-LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALQL 68
Query: 71 MEQ--RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
+Q R T+H L LDA L GG+P +TEL G + GKTQ L+L L
Sbjct: 69 HQQKERFPTQH--QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQF 126
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILVLQ 182
P +GGL+ G +YI E F +R+ ++ A + P K +I +
Sbjct: 127 PRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQK---LRFGSQIFIEH 183
Query: 183 PTSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITS 240
+ E + +K+ V L + +L+VIDS+ A P E + P + H+ SL +
Sbjct: 184 VADVDTLLECVNKKVPVLLSRGMARLVVIDSVAA--PFRCEFDSQASAPRARHLQSLGAT 241
Query: 241 LAEFS---RIPIVVTNQVRPQSHDESCLY-PFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
L E S + P++ NQV ++ + P + + LG WA
Sbjct: 242 LRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGF------------WDERVSPALGITWA 289
Query: 297 HAVTIRLVL------EAKSG--QRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +RL+ EA G R + V +P PP + S+TI+ G+
Sbjct: 290 NQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|332796456|ref|YP_004457956.1| DNA repair and recombination protein RadA [Acidianus hospitalis W1]
gi|332694191|gb|AEE93658.1| DNA repair and recombination protein RadA [Acidianus hospitalis W1]
Length = 305
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 122/301 (40%), Gaps = 53/301 (17%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + T + LD L GG+ +T
Sbjct: 43 IKEARDALDI-------RFKTALEVKKERMNVRKI----TTSSQALDGLLGGGIETRTMT 91
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA------- 158
E G G+GKTQ C ++S+ LP GGL G +YID E TF R+ M
Sbjct: 92 EFFGEFGSGKTQICHQISVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEAMAKAAGLDPD 151
Query: 159 SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP 218
++ I++ + + + + L EF +KV ++ + V A
Sbjct: 152 TAMDNIYYMRAINSDHQ----IAIGDDLQEFIAKNPSVKVVIVDS-----VTSHFRAEYT 202
Query: 219 GVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRI 276
G E A Q L+ H+ +T LAE + +++TNQV RP D
Sbjct: 203 G-RENLAARQQKLNKHLHQLTRLAEIYDLAVIITNQVMARP----------------DMF 245
Query: 277 LKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSG 335
D T VAV G H IR+ L+ G +R + +P P F I G
Sbjct: 246 YGDPT------VAVGGHTLYHVPGIRVQLKKSRGNKRIARIVDAPHLPEGEIVFAITEEG 299
Query: 336 I 336
I
Sbjct: 300 I 300
>gi|332843176|ref|XP_003314577.1| PREDICTED: DNA repair protein XRCC3 isoform 1 [Pan troglodytes]
gi|410260908|gb|JAA18420.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Pan troglodytes]
Length = 346
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 153/348 (43%), Gaps = 43/348 (12%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 10 PRIIAAIKKAK-LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALQL 68
Query: 71 MEQ--RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
+Q R T+H L LDA L GG+P +TEL G + GKTQ L+L L
Sbjct: 69 HQQKERFPTQH--QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQF 126
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILVLQ 182
P +GGL+ G +YI E F +R+ ++ A + P K +I +
Sbjct: 127 PRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQK---LRFGSQIFIEH 183
Query: 183 PTSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITS 240
+ E + +K+ V L + +L+VIDS+ A P E + P + H+ SL +
Sbjct: 184 VADVDTLLECVNKKVPVLLSRGMARLVVIDSVAA--PFRCEFDSQASAPRARHLQSLGAA 241
Query: 241 LAEFS---RIPIVVTNQVRPQSHDESCLY-PFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
L E S + P++ NQV ++ + P + + LG WA
Sbjct: 242 LRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGF------------WDERVSPALGITWA 289
Query: 297 HAVTIRLVL------EAKSG--QRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +RL+ EA G R + V +P PP + S+TI+ G+
Sbjct: 290 NQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|333988516|ref|YP_004521123.1| DNA repair and recombination protein radA [Methanobacterium sp.
SWAN-1]
gi|333826660|gb|AEG19322.1| DNA repair and recombination protein radA [Methanobacterium sp.
SWAN-1]
Length = 311
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 122/281 (43%), Gaps = 42/281 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TAL +ME+R G L T G D + GG+ +TE+ G G+GK+Q +++
Sbjct: 63 FETALDVMERRKDV----GRLTTGSTGFDELIGGGIETQSITEVFGEFGSGKSQISHEIA 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF----PEIFHSKGMAQEMAGRIL 179
+ LP GGL G ++ID E+TF R+ ++ A F E+ +A+
Sbjct: 119 VTVQLPPEKGGLGGECVFIDTENTFRPERIKQI-ADGFELDVEEVLQKIHIARAFNSSHQ 177
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHIS 236
+L ++E + +KL+++DS+ A + R A Q L+ H+
Sbjct: 178 ILMADKINELIQK---------GTDIKLVIVDSLTAHFRAEYVGRETLATRQQKLNQHLH 228
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+ ++A + + VTNQV+ K D T+ AV G A
Sbjct: 229 TLQTIANTYNVAVFVTNQVQS--------------KPDAFFGSPTK------AVGGHILA 268
Query: 297 HAVTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HA T R+ L+ +G+R + SP P F I G+
Sbjct: 269 HAATYRIWLKKGLAGKRIARLVDSPHLPEGEAVFKIVTEGV 309
>gi|397470932|ref|XP_003807064.1| PREDICTED: DNA repair protein XRCC3 [Pan paniscus]
Length = 346
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 153/348 (43%), Gaps = 43/348 (12%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 10 PRIIAAIKKAK-LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALQL 68
Query: 71 MEQ--RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
+Q R T+H L LDA L GG+P +TEL G + GKTQ L+L L
Sbjct: 69 HQQKERFPTQH--QRLSLGCPVLDALLHGGLPLDGITELAGRSSAGKTQLALQLCLAVQF 126
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILVLQ 182
P +GGL+ G +YI E F +R+ ++ A + P K +I +
Sbjct: 127 PRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQK---LRFGSQIFIEH 183
Query: 183 PTSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITS 240
+ E + +K+ V L + +L+VIDS+ A P E + P + H+ SL +
Sbjct: 184 VADVDTLLECVNKKVPVLLSRGMARLVVIDSVAA--PFRCEFDSQASAPRARHLQSLGAA 241
Query: 241 LAEFS---RIPIVVTNQVRPQSHDESCLY-PFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
L E S + P++ NQV ++ + P + + LG WA
Sbjct: 242 LRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGF------------WDERVSPALGITWA 289
Query: 297 HAVTIRLVL------EAKSG--QRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +RL+ EA G R + V +P PP + S+TI+ G+
Sbjct: 290 NQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|30584233|gb|AAP36365.1| Homo sapiens X-ray repair complementing defective repair in Chinese
hamster cells 3 [synthetic construct]
gi|61371827|gb|AAX43738.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
gi|61371833|gb|AAX43739.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [synthetic construct]
Length = 347
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 153/348 (43%), Gaps = 43/348 (12%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 10 PRIIAAIKKAK-LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALQL 68
Query: 71 MEQ--RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
+Q R T+H L LDA L GG+P +TEL G + GKTQ L+L L
Sbjct: 69 HQQKERFPTQH--QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQF 126
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILVLQ 182
P +GGL+ G +YI E F +R+ ++ A + P K +I +
Sbjct: 127 PRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQK---LRFGSQIFIEH 183
Query: 183 PTSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITS 240
+ E + +K+ V L + +L+VIDS+ A P E + P + H+ SL +
Sbjct: 184 VADVDTLLECVNKKVPVLLSRGMARLVVIDSVAA--PFRCEFDSQASAPRARHLQSLGAT 241
Query: 241 LAEFS---RIPIVVTNQVRPQSHDESCLY-PFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
L E S + P++ NQV ++ + P + + LG WA
Sbjct: 242 LRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGF------------WDERVSPALGITWA 289
Query: 297 HAVTIRLVL------EAKSG--QRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +RL+ EA G R + V +P PP + S+TI+ G+
Sbjct: 290 NQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|321471848|gb|EFX82820.1| hypothetical protein DAPPUDRAFT_299714 [Daphnia pulex]
Length = 341
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 131/303 (43%), Gaps = 32/303 (10%)
Query: 38 LMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCG 97
L+ + V ++ +A ++V F TA ++RA + T K LD L G
Sbjct: 62 LITIKGVSEAKADKIIAEAQKMVPMGFSTATEYHQKRAELVQV----TTGSKELDKLLGG 117
Query: 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157
G+ G +TE+ G TGKTQ CL L++ LP GG +G +YID E TF R++
Sbjct: 118 GIETGSITEIFGEFRTGKTQLCLTLAVTCQLPIDSGGAEGKCLYIDTEGTFRPERLL--- 174
Query: 158 ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217
+ E + G ++ + + + ++ L + + ++ LL++DS AL
Sbjct: 175 --AVAERYGLSG--SDVLDNVACARAFNTDHQSQLLIQASAMMADSRYALLIVDSATALY 230
Query: 218 PGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMD 274
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 231 RTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK-- 287
Query: 275 RILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINP 333
+ G AHA T RL L G+ R + SP P F I P
Sbjct: 288 --------------PIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPESEAMFAILP 333
Query: 334 SGI 336
GI
Sbjct: 334 DGI 336
>gi|319411653|emb|CBQ73697.1| DNA repair protein RAD51 [Sporisorium reilianum SRZ2]
Length = 354
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 113/258 (43%), Gaps = 30/258 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LDA L GG+ G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 102 ITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYID 161
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + E + G +E+ + + + + L + + ++
Sbjct: 162 TEGTFRPVRLL-----AVAERYGLNG--EEVLDNVAYARAYNADHQLQLLMQASAMMAES 214
Query: 204 QVKLLVIDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LL++DS+ +L G E A H + L+ EF + +V+TNQV Q
Sbjct: 215 RFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFG-VAVVITNQVVAQV 273
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEK 318
D + + +K + G AHA T RL L + + QR +
Sbjct: 274 -DGATAFTADAKK----------------PIGGNIVAHASTTRLSLRKGRGNQRICRIAD 316
Query: 319 SPTSPPLAFSFTINPSGI 336
SP P F+I P GI
Sbjct: 317 SPCLPEADAVFSIGPEGI 334
>gi|147903064|ref|NP_001079887.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Xenopus laevis]
gi|33417158|gb|AAH56103.1| MGC69118 protein [Xenopus laevis]
Length = 350
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 7 SEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQ- 65
E+ L I NI +A L+L+ EL KL ++ +++VR VS ++
Sbjct: 4 DEVELSPRIRAAVRKANIKSAGSILTLSVPELQKLANLSVADVRHLQKAVSAVLRKNLGV 63
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL + ++A L K LD L GG+P +TE+ G + GKTQ L+L L
Sbjct: 64 TALQMYSEKAKFPSQHQKLSLGCKVLDNFLRGGIPLVGITEIAGESSAGKTQIGLQLCLS 123
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFP---EIFHSKGMAQEMAGRILVLQ 182
P YGGL G +YI E F S+R+ ++ S ++ I V
Sbjct: 124 VQYPVEYGGLASGAVYICTEDAFPSKRLQQLIKSQHKLRSDVPSDVIKNIRFGDSIFVEH 183
Query: 183 PTSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEAL 216
+ TE + +K+ V LL+ ++L+VIDS+ AL
Sbjct: 184 TADVDTLTECIKKKVPVLLLRGSIRLVVIDSIAAL 218
>gi|351707390|gb|EHB10309.1| DNA repair protein RAD51-like protein 1 [Heterocephalus glaber]
Length = 336
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 112/262 (42%), Gaps = 42/262 (16%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
L A + GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF
Sbjct: 106 LSAGITGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRP 165
Query: 151 RRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
R++ + G+ + +++G + T+ L + ++++
Sbjct: 166 ERLLAVAERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVES 211
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ LL++DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q
Sbjct: 212 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV- 270
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKS 319
D + ++ +K + G AHA T RL L G+ R + S
Sbjct: 271 DGAAMFSADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDS 314
Query: 320 PTSPPLAFSFTINPSGISLLTD 341
P P F IN G+ D
Sbjct: 315 PCLPEAEAMFAINADGVGDAKD 336
>gi|440295039|gb|ELP87968.1| meiotic recombination protein dmc1, putative [Entamoeba invadens
IP1]
Length = 340
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 127/284 (44%), Gaps = 36/284 (12%)
Query: 60 VCP--PFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQ 117
VCP F +A + +E+RA + T D L GG+ VTE+ G TGKTQ
Sbjct: 81 VCPTHAFVSATIALERRANVIKI----TTGSAQFDTLLGGGIETMSVTEMFGEFRTGKTQ 136
Query: 118 FCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ-EMAG 176
C L++ A LPA+ G +G V YID E TF R+ ++ A F G+ Q +
Sbjct: 137 LCHTLAVTAQLPANLKGANGKVAYIDTEGTFRPERITQI-AERF-------GVDQTAVLD 188
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSW 233
IL+ + + + + L +I + +++ +LL++DS+ +L R + Q L
Sbjct: 189 NILIARAYTHEQQFDLLVEIAARMAEDRFRLLIVDSVTSLFRVDFSGRGELSERQQKLGK 248
Query: 234 HISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGF 293
++ + ++E + +V+TNQV + ++ + H++
Sbjct: 249 MMNRLIKISEEFNVAVVITNQVMSDPGGGAMF----------VVDPKKPIGGHVI----- 293
Query: 294 HWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
AHA T RL L G QR + + SP P ++ I GI
Sbjct: 294 --AHASTTRLYLRKGKGEQRIVKLYDSPNLPEAEATYAIEVGGI 335
>gi|312090474|ref|XP_003146628.1| rad51 [Loa loa]
gi|307758208|gb|EFO17442.1| DNA repair protein RAD51 [Loa loa]
Length = 360
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 114/263 (43%), Gaps = 27/263 (10%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T + LD L GGV G +TE+ G TGK+Q C L+++ LP GG +G ++I
Sbjct: 121 QIATGSRELDRLLGGGVETGSITEIFGEFRTGKSQLCHTLAVMCQLPVDMGGAEGKCLWI 180
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E TF R++ + K +Q++ ++ + + + L + + +
Sbjct: 181 DTEGTFRPERLLAIAE-------RHKLSSQDVLDNVVYARCHNTDHQMQLLIQGSAMMAE 233
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ LLV+DS AL + R A Q L+ ++ ++ L++ + +V+TNQV Q
Sbjct: 234 SRYALLVVDSATALFRTDYSGRGELASRQTMLAKYLRMLLKLSDEFGVAVVITNQVVSQV 293
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
++ + +K + G AHA T RL L G R +
Sbjct: 294 DGGCGMFQGETKK----------------PIGGNIMAHASTTRLYLRKGRGITRICKIYD 337
Query: 319 SPTSPPLAFSFTINPSGISLLTD 341
SP P F I GI TD
Sbjct: 338 SPCLPESEAVFAITTHGIDDATD 360
>gi|449269848|gb|EMC80589.1| DNA repair protein RAD51 like protein 3, partial [Columba livia]
Length = 327
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 125/293 (42%), Gaps = 54/293 (18%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+E+ A G + T LD L GGV +TE+ G G GKTQ C++L++
Sbjct: 38 TALELLEEEQAQ----GFIITFCSALDNTLGGGVQLTKITEICGAPGVGKTQLCMQLAVD 93
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
+P +GG+ G ++ID E +F R+ ++ A+ + H + +AQ
Sbjct: 94 VQIPECFGGVAGEAVFIDTEGSFMVDRVADIAAAC---VQHCQLIAQAQQE--------- 141
Query: 186 LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS-LAEF 244
++ +K L S+E+++ ++ R L + L+ L+E
Sbjct: 142 ----------------EDHLKALETFSLESILSHIYYFRCRDYIELLAQVYLLPDFLSEH 185
Query: 245 SRIPIVVTNQVR-PQSHD------ESCLYPFQVQKMDRILKDR-----------TRYYSH 286
S++ +VV + + P HD + L Q++ I D TR+
Sbjct: 186 SKVRLVVLDGIAFPFRHDFEDLSLRTRLLNGLAQQLIIIANDHKSAVVLTNQMTTRFGQS 245
Query: 287 ---IVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+V LG W HA T+RL+L + QR + KSP+ + I G
Sbjct: 246 QPMLVPALGESWGHAATVRLILHWDNSQRLATLYKSPSQEESTIPYCITSHGF 298
>gi|328788487|ref|XP_624827.3| PREDICTED: DNA repair protein RAD51 homolog 1 [Apis mellifera]
gi|380025667|ref|XP_003696590.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Apis florea]
Length = 341
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 106/251 (42%), Gaps = 27/251 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G +GKTQ C L++ LP GG +G +YID E TF
Sbjct: 110 LDRLLGGGIETGSITEIFGEFRSGKTQLCHTLAVNCQLPIDMGGAEGKCLYIDTEGTFRP 169
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+I + E + G + + + + T+ L + + +++ LL++
Sbjct: 170 ERLI-----AVAERYKIAG--DSVLDNVACARAYNTDHQTQLLIQASAMMTESRYALLIV 222
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
DS L + R A Q L + ++ LA+ + +V+TNQV Q + ++
Sbjct: 223 DSATGLYRTEYSGRGELAARQMHLGRFLRMLLRLADEHGVAVVITNQVVAQVDGAASMFG 282
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLA 326
+K + G AHA T RL L G+ R + SP P
Sbjct: 283 GDQKK----------------PIGGHIIAHASTTRLYLRKGRGETRICKIYDSPCLPESE 326
Query: 327 FSFTINPSGIS 337
F IN GI
Sbjct: 327 AMFAINADGIG 337
>gi|296005023|ref|XP_001349356.2| meiotic recombination protein dmc1-like protein [Plasmodium
falciparum 3D7]
gi|13876949|gb|AAK43698.1|AF356553_1 meiotic recombination protein DMC1-like protein [Plasmodium
falciparum]
gi|225632246|emb|CAD51205.2| meiotic recombination protein dmc1-like protein [Plasmodium
falciparum 3D7]
Length = 347
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 134/320 (41%), Gaps = 47/320 (14%)
Query: 34 TELELMKLLDVELSEVRSALALVSEI-VCPPFQTALLLMEQRAATEHLGGHLPTRLKGLD 92
T+ EL + + ++V L + S+I C F TA L+++R+ + T D
Sbjct: 63 TKKELCNVKGISEAKVDKILEVASKIENCSSFITANELVQKRSKVLKI----TTGSTVFD 118
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
L GG+ +TEL G GKTQ C L++ A LP G +G V YID E TF +
Sbjct: 119 QTLGGGIESMCITELFGENRCGKTQVCHTLAVTAQLPKSLNGGNGKVCYIDTEGTFRPEK 178
Query: 153 MIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQV 205
+ ++ G + I +++ E ++L + + E
Sbjct: 179 VCKIAERYGLDGEAVLDNILYARAFTHEHLYQLLAISAAKMCE--------------EPF 224
Query: 206 KLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDE 262
LLV+DS+ +L R + Q L+ +S+++ L+E I I++TNQV D
Sbjct: 225 ALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKLSEQFNIAILITNQVMS---DP 281
Query: 263 SCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPT 321
F M + H++ HA TIRL L + K QR V +P
Sbjct: 282 GATMTFIANPMKPV-------GGHVI-------GHASTIRLSLRKGKGDQRVCKVYDAPN 327
Query: 322 SPPLAFSFTINPSGISLLTD 341
P + F ++ G+ TD
Sbjct: 328 LPEVECIFQLSDKGVIDATD 347
>gi|388854421|emb|CCF52005.1| probable DNA repair protein RAD51 [Ustilago hordei]
Length = 339
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 113/258 (43%), Gaps = 30/258 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LDA L GG+ G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 102 ITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYID 161
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + E + G +E+ + + + + L + + ++
Sbjct: 162 TEGTFRPVRLL-----AVAERYGLNG--EEVLDNVAYARAYNADHQLQLLMQASAMMAES 214
Query: 204 QVKLLVIDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LL++DS+ +L G E A H + L+ EF + +V+TNQV Q
Sbjct: 215 RFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFG-VAVVITNQVVAQV 273
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEK 318
D + + +K + G AHA T RL L + + QR +
Sbjct: 274 -DGATAFTADAKK----------------PIGGNIVAHASTTRLSLRKGRGNQRICRIAD 316
Query: 319 SPTSPPLAFSFTINPSGI 336
SP P F+I P GI
Sbjct: 317 SPCLPEADAVFSIGPEGI 334
>gi|312136410|ref|YP_004003747.1| DNA repair and recombination protein rada [Methanothermus fervidus
DSM 2088]
gi|311224129|gb|ADP76985.1| DNA repair and recombination protein RadA [Methanothermus fervidus
DSM 2088]
Length = 311
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 129/292 (44%), Gaps = 42/292 (14%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
+A +I F+TAL ++E+R G + T K LD + GG+ +TE+ G G
Sbjct: 52 IAAARKIEKIDFETALDVVERRKNV----GRITTGSKALDDLIGGGIETQSITEVFGEFG 107
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ 172
+GK+Q +L++ LP GGL+ ++ID E+TF R+ ++ H K +
Sbjct: 108 SGKSQLAHELAVTVQLPIEKGGLEAEAVFIDTENTFRPERIEQIAK-------HFKLDTK 160
Query: 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQ--NQVKLLVIDSMEALVPGVHEQR---APG 227
++ I V + + S EK+ L+Q ++L+++DS+ + + R A
Sbjct: 161 KVLKNIYVARAFNSSHQILMAEKVN-DLIQEGKNIRLVIVDSLTSHFRAEYVGREALATR 219
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYS 285
Q L+ H+ + +LA I + VTNQV RP + + S
Sbjct: 220 QQKLNQHLHTLQNLATTYNIAVFVTNQVQARPDAF----------------------FGS 257
Query: 286 HIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
A+ G HA T R+ L + +G+R + SP P F I GI
Sbjct: 258 PTKAIGGHVLGHAATYRIWLKKGAAGKRIARLVDSPYLPEGECVFKITEEGI 309
>gi|18420327|ref|NP_568402.1| DNA repair protein RAD51-like 1 [Arabidopsis thaliana]
gi|55976288|sp|P94102.1|RAD51_ARATH RecName: Full=DNA repair protein RAD51 homolog 1; AltName:
Full=Rad51-like protein 1; Short=AtRAD51
gi|1706947|gb|AAB37762.1| RAD51 homolog [Arabidopsis thaliana]
gi|1706949|gb|AAC49555.1| AtRAD51 [Arabidopsis thaliana]
gi|2388778|emb|CAA04529.1| Rad51-like protein [Arabidopsis thaliana]
gi|332005514|gb|AED92897.1| DNA repair protein RAD51-like 1 [Arabidopsis thaliana]
Length = 342
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 137/317 (43%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + + + LD L
Sbjct: 62 DLLQIKGISDAKVDKIVEAASKLVPLGFTSASQLHAQRQEIIQI----TSGSRELDKVLE 117
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 118 GGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGTFRPQRLLQI 177
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + LL+
Sbjct: 178 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MIETRFALLI 223
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H L+ + + LA+ + +V+TNQV Q D S L
Sbjct: 224 VDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVITNQVVAQV-DGSAL 281
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPP 324
+ + G AHA T RL L + ++ +R V SP P
Sbjct: 282 FA----------------GPQFKPIGGNIMAHATTTRLALRKGRAEERICKVISSPCLPE 325
Query: 325 LAFSFTINPSGISLLTD 341
F I+ G++ D
Sbjct: 326 AEARFQISTEGVTDCKD 342
>gi|403374245|gb|EJY87063.1| Rad51 [Oxytricha trifallax]
Length = 352
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 125/295 (42%), Gaps = 32/295 (10%)
Query: 47 SEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTE 106
+++ L ++V FQTA +EQR L T KGLD L GG+ G +TE
Sbjct: 82 AKIDKILEACHKLVHMGFQTAGTYLEQRKDLVFL----STGSKGLDTLLGGGMETGSITE 137
Query: 107 LVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFH 166
+ G TGKTQ C L + LP GG G +YID E TF R+I + +
Sbjct: 138 IFGEFRTGKTQICHTLCVTCQLPVSQGGGAGMAMYIDTEGTFRPERLIPIAKRYGLD--- 194
Query: 167 SKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR-- 224
Q++ + + + + + L + + +++ LL++DS AL + R
Sbjct: 195 ----EQKVLDNVAYARAHNTDQQNKLLMQAAALMCESRFALLIVDSATALYRTDYSGRGE 250
Query: 225 -APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRY 283
+ Q L+ + + LA+ + +V+TNQV Q D + ++ +K
Sbjct: 251 LSARQMSLAKFLRQLQRLADEFGVAVVITNQVVAQV-DGASMFAADSKK----------- 298
Query: 284 YSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L + ++ R + SP P F I GI
Sbjct: 299 -----PIGGHIIAHASTTRLSLRKGRNESRVCKIYDSPCLPEGEAVFAITNDGID 348
>gi|157965115|gb|ABW06618.1| DNA repair protein RAD51 [Buddenbrockia plumatellae]
Length = 254
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 28/245 (11%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T K LD L GG+ G +TEL G TGK+Q C +L + LP GG +G +YI
Sbjct: 27 QISTGSKELDKLLQGGIETGSITELFGEFRTGKSQLCHQLCITCQLPVDCGGAEGKALYI 86
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E TF R++ + + + G Q+ + + + T+ L + + +
Sbjct: 87 DTEGTFRPERLL-----AAAQRYGLNG--QQALDNVACARAYNTDHQTQLLCQAAAMMAE 139
Query: 203 NQVKLLVIDSMEALVP---GVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ LLV+DS AL G + AP Q L+ + L+ +A+ + +V+TNQV Q
Sbjct: 140 SRYALLVVDSATALYRTDYGGRSELAPRQMHLAKFLRLLLRIADEFGVAVVITNQVVAQV 199
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
D + L+ +K V G AHA T RL + G+ R +
Sbjct: 200 -DNASLFQADSKK----------------PVGGHIIAHASTTRLYFKKGKGENRICKIYD 242
Query: 319 SPTSP 323
SP P
Sbjct: 243 SPXLP 247
>gi|118355624|ref|XP_001011071.1| DNA repair protein RAD51 containing protein [Tetrahymena
thermophila]
gi|3237383|gb|AAC39117.1| Rad51 [Tetrahymena thermophila]
gi|89292838|gb|EAR90826.1| DNA repair protein RAD51 containing protein [Tetrahymena
thermophila SB210]
Length = 331
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/320 (27%), Positives = 134/320 (41%), Gaps = 49/320 (15%)
Query: 26 TAKDAL----SLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLG 81
TAK L +TE ++ K+LDV +++V FQTA +R + +L
Sbjct: 47 TAKKNLLQIKGMTEAKIDKILDV-----------AAKLVPNDFQTAAEYYVKRQSVINL- 94
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
T LD L GG G +TE+ G TGKTQ C L + LP GG +G +Y
Sbjct: 95 ---TTGSTELDKLLGGGFETGSLTEIFGEFRTGKTQICHTLCITCQLPKEKGGGEGKAMY 151
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSL 200
ID E TF R+ S E F G+ QE + + + + + L + +
Sbjct: 152 IDTEGTFRPERL-----ESIAERF---GLDPQECMENVAYARAFNCDQQNKLLVQAAALM 203
Query: 201 LQNQVKLLVIDSMEALVPGVHEQRAP---GQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257
+++ LL++DS AL + R Q+ L + + LA+ I +V+TNQV
Sbjct: 204 AESKYALLIVDSATALYRTDYSGRGELSVRQNHLGKFLRNLQRLADEFGIAVVITNQVMS 263
Query: 258 QSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNV 316
Q D + ++ ++K + G AHA T RL L G+ R +
Sbjct: 264 QV-DGAAMFAGDMKK----------------PIGGNIMAHASTTRLYLRKGRGESRICKI 306
Query: 317 EKSPTSPPLAFSFTINPSGI 336
SP P + I GI
Sbjct: 307 YDSPCLPESEAIYAIGKGGI 326
>gi|440295416|gb|ELP88329.1| DNA repair protein rad51, putative [Entamoeba invadens IP1]
Length = 357
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 112/256 (43%), Gaps = 27/256 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG G +TEL G TGKTQ C +L + + L GG +G +YID E TF
Sbjct: 125 LDKLLHGGFETGSITELFGEFRTGKTQLCHQLCVTSQLSIEDGGTEGRAMYIDTEGTFRP 184
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+ ++ E + A+E ++V + + L+ + +++ L++I
Sbjct: 185 ERLTQI-----AERYSLN--AEEALNNVVVARAHNTEHQMSLLQAASAMMSKDRYGLIII 237
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
DS AL + R A Q L+ + + +A+ + +V+TNQV Q ++ ++
Sbjct: 238 DSATALYRTDYSGRGELAARQMHLAKFLRSLQRMADEFSVAVVLTNQVVAQVDGQASMFG 297
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLA 326
+K V G AHA T RL L+ G+ R V SP P
Sbjct: 298 GDNKK----------------PVGGNIIAHASTTRLYLKKGKGESRICKVYDSPCLPESE 341
Query: 327 FSFTINPSGISLLTDD 342
+F+I GI + D
Sbjct: 342 AAFSITDGGIGDVEGD 357
>gi|2921500|gb|AAC04805.1| XRCC3 [Homo sapiens]
gi|15079849|gb|AAH11725.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Homo sapiens]
Length = 346
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 152/348 (43%), Gaps = 43/348 (12%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 10 PRIIAAIKKAK-LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALQL 68
Query: 71 MEQ--RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
+Q R T+H L LDA L GG+P +TEL G + GKTQ L+L L
Sbjct: 69 HQQKERFPTQH--QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQF 126
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILVLQ 182
P +GGL+ G +YI E F +R+ ++ A + P K +I +
Sbjct: 127 PRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQK---LRFGSQIFIEH 183
Query: 183 PTSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITS 240
+ E + +K+ V L + +L+VIDS+ A P E + P + H+ SL
Sbjct: 184 VADVDTLLECVNKKVPVLLSRGMARLVVIDSVAA--PFRCEFDSQASAPRARHLQSLGAM 241
Query: 241 LAEFS---RIPIVVTNQVRPQSHDESCLY-PFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
L E S + P++ NQV ++ + P + + LG WA
Sbjct: 242 LRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGF------------WDERVSPALGITWA 289
Query: 297 HAVTIRLVL------EAKSG--QRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +RL+ EA G R + V +P PP + S+TI+ G+
Sbjct: 290 NQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|408381004|ref|ZP_11178554.1| DNA repair and recombination protein RadA [Methanobacterium
formicicum DSM 3637]
gi|407816269|gb|EKF86831.1| DNA repair and recombination protein RadA [Methanobacterium
formicicum DSM 3637]
Length = 311
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 127/281 (45%), Gaps = 42/281 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TAL +ME+R GH+ T GLD + GG+ +TE+ G G+GK+Q +++
Sbjct: 63 FETALDVMERRKDV----GHIITGSTGLDELIGGGIETQAITEVFGEFGSGKSQISHEIA 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGL G ++ID E+TF R+ ++ ++ E+ G+I + +
Sbjct: 119 VTVQLPPEKGGLCGECVFIDTENTFRPERIKQIAEGFTLDV-------DEVLGKIHIARA 171
Query: 184 TSLSEFTESLEKIKVSLLQN--QVKLLVIDSMEALVPGVH---EQRAPGQHPLSWHISLI 238
+ S +K+ L+Q ++L+++DS+ + + E A Q L+ H+ +
Sbjct: 172 FNSSHQILMADKVN-ELIQKGVNIRLVIVDSLTSHFRAEYVGRESLATRQQKLNQHLHTL 230
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
++A + + VTNQV RP + + S A+ G
Sbjct: 231 QNIANTYNVAVFVTNQVQARPDAF----------------------FGSPTKAIGGHVLG 268
Query: 297 HAVTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HA T R+ L+ +G+R + SP P F + GI
Sbjct: 269 HASTYRIWLKKGLAGKRIARLVDSPHLPEGEAVFKVVTEGI 309
>gi|403356083|gb|EJY77631.1| hypothetical protein OXYTRI_00735 [Oxytricha trifallax]
Length = 256
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 119/279 (42%), Gaps = 34/279 (12%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
FQTA +EQR L T KGLD L GG+ G +TE+ G TGKTQ C L
Sbjct: 3 FQTAGTYLEQRKDLVFL----STGSKGLDTLLGGGMETGSITEIFGEFRTGKTQICHTLC 58
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQ 182
+ LP GG G +YID E TF R+I I G+ Q++ + +
Sbjct: 59 VTCQLPVSQGGGAGMAMYIDTEGTFRPERLI--------PIAKRYGLDEQKVLDNVAYAR 110
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLIT 239
+ + + L + + +++ LL++DS AL + R + Q L+ + +
Sbjct: 111 AHNTDQQNKLLMQAAALMCESRFALLIVDSATALYRTDYSGRGELSARQMSLAKFLRQLQ 170
Query: 240 SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAV 299
LA+ + +V+TNQV Q D + ++ +K + G AHA
Sbjct: 171 RLADEFGVAVVITNQVVAQV-DGASMFAADSKK----------------PIGGHIIAHAS 213
Query: 300 TIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
T RL L + ++ R + SP P F I GI
Sbjct: 214 TTRLSLRKGRNESRVCKIYDSPCLPEGEAVFAITNDGID 252
>gi|156097941|ref|XP_001615003.1| meiotic recombination protein DMC1-like protein [Plasmodium vivax
Sal-1]
gi|148803877|gb|EDL45276.1| meiotic recombination protein DMC1-like protein, putative
[Plasmodium vivax]
Length = 347
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 133/323 (41%), Gaps = 47/323 (14%)
Query: 31 LSLTELELMKLLDVELSEVRSALALVSEI-VCPPFQTALLLMEQRAATEHLGGHLPTRLK 89
+ T+ EL + + ++V L + S+I C F TA L+ +R+ + T
Sbjct: 60 IQTTKKELCNVKGISEAKVEKILEVASKIENCSGFITAHQLVHKRSKVLKI----TTGSS 115
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD L GG+ +TEL G GKTQ C L++ A LP GG +G V YID E TF
Sbjct: 116 TLDKTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSVGGGNGKVCYIDTEGTFR 175
Query: 150 SRRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
++ ++ G I +++ E ++L + + E
Sbjct: 176 PEKICKIAERYGIDGEDVLDNILYARAFTHEHLYQLLAVSAAKMCE-------------- 221
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
LLV+DS+ +L R + Q L+ +S+++ L E I +++TNQV
Sbjct: 222 EPFALLVVDSIISLFRVDFSGRGELSERQQKLNKTMSILSKLGEQFNIAVLITNQVMS-- 279
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEK 318
D F M + H++ HA T RL L + K QR V
Sbjct: 280 -DPGATMTFIANPMKPV-------GGHVI-------GHASTTRLSLRKGKGDQRVCKVYD 324
Query: 319 SPTSPPLAFSFTINPSGISLLTD 341
+P P + F ++ G+ TD
Sbjct: 325 APNLPEVDCIFQLSDGGVIDATD 347
>gi|52549421|gb|AAU83270.1| recombinase [uncultured archaeon GZfos27B6]
Length = 315
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 119/284 (41%), Gaps = 42/284 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F T ++E+R + G L T K D L GG+ +TE G G+GKTQ +L+
Sbjct: 63 FVTGEKILERRQSV----GKLTTGSKSFDELLGGGLETQAMTEFYGEFGSGKTQIAHQLA 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS---FPEIFHSKGMAQEMAGRILV 180
+ LP GGL+G I +D E+TF R+ +M + + ++ + +A+ +
Sbjct: 119 VNVQLPPEKGGLNGSAIMVDTENTFRPERIKDMAEGAELDYEDVLKNIHVARAYNSNHQI 178
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISL 237
L E E L+ + V+L++IDS A + R A Q ++ H+
Sbjct: 179 LLVEKAKEIAEDLKDT-----EKPVRLMIIDSATAHFRSEYVGRGTLADRQQKINRHLHD 233
Query: 238 ITSLAEFSRIPIVVTNQ--VRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAVLGFH 294
A+ + I++TNQ VRP D D TR HIV
Sbjct: 234 ALRFADLNNAVIMITNQVMVRP----------------DAFFGDPTRPIGGHIV------ 271
Query: 295 WAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
H T R+ L G+ R + SP P F+++ +GI
Sbjct: 272 -GHTATFRIYLRKSKGEKRIAKLVDSPNLPEAEAVFSVSKAGIG 314
>gi|402877292|ref|XP_003902365.1| PREDICTED: DNA repair protein XRCC3 [Papio anubis]
Length = 346
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 150/346 (43%), Gaps = 39/346 (11%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 10 PRIIAAIKKAK-LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALHL 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+Q+ L LD+ LCGG+P +TEL G + GKTQ L+L L P
Sbjct: 69 HQQKERFPAQHQRLSLGCPVLDSLLCGGLPLDGITELAGRSSVGKTQLALQLCLAVQFPR 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILVLQPT 184
+GGL+ G +YI E F +R+ ++ A + P K +I +
Sbjct: 129 QHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQK---LRFGSQIFIEHVA 185
Query: 185 SLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITSLA 242
+ E + +K+ V L + +L+VIDS+ A P E + P + + SL +L
Sbjct: 186 DVDTLLECVNKKVPVLLSRGMARLVVIDSVAA--PFRCEFDSQASAPRARRLQSLGAALR 243
Query: 243 EFS---RIPIVVTNQVRPQSHDESCLY-PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
E S + P++ NQV ++S + P + LG WA+
Sbjct: 244 ELSSAFQSPVLCINQVTEAMEEQSAAHGPLGF------------WDERASPALGITWANQ 291
Query: 299 VTIRLVLE-------AKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
+ +RL+ E A G R + V +P PP + S+TI+ G+
Sbjct: 292 LLVRLLAERLREEEAALGGPARTLRVLFAPHLPPSSCSYTISAEGV 337
>gi|308810088|ref|XP_003082353.1| RAD51-like protein 2 (ISS) [Ostreococcus tauri]
gi|116060821|emb|CAL57299.1| RAD51-like protein 2 (ISS) [Ostreococcus tauri]
Length = 570
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 121/276 (43%), Gaps = 49/276 (17%)
Query: 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145
T + LD L GG+ G +TE G G GKTQ C ++ + A+ P +GG DG +Y+D E
Sbjct: 103 TCCEALDDVLDGGIGSGEITEFCGCPGVGKTQMCTQVCVSASTPEAFGGTDGEAVYVDTE 162
Query: 146 STFTSRRMIEMGASSFPEIFHSKGM---------------------AQEMAGRILVLQPT 184
+F + R +++ AS+ E H + M A+++ I + +
Sbjct: 163 GSFMADRAMDV-ASALVE--HLRRMEACESDSERRTEMKAALEGYTAEKILSGIHLFRCH 219
Query: 185 SLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAE 243
++E LE + + ++ +V+L+VIDS+ + A LS + + S+A
Sbjct: 220 EVTELLAVLETLGEFIAEHPRVRLVVIDSVAFHFRQDFQDMALRTTILSKMTNRLMSIAT 279
Query: 244 FSRIPIVVTNQ--VRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTI 301
+ +V NQ V+PQ + L P LG +AHA T
Sbjct: 280 SRDVAVVTVNQVTVKPQQDGPARLVP----------------------ALGESYAHACTT 317
Query: 302 RLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
R++L ++ +R V KSP P +TI +S
Sbjct: 318 RVILSWENDERVAFVTKSPRLPQAKAKYTITAGEMS 353
>gi|328875049|gb|EGG23414.1| putative DNA repair protein [Dictyostelium fasciculatum]
Length = 359
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 115/272 (42%), Gaps = 45/272 (16%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
HL T K LD L GG G +TEL G TGKTQ C L + L + GG +G +YI
Sbjct: 121 HLTTGSKELDNLLDGGFEAGSITELFGEFRTGKTQICHTLCVTCQLSINQGGGEGRALYI 180
Query: 143 DVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK 195
D E TF R++E+ G S + +++ + ++LV +SE
Sbjct: 181 DTEGTFRPERLLEIAERFGLDGESVLNNVAYARAYNTDHQLQLLVQASAMMSE------- 233
Query: 196 IKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
++ LL++DS AL + R + Q L+ + + LA+ I +++T
Sbjct: 234 -------SRYSLLIVDSATALYRTDYSGRSELSDRQRHLARFLRGLQRLADEFGIVVIIT 286
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH-WAHAVTIRLVLEAKSGQ 311
NQV D + + ++ + +G H AHA T RL L G+
Sbjct: 287 NQVVATV-------------------DGSVFNANPIKPIGGHIIAHASTTRLSLRKGKGE 327
Query: 312 -RFMNVEKSPTSPPLAFSFTINPSGISLLTDD 342
R V SP+ P F I GI + D+
Sbjct: 328 NRICKVYDSPSLPEEEKQFAIYGYGIGDIKDE 359
>gi|288559373|ref|YP_003422859.1| DNA repair and recombination protein RadA [Methanobrevibacter
ruminantium M1]
gi|288542083|gb|ADC45967.1| DNA repair and recombination protein RadA [Methanobrevibacter
ruminantium M1]
Length = 311
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 127/282 (45%), Gaps = 44/282 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA +ME+R G + T K +D + GG+ +TE+ G G+GK+Q +L+
Sbjct: 63 FETAFDVMERRRDV----GRITTGSKNVDELIGGGIETQSITEVFGEFGSGKSQISHELA 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQ 182
+ LP GGL+G ++ID E+TF R+ +I + G+ +E A RI + +
Sbjct: 119 VTVQLPKERGGLEGECVFIDTENTFRPERI--------EQIADACGIDREEALQRIHIAR 170
Query: 183 PTSLSEFTESLEKIKVSLLQN--QVKLLVIDSMEALVPGVH---EQRAPGQHPLSWHISL 237
+ S EKI L+Q+ V+L+++DS+ A + E A Q L+ H+
Sbjct: 171 AFNSSHQILMAEKIN-ELIQSGVNVRLVIVDSLMAHFRAEYVGRESLATRQQKLNQHLHA 229
Query: 238 ITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHW 295
+ +A + + +TNQV RP + + S A+ G
Sbjct: 230 LQQIANTYNVAVFLTNQVQARPDAF----------------------FGSPTKAIGGHVL 267
Query: 296 AHAVTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HA T R+ L+ +G+R + SP P F + GI
Sbjct: 268 GHASTYRIWLKKGLAGKRIARLVDSPHLPEGEAVFKVTTDGI 309
>gi|449280658|gb|EMC87894.1| DNA repair protein XRCC3 [Columba livia]
Length = 347
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 149/351 (42%), Gaps = 43/351 (12%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
PK IA + A +I + K+ L+L+ +L +L+ + ++++ L VS + TAL L
Sbjct: 10 PKVIAALKKA-DIKSIKEILNLSGADLQRLMKLSSADIQCLLKTVSLTLRRNSMLTALQL 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+ + L LDA L GG+P +TEL G + GKTQ L+L L P
Sbjct: 69 YQDKDHLTSQQQKLSLGCSVLDALLKGGIPLVGITELAGESSAGKTQIGLQLCLCVQYPY 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIE-------MGASSFPEIFHSKGMAQEMAGRILVLQP 183
YGGL+ G +YI E F S+R+ + + A EI + I V
Sbjct: 129 KYGGLESGAVYICTEDVFPSKRLQQLIDQQHKLRADVPAEIIQKI----KFGNGIFVEHA 184
Query: 184 TSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVP---GVHEQRAPGQHPLSWHISLIT 239
L F + +I + L + V+L+VIDS+ AL G + ++ ++ L
Sbjct: 185 ADLETFHNCITNRISLLLARGMVRLVVIDSIAALFRCEFGASDSVTKARYLQTFGAQL-H 243
Query: 240 SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAV 299
SL+ R PI+ NQV + ES +D + + LG WA+ +
Sbjct: 244 SLSMRFRTPIMCINQV-TDAVSESEAAQCGCSAVD----------NRVSPALGITWANQL 292
Query: 300 TIRLVLEAKS--------------GQRFMNVEKSPTSPPLAFSFTINPSGI 336
+RL++ S R + V +P PP +T+ G+
Sbjct: 293 LMRLMVNRLSPPEQSSALVSHHSGSVRTLRVVFAPHLPPSFCYYTVKLEGV 343
>gi|221053592|ref|XP_002258170.1| Meiotic recombination protein DMC1-like protein [Plasmodium
knowlesi strain H]
gi|193808003|emb|CAQ38707.1| Meiotic recombination protein DMC1-like protein,putative
[Plasmodium knowlesi strain H]
Length = 347
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 131/320 (40%), Gaps = 47/320 (14%)
Query: 34 TELELMKLLDVELSEVRSALALVSEI-VCPPFQTALLLMEQRAATEHLGGHLPTRLKGLD 92
T+ EL + + ++V L + S+I C F TA L +R+ + T LD
Sbjct: 63 TKKELCNVKGISEAKVEKILEVASKIENCSSFITANQLAHKRSKVLKI----TTGSSSLD 118
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
L GG+ +TEL G GKTQ C L++ A LP GG +G V YID E TF +
Sbjct: 119 RTLGGGIESMSITELFGENRCGKTQICHTLAVSAQLPRSAGGGNGKVCYIDTEGTFRPEK 178
Query: 153 MIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQV 205
+ ++ G I +++ E ++L + + E
Sbjct: 179 ICKIAERYGIDGEDVLDNILYARAFTHEHLYQLLAVSAAKMCE--------------EPF 224
Query: 206 KLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDE 262
LLV+DS+ +L R + Q L+ +S+++ L E I +++TNQV D
Sbjct: 225 ALLVVDSIISLFRVDFSGRGELSERQQKLNKTLSVLSKLGEQFNIAVLITNQVMS---DP 281
Query: 263 SCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPT 321
F M + H++ HA T RL L + K QR V +P
Sbjct: 282 GATMTFVANPMKPV-------GGHVI-------GHASTTRLSLRKGKGDQRVCKVYDAPN 327
Query: 322 SPPLAFSFTINPSGISLLTD 341
P + F ++ G+ TD
Sbjct: 328 LPEVDCIFQLSEGGVIDATD 347
>gi|320170723|gb|EFW47622.1| Rad51 protein [Capsaspora owczarzaki ATCC 30864]
Length = 337
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 112/264 (42%), Gaps = 42/264 (15%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD L GG G +TE+ G TGKTQ C L++ LP GG +G +YID E TF
Sbjct: 105 KELDKLLQGGFETGAITEIFGEFRTGKTQICHTLAVTCQLPTSQGGGEGKCLYIDTEGTF 164
Query: 149 TSRRMI---EMGASSFPEIFHSKGMAQEMAGR---ILVLQPTSLSEFTESLEKIKVSLLQ 202
R++ E S P++ + A+ L++Q +++ + +
Sbjct: 165 RPERLLAAAERYGLSGPDVLDNVAYARAYNTDHQLALLMQASAM-------------MAE 211
Query: 203 NQVKLLVIDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
++ LL++DS AL G E A H + SL+ EF I +VVTNQV Q
Sbjct: 212 SRYALLIVDSATALYRTDYSGRGELSARQMHLAKFMRSLLRLADEFG-IAVVVTNQVVAQ 270
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVE 317
D ++ +K + G AHA T RL L + ++ R +
Sbjct: 271 V-DGGAMFAADPKK----------------PIGGNIMAHASTTRLYLRKGRAETRICKIY 313
Query: 318 KSPTSPPLAFSFTINPSGISLLTD 341
SP+ P F IN GI D
Sbjct: 314 DSPSLPEAEAVFAINADGIGDAKD 337
>gi|356565616|ref|XP_003551035.1| PREDICTED: DNA repair protein RAD51 homolog [Glycine max]
Length = 343
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 144/346 (41%), Gaps = 56/346 (16%)
Query: 16 ANIFAARNITTAKDALSLT--------ELELMKLLDVELSEVRSALALVSEIVCPPFQTA 67
A+ AA ++ KDA T +L+++ + ++V + S++V F +A
Sbjct: 34 ASGIAATDVKKLKDAGICTVESVAYTPRKDLLQIKGISEAKVDKIIEAASKLVPMGFTSA 93
Query: 68 LLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAA 127
L QR A + T LD L GGV G +TEL G +GKTQ C L +
Sbjct: 94 SELHAQRDAIIQI----TTGSTELDKILEGGVETGSITELYGEFRSGKTQLCHTLCVTCQ 149
Query: 128 LPAHYGGLDGGVIYIDVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILV 180
LP GG +G +YID E TF +R++++ GA + +++ + R+L
Sbjct: 150 LPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL- 208
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHIS 236
L+ S+ +++ + ++++DS AL G E A H L+ +
Sbjct: 209 LEAASM-------------MVETRFAVMIVDSATALYRTDFSGRGELSARQMH-LAKFLR 254
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+ LA+ + IV+TNQV Q + Q++ + G A
Sbjct: 255 SLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQIKPIG-----------------GNIMA 297
Query: 297 HAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
HA T RL L G +R V SP F I G+S + D
Sbjct: 298 HATTTRLALRKGRGEERICKVISSPCLAEAEARFQICAEGVSDVKD 343
>gi|363741358|ref|XP_415870.3| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD51 homolog 3
[Gallus gallus]
Length = 366
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 129/306 (42%), Gaps = 53/306 (17%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+E+ E G + T LD L GGV +TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEE----EQTQGFIITFCSALDNILGGGVQLTKITEICGAPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ--EMAGRILVLQP 183
+P +GG+ G ++ID E +F R ++ + + H + +A+ + + L+
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRAADIATAC---VRHCQLIAEAHQEEDHLQALET 189
Query: 184 TSLSEFTESLEKIK----------VSLL------QNQVKLLVIDSMEALVPGVHEQRAPG 227
SL + + V LL ++V+L+VID + P H+
Sbjct: 190 FSLESILSHIYYFRCRDYIELLAQVYLLPDFLSEHSKVRLVVIDGIA--FPFRHD----- 242
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHI 287
LS L+ LA+ I++ N D Q R +++ S +
Sbjct: 243 FEDLSLRTRLLNGLAQ---QLIIIAN-------DHKSAVVLTNQMTTRFGQNQ----SML 288
Query: 288 VAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLL-------T 340
V LG W HA T+RL+ + QR + KSP+ + I P G +
Sbjct: 289 VPALGESWGHAATVRLIFHWDNTQRLATLYKSPSQKESTIPYNITPQGFRDVQPPPVTQN 348
Query: 341 DDGTEM 346
+GTEM
Sbjct: 349 AEGTEM 354
>gi|222154117|gb|ACM47238.1| RAD51 recombination protein [Triticum aestivum]
Length = 343
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + T + LD L
Sbjct: 63 DLLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQV----TTGSRELDKILE 118
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 119 GGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 178
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L+V
Sbjct: 179 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MVETRFALMV 224
Query: 210 IDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
IDS AL G E A H L+ + + LA+ + +V++NQV Q +
Sbjct: 225 IDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVISNQVVAQVDGGAMF 283
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPP 324
Q++ + G AHA T RL L + ++ +R V SP
Sbjct: 284 AGPQIKPIG-----------------GNIMAHASTTRLYLRKGRAEERICKVVSSPCLAE 326
Query: 325 LAFSFTINPSGISLLTD 341
F I+P G++ + D
Sbjct: 327 AEARFQISPEGVTDVKD 343
>gi|403284072|ref|XP_003933408.1| PREDICTED: DNA repair protein XRCC3 [Saimiri boliviensis
boliviensis]
Length = 367
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 150/347 (43%), Gaps = 41/347 (11%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 31 PRIIAAIKKAK-LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALHL 89
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+Q+ L LDA L GG+P +TEL G + GKTQ L+L L P
Sbjct: 90 CQQKERFPAQHQRLSLGCPVLDALLRGGLPLDGITELAGHSSAGKTQLALQLCLAVQFPR 149
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAG----------RILV 180
+GGL+ G +YI E F +R+ ++ A H + ++ G +I +
Sbjct: 150 QHGGLEAGAVYICTEDAFPHKRLQQLMA-------HQPRLRTDVPGELLQKLRFGSQIFI 202
Query: 181 LQPTSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA--PGQHPLSWHISL 237
+ E + +K+ V L + +L+VIDS+ A + +A P L +
Sbjct: 203 EHAADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASIPRARCLQSLGAT 262
Query: 238 ITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAH 297
+ L+ + P++ NQV ++S ++ + I LG WA+
Sbjct: 263 LRELSSAFQSPVLCINQVTEAVEEQSTVH-----------GPPGFWDERISPALGITWAN 311
Query: 298 AVTIRLVL------EAKSGQ--RFMNVEKSPTSPPLAFSFTINPSGI 336
+ +RL+ EA GQ R + V +P PP + S+T++ G+
Sbjct: 312 QLLVRLLADRLREEEAALGQPVRTLRVLFAPHLPPSSCSYTVSTEGV 358
>gi|440798730|gb|ELR19797.1| DNA repair protein RAD51, putative [Acanthamoeba castellanii str.
Neff]
Length = 342
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 132/308 (42%), Gaps = 31/308 (10%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T+ L+ + V ++ LA +++V F TA +QRA + T K LD
Sbjct: 58 TKKALIAVKGVSDTKADKILAEAAKLVPMGFTTATEFQKQRAEIIQV----TTGSKELDK 113
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L G+ G +TE+ G TGKTQ C +L + LP GG +G +Y+D E TF +R+
Sbjct: 114 LLENGIETGSITEIFGEFRTGKTQLCHQLCVTCQLPLDQGGGEGKALYVDTEGTFRPQRL 173
Query: 154 IEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM 213
+ + E + G ++ + + + + L + + +++ +L++DS
Sbjct: 174 L-----AIAERYGLNG--DDVLDNVAYARAYNSDHQMQLLAQASAMMSESRYAMLIVDSA 226
Query: 214 EALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQV 270
AL + R + Q L+ + + LA+ + +V+TNQV Q + ++
Sbjct: 227 TALYRTDYSGRGELSARQMHLARFLRTLQRLADEFGVAVVITNQVVAQVDGNAAMFGADP 286
Query: 271 QKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSF 329
+K + G AHA T RL L + ++ R + SP P F
Sbjct: 287 KK----------------PIGGNIMAHASTTRLYLRKGRAETRICKIYDSPCLPEAEAVF 330
Query: 330 TINPSGIS 337
IN GI
Sbjct: 331 AINADGIG 338
>gi|197092359|gb|ACH42252.1| RAD51A recombination protein [Triticum aestivum]
gi|222154121|gb|ACM47240.1| RAD51 recombination protein [Triticum aestivum]
Length = 342
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + T + LD L
Sbjct: 62 DLLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQV----TTGSRELDKILE 117
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 118 GGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 177
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L+V
Sbjct: 178 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MVETRFALMV 223
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
IDS AL G E A H L+ + + LA+ + +V++NQV Q +
Sbjct: 224 IDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVISNQVVAQVDGGAMF 282
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPP 324
Q++ + G AHA T RL L + ++ +R V SP
Sbjct: 283 AGPQIKPIG-----------------GNIMAHASTTRLYLRKGRAEERICKVVSSPCLAE 325
Query: 325 LAFSFTINPSGISLLTD 341
F I+P G++ + D
Sbjct: 326 AEARFQISPEGVTDVKD 342
>gi|355777947|gb|EHH62983.1| hypothetical protein EGM_15862 [Macaca fascicularis]
Length = 340
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 28/253 (11%)
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
A + GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R
Sbjct: 112 AGITGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER 171
Query: 153 MIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDS 212
++ + E + G ++ + + + T+ L + +++++ LL++DS
Sbjct: 172 LL-----AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDS 224
Query: 213 MEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQ 269
AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 225 ATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAAD 283
Query: 270 VQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFS 328
+K + G AHA T RL L G+ R + SP P
Sbjct: 284 PKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAM 327
Query: 329 FTINPSGISLLTD 341
F IN G+ D
Sbjct: 328 FAINADGVGDAKD 340
>gi|255581709|ref|XP_002531657.1| X-ray repair cross complementing protein 3, xrcc3, putative
[Ricinus communis]
gi|223528715|gb|EEF30727.1| X-ray repair cross complementing protein 3, xrcc3, putative
[Ricinus communis]
Length = 301
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 123/278 (44%), Gaps = 36/278 (12%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+P +TE+V +GTGKTQ CL+LSL A LP GGL +Y+ E F
Sbjct: 23 LDRCLNGGIPCNSITEIVAESGTGKTQLCLQLSLYAQLPLSLGGLSASSLYLHTEFPFPF 82
Query: 151 RRMIEMG---ASSFPEIFHSKGMAQEM------AGRILVLQPTSLSEFTESLEKIKVSLL 201
RR+ ++ S P+IF + + I V S + + KI+ L+
Sbjct: 83 RRLHQLSHSFQSQHPQIFINNNNNDTINNYDNPCDNIFVHSVRSADYLFDIMPKIESFLV 142
Query: 202 QNQ----VKLLVIDSMEALVPGVHEQRAPG---QHPLSWHISL-ITSLAEFSRIPIVVTN 253
++ V+L+VIDS+ AL E A + L + IS + +LA + +VV+N
Sbjct: 143 YSKTHLPVRLIVIDSVAALFRSEFENTATDLKRRSALFFKISAKLRALAWRFNLAVVVSN 202
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLE------- 306
QV L ++ + + R + LG WA+ V RL L
Sbjct: 203 QVVDFVGSGDGLNGARIGDLGSLYSSGRR----VCPALGLAWANCVNSRLFLSRDENGMV 258
Query: 307 --AKSG------QRFMNVEKSPTSPPLAFSFTINPSGI 336
A+SG +R ++V +P P + F I G+
Sbjct: 259 DGAESGSFCSQTRRRLHVVFAPHLPYSSCEFVIRREGV 296
>gi|115488638|ref|NP_001066806.1| Os12g0497300 [Oryza sativa Japonica Group]
gi|18874073|dbj|BAB85492.1| Rad51 [Oryza sativa Japonica Group]
gi|18874075|dbj|BAB85493.1| Rad51 [Oryza sativa Japonica Group]
gi|108862704|gb|ABA98592.2| DNA repair protein RAD51, putative, expressed [Oryza sativa
Japonica Group]
gi|113649313|dbj|BAF29825.1| Os12g0497300 [Oryza sativa Japonica Group]
Length = 341
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 137/317 (43%), Gaps = 49/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + T + LD L
Sbjct: 62 DLLQIKGISEAKVDKIIEGASKLVPLGFTSASQLHAQRLEIIQV----TTGSRELDKILD 117
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 118 GGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 177
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + +++
Sbjct: 178 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MVETRFAIMI 223
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H L+ + + LA+ + +V+TNQV Q +
Sbjct: 224 VDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVITNQVVAQVDGAAMF 282
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPP 324
P I + G AHA T RL L + ++ +R V SP
Sbjct: 283 GP------------------QIKPIGGNIMAHASTTRLFLRKGRAEERICKVVSSPCLAE 324
Query: 325 LAFSFTINPSGISLLTD 341
F I+P G++ + D
Sbjct: 325 AEARFQISPEGVTDVKD 341
>gi|336477843|ref|YP_004616984.1| DNA repair and recombination protein RadA [Methanosalsum zhilinae
DSM 4017]
gi|335931224|gb|AEH61765.1| DNA repair and recombination protein RadA [Methanosalsum zhilinae
DSM 4017]
Length = 325
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 117/273 (42%), Gaps = 42/273 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T +++++R L G L T + L GGV +TEL G G+GKTQ +L+
Sbjct: 66 FETGDMVLDRRK----LVGKLTTGCTEFNEMLGGGVETQSITELYGEFGSGKTQVAHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM--------GASSFPEIFHSK-GMAQEM 174
+ LP GGL+G VI ID E+TF R+ +M G PE F +A+
Sbjct: 122 VNVQLPKEKGGLNGSVIMIDTENTFRPERIAQMVDGLSQKHGEDYDPEEFLKHIHVARAY 181
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L S SE L+ + V+L ++DS+ A + R A Q L
Sbjct: 182 NSNHQILLSDSASELANELKNT-----ERPVRLFIVDSLTAHFRAEYVGRGTLADRQQKL 236
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
+ H+ + L + ++VTNQV + K D D T+ +
Sbjct: 237 NKHLHDLQRLGDLFNAAVIVTNQV--------------MSKPDAFFGDPTK------PIG 276
Query: 292 GFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSP 323
G H T RL L ++K +R + + SP P
Sbjct: 277 GHILGHTATFRLYLRKSKGDKRIVRLVDSPNLP 309
>gi|222154119|gb|ACM47239.1| RAD51 recombination protein [Triticum aestivum]
Length = 343
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + T + LD L
Sbjct: 63 DLLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQV----TTGSRELDRILE 118
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 119 GGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 178
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L+V
Sbjct: 179 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MVETRFALMV 224
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
IDS AL G E A H L+ + + LA+ + +V++NQV Q +
Sbjct: 225 IDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVISNQVVAQVDGGAMF 283
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPP 324
Q++ + G AHA T RL L + ++ +R V SP
Sbjct: 284 AGPQIKPIG-----------------GNIMAHASTTRLYLRKGRAEERICKVVSSPCLAE 326
Query: 325 LAFSFTINPSGISLLTD 341
F I+P G++ + D
Sbjct: 327 AEARFQISPEGVTDVKD 343
>gi|307171500|gb|EFN63341.1| DNA-repair protein XRCC3 [Camponotus floridanus]
Length = 253
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 118/258 (45%), Gaps = 26/258 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T LD L GG+P +T++ G AGTGKTQ L+L L LP GGL G IYI
Sbjct: 17 LTTGCSKLDIILKGGIPCRGITQIYGAAGTGKTQLALQLCLSVQLPVTAGGLGAGAIYIS 76
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E+ F S R+ ++ SS EI + + ++ I V ++ E L++ KV L N
Sbjct: 77 TETAFPSERLQQLLQSS--EIAKAHSVNGDV---IFVNHIATIDELELCLQR-KVPALMN 130
Query: 204 --QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISL-ITSLAEFSRIPIVVTNQVRPQSH 260
++ LLVIDS+ A V + + Q ++ + L + + + ++ NQV
Sbjct: 131 IHKIGLLVIDSIAAPYR-VEDWKDQLQGKSKRNVGRQLHELCKNNNLCVICINQVSAVID 189
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSP 320
S + +++ VLGF W+ +T + ++ R+ + +
Sbjct: 190 SHSVISEDAIEQ----------------PVLGFTWSSMITSSIYFYRRNSARYACIMLAS 233
Query: 321 TSPPLAFSFTINPSGISL 338
P + F F ++ SG+ +
Sbjct: 234 HLPRITFQFIVSQSGVKV 251
>gi|430812090|emb|CCJ30489.1| unnamed protein product [Pneumocystis jirovecii]
Length = 664
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 16/158 (10%)
Query: 9 MRLPKSIANIFAARNITTAKD-ALS-LTELELMKLLDVELSE-----VRSALALVSEIV- 60
M L ++ N+F + D AL+ ++ L+L+ L +E+S V A L+ +V
Sbjct: 1 MDLWQTCPNMFCGNEMQIVFDRALARVSTLDLLTLDPIEISRKTSMTVMEAEELICRVVE 60
Query: 61 -CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
C P LL E++ L T + +D L GG+P G V E+ G +GTGK+QFC
Sbjct: 61 GCIPKVQKFLLEEEKQ-------FLTTGDRVIDGVLSGGIPLGHVIEIAGESGTGKSQFC 113
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157
++L L LP GGL+ G IYI E+ +++R+ EM
Sbjct: 114 MQLCLTVQLPRVLGGLERGAIYISTETGLSTKRLFEMA 151
>gi|47933423|gb|AAT39336.1| DNA repair protein RAD51 [Oikopleura dioica]
gi|313216997|emb|CBY38192.1| unnamed protein product [Oikopleura dioica]
gi|313229155|emb|CBY23740.1| unnamed protein product [Oikopleura dioica]
Length = 340
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 141/331 (42%), Gaps = 36/331 (10%)
Query: 13 KSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLME 72
KS N + TA+ T+ +L + ++ + L +IV F+TA
Sbjct: 35 KSDLNKLKTAGLHTAEQVSMCTKKDLCAIKGFSENKAMAILRQALKIVPMGFRTATDY-- 92
Query: 73 QRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHY 132
+A +E + + T K D L GGV G +TEL G TGK+Q C+ L++ A LP
Sbjct: 93 HKARSEMV--RITTGSKEFDRMLAGGVETGSITELFGEFRTGKSQLCMTLAVTAQLPVDL 150
Query: 133 GGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES 192
GG +G +YID E TF R++ + E + G +++ + V + S
Sbjct: 151 GGGEGKALYIDTEGTFRPERLL-----AISERYGLSG--KDVLDNVAVARAFSTDHQMTM 203
Query: 193 LEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPI 249
L + +++ ++++DS+ AL + R A Q L + + LA+ + I
Sbjct: 204 LHTCAAMMTESRYSIMIVDSIMALYRSDYSGRGELAARQMHLGKFLRGLLKLADTFGVAI 263
Query: 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS 309
V+TNQV V M ++ D V G AHA R+ ++
Sbjct: 264 VITNQVTA-----------NVDGM--MMGDNQ------TPVGGNILAHASCTRIKMKKGR 304
Query: 310 G-QRF--MNVEKSPTSPPLAFSFTINPSGIS 337
G RF + SP P +F I+P GI+
Sbjct: 305 GNNRFGTARIYDSPCLPDEQITFAISPGGIT 335
>gi|291410935|ref|XP_002721745.1| PREDICTED: X-ray repair cross complementing protein 3-like
[Oryctolagus cuniculus]
Length = 344
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 147/344 (42%), Gaps = 35/344 (10%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ I + A+ + +AK+ L + +L ++ + +VR L S + TAL L
Sbjct: 8 PRIITAVRRAK-LKSAKELLRFSGPDLQRVTGLSGPDVRHLLRAASLSLRGSSVLTALHL 66
Query: 71 MEQR----AATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126
+Q+ A + L P LD L GG+P +TEL GP GKTQ L+L L
Sbjct: 67 HQQKDRFPAQHQRLSLGCPV----LDGLLRGGLPLDGITELAGPGSAGKTQLALQLCLAV 122
Query: 127 ALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF---PEIFHSKGMAQEMAGRILVLQP 183
P +GGL G +YI E F +RR+ ++ + ++ + + +I V
Sbjct: 123 QFPRQHGGLQAGAVYICTEGAFPTRRLQQLIGQHWRLRADVARDEVGKIRFSSQIFVEHA 182
Query: 184 TSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA--PGQHPLSWHISLITS 240
+ E + K+ V L + +L+VIDS+ A + +A P L + +
Sbjct: 183 ADVDALLECVTRKVPVLLSRGMARLVVIDSVAAPFRCEFDAQASVPRARRLQALGAALRR 242
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
L+ + P++ NQV ++ Q R LG WA+ +
Sbjct: 243 LSHAFQSPVLCINQVTDTVEEQDTAPGLQGFGDTR-----------ASPALGTAWANQLL 291
Query: 301 IRLVLEAKSGQ--------RFMNVEKSPTSPPLAFSFTINPSGI 336
+RL+ + + G+ R + V SP PP + ++TI+ G+
Sbjct: 292 LRLMADRRRGEEAVLGGPARTLRVLFSPHLPPSSCAYTIHSEGV 335
>gi|114228441|gb|ABI58231.1| Rad51 protein [Oryza sativa Indica Group]
Length = 332
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 136/317 (42%), Gaps = 49/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + T + LD L
Sbjct: 53 DLLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQV----TTGSRELDKILD 108
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G +GKTQ C L + LP +GG +G +YID E TF +R +++
Sbjct: 109 GGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDHGGGEGKALYIDAEGTFRPQRFLQI 168
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L S+ +++ + +++
Sbjct: 169 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LGAASM-------------MVETRFAIMI 214
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H L+ + + LA+ + +V+TNQV Q +
Sbjct: 215 VDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVITNQVVAQVDGAAMF 273
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPP 324
P I + G AHA T RL L + ++ +R V SP
Sbjct: 274 GP------------------QIKPIGGNIMAHASTTRLFLRKGRAEERICKVVSSPCLAE 315
Query: 325 LAFSFTINPSGISLLTD 341
F I+P G++ + D
Sbjct: 316 AEARFQISPEGVTDVKD 332
>gi|219119366|ref|XP_002180445.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
CCAP 1055/1]
gi|217407918|gb|EEC47853.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
CCAP 1055/1]
Length = 350
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 135/321 (42%), Gaps = 44/321 (13%)
Query: 32 SLTELELMKLLDVE-LSEVRS-ALALVSEIVCP-PFQTALLLMEQRAATEHLGGHLPTRL 88
S+ + KL DV+ +SE + L +++ + P F+TA +E R A L T
Sbjct: 63 SIAHATIRKLSDVKGISEAKVLKLKEITKSMVPMDFKTAADALEDRKA-------LVTLT 115
Query: 89 KG---LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145
G LD L GGV G +TE+ G TGKTQ C L + + GG +G IYID E
Sbjct: 116 TGSIELDKLLEGGVETGSITEVFGEFRTGKTQLCHTLCVTCQMAVTEGGAEGKAIYIDTE 175
Query: 146 STFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL-QNQ 204
TF R+ + E F G+ +A + SE L K+ +++ Q++
Sbjct: 176 GTFRPNRL-----QAIAERF---GLDPTVALENVAYARAHNSEHQAELLKLAAAIMSQDR 227
Query: 205 VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHD 261
LLV+DS AL + R + Q ++ + +T LAE + + +TNQV
Sbjct: 228 YALLVVDSATALFRTDYTGRGELSERQMQMAQFLRQLTRLAEEFGVAVFITNQVVANPDG 287
Query: 262 ESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSP 320
S KD T+ + G AHA T RL L G R V SP
Sbjct: 288 MS------------FAKDSTK------PIGGNIMAHASTTRLRLRKGRGDNRICTVFDSP 329
Query: 321 TSPPLAFSFTINPSGISLLTD 341
T P F + G+ D
Sbjct: 330 TLPEADAQFAVGAQGVCDAQD 350
>gi|332376244|gb|AEE63262.1| unknown [Dendroctonus ponderosae]
Length = 257
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 29/249 (11%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+P + EL G +G GKTQ CL+L+L LP H GG V+YI E F S
Sbjct: 32 LDGLLNGGIPVNGINELYGCSGVGKTQLCLQLALQIQLPVHLGGKGQEVVYICTEDVFPS 91
Query: 151 RRMIEMGASSFPEIFHSK-GMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
+R+I++ + F SK + RI + + + L + LL +V L++
Sbjct: 92 KRLIQLACA-----FRSKYNVDICFEDRIYIEHIPNFVRLQKCLNLLPQFLLGKKVGLII 146
Query: 210 IDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQ 269
IDS+ L R+ ++P + + EF+ + V+ E C F
Sbjct: 147 IDSIAGLF------RSDTENP-----NYVARSQEFTVLGKVLI------ELQEKC--KFG 187
Query: 270 VQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ--RFMNVEKSPTSPPLAF 327
+ +++++ + + + LG WA+ VT R L + R +V SP P
Sbjct: 188 ILTINQVVDNLSSGLTE--PSLGLSWANNVTSRFGLSRNNTDPIRRFDVIFSPDLAPSFS 245
Query: 328 SFTINPSGI 336
+ I P GI
Sbjct: 246 NLLITPEGI 254
>gi|440634655|gb|ELR04574.1| meiotic recombinase Dmc1 [Geomyces destructans 20631-21]
Length = 344
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 113/259 (43%), Gaps = 29/259 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG ++E+ G GKTQ C ++++A LP GG +G V +ID
Sbjct: 105 ISTGSKQLDTILLGGFETMSISEIYGEFRCGKTQICHTMAVMAQLPREMGGAEGKVAWID 164
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT-ESLEKIKVSLLQ 202
E TF R+ ++ A F G+ E A + + + SE E L+ + +
Sbjct: 165 TEGTFRPERIAQI-AERF-------GVDPEQACDNICVSRSLNSEHQYELLDVLAFNFCS 216
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ +LLVIDS+ AL + R A Q L + + +LAE + +V+TNQV+
Sbjct: 217 GEYRLLVIDSVMALFRTDYSGRGELAERQQALGQFLKRLAALAEEFNVCVVMTNQVQSDP 276
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
+ +K V G AHA T R++L G +R +
Sbjct: 277 GASALFAGTDGRK----------------PVGGHVLAHASTTRVLLRKGRGEERVAKIID 320
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP P ++ I GIS
Sbjct: 321 SPNCPEREATYIITNGGIS 339
>gi|224127362|ref|XP_002320055.1| predicted protein [Populus trichocarpa]
gi|222860828|gb|EEE98370.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 116/282 (41%), Gaps = 39/282 (13%)
Query: 69 LLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
LL E+R+ L L T LD L GG+ VTE+ G G GKTQ ++L++ +
Sbjct: 14 LLHEERS----LMTRLTTSCADLDDILGGGISCKQVTEIGGVPGIGKTQLGIQLAVNVQM 69
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGM----AQEMAGRIL---VL 181
P+ GGL G IYID E +F R E+ + +I K +Q G I VL
Sbjct: 70 PSFCGGLGGKAIYIDTEGSFMGERAQEIAEACVEDISEYKRFLHKDSQACQGEIQGKDVL 129
Query: 182 QPTSLSEFTESLEKIK-VSLLQ------NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWH 234
Q E+I ++ L+ VK+++IDS+ E A L
Sbjct: 130 QNIYFFRICSYTEQIALINYLEEFISDHKDVKIVIIDSVAFHFRQGFEDLALRTRILGEM 189
Query: 235 ISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
+ LA+ + +V+ NQV + + S F LG
Sbjct: 190 ALKLVKLAKMCNLAVVLLNQVTTRYMEGSFQLSFS---------------------LGDR 228
Query: 295 WAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
W+ T R++L +R+ ++KSP P A +++ GI
Sbjct: 229 WSRCCTNRIILYWNRNERYAYIDKSPYLRPAAAPYSVTGRGI 270
>gi|400202049|gb|AFP73608.1| DNA repair protein RAD51 [Hordeum vulgare subsp. vulgare]
Length = 343
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 137/317 (43%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + T + LD L
Sbjct: 63 DLLQIKGISEAKVDKIMEAASKLVPLGFTSATQLHAQRLEIIQV----TTGSRELDRILD 118
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 119 GGIETGSITELYGEFRCGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 178
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L+V
Sbjct: 179 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MVETRFALMV 224
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
IDS AL G E A H L+ + + LA+ + +V++NQV Q +
Sbjct: 225 IDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVISNQVVAQVDGGAMF 283
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPP 324
Q++ + G AHA T RL L + ++ +R V SP
Sbjct: 284 AGPQIKPIG-----------------GNIMAHASTTRLYLRKGRAEERICKVVSSPCLAE 326
Query: 325 LAFSFTINPSGISLLTD 341
F I+P G++ + D
Sbjct: 327 AEARFQISPEGVTDVKD 343
>gi|356547988|ref|XP_003542386.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Glycine max]
Length = 344
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 144/346 (41%), Gaps = 56/346 (16%)
Query: 16 ANIFAARNITTAKDALSLT--------ELELMKLLDVELSEVRSALALVSEIVCPPFQTA 67
A+ AA ++ KDA T +L+++ + ++V + S++V F +A
Sbjct: 35 ASGIAATDVKKLKDAGICTVESVAYTPRKDLLQIKGISEAKVDKIIEAASKLVPMGFTSA 94
Query: 68 LLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAA 127
L QR A + T + LD L GGV G +TEL G +GKTQ C L +
Sbjct: 95 SELHAQRDAIIQI----TTGSRELDKILEGGVETGSITELYGEFRSGKTQLCHTLCVTCQ 150
Query: 128 LPAHYGGLDGGVIYIDVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILV 180
LP GG +G +YID E TF +R++++ G + +++ + R+L
Sbjct: 151 LPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGVDVLENVAYARAYNTDHQSRLL- 209
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHIS 236
L+ S+ +++ + ++++DS AL G E A H L+ +
Sbjct: 210 LEAASM-------------MVETRFAVMIVDSATALYRTDFSGRGELSARQMH-LAKFLR 255
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+ LA+ + IV+TNQV Q + Q++ + G A
Sbjct: 256 SLQKLADEFGVAIVITNQVVSQVDGSAVFAGPQIKPIG-----------------GNIMA 298
Query: 297 HAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
HA T RL L G +R V SP F I G+S + D
Sbjct: 299 HATTTRLALRKGRGEERICKVISSPCLAEAEARFQICAEGVSDVKD 344
>gi|157112162|ref|XP_001657421.1| DNA repair protein rad51 [Aedes aegypti]
gi|108878168|gb|EAT42393.1| AAEL006080-PA [Aedes aegypti]
Length = 341
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 113/266 (42%), Gaps = 42/266 (15%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
L T K LD L GG+ G +TEL G TGKTQ C L++ LP G +G +YI
Sbjct: 103 QLTTGSKELDKLLGGGIETGSITELFGEFRTGKTQICHTLAVTCQLPVSQNGGEGKCLYI 162
Query: 143 DVESTFTSRRMIE-------MGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK 195
D E TF R++ +G + +++ + ++LV Q +++
Sbjct: 163 DTEGTFRPERLLAVAERYKLVGTDVLDNVVYARAFNSDHQMKLLV-QASAM--------- 212
Query: 196 IKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVT 252
+++++ LL++DS AL + R Q L + ++ LA+ + +V+T
Sbjct: 213 ----MVESRYALLIVDSATALFRTDYSGRGELNARQVQLGKFLRMLLRLADEFGVAVVIT 268
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ- 311
NQV Q D + ++ +K + G AHA T RL L G+
Sbjct: 269 NQVVAQV-DAAAMFTPDPKK----------------PIGGHILAHASTTRLYLRKGRGET 311
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGIS 337
R + SP P + IN GI
Sbjct: 312 RICKIYDSPCLPESEAMYAINADGIG 337
>gi|449466133|ref|XP_004150781.1| PREDICTED: DNA repair protein XRCC3 homolog [Cucumis sativus]
gi|449506730|ref|XP_004162832.1| PREDICTED: DNA repair protein XRCC3 homolog [Cucumis sativus]
Length = 294
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 123/280 (43%), Gaps = 48/280 (17%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
+D ++ GGV +TE+V +G GKTQ CL+LSL A LP GGL+ +YI E F
Sbjct: 23 IDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQLPLSNGGLNASSLYIHTEFPFPF 82
Query: 151 RRMIEMG---ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--- 204
RR+ ++ +SS+P+ + I V S + + + KI+ SL
Sbjct: 83 RRLQQLSQAFSSSYPQF-------SNPSDHIFVEPVHSAHQLFDIMPKIESSLENRNSQL 135
Query: 205 -VKLLVIDSMEAL-------VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256
++L+VIDS+ AL P ++R+ +S + L LA+ + +V+TNQV
Sbjct: 136 PIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKL---LAKKYSLAVVLTNQVV 192
Query: 257 PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL----------- 305
L ++ + + R + LG WA+ V RL L
Sbjct: 193 DLMGSSDGLNALRIGNLKFLCSSERR----VCPALGLAWANCVNSRLFLSRNEEVVGEGE 248
Query: 306 ---------EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +R+++V +P P + + IN G+
Sbjct: 249 GMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGV 288
>gi|170290825|ref|YP_001737641.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174905|gb|ACB07958.1| DNA repair and recombination protein RadA [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 336
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 119/276 (43%), Gaps = 37/276 (13%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
+A +QR A + + T K LD L GGV +TE+ GP G+GKTQFC ++++
Sbjct: 90 SAYDFYQQRKAVQRI----TTGSKALDELLGGGVETQSITEIYGPYGSGKTQFCHQMAVT 145
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
L GGL G +YID E TF R++++ A F K + IL + +
Sbjct: 146 VQLDEEKGGLGRGAMYIDTEGTFRPERILQI-AERF------KLDPEHTLKNILYARAFT 198
Query: 186 LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLA 242
E+ + + + + L+++DS+ + G + R A Q L+ ++ + LA
Sbjct: 199 SDHQMIVTERAESYIKERDIGLIIVDSLISHFRGEYVGRETLAERQQKLNKYLHKLLRLA 258
Query: 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH-WAHAVTI 301
+ ++VTNQV + D T ++ G H H VT
Sbjct: 259 LGYNMAVIVTNQV---------------------VADPTAFFGDPNKPAGGHVLGHGVTA 297
Query: 302 RLVLE-AKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
RL ++ K +R + + KSP P I GI
Sbjct: 298 RLYIKRGKKDRRVIKLVKSPYLPEGTVEVAITQGGI 333
>gi|407035372|gb|EKE37666.1| DNA repair protein RAD51C, putative [Entamoeba nuttalli P19]
Length = 264
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
++PT + +D L GG+ G +T++VG G+GK+Q C++++ LP GGL+ IY
Sbjct: 20 NIPTFNQEIDQFLNGGISLGEITQIVGFPGSGKSQLCMQIACNVQLPEEIGGLNSECIYY 79
Query: 143 DVESTFT-SR--RMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVS 199
D S F SR RM E +S+PE K +E+ +I V QP + SL I
Sbjct: 80 DSYSQFCISRVQRMAECICASYPEY---KLNVKEILEKIHVYQPHDIVSLCSSLLSINNK 136
Query: 200 LLQNQVKLLVIDSM 213
L N+VKL++IDS+
Sbjct: 137 L--NKVKLIIIDSI 148
>gi|255966026|gb|ACU45298.1| DNA repair protein-like [Karlodinium veneficum]
Length = 349
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 135/306 (44%), Gaps = 57/306 (18%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L + R +H G P L L A + G + G E+ GP G GKTQFCL ++ L
Sbjct: 70 TALDLAKSR---KH--GGTPVPLGSLGAVVSGSL-SGKFMEVAGPPGVGKTQFCLHIAAL 123
Query: 126 AALPAHYGGLDGG-VIYIDVESTFTSRRMIEM-----GASSFPEIFHSKGMAQEMAGRIL 179
AA +GG V ++D E+TF R++E+ A S I ++ A R+
Sbjct: 124 AA-------ANGGEVFWLDSENTFAPPRLLEVLEAVCIARSAGNIHEAEAEALAALARVR 176
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVK------LLVIDSMEALVPGVHEQRAPGQHPLSW 233
TSL E L I L Q + L+++DS+ A+ + P + +
Sbjct: 177 KKSCTSLKE----LHNIAAELEQRAAQGVPVPALVIVDSVAAIARNDGDASEPQRVQIPR 232
Query: 234 HISLITSLAE-FSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLG 292
+ ++++A F RI + TNQ L P V +++ D S + LG
Sbjct: 233 RQAALSAIAGLFKRI-VASTNQS---------LAPPGVVVTNQVAGDPRSGGSRV--TLG 280
Query: 293 FHWAHAVTIRLVL---------------EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
W HAV RLVL A +RF++VEKSP SPP+ F I +G+S
Sbjct: 281 HVWHHAVNWRLVLSHLPPGDPRGYGLKESAVGSKRFLHVEKSPCSPPITIEFAICRNGLS 340
Query: 338 LLTDDG 343
+ G
Sbjct: 341 EICTIG 346
>gi|449452620|ref|XP_004144057.1| PREDICTED: DNA repair protein RAD51 homolog [Cucumis sativus]
gi|449518135|ref|XP_004166099.1| PREDICTED: DNA repair protein RAD51 homolog [Cucumis sativus]
Length = 340
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 146/346 (42%), Gaps = 56/346 (16%)
Query: 16 ANIFAARNITTAKDALSLT--------ELELMKLLDVELSEVRSALALVSEIVCPPFQTA 67
A+ AA ++ KDA T EL+++ + ++V + S+IV F +A
Sbjct: 31 ASGIAAMDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASKIVPLGFTSA 90
Query: 68 LLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAA 127
L QR L + + LD L GG+ G +TE+ G +GKTQ C L +
Sbjct: 91 GQLHAQRLEIIQL----TSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQ 146
Query: 128 LPAHYGGLDGGVIYIDVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILV 180
LP GG +G +YID E TF +R++++ GA + +++ + R+L
Sbjct: 147 LPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL- 205
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHIS 236
L+ S+ +++ + L+++DS AL G E A H L+ +
Sbjct: 206 LEAASM-------------MVETRFALMIVDSATALYRTDFSGRGELSARQMH-LAKFLR 251
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+ LA+ + +V+TNQV Q D S ++ I + G A
Sbjct: 252 SLQKLADEFGVAVVITNQVVAQV-DGSAIFA----------------GPQIKPIGGNIMA 294
Query: 297 HAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
HA T RL L G +R V SP F I+ G++ + D
Sbjct: 295 HASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD 340
>gi|253741848|gb|EES98708.1| Dmc1b [Giardia intestinalis ATCC 50581]
Length = 368
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 138/319 (43%), Gaps = 34/319 (10%)
Query: 23 NITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGG 82
I T + L T+ L + + ++V L++ +E+ F T +++RA + L
Sbjct: 74 GIHTVQSLLMHTKKALGHVKGISEAKVEKILSVANEMCGNTFITGSEALKKRAQVKRL-- 131
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
T + L GGV +TE+ G TGKTQ C L++ A LP GG G +YI
Sbjct: 132 --STGCTDFNTLLGGGVETMSITEVFGEFRTGKTQLCHTLAVTAQLPVSKGGGGGKTVYI 189
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLL 201
D E TF ++ + E F G+ + A I+V + + + E + + ++
Sbjct: 190 DTEGTFRPEKV-----APIAERF---GLNPKKALDNIIVARVYTHEQQIECITALPKLMI 241
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
++Q L++IDS+ AL R A Q L H++ + LA+ + I VTNQV Q
Sbjct: 242 ESQFALVIIDSITALFRVDFTGRGELADRQQKLGQHLAGLAKLADEFNLAIFVTNQVMAQ 301
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
D + ++ +K + G AHA T RL L G R +
Sbjct: 302 V-DGAAMFTADPKK----------------PIGGHILAHASTTRLYLRKGRGDTRVAKIY 344
Query: 318 KSPTSPPLAFSFTINPSGI 336
SP+ S++I GI
Sbjct: 345 DSPSLAEGEASYSIAAEGI 363
>gi|167391058|ref|XP_001739621.1| meiotic recombination protein dmc1 [Entamoeba dispar SAW760]
gi|165896627|gb|EDR23978.1| meiotic recombination protein dmc1, putative [Entamoeba dispar
SAW760]
Length = 347
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 134/309 (43%), Gaps = 35/309 (11%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIV-CPPFQTALLLMEQRAATEHLGGHLPTRLKGLD 92
T EL + S+V + VS+I F +A +E+RA + T D
Sbjct: 63 TRKELCSIRGFSDSKVDKIMEAVSKIFPTHSFISATTSLERRANVIKI----TTGSSQFD 118
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
L GG+ VTE+ G TGKTQ C L++ LP+H G +G V YID E TF R
Sbjct: 119 QLLGGGIETMSVTEMFGEFRTGKTQLCHTLAVTTQLPSHLKGGNGKVAYIDTEGTFRPER 178
Query: 153 MIEMGASSFPEIFHSKGMAQ-EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVID 211
+ ++ A F G+ Q + IL+ + + + + L ++ + ++ ++L+ID
Sbjct: 179 ITQI-AERF-------GVDQTAVLDNILIARAYTHEQQFDLLIEVAARMAEDHFRILIID 230
Query: 212 SMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
S+ +L R + Q L ++ + ++E + +V+TNQV +
Sbjct: 231 SVTSLFRVDFSGRGELSERQQKLGKMMNKLIKISEEFNVAVVITNQVMSDPGGGAMF--- 287
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAF 327
++ + H++ AHA T RL L G QR + + SP P
Sbjct: 288 -------VVDPKKPIGGHVI-------AHASTTRLYLRKGKGEQRIVKIYDSPNLPEAEA 333
Query: 328 SFTINPSGI 336
+F I+ GI
Sbjct: 334 TFAIDTGGI 342
>gi|123408121|ref|XP_001303137.1| Meiotic recombination protein DMC1/LIM15 homolog [Trichomonas
vaginalis G3]
gi|121884492|gb|EAX90207.1| Meiotic recombination protein DMC1/LIM15 homolog, putative
[Trichomonas vaginalis G3]
Length = 338
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGV +TE+ G TGKTQ C L + A LP G G V +ID E TF
Sbjct: 110 LDKLLGGGVESMSITEVFGEFRTGKTQLCHTLCVTAQLPLSQSGGQGKVCFIDTEGTFRP 169
Query: 151 RRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
R+ P I G+ E IL + + + + ++ + ++Q +LL+
Sbjct: 170 ERI--------PVIAQRFGVDGDEALENILYARAFTHEQQMQLIQAAAAQMAEDQYRLLI 221
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
IDS+ AL R A Q L ++ +T LA I I +TNQV + +S L+
Sbjct: 222 IDSITALFRVDFSGRGELAERQQTLGQMMAALTKLASEFNIAIFITNQV--MASPDSALF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPL 325
Q K + G AHA T RL L + K +R + SP+ P
Sbjct: 280 -VQAPK----------------PIGGHILAHASTTRLYLRKGKGAERVAKIYDSPSLPEA 322
Query: 326 AFSFTINPSGISLLT 340
S+ ++ +GI+ LT
Sbjct: 323 EASYELSDAGITDLT 337
>gi|435852388|ref|YP_007313974.1| DNA repair and recombination protein RadA [Methanomethylovorans
hollandica DSM 15978]
gi|433663018|gb|AGB50444.1| DNA repair and recombination protein RadA [Methanomethylovorans
hollandica DSM 15978]
Length = 325
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 125/284 (44%), Gaps = 38/284 (13%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++ME+R L G L T K + + GG+ +TE+ G G+GKTQ +L+
Sbjct: 66 FETGDVVMERRK----LVGKLSTGCKEFNDIMGGGIDSQAITEVYGEFGSGKTQLGHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGL+G VI ID E+TF R+ +M E++ +E I V +
Sbjct: 122 VNVQLPQEKGGLNGSVIMIDTENTFRPERIKQM-VDGLSELYGEDYDYEEFLKHIHVARA 180
Query: 184 TSLSEFTESLEKIKVSLLQNQ-------VKLLVIDSMEALVPGVHEQR---APGQHPLSW 233
+ + + L S L NQ V+LL++DS+ A + R A Q L+
Sbjct: 181 YNSNH--QILLVDAASELANQLKDSDKPVRLLIVDSLTAHFRAEYIGRGTLADRQQKLNK 238
Query: 234 HISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGF 293
H+ I + + ++VTNQV + K D D T+ + G
Sbjct: 239 HLHDIQRFGDLNNAVVLVTNQV--------------MSKPDAFFGDPTK------PIGGH 278
Query: 294 HWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
H T RL + ++K +R + + +P P ++ +G+
Sbjct: 279 ILGHTSTFRLYMRKSKGDKRIVKLVDAPNLPDAEAVISVTTAGL 322
>gi|395837908|ref|XP_003791870.1| PREDICTED: DNA repair protein RAD51 homolog 1 [Otolemur garnettii]
Length = 310
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 125/309 (40%), Gaps = 61/309 (19%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF-------- 166
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+P L E L+KI L+ + LL++DS AL
Sbjct: 167 -------------------------RPERLLAVAERLQKI---LIPCRYALLIVDSATAL 198
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 199 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 256
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 257 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 301
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 302 ADGVGDAKD 310
>gi|311698176|gb|ADQ00382.1| Dmc1 [Pneumocystis jirovecii]
Length = 337
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 131/309 (42%), Gaps = 33/309 (10%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T L K+ ++V ++ ++ PPFQTA+ + R ++ T K DA
Sbjct: 54 TRRNLSKIKGFSDAKVDKLKEIIQKLCPPPFQTAMEVSSFRRRVNYI----STGSKQFDA 109
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+ +TE+ G GKTQ + + LP GG +G Y+D E TF R+
Sbjct: 110 MLGGGIQSMSITEVFGEFRCGKTQISHTMCVTCQLPREMGGAEGKAAYLDTEGTFRPDRI 169
Query: 154 IEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDS 212
+ A + A++ ILV + + + + K+ ++ + +LL++DS
Sbjct: 170 KSIAARFGVD-------AEQAMNNILVGRAFNSEHQMDLINKMCTIFSEDGRYRLLIVDS 222
Query: 213 MEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQ 269
+ AL + R + Q L+ +S + +AE I + +TNQV+ D F
Sbjct: 223 IMALFRVDYSGRGELSERQQKLNVMLSRLNRIAEEYNIAVFLTNQVQA---DPGATLMFA 279
Query: 270 VQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFS 328
DR H++ AHA R++L G +R ++ SP P +
Sbjct: 280 S-------NDRKPVGGHVL-------AHASATRILLRKGRGEERVAKIQDSPDMPEAECT 325
Query: 329 FTINPSGIS 337
+TI GI
Sbjct: 326 YTIKAGGID 334
>gi|443897777|dbj|GAC75116.1| DNA repair protein RAD51/RHP55 [Pseudozyma antarctica T-34]
Length = 280
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 111/258 (43%), Gaps = 30/258 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LDA L GG+ G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 29 ITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYID 88
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + E + G +E+ + + + + L + + ++
Sbjct: 89 TEGTFRPTRLL-----AVAERYGLNG--EEVLDNVAYARAYNADHQLQLLMQASAMMAES 141
Query: 204 QVKLLVIDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LL++DS+ +L G E A H + L+ EF + +V+TNQV Q
Sbjct: 142 RFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFG-VAVVITNQVVAQV 200
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEK 318
D + + +K + G AHA T RL L + + QR V
Sbjct: 201 -DGATAFTADAKK----------------PIGGNIVAHASTTRLSLRKGRGNQRICRVAD 243
Query: 319 SPTSPPLAFSFTINPSGI 336
SP P F I GI
Sbjct: 244 SPCLPEADAVFAIGAEGI 261
>gi|449018929|dbj|BAM82331.1| DNA repair protein RAD51 [Cyanidioschyzon merolae strain 10D]
Length = 347
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 112/258 (43%), Gaps = 30/258 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LDA L GG+ G +TEL G TGK+Q C L + +P GG +G +YID
Sbjct: 112 LTTGSKELDALLQGGIETGSITELFGEFRTGKSQLCHTLCVTCQMPVAEGGAEGKALYID 171
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++++ E F Q++ + + + E L + + ++
Sbjct: 172 TEGTFRPERIVQIA-----ERFQLD--PQDVLDNVAFARAYNTDHQMELLMQAAGLMSES 224
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ L+V+DS AL + R A Q ++ + + LA+ + +V+TNQV
Sbjct: 225 RYALVVVDSATALYRTDYSGRGELAARQQHMARFLRALQRLADEFGVAVVITNQV----- 279
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKS 319
V K D ++ + V + G AHA RL G+ R + S
Sbjct: 280 ---------VAKPDAMM-----FADPRVPIGGNIIAHACQTRLYFRKGRGENRICKIYDS 325
Query: 320 PTSPPLAFSFTINPSGIS 337
P+ P SF I G++
Sbjct: 326 PSLPEAEASFAITEGGVA 343
>gi|30578205|gb|AAP35099.1|AF485820_1 DMC1 [Entamoeba histolytica]
Length = 334
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 134/309 (43%), Gaps = 35/309 (11%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIV-CPPFQTALLLMEQRAATEHLGGHLPTRLKGLD 92
T EL + S+V + VS+I F +A +E+RA + T D
Sbjct: 50 THKELCAIRGFSDSKVDKIMEAVSKIFPTHSFISATTSLERRANVIKI----TTGSSQFD 105
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
L GG+ VTE+ G TGKTQ C L++ LP+H G +G V YID E TF R
Sbjct: 106 QLLGGGIETMSVTEMFGEFRTGKTQLCHTLAVTTQLPSHLKGGNGKVAYIDTEGTFRPER 165
Query: 153 MIEMGASSFPEIFHSKGMAQ-EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVID 211
+ ++ A F G+ Q + IL+ + + + + L ++ + ++ ++L+ID
Sbjct: 166 IAQI-AERF-------GVDQTAVLDNILIARAYTHEQQFDLLIEVAARMAEDHFRMLIID 217
Query: 212 SMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
S+ +L R + Q L ++ + ++E + +V+TNQV +
Sbjct: 218 SVTSLFRVDFSGRGELSERQQKLGKMMNKLIKISEEFNVAVVITNQVMSDPGGGAMF--- 274
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAF 327
++ + H++ AHA T RL L G QR + + SP P
Sbjct: 275 -------VVDPKKPIGGHVI-------AHASTTRLYLRKGKGEQRIVKIYDSPNLPEAEA 320
Query: 328 SFTINPSGI 336
+F I+ GI
Sbjct: 321 TFAIDTGGI 329
>gi|357150566|ref|XP_003575503.1| PREDICTED: DNA repair protein RAD51 homolog B-like [Brachypodium
distachyon]
Length = 346
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 138/317 (43%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + T + LD L
Sbjct: 66 DLLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQV----TTGSRELDRILE 121
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 122 GGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 181
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L+V
Sbjct: 182 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MVETRFALMV 227
Query: 210 IDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H L+ + + LA+ + +V++NQV Q +
Sbjct: 228 VDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVISNQVVAQVDGGAMF 286
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPP 324
Q++ + G AHA T RL L + ++ +R V SP
Sbjct: 287 AGPQIKPIG-----------------GNIMAHASTTRLYLRKGRAEERICKVVSSPCLAE 329
Query: 325 LAFSFTINPSGISLLTD 341
F I+P G++ + D
Sbjct: 330 AEARFQISPEGVTDVKD 346
>gi|67482461|ref|XP_656580.1| Meiotic recombination protein DMC1 [Entamoeba histolytica
HM-1:IMSS]
gi|56473788|gb|EAL51192.1| Meiotic recombination protein DMC1, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449704808|gb|EMD44979.1| meiotic recombination protein DMC1, putative [Entamoeba histolytica
KU27]
Length = 347
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 133/309 (43%), Gaps = 35/309 (11%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIV-CPPFQTALLLMEQRAATEHLGGHLPTRLKGLD 92
T EL + S+V + VS+I F +A +E+RA + T D
Sbjct: 63 THKELCAIRGFSDSKVDKIMEAVSKIFPTHSFISATTSLERRANVIKI----TTGSSQFD 118
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
L GG+ VTE+ G TGKTQ C L++ LP+H G +G V YID E TF R
Sbjct: 119 QLLGGGIETMSVTEMFGEFRTGKTQLCHTLAVTTQLPSHLKGGNGKVAYIDTEGTFRPER 178
Query: 153 MIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVID 211
+ ++ A F G+ Q IL+ + + + + L ++ + ++ ++L+ID
Sbjct: 179 IAQI-AERF-------GVDQTAVLDNILIARAYTHEQQFDLLIEVAARMAEDHFRMLIID 230
Query: 212 SMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
S+ +L R + Q L ++ + ++E + +V+TNQV +
Sbjct: 231 SVTSLFRVDFSGRGELSERQQKLGKMMNKLIKISEEFNVAVVITNQVMSDPGGGAMF--- 287
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAF 327
++ + H++ AHA T RL L G QR + + SP P
Sbjct: 288 -------VVDPKKPIGGHVI-------AHASTTRLYLRKGKGEQRIVKIYDSPNLPEAEA 333
Query: 328 SFTINPSGI 336
+F I+ GI
Sbjct: 334 TFAIDTGGI 342
>gi|449328634|gb|AGE94911.1| DNA repair protein rad51 like-protein [Encephalitozoon cuniculi]
Length = 334
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 113/261 (43%), Gaps = 31/261 (11%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+L T +D L GG G +TE+ G TGKTQ C +++ LP GG G +YI
Sbjct: 95 YLTTGSSEVDKLLSGGFESGSITEIFGEFRTGKTQLCHTVAVTCQLPPEQGGGGGKAMYI 154
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
D E TF S R++ + A F G+ E+ I + + ++ L K +
Sbjct: 155 DTEGTFRSERLVPI-AERF-------GLDPNEVMDNISYARAYNSDHQSQLLIKASAMMS 206
Query: 202 QNQVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257
+++ +L+IDS AL G E A H L+ ++ + +LAE RI +++TNQV
Sbjct: 207 ESKYSVLIIDSATALYRTDFSGRGELGARQLH-LAKYLRSLVNLAETFRIAVIITNQVVS 265
Query: 258 QSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNV 316
++ ++K + G AHA T RL L G+ R +
Sbjct: 266 NVDGAVGMFAGDIKK----------------PIGGNIMAHASTTRLYLRKGRGETRICKI 309
Query: 317 EKSPTSPPLAFSFTINPSGIS 337
SP P F I GI+
Sbjct: 310 YDSPCLPESEAVFAITEQGIN 330
>gi|402873989|ref|XP_003900830.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 2 [Papio
anubis]
gi|402873991|ref|XP_003900831.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 3 [Papio
anubis]
Length = 340
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 110/253 (43%), Gaps = 28/253 (11%)
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
A GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R
Sbjct: 112 AGTTGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER 171
Query: 153 MIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDS 212
++ + E + G ++ + + + T+ L + +++++ LL++DS
Sbjct: 172 LL-----AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDS 224
Query: 213 MEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQ 269
AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 225 ATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAAD 283
Query: 270 VQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFS 328
+K + G AHA T RL L G+ R + SP P
Sbjct: 284 PKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAM 327
Query: 329 FTINPSGISLLTD 341
F IN G+ D
Sbjct: 328 FAINADGVGDAKD 340
>gi|345804171|ref|XP_003435154.1| PREDICTED: DNA repair protein XRCC3 [Canis lupus familiaris]
Length = 349
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 141/338 (41%), Gaps = 70/338 (20%)
Query: 32 SLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGL 91
SL+ L++ LL S +R L TAL L E+ G LP R + L
Sbjct: 40 SLSSLDVQHLLRAASSRLRGGGVL----------TALQLCER-------AGGLPARPQRL 82
Query: 92 -------DAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144
D L GG+P VTEL G + GKTQ L+L L P +GGLD G +YI
Sbjct: 83 SLGCPVLDRLLRGGLPLDGVTELAGLSSAGKTQLALQLCLAVQFPPRHGGLDAGAMYICT 142
Query: 145 ESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESL----------- 193
E F + R+ ++ I + + ++ G ++ S F E +
Sbjct: 143 EDVFPNLRLQQL-------IAQQQRLRTDVPGEVVSRIKFSNQIFIEHVADVDSLLECVR 195
Query: 194 EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITSLAEFS---RIPI 249
EK+ V L + +L+VIDS+ A P E P P + H+ +L +L S + P+
Sbjct: 196 EKVPVLLSRGMARLVVIDSVAA--PFRCEFDGPALVPRARHLQALGAALRRLSCAFQSPV 253
Query: 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL------ 303
+ NQV + ++ L+D + LG W++ + +RL
Sbjct: 254 LCINQVTEATEEQG------TAPRPHGLRD-----ERVSPALGMTWSNQLLMRLMVHRRR 302
Query: 304 -----VLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
V A R ++V +P PP + S+T+N G+
Sbjct: 303 PGDEAVTPAGPPDRTLSVVFAPHLPPSSCSYTVNAEGV 340
>gi|20092352|ref|NP_618427.1| DNA repair and recombination protein RadA [Methanosarcina
acetivorans C2A]
gi|34395790|sp|Q8TK71.1|RADA_METAC RecName: Full=DNA repair and recombination protein RadA
gi|19917601|gb|AAM06907.1| DNA repair protein [Methanosarcina acetivorans C2A]
Length = 325
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 124/288 (43%), Gaps = 44/288 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T L++E+R L G L T D + GG+ +TEL G G+GKTQ +L+
Sbjct: 66 FETGDLVLERR----KLVGKLTTGCVEFDEMMGGGIETQSITELYGEFGSGKTQVAHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM--------GASSFPEIF-HSKGMAQEM 174
+ + +GGLDG VI ID E+TF R+ +M G PE F + +A+
Sbjct: 122 VNVQMDKEHGGLDGSVIIIDTENTFRPERITQMVKGLSEKYGMELDPEEFLQNIHVARAY 181
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L S ++ L++ + V+LL++DS+ A + R A Q L
Sbjct: 182 NSNHQILLVDSATDLANELKE-----MGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKL 236
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAV 290
+ H+ + + +VVTNQV + K D D TR HIV
Sbjct: 237 NKHMHGLLRFGDLFNACVVVTNQV--------------MAKPDAFFGDPTRPVGGHIV-- 280
Query: 291 LGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
H T RL L G+ R + + SP+ P + +G++
Sbjct: 281 -----GHTATFRLYLRKSKGEKRIIRLVDSPSLPEGEAVVAVTTAGLT 323
>gi|407044782|gb|EKE42819.1| meiotic recombinase Dmc1 protein [Entamoeba nuttalli P19]
Length = 347
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 133/309 (43%), Gaps = 35/309 (11%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIV-CPPFQTALLLMEQRAATEHLGGHLPTRLKGLD 92
T EL + S+V + VS+I F +A +E+RA + T D
Sbjct: 63 THKELCAIRGFSDSKVDKIMEAVSKIFPTHSFISATTSLERRANVIKI----TTGSSQFD 118
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
L GG+ VTE+ G TGKTQ C L++ LP+H G +G V YID E TF R
Sbjct: 119 QLLGGGIETMSVTEMFGEFRTGKTQLCHTLAVTTQLPSHLKGGNGKVAYIDTEGTFRPER 178
Query: 153 MIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVID 211
+ ++ A F G+ Q IL+ + + + + L ++ + ++ ++L+ID
Sbjct: 179 IAQI-AERF-------GVDQTAVLDNILIARAYTHEQQFDLLIEVAARMAEDHFRMLIID 230
Query: 212 SMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
S+ +L R + Q L ++ + ++E + +V+TNQV +
Sbjct: 231 SVTSLFRVDFSGRGELSERQQKLGKMMNKLIKISEEFNVAVVITNQVMSDPGGGAMF--- 287
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAF 327
++ + H++ AHA T RL L G QR + + SP P
Sbjct: 288 -------VVDPKKPIGGHVI-------AHASTTRLYLRKGKGEQRIVKIYDSPNLPEAEA 333
Query: 328 SFTINPSGI 336
+F I+ GI
Sbjct: 334 TFAIDTGGI 342
>gi|125772735|ref|XP_001357643.1| GA20711 [Drosophila pseudoobscura pseudoobscura]
gi|195159258|ref|XP_002020499.1| GL13479 [Drosophila persimilis]
gi|54637375|gb|EAL26777.1| GA20711 [Drosophila pseudoobscura pseudoobscura]
gi|194117268|gb|EDW39311.1| GL13479 [Drosophila persimilis]
gi|225581186|gb|ACN94754.1| GA20711 [Drosophila miranda]
Length = 335
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 110/258 (42%), Gaps = 27/258 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GG+ G +TE+ G GKTQ C L++ LP G +G +YID
Sbjct: 95 LTTGSKELDKLLGGGIETGSITEIFGEFRCGKTQICHTLAVTCQLPISQKGGEGKCLYID 154
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
ESTF + R+ S+ + F K E+ + + + + T+ L+ L +
Sbjct: 155 TESTFRTERL-----SAIAQRF--KLNESEVLDNVSCARAYNSDQQTKLLQMAAGMLFET 207
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ +++DS+ AL + R A Q+ L + + LA+ + +V+TNQV Q
Sbjct: 208 RYAAVIVDSVMALYRSDYIGRGELAARQNHLGLCMRQLQRLADEFGVAVVITNQVTAQLD 267
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKS 319
++ +K V G AHA T RL L G+ R + S
Sbjct: 268 GGGGMFVADAKK----------------PVGGHILAHASTTRLYLRKGKGETRICKIYDS 311
Query: 320 PTSPPLAFSFTINPSGIS 337
P P F I P GI
Sbjct: 312 PCLPESEAMFAILPDGIG 329
>gi|294494932|ref|YP_003541425.1| DNA repair and recombination protein RadA [Methanohalophilus mahii
DSM 5219]
gi|292665931|gb|ADE35780.1| DNA repair and recombination protein RadA [Methanohalophilus mahii
DSM 5219]
Length = 325
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 122/291 (41%), Gaps = 46/291 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T +M++R G L T + D + GG+ +TE+ G G+GKTQ +L+
Sbjct: 66 FETGDFVMQRRMEV----GKLRTGCEEFDELMGGGIETQSITEMYGEFGSGKTQIAHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGLDG VI ID E+TF R IE + F E I V +
Sbjct: 122 VNTQLPKEMGGLDGSVIIIDTENTFRPER-IEHMVAGLSHKFEQDFDPAEFLKNIHVARA 180
Query: 184 TS-------LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSW 233
+ + TE K+K + V+L+++DS+ A + R A Q L+
Sbjct: 181 YNSNHQILLVDAATEMANKLKNT--DKPVRLVIVDSLTAHFRAEYVGRGTLADRQQKLNK 238
Query: 234 HISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGF 293
H+ + + + ++VTNQV + K D D TR + G
Sbjct: 239 HLHDLQRFGDLNNASVIVTNQV--------------MSKPDAFFGDPTR------PIGGH 278
Query: 294 HWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDG 343
H T RL + ++K +R + + SP P + ++ +T DG
Sbjct: 279 ILGHTATFRLYIRKSKGDKRIVKLVDSPCLP--------DGEAVACITTDG 321
>gi|169843884|ref|XP_001828666.1| Rah1 [Coprinopsis cinerea okayama7#130]
gi|3237296|gb|AAC23703.1| Rah1 [Coprinopsis cinerea]
gi|116510275|gb|EAU93170.1| Rah1 [Coprinopsis cinerea okayama7#130]
Length = 343
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 125/304 (41%), Gaps = 31/304 (10%)
Query: 38 LMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCG 97
L+ + + + LA +IV FQ+A + +R+ H+ T K LDA L G
Sbjct: 61 LLAIRGISEQKADKILAEAQKIVPLGFQSATEVHARRSELVHI----TTGSKQLDALLGG 116
Query: 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157
G+ G +TEL G TGK+Q C L++ LP GG +G +YID E TF R++
Sbjct: 117 GIETGAITELFGEFRTGKSQICHTLAVTCQLPVSMGGGEGKCLYIDTEGTFRPVRLL--- 173
Query: 158 ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217
+ E F G +E+ + + + L + +++ LL++DS AL
Sbjct: 174 --AVAERFGLNG--EEVLDNVAYARAYNADHQQALLTSASALMSESRFCLLIVDSCTALY 229
Query: 218 PGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMD 274
R + Q L + + LA+ I +VVTNQV Y +K
Sbjct: 230 RTDFSGRGELSSRQTHLGKFLRTLQRLADEFGIAVVVTNQVMSTPDAAPGPYAGNEKK-- 287
Query: 275 RILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINP 333
+ G AHA T RL L+ G R + SP P +F I P
Sbjct: 288 --------------PIGGNIMAHASTTRLQLKKGRGNTRACKIYDSPCLPESETTFAILP 333
Query: 334 SGIS 337
GI
Sbjct: 334 GGIG 337
>gi|18857701|emb|CAD23442.1| putative RAD1 protein [Pleurotus ostreatus]
Length = 340
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 125/289 (43%), Gaps = 31/289 (10%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA +IV FQ+ + +R+ H+ T K LDA L GG+ G +TE+ G
Sbjct: 73 LAEAQKIVPLGFQSGTEVHARRSELVHI----TTGXKQLDALLGGGIETGAITEMFGEFR 128
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ 172
TGK+Q C L++ LP GG +G +YID E TF R++ + E + G +
Sbjct: 129 TGKSQICHTLAVTCQLPVSMGGGEGKCLYIDTEGTFRPVRLL-----AVAERYGLNG--E 181
Query: 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQH 229
E+ + + + + L + +++ LL++DS AL R + Q+
Sbjct: 182 EVLDNVAYARAYNADHQNQLLTSATRLMSESRFCLLIVDSCTALYRTDFSGRGELSSRQN 241
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVA 289
L + + LA+ I +V+TNQV S+ ++ P+ + I
Sbjct: 242 HLGKFLRTLQRLADEFGIAVVITNQV--MSNPDAAAGPYAGNEKKPI------------- 286
Query: 290 VLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
G AHA T RL L+ G R + SP P + F I SGI
Sbjct: 287 -GGNIMAHASTTRLQLKKGRGTTRTCKIYDSPCLPEMETQFAILQSGIG 334
>gi|195395050|ref|XP_002056149.1| GJ10382 [Drosophila virilis]
gi|194142858|gb|EDW59261.1| GJ10382 [Drosophila virilis]
Length = 351
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 132/307 (42%), Gaps = 31/307 (10%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T +L+ + + S+V + S++V F +A + R+ L T K LD
Sbjct: 65 TRRQLLNIKGLGESKVDHIMKEASKLVPLSFTSARTFHQMRSEVVML----TTGSKELDK 120
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+ G +TE+ G GKTQ C L++ LP G +G +YID E TF R+
Sbjct: 121 LLGGGIETGSITEIFGEFRCGKTQICHTLAVTCQLPISQNGGEGKALYIDTEGTFRPERL 180
Query: 154 IEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM 213
S+ + ++ + ++ + + + + T+ ++ + +++ L+++DS
Sbjct: 181 -----SAIAQRYNME--EADVLDNVACARAHNTDQQTKLVQMAAGMMFESRYALIIVDSA 233
Query: 214 EALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQV 270
AL + R A Q+ L + ++ LA+ + +V+TNQV Q + ++
Sbjct: 234 MALYRSEYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTAQVDGGASMFAADA 293
Query: 271 QKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSF 329
+K + G AHA T RL L + K R + SP P F
Sbjct: 294 KK----------------PIGGHIMAHASTTRLYLRKGKGDARICKIYDSPCLPESEAMF 337
Query: 330 TINPSGI 336
I P GI
Sbjct: 338 AILPEGI 344
>gi|19074882|ref|NP_586388.1| DNA REPAIR PROTEIN RAD51 HOMOLOG [Encephalitozoon cuniculi GB-M1]
gi|19069607|emb|CAD25992.1| DNA REPAIR PROTEIN RAD51 HOMOLOG [Encephalitozoon cuniculi GB-M1]
Length = 334
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 113/261 (43%), Gaps = 31/261 (11%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+L T +D L GG G +TE+ G TGKTQ C +++ LP GG G +YI
Sbjct: 95 YLTTGSSEVDKLLSGGFESGSITEIFGEFRTGKTQLCHTVAVTCQLPPEQGGGGGKAMYI 154
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
D E TF S R++ + A F G+ E+ I + + ++ L K +
Sbjct: 155 DTEGTFRSERLVPI-AERF-------GLDPNEVMDNISYARAYNSDHQSQLLIKASAMMS 206
Query: 202 QNQVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257
+++ +L+IDS AL G E A H L+ ++ + +LAE RI +++TNQV
Sbjct: 207 ESKYSVLIIDSATALYRTDFSGRGELGARQLH-LAKYLRSLVNLAETFRIAVIITNQVVS 265
Query: 258 QSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNV 316
++ ++K + G AHA T RL L G+ R +
Sbjct: 266 NVDGAVGMFTGDIKK----------------PIGGNIMAHASTTRLYLRKGRGETRICKI 309
Query: 317 EKSPTSPPLAFSFTINPSGIS 337
SP P F I GI+
Sbjct: 310 YDSPCLPESEAVFAITEQGIN 330
>gi|195450597|ref|XP_002072552.1| GK13653 [Drosophila willistoni]
gi|194168637|gb|EDW83538.1| GK13653 [Drosophila willistoni]
Length = 269
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD L GG+P G + EL+G GTGKTQ C+KL L LP GGLDG ++ D F
Sbjct: 28 KSLDVHLKGGIPLGKLIELIGNPGTGKTQMCMKLCLNVQLPRTLGGLDGESLFFDTRRDF 87
Query: 149 TSRRMIEMGASSFPEIFHSKGM-----AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
R+ E+ A F + + G A++M + +Q TS + + L N
Sbjct: 88 NPNRLKEL-ADEFERRYSTAGKSKAMNAEQMLRNVHYVQCTSPAHLIAQVRMTNKYLAAN 146
Query: 204 -QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAE 243
+K+++IDS+ + + R + L ++S+ + L +
Sbjct: 147 PNIKIIIIDSLSFALRMIQTVRQRYELLLELYVSMRSMLYQ 187
>gi|339234621|ref|XP_003378865.1| DNA repair and recombination protein RadA [Trichinella spiralis]
gi|316978565|gb|EFV61540.1| DNA repair and recombination protein RadA [Trichinella spiralis]
Length = 364
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 132/310 (42%), Gaps = 48/310 (15%)
Query: 41 LLDVE-LSEVRSA--LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCG 97
L+D++ +SE ++ L+ S++V F TA ++R+ + T K LD L G
Sbjct: 84 LIDIKGISEAKADKILSEASKLVPMGFTTATDFHQKRSEIIQI----TTGSKELDKLLQG 139
Query: 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM- 156
G+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 140 GIETGSITEVFGEFRTGKTQLCHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPERLLSVA 199
Query: 157 ------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
G + +++ + ++L+ +SE ++ LL++
Sbjct: 200 DRFQLSGPDVLDNVAYARAYNTDHQSQLLIQASAMMSE--------------SRYALLIV 245
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
DS AL + R + Q L + + LA+ + +++TNQV Q + ++
Sbjct: 246 DSATALYRTDYSGRGELSARQMHLGRFLRYLLRLADEFGVAVLITNQVVAQVDGGTAMFQ 305
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLA 326
+K + G AHA T RL L G+ R + SP P
Sbjct: 306 ADPKK----------------PIGGNIMAHASTTRLYLRKGRGESRICKIYDSPCLPESE 349
Query: 327 FSFTINPSGI 336
F I SGI
Sbjct: 350 AVFAILSSGI 359
>gi|112419535|dbj|BAF02935.1| RAD51 homolog [Populus nigra]
Length = 342
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 136/317 (42%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+++ + ++V + S++V F +A L QR + + + LD L
Sbjct: 62 ELLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRQEIIQI----TSGSRELDKILE 117
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GGV G +TE+ G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 118 GGVETGSITEMYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQI 177
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L++
Sbjct: 178 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MVETRFALMI 223
Query: 210 IDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H L+ + + LA+ + +V+TNQV Q D S +
Sbjct: 224 VDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVITNQVVAQV-DGSAI 281
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPP 324
+ I + G AHA T RL L G +R V SP
Sbjct: 282 FA----------------GPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAE 325
Query: 325 LAFSFTINPSGISLLTD 341
F I+ G++ + D
Sbjct: 326 AEARFQISAEGVTDVKD 342
>gi|313214368|emb|CBY42765.1| unnamed protein product [Oikopleura dioica]
gi|313239465|emb|CBY14399.1| unnamed protein product [Oikopleura dioica]
Length = 340
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 113/260 (43%), Gaps = 32/260 (12%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K D L GG+ G +TEL G TGK+Q C+ L++ A LP GG +G +YID
Sbjct: 102 ITTGSKEFDRMLAGGIETGSITELFGEFRTGKSQLCMTLAVTAQLPVDLGGGEGKALYID 161
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + E + G +++ + V + S L + ++
Sbjct: 162 TEGTFRPERLL-----AISERYGLSG--KDVLDNVAVARAFSTDHQMTMLHTCAAMMTES 214
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ ++++DS+ AL + R A Q L + + LA+ + IV+TNQV
Sbjct: 215 RYSIMIVDSIMALYRSDYSGRGELAARQMHLGKFLRGLLKLADTFGVAIVITNQVTA--- 271
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRF--MNVE 317
V M ++ D V G AHA R+ ++ G RF +
Sbjct: 272 --------NVDGM--MMGDNQ------TPVGGNILAHASCTRIKMKKGRGNNRFGMARIY 315
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P +F I+P GI+
Sbjct: 316 DSPCLPDEQITFAISPGGIT 335
>gi|298713772|emb|CBJ27144.1| DNA repair and recombination protein Rad51A [Ectocarpus
siliculosus]
Length = 343
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 140/314 (44%), Gaps = 40/314 (12%)
Query: 32 SLTELELMKLLDVE-LSEVRSAL--ALVSEIVCPPFQTAL--LLMEQRAATEHLGGHLPT 86
S++ + KL++V+ +SE ++A V ++V F TA LL Q T L T
Sbjct: 56 SISHCTIRKLVEVKGISEQKAAKLKETVYKLVPIGFTTASQHLLQRQDLIT------LTT 109
Query: 87 RLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146
K LD L GG+ G +TE+ G TGKTQ C L + +P GG +G +YID E
Sbjct: 110 GSKELDKLLEGGIETGSLTEVFGEFRTGKTQLCHTLCVACQMPLDAGGGEGKAMYIDTEG 169
Query: 147 TFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVK 206
TF +R+ ++ E F G ++ + + + + + L+ + +++
Sbjct: 170 TFRPQRL-----TAIAERFGLNG--DDVLENVAYARAHNSEQQMDLLKMASAMMAEDRYA 222
Query: 207 LLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDES 263
LLVIDS AL + R + Q L+ + +T +AE + +V+TNQV S
Sbjct: 223 LLVIDSATALYRTDYCGRGELSERQMQLAQFLRQLTRMAEEFGVAVVLTNQVVANPDGMS 282
Query: 264 CLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTS 322
KD T+ + G AHA T RL L +A+ R V SPT
Sbjct: 283 ------------FAKDSTK------PIGGNIIAHASTTRLRLRKARGDNRICQVFDSPTL 324
Query: 323 PPLAFSFTINPSGI 336
F+I P G+
Sbjct: 325 AESECQFSIGPVGV 338
>gi|241007827|ref|XP_002405184.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
gi|215491711|gb|EEC01352.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
Length = 352
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 135/312 (43%), Gaps = 38/312 (12%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+ + + ++ LA +++V F TA + ++R+ + T LD L
Sbjct: 72 QLLTIKGISEAKADKLLAEAAKLVPLGFTTATEIHQKRSDIVQI----TTGSTELDKLLG 127
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMI-- 154
GG+ G +TE+ G TGKTQ C +++ LP + G +G +YID E TF R++
Sbjct: 128 GGIETGSITEVFGEFRTGKTQLCHMMAVTCQLPIEHSGGEGKCLYIDTEGTFRPERLLAA 187
Query: 155 -EMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM 213
E S P++ + A+ + T+ L + + + + LLV+DS
Sbjct: 188 AEKYGLSGPDVLDNVAYARAY----------NSDHQTQLLIQASAMMAETRYALLVVDSA 237
Query: 214 EALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQV 270
AL + R + Q L+ + ++ LA+ + +++TNQV Q D + ++
Sbjct: 238 MALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVLITNQVVAQV-DGASMFAADP 296
Query: 271 QKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSF 329
+K + G AHA T RL L G+ R + SP P F
Sbjct: 297 KK----------------PIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMF 340
Query: 330 TINPSGISLLTD 341
I P GI+ + D
Sbjct: 341 AITPQGIADVRD 352
>gi|256017141|ref|NP_597994.3| DNA repair protein RAD51 homolog 1 isoform 2 [Homo sapiens]
gi|256017143|ref|NP_001157741.1| DNA repair protein RAD51 homolog 1 isoform 2 [Homo sapiens]
gi|47077076|dbj|BAD18467.1| unnamed protein product [Homo sapiens]
gi|119612841|gb|EAW92435.1| RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae), isoform
CRA_e [Homo sapiens]
gi|158257370|dbj|BAF84658.1| unnamed protein product [Homo sapiens]
Length = 340
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 109/249 (43%), Gaps = 28/249 (11%)
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 173
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + +++++ LL++DS AL
Sbjct: 174 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATAL 228
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 229 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 286
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 287 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 331
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 332 ADGVGDAKD 340
>gi|303272033|ref|XP_003055378.1| Rad51 DNA recombinase 3 [Micromonas pusilla CCMP1545]
gi|226463352|gb|EEH60630.1| Rad51 DNA recombinase 3 [Micromonas pusilla CCMP1545]
Length = 354
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 113/264 (42%), Gaps = 40/264 (15%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LDA L GGV G +TEL G G GKTQ C++L +P +GG DG +Y+D E +F +
Sbjct: 102 LDALLGGGVAAGEITELCGCPGIGKTQMCVQLCASVQIPHAFGGYDGEAVYVDTEGSFMA 161
Query: 151 RRM----------IEMGASSFPEIFHSKGM--------AQEMAGRILVLQPTSLSEFTES 192
R + +++ PE GM A+ M R+ + + ++E
Sbjct: 162 ERAEEIAEATARHLRSVSNASPE---DAGMSDAIASFTAERMLERVHLFRCHEVTELLAV 218
Query: 193 LEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVT 252
LE + + +++V+L+V+DS+ A L+ + LA + + +V
Sbjct: 219 LEALPAYVKKHRVRLVVVDSVAFHFRQDFRDMALRTTILAKMTQRLQQLASENALAVVTV 278
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQR 312
NQV + D + +V LG +AHA T R++L + R
Sbjct: 279 NQV-------------------TVKPDPRGGGARLVPALGESYAHACTTRIILSWEDDTR 319
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
+ KSP P +T+ GI
Sbjct: 320 TAYLYKSPRLPQGRARYTVTEGGI 343
>gi|315427207|dbj|BAJ48820.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
gi|315427272|dbj|BAJ48884.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
gi|343485851|dbj|BAJ51505.1| DNA repair protein RadA [Candidatus Caldiarchaeum subterraneum]
Length = 320
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 111/264 (42%), Gaps = 39/264 (14%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T LD + GGV +TE G G+GK+Q C +L++ LP GGLDG +Y
Sbjct: 80 GRITTGSTRLDLLIGGGVETQAITEFFGEFGSGKSQLCHQLAVNVQLPVRRGGLDGSALY 139
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSL 200
ID E+TF R+ M +S G+ A E+ RI+ + + +EK +
Sbjct: 140 IDTENTFRPERVTSMA--------NSLGLNADEVLERIIYAEAYTSDHQILLVEKADKII 191
Query: 201 LQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257
+ VKL+++DS+ + + R Q L+ H+ + L I VVTNQV
Sbjct: 192 KEKNVKLIIVDSLTSHFRSEYLGRQLLPERQQKLNKHMHKLIRLCRAFNIAAVVTNQVMS 251
Query: 258 QSHD---ESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ--R 312
+ D +YP HIV H +H R+ L +G+ R
Sbjct: 252 RPDDIFSTMAVYPIG---------------GHIVG----HTSHN---RVFLRKVAGKPLR 289
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
+ SP P F I G+
Sbjct: 290 IARLVSSPYLPEGEAVFKITERGV 313
>gi|448262384|pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
gi|448262385|pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
gi|448262386|pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
gi|448262387|pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
gi|448262388|pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
gi|448262389|pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
gi|448262390|pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
gi|448262391|pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
gi|448262392|pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
gi|453055723|pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 115/265 (43%), Gaps = 50/265 (18%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T K LD L GG+ +TE+ G G+GKTQ L+++ LP GGL+G V++
Sbjct: 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVMW 64
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSE---FTESLEKIK 197
ID E+TF R+ EI ++G+ E+ I + + + + E +
Sbjct: 65 IDTENTFRPERI--------REIAQNRGLDPDEVLKHIAYARAFNSNHQMLLVQQAEDMI 116
Query: 198 VSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
LL VKLL++DS+ + + R A Q L+ H++ + LA I + VT
Sbjct: 117 KELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT 176
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQ 311
NQV+ HI+ AH+ T+R+ L + K G+
Sbjct: 177 NQVQANG-------------------------GHIL-------AHSATLRVYLRKGKGGK 204
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
R + +P P F+I GI
Sbjct: 205 RIARLIDAPHLPEGEAVFSITEKGI 229
>gi|298715571|emb|CBJ28124.1| rad51 homolog C [Ectocarpus siliculosus]
Length = 344
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 115/265 (43%), Gaps = 40/265 (15%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
+D + GGVP G +TE+ G G GKTQF ++L++ +P +GG+ GG +YID E + T
Sbjct: 46 IDGMMGGGVPRGELTEVCGTPGVGKTQFGMQLAVDVQIPHQFGGVGGGALYIDTEGSLTV 105
Query: 151 RRMIEMGAS---------------SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK 195
R+ ++ ++ P++ + + G I V + L + E L
Sbjct: 106 ERLSQLCSAVVEHLQKIARNKRKQGVPDLESAVPTQEAFLGGIHVWR---LHDHAEQLAA 162
Query: 196 IKV----SLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVV 251
++ + +VKL+V+DS+ + + LS + +A+ + +V+
Sbjct: 163 VRTLPEFLVAHPEVKLVVMDSVAFHFRHAFQDMSVRTRMLSRMAQQLNEVAQAHSLAVVL 222
Query: 252 TNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ 311
NQ M + R S +V LG WAHA T RL+L K +
Sbjct: 223 VNQ------------------MTTKVMTGHRGESSLVPALGESWAHAATNRLLLLWKGQE 264
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
RF + KSP F++ GI
Sbjct: 265 RFAELLKSPRLRRKTVPFSVVGVGI 289
>gi|318056252|ref|NP_001187675.1| DNA repair protein XRCC3 [Ictalurus punctatus]
gi|308323669|gb|ADO28970.1| DNA repair protein XRCC3 [Ictalurus punctatus]
Length = 349
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 138/307 (44%), Gaps = 25/307 (8%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLL---DVELSEVRSALALVSEIVCPPFQTAL 68
PK IA + A N+ +A+ LSL +L +LL D E+ V +A+A + V PP TAL
Sbjct: 10 PKIIAALKRA-NVNSAEKILSLPAPDLQRLLHLSDSEVQLVHTAVAALYRSV-PPV-TAL 66
Query: 69 LLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
L+ + G L LD L GG+P +TEL G + GKTQF L+LSL
Sbjct: 67 QLIRGEFPSLEPGHRLSFACPVLDGLLHGGLPLHGITELAGESAAGKTQFGLQLSLSVQY 126
Query: 129 PAHYGGLDGGVIYIDVESTFTSRR---MIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
+GGL G +YI E F +R +I + P++ + + + I +
Sbjct: 127 SREHGGLGAGAVYICTEDPFPIKRLRQLITQQSRLRPDVPPALIRSIRFSDNIYIEHTAD 186
Query: 186 LSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPG---VHEQRAPGQHPLSWHISLITSL 241
L + ++++ L + V+L+V+DS+ AL E +H L++ +L L
Sbjct: 187 LEALQRCVTQRLRTLLERGLVRLIVVDSVAALFRSEFQADEAIERARHLLAFSATL-HRL 245
Query: 242 AEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTI 301
+ P+ NQV V + +D S ++ LG WA+ V +
Sbjct: 246 SHTYSTPVFCINQVSD-----------VVDGPNPSRRDYGLVESKVLPALGIIWANQVMV 294
Query: 302 RLVLEAK 308
RL+L +
Sbjct: 295 RLMLRRQ 301
>gi|16082126|ref|NP_394563.1| DNA repair and recombination protein RadA [Thermoplasma acidophilum
DSM 1728]
gi|13878691|sp|Q9HJ68.1|RADA_THEAC RecName: Full=DNA repair and recombination protein RadA
gi|10640417|emb|CAC12231.1| probable DNA repair protein Rad51 (RadA) [Thermoplasma acidophilum]
Length = 323
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 121/288 (42%), Gaps = 45/288 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R + + L T K LD L GG+ +TE G G+GKTQ +L+
Sbjct: 74 FETGEEILERRKSIQKL----TTGSKNLDDLLGGGLETQAITEFFGEFGSGKTQIMHQLA 129
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GG D V+ ID E+TF R+I+M S + E RI V +
Sbjct: 130 VNCTLPKEKGGFDSDVMMIDTENTFRPERIIQMAKSKGAD-------PDETLKRIHVARA 182
Query: 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240
+ EK + + + +KLL++DS+ A + R A Q L+ H+ +
Sbjct: 183 YNSHHQILLAEKAQDTAKEYNIKLLIVDSLTAHFRSEYVGRGSLAERQQLLNKHMHDLLR 242
Query: 241 LAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHW-AH 297
I VTNQV RP ++ +A +G + H
Sbjct: 243 FGTIYNAVIAVTNQVSARPDV-----------------------FFGDPMAPIGGNIVGH 279
Query: 298 AVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGT 344
T R+ L ++K G+R + SP P I+ G+S DGT
Sbjct: 280 TATFRIYLRKSKGGKRIARLIDSPYLPEGETVIQISEEGVS----DGT 323
>gi|374850436|dbj|BAL53425.1| DNA repair protein RadA [uncultured crenarchaeote]
Length = 320
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 111/264 (42%), Gaps = 39/264 (14%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T LD + GGV +TE G G+GK+Q C +L++ LP GGLDG +Y
Sbjct: 80 GRITTGSTRLDLLIGGGVETQAITEFFGEFGSGKSQLCHQLAVNVQLPVRRGGLDGSALY 139
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSL 200
ID E+TF R+ M +S G+ A E+ RI+ + + +EK +
Sbjct: 140 IDTENTFRPERVTSMA--------NSLGLNADEVLERIIYAEAYTSDHQILLVEKADKII 191
Query: 201 LQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257
+ VKL+++DS+ + + R Q L+ H+ + L I VVTNQV
Sbjct: 192 KEKNVKLIIVDSLTSHFRSEYLGRQLLPERQQKLNKHMHKLIRLCRAFNIAAVVTNQVMS 251
Query: 258 QSHD---ESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ--R 312
+ D +YP HIV H +H R+ L +G+ R
Sbjct: 252 RPDDIFSTMAVYPIG---------------GHIVG----HTSHN---RVFLRKVAGKPLR 289
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
+ SP P F I G+
Sbjct: 290 IARLVSSPYLPEGEAVFKITERGV 313
>gi|311698172|gb|ADQ00380.1| Dmc1 [Pneumocystis carinii]
gi|311698174|gb|ADQ00381.1| Dmc1 [Pneumocystis carinii]
Length = 336
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 130/309 (42%), Gaps = 33/309 (10%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T L K+ ++V + ++ PPFQTA+ + R ++ T K DA
Sbjct: 53 TRRNLSKIKGFSEAKVEKLKEIAQKLCPPPFQTAMEVSSFRRRVNYI----STGSKQFDA 108
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+ +TE+ G GKTQ + + LP GG +G Y+D E TF R+
Sbjct: 109 MLGGGIQSMSITEVFGEFRCGKTQISHTMCVTCQLPKEMGGAEGKAAYLDTEGTFRPDRI 168
Query: 154 IEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDS 212
+ A + A++ ILV + + + + K+ ++ + +LL++DS
Sbjct: 169 KSIAARFGVD-------AEQAMNNILVGRAFNSEHQMDLINKMCTIFSEDGRYRLLIVDS 221
Query: 213 MEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQ 269
+ AL + R + Q L+ +S +T +AE I + +TNQV+ D F
Sbjct: 222 IMALFRVDYSGRGELSERQQKLNIMLSRLTRIAEEYNIAVFLTNQVQA---DPGATLMFA 278
Query: 270 VQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFS 328
DR H++ AHA R++L G +R ++ SP P
Sbjct: 279 SN-------DRKPVGGHVL-------AHASATRILLRKGRGEERVAKIQDSPDMPEGECV 324
Query: 329 FTINPSGIS 337
+TI GI
Sbjct: 325 YTIKAGGID 333
>gi|114656382|ref|XP_001144544.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 2 [Pan
troglodytes]
gi|332843553|ref|XP_003314670.1| PREDICTED: DNA repair protein RAD51 homolog 1 [Pan troglodytes]
Length = 340
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 109/249 (43%), Gaps = 28/249 (11%)
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 173
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + +++++ LL++DS AL
Sbjct: 174 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATAL 228
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 229 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 286
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 287 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 331
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 332 ADGVGDAKD 340
>gi|311698168|gb|ADQ00378.1| Dmc1 [Pneumocystis murina]
gi|311698170|gb|ADQ00379.1| Dmc1 [Pneumocystis murina]
Length = 336
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 130/309 (42%), Gaps = 33/309 (10%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T L K+ ++V + ++ PPFQTA+ + R ++ T K DA
Sbjct: 53 TRRNLSKIKGFSEAKVEKLKEIAQKLCPPPFQTAMEVSSFRRRVNYI----STGSKQFDA 108
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+ +TE+ G GKTQ + + LP GG +G Y+D E TF R+
Sbjct: 109 MLGGGIQSMSITEVFGEFRCGKTQISHTMCVTCQLPKEMGGAEGKAAYLDTEGTFRPDRI 168
Query: 154 IEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDS 212
+ A + A++ ILV + + + + K+ ++ + +LL++DS
Sbjct: 169 KSIAARFGVD-------AEQAMNNILVGRAFNSEHQMDLINKMCTIFSEDGRYRLLIVDS 221
Query: 213 MEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQ 269
+ AL + R + Q L+ +S +T +AE I + +TNQV+ D F
Sbjct: 222 IMALFRVDYSGRGELSERQQKLNIMLSRLTRIAEEYNIAVFLTNQVQA---DPGATLMFA 278
Query: 270 VQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFS 328
DR H++ AHA R++L G +R ++ SP P
Sbjct: 279 SN-------DRKPVGGHVL-------AHASATRILLRKGRGEERVAKIQDSPDMPEGECV 324
Query: 329 FTINPSGIS 337
+TI GI
Sbjct: 325 YTIKAGGID 333
>gi|332254242|ref|XP_003276237.1| PREDICTED: DNA repair protein XRCC3 [Nomascus leucogenys]
Length = 346
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 148/343 (43%), Gaps = 33/343 (9%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 10 PRIIAAIKKAK-LKSVKEVLRFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSIVTALQL 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+Q+ L LDA L GG+P +TEL G + GKTQ L+L L P
Sbjct: 69 HQQKQRFPAQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPR 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKG---MAQEMAGRILVLQPTSLS 187
+GGL+ G +YI E F +R+ ++ A G + +I + +
Sbjct: 129 QHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLLKLRFGSQIFIEHVADVD 188
Query: 188 EFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITSLAEFS 245
E + +K+ V L + +L++IDS+ A P E + P + + SL +L E S
Sbjct: 189 TLLECVNKKVPVLLSRGMARLVIIDSVAA--PFRCEFDSQASAPRARRLQSLGAALRELS 246
Query: 246 ---RIPIVVTNQVRPQSHDESCLY-PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTI 301
+ P++ NQV ++ + P + + LG WA+ + +
Sbjct: 247 SAFQSPVLCINQVTEAMEEQGAAHGPLGF------------WDERVSPALGITWANQLLV 294
Query: 302 RLVL------EAKSG--QRFMNVEKSPTSPPLAFSFTINPSGI 336
RL+ EA G R + V +P PP + S+TI+ G+
Sbjct: 295 RLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>gi|183233498|ref|XP_654218.2| DNA repair protein RAD51C [Entamoeba histolytica HM-1:IMSS]
gi|169801545|gb|EAL48832.2| DNA repair protein RAD51C, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 283
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
++PT + +D L GG+ G +T++VG G+GK+Q C++++ LP GGL+ IY
Sbjct: 39 NIPTFNQEIDQFLNGGISLGEITQIVGFPGSGKSQLCMQIACNVQLPEEIGGLNSECIYY 98
Query: 143 DVESTFT-SR--RMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVS 199
D S F SR RM E +S+PE K +E+ +I V QP + SL I
Sbjct: 99 DSYSQFCISRVQRMAECICASYPEY---KLNVKEILEKIHVYQPHDIVSLCSSLLSINNK 155
Query: 200 LLQNQVKLLVIDSM 213
L N+VK+++IDS+
Sbjct: 156 L--NKVKVIIIDSI 167
>gi|397512615|ref|XP_003826636.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 4 [Pan
paniscus]
gi|397512617|ref|XP_003826637.1| PREDICTED: DNA repair protein RAD51 homolog 1 isoform 5 [Pan
paniscus]
Length = 340
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 109/249 (43%), Gaps = 28/249 (11%)
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 116 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 173
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + +++++ LL++DS AL
Sbjct: 174 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATAL 228
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 229 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 286
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 287 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 331
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 332 ADGVGDAKD 340
>gi|20094878|ref|NP_614725.1| DNA repair and recombination protein RadA [Methanopyrus kandleri
AV19]
gi|19888111|gb|AAM02655.1| RadA recombinase [Methanopyrus kandleri AV19]
Length = 317
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 107/257 (41%), Gaps = 42/257 (16%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGVP G +TE GP G+GK+Q +L + LP GGL+ I+ID E T +
Sbjct: 84 LDEILGGGVPCGELTEFAGPFGSGKSQIVFQLCVNVQLPEEEGGLESKAIFIDTEGTVSP 143
Query: 151 RRMIEMGASSFPEIFHSKGMAQ-------EMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
R+ KGMA+ E + V Q S+ E + E+ +
Sbjct: 144 GRI--------------KGMAEALGLDPGEALRNVFVTQVRSVEEQMRAAEEAHKLCERE 189
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ L+VIDS+ A + + + Q L H+ + +LA + +V TNQV
Sbjct: 190 DIGLVVIDSLTAHFRAEYSKLGDVSERQARLMKHVDQLRNLAMDHDVAVVFTNQVHVD-- 247
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKS 319
++ K + R Y V G AH T R++L G+ R + S
Sbjct: 248 ------------IEAATKGKGRRYE---PVGGTIVAHQATHRIMLRRAKGEVRIARIIDS 292
Query: 320 PTSPPLAFSFTINPSGI 336
P P +F I GI
Sbjct: 293 PYLPQREAAFRITEEGI 309
>gi|303391399|ref|XP_003073929.1| DNA repair protein Rad51 [Encephalitozoon intestinalis ATCC 50506]
gi|303303078|gb|ADM12569.1| DNA repair protein Rad51 [Encephalitozoon intestinalis ATCC 50506]
Length = 334
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 113/261 (43%), Gaps = 31/261 (11%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+L T +D L GG G +TE+ G TGKTQ C +++ LP GG G +YI
Sbjct: 95 YLTTGSSEVDKLLNGGFESGSITEIFGEFRTGKTQLCHTVAVTCQLPPEQGGGGGKAMYI 154
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
D E TF S R+I + A F G+ E+ I + + ++ L K +
Sbjct: 155 DTEGTFRSERLIPI-AERF-------GLDPDEVMDNISYARAYNSDHQSQLLIKASAMMS 206
Query: 202 QNQVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257
+++ +L+IDS AL G E A H L+ ++ + +LAE R+ +++TNQV
Sbjct: 207 ESKYSVLIIDSATALYRTDFSGRGELGARQLH-LAKYLRSLVNLAETFRVAVIITNQVVS 265
Query: 258 QSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNV 316
++ ++K + G AHA T RL L G+ R +
Sbjct: 266 NVDGAVGMFAGDIKK----------------PIGGNIMAHASTTRLYLRKGRGETRICKI 309
Query: 317 EKSPTSPPLAFSFTINPSGIS 337
SP P F I GI+
Sbjct: 310 YDSPCLPESEAVFAITEQGIN 330
>gi|351698467|gb|EHB01386.1| DNA repair protein XRCC3, partial [Heterocephalus glaber]
Length = 349
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 153/351 (43%), Gaps = 43/351 (12%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSAL-ALVSEIVCPPFQTALLL 70
P+++A AR + + K+ L + +L + + +V+ L A S + TAL L
Sbjct: 10 PRTLAAAKRAR-LRSVKEVLHFSGPDLQRRTGLSSPDVQRLLTAAASHLRGQCTLTALQL 68
Query: 71 MEQ--RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
+Q R T+H L LD L GG+P +TEL G + +GKTQ L+L L
Sbjct: 69 HQQKERFPTQH--HRLSLGCPRLDRLLSGGLPLDGITELAGRSSSGKTQLALQLCLAVQF 126
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGA-----SSFP-EIFHSKGMAQEMAGRILVLQ 182
P +GGL+ G +YI E F S+R+ ++ A + P E+ S +I V
Sbjct: 127 PRQHGGLEAGAVYICTEDVFPSKRLRQLIAQPQLRADVPGEVVQSI----RFGDQIFVEH 182
Query: 183 PTSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP--LSWHISLIT 239
+ E + K+ + L + V+LLV+DS+ A + +A L + +
Sbjct: 183 AADVDALLECVSHKVPMLLSRGLVRLLVVDSVAAPFRCEFDSQASVARARLLQSLGATLR 242
Query: 240 SLAEFSRIPIVVTNQVRPQSHDESCL---YPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
L+ + P++ NQV P+ D + PF D + LG WA
Sbjct: 243 RLSSTFQSPVLCVNQVSPEVWDAGPVKGSVPFCPSPQD----------ERLCPALGITWA 292
Query: 297 HAVTIRLVLE---------AKSGQ--RFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +RL+ + SG R + V +P PP + S+T++ G+
Sbjct: 293 NQLLVRLMADRVREEEASLGPSGHPARTLRVVFAPHLPPCSCSYTVSEEGV 343
>gi|1706446|sp|P50265.1|DLH1_CANAL RecName: Full=Meiotic recombination protein DLH1; AltName:
Full=DMC1 homolog
gi|1145716|gb|AAC49400.1| Dlh1p [Candida albicans]
Length = 324
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 134/328 (40%), Gaps = 39/328 (11%)
Query: 17 NIFAARNITTAKDALSLTELELMK---LLDVELSEVRSALALVSEIVCPPFQTALLLMEQ 73
N + I + LS T L K L ++++ +++ A + + F A ++ E
Sbjct: 24 NKLKSAGICSITSVLSTTRRNLTKIKGLSEIKVEKIKEAAGKIKKY---GFLPATIVAES 80
Query: 74 RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYG 133
R H+ T K D L GG+ +TE+ G GKTQ C L + A LP G
Sbjct: 81 RTKVFHI----TTGSKQFDEILGGGIQSMSITEVFGEFRCGKTQLCHTLCVAAQLPTDMG 136
Query: 134 GLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT-ES 192
G +G V YID E TF R+ S E + G+ ++ + SE E
Sbjct: 137 GGEGRVAYIDTEGTFRPDRI-----RSIAERY---GVDADICLENISYARALNSEHQIEL 188
Query: 193 LEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPI 249
+E++ L + +LL++DS+ A + R Q L+ H+S +T +AE I +
Sbjct: 189 VEQLGNELAEGTFRLLIVDSIMACFRVDYSGRGELNERQQKLNQHLSNLTRVAEDYNIAV 248
Query: 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS 309
+TNQV+ + +K V G AHA R++L
Sbjct: 249 FLTNQVQSDPGASALFAAADGRK----------------PVGGHVLAHASATRILLRKGR 292
Query: 310 G-QRFMNVEKSPTSPPLAFSFTINPSGI 336
G +R ++ SP P + I GI
Sbjct: 293 GEERVAKLQDSPNMPEKECVYVIGEGGI 320
>gi|395838671|ref|XP_003792234.1| PREDICTED: DNA repair protein XRCC3 [Otolemur garnettii]
Length = 349
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 143/343 (41%), Gaps = 30/343 (8%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L + + EV+ L S + TAL L
Sbjct: 10 PRIIAAIKKAK-LKSVKEVLHFSGPDLQRATALSSLEVQHVLRTASLHLRGDSILTALHL 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
QR L LD LCGG+P +TEL G + GKTQ L+L L P
Sbjct: 69 HRQRKQFPAQHQRLSLGCPVLDGLLCGGLPLEGITELAGRSSAGKTQLALQLCLAVQFPQ 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQE---MAGRILVLQPTSLS 187
+GGL+ G +Y+ E F +RR+ ++ A G + +I V +
Sbjct: 129 QHGGLEAGAVYVCTEDVFPTRRLQQLMALQTQLRTDVPGNVVQKIRFGDQIFVEHVADVD 188
Query: 188 EFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA--PGQHPLSWHISLITSLAEF 244
E + +K+ + L + +L+VIDS+ A + +A P L S + L+
Sbjct: 189 TLLECVTQKVPILLSRGMARLVVIDSVAAPFRCEFDGQASVPRARRLQSLGSALRRLSWA 248
Query: 245 SRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLV 304
+ P++ NQV ++ E P D HI LG WA+ + +RL+
Sbjct: 249 FQTPVLCINQVT-EAVQEPSSAPRPPGSTD----------GHICPALGITWANQLLMRLM 297
Query: 305 LEAKSGQ-----------RFMNVEKSPTSPPLAFSFTINPSGI 336
+ + R + V +P P + S+T+N G+
Sbjct: 298 ADRLREEEAMLDRPGCPARTLRVLFAPHLPTSSCSYTVNAEGV 340
>gi|195108597|ref|XP_001998879.1| GI23388 [Drosophila mojavensis]
gi|193915473|gb|EDW14340.1| GI23388 [Drosophila mojavensis]
Length = 347
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 27/257 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GG+ G +TE+ G GKTQ C L++ LP G +G +YID
Sbjct: 107 LTTGSKELDKLLGGGIETGSITEIFGEFRCGKTQICHTLAVTCQLPISQNGGEGKALYID 166
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R+ S+ + ++ A + + + + + T+ ++ + ++
Sbjct: 167 TEGTFRPERL-----SAIAQRYNMDEAA--VLDNVACARAHNTDQQTQLVQMAAGMMFES 219
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ L+++DS AL + R A Q+ L + ++ LA+ + +V+TNQV Q
Sbjct: 220 RYALIIVDSAMALYRSEYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTAQVD 279
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKS 319
+ ++ +K + G AHA T RL L + K R + S
Sbjct: 280 GGASMFVADAKK----------------PIGGHIMAHASTTRLYLRKGKGDTRICKIYDS 323
Query: 320 PTSPPLAFSFTINPSGI 336
P P F I P GI
Sbjct: 324 PCLPESEAMFAILPEGI 340
>gi|407847641|gb|EKG03284.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi]
Length = 351
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 113/277 (40%), Gaps = 32/277 (11%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F + ++QR + T LD L GG+ +TE G TGKTQ L
Sbjct: 98 FTNGVTYLQQRGKVTRM----TTGSTALDQLLGGGIESMSITEAFGEFRTGKTQIAHTLC 153
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GG +G VIY+D ESTF R+ + A + A + ILV +
Sbjct: 154 VTCQLPTSMGGGNGKVIYVDTESTFRPERIKPIAARFGLD-------ADAVLNNILVARA 206
Query: 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240
+ L + + ++Q LLV+DS+ AL R A Q L+ +S +
Sbjct: 207 YTHEHQMHLLSMVAAKMAEDQFGLLVVDSITALFRVDFSGRGELAERQQKLAKMMSHLIK 266
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
LAE + + +TNQV S + + HI+ AHA T
Sbjct: 267 LAEEFNVAVYITNQVVADPGGASMF----------VADPKKPVGGHIL-------AHAST 309
Query: 301 IRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
RL L G QR + SP+ P + F+I+ GI
Sbjct: 310 TRLSLRKGRGDQRICKIYDSPSLPEVECVFSISEQGI 346
>gi|67594825|ref|XP_665902.1| Rad51 [Cryptosporidium hominis TU502]
gi|54656768|gb|EAL35671.1| Rad51 [Cryptosporidium hominis]
Length = 347
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 129/306 (42%), Gaps = 50/306 (16%)
Query: 56 VSEIVCPPFQTA---LLLMEQRAATEHLGGH-----LPTRLKGLDAALCGGVPFGVVTEL 107
+SE C ++A L+ M + TE+L T LD L GG+ G +TE+
Sbjct: 72 ISEQKCDKIKSACKELVAMGFCSGTEYLEARTNLIKFTTGSSQLDRLLQGGIETGSITEI 131
Query: 108 VGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM-------GASS 160
G TGKTQ C L++ LP + G +G ++ID E TF R++++ +
Sbjct: 132 FGEFRTGKTQLCHTLAVTCQLPVEHKGGEGKCLWIDTEGTFRPERIVQIADRFNLNASDC 191
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGV 220
I +++G E + L ++++ TES + L+++DS AL
Sbjct: 192 LDNIAYARGFNTEHQ---MDLLQSAVAMMTES-----------RFALMIVDSATALYRSE 237
Query: 221 HEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRIL 277
+ R A Q L + + +A+ + +V+TNQV M ++
Sbjct: 238 YNGRGELATRQSHLGQFLRALQKIADTFGVAVVITNQV-----------------MSKVD 280
Query: 278 KDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ + V + G AHA RL L+ G+ R + SP P +F+I GI
Sbjct: 281 AMAAMFQNDKVPIGGNIIAHASQTRLFLKKGRGETRICKIYDSPNLPEGDATFSITEGGI 340
Query: 337 SLLTDD 342
+ D+
Sbjct: 341 NDPKDE 346
>gi|66357650|ref|XP_626003.1| Rad51 [Cryptosporidium parvum Iowa II]
gi|46227223|gb|EAK88173.1| Rad51 [Cryptosporidium parvum Iowa II]
Length = 347
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 129/306 (42%), Gaps = 50/306 (16%)
Query: 56 VSEIVCPPFQTA---LLLMEQRAATEHLGGH-----LPTRLKGLDAALCGGVPFGVVTEL 107
+SE C ++A L+ M + TE+L T LD L GG+ G +TE+
Sbjct: 72 ISEQKCDKIKSACKELVAMGFCSGTEYLEARTNLIKFTTGSSQLDRLLQGGIETGSITEI 131
Query: 108 VGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM-------GASS 160
G TGKTQ C L++ LP + G +G ++ID E TF R++++ +
Sbjct: 132 FGEFRTGKTQLCHTLAVTCQLPVEHKGGEGKCLWIDTEGTFRPERIVQIADRFNLNASDC 191
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGV 220
I +++G E + L ++++ TES + L+++DS AL
Sbjct: 192 LDNIAYARGFNTEHQ---MDLLQSAVAMMTES-----------RFALMIVDSATALYRSE 237
Query: 221 HEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRIL 277
+ R A Q L + + +A+ + +V+TNQV M ++
Sbjct: 238 YNGRGELATRQSHLGQFLRALQKIADTFGVAVVITNQV-----------------MSKVD 280
Query: 278 KDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ + V + G AHA RL L+ G+ R + SP P +F+I GI
Sbjct: 281 AMAAMFQNDKVPIGGNIIAHASQTRLFLKKGRGETRICKIYDSPNLPEGDATFSITEGGI 340
Query: 337 SLLTDD 342
+ D+
Sbjct: 341 NDPKDE 346
>gi|397638534|gb|EJK73108.1| hypothetical protein THAOC_05289, partial [Thalassiosira oceanica]
Length = 385
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 136/331 (41%), Gaps = 73/331 (22%)
Query: 63 PFQTALLLMEQRAATEHLGGHLPTRL-----KGLDAALCGGVPFGVVTELVGPAGTGKTQ 117
P TA L+ + T H G R + LD L GGV +TE+VG G+GKTQ
Sbjct: 65 PATTAASLLRSKL-TNHSGTAQQNRQIVSFSQSLDVLLGGGVALAELTEIVGRPGSGKTQ 123
Query: 118 FCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA------ 171
++L + A LP+ YGG++G V+ ID E +++ M + S + H +G A
Sbjct: 124 LTMQLCVDARLPSKYGGVEGSVVVIDAEGSWSCSGMDRLWDMSVALVDHLRGSAARRVAA 183
Query: 172 -QEMAGR------------ILVLQPTSLSEF------------TESLEKIKVSLLQNQ-- 204
M GR ++ L P SL E T +L + LL+ +
Sbjct: 184 KNAMEGRADVPASENEINSLVSLTPESLLEGIHIFRVHDEPSQTSTLYSLPKFLLKQEEA 243
Query: 205 ---VKLLVIDSMEALVPGVHEQRAPGQ---------HPLSWHISLITSLAEFSRIPIVVT 252
VKL+VIDS+ A V A G H L+ + +T +A + +V
Sbjct: 244 GIPVKLVVIDSL-AFHYRVASSAAAGSGQSNSLSTTHNLTRMAAFLTDMANEFDLAVVAI 302
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQR 312
N + ++D+ + +V LG WAH+VT RL+++ +
Sbjct: 303 NHL--------------TTRIDKDSNSNGGSNTKLVPALGESWAHSVTSRLMIDHYRHPQ 348
Query: 313 F-MN------VEKSPTSPPLAFSFTINPSGI 336
F MN + KSP PP I GI
Sbjct: 349 FDMNEVRSVSLLKSPHKPPGTALLLITEKGI 379
>gi|242085564|ref|XP_002443207.1| hypothetical protein SORBIDRAFT_08g015360 [Sorghum bicolor]
gi|241943900|gb|EES17045.1| hypothetical protein SORBIDRAFT_08g015360 [Sorghum bicolor]
Length = 342
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 140/319 (43%), Gaps = 52/319 (16%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR L T + LD L
Sbjct: 62 DLLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQL----TTGSRELDQILD 117
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G +GKTQ C L + LP GG +G +YID E TF R++++
Sbjct: 118 GGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPERLLQI 177
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L+V
Sbjct: 178 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MVETRFALMV 223
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H L+ + + LA+ + +V+TNQV Q +
Sbjct: 224 VDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVITNQVVAQVDGAAVF 282
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPL 325
Q++ + G AHA T RL L + G+R + K +SP L
Sbjct: 283 AGPQIKPIG-----------------GNIMAHASTTRLFL--RKGRREERICKVVSSPCL 323
Query: 326 AFS---FTINPSGISLLTD 341
A + F I+ G++ + D
Sbjct: 324 AEAEARFQISSEGVTDVKD 342
>gi|242069171|ref|XP_002449862.1| hypothetical protein SORBIDRAFT_05g024565 [Sorghum bicolor]
gi|241935705|gb|EES08850.1| hypothetical protein SORBIDRAFT_05g024565 [Sorghum bicolor]
Length = 340
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 133/317 (41%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S+IV F +A L QR + T + LD L
Sbjct: 57 DLVQIKGISEAKVDKIIEAASKIVPLGFTSASQLHAQRLEIIQV----TTGSRELDKILE 112
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 113 GGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQI 172
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L+V
Sbjct: 173 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MIETRFALMV 218
Query: 210 IDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H + SL EF + +V+TNQV Q D S +
Sbjct: 219 VDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFG-VAVVITNQVVAQV-DGSAM 276
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPP 324
+ I + G AHA T RL L G +R V SP
Sbjct: 277 FA----------------GPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAE 320
Query: 325 LAFSFTINPSGISLLTD 341
F I G++ + D
Sbjct: 321 AEARFQIASEGVADVKD 337
>gi|297735394|emb|CBI17834.3| unnamed protein product [Vitis vinifera]
Length = 260
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 93/219 (42%), Gaps = 44/219 (20%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGVP +TELV +G+GKTQ CL+L L A LP GGL +YI E F S
Sbjct: 25 LDRCLAGGVPCNSITELVAESGSGKTQLCLQLVLSAQLPTSLGGLAASSLYIHSEFPFPS 84
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
RR+ ++ S F S + V+L+VI
Sbjct: 85 RRLQQLSQS-----------------------------FRSSYSHLP-------VRLIVI 108
Query: 211 DSMEALVPGVHEQRA---PGQHPLSWHIS-LITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
DS+ AL G E + L + IS + +LAE + +VVTNQV L
Sbjct: 109 DSIAALFRGEFENTPFDLKRRSSLFFKISGKLKALAERFGLAVVVTNQVVDFVGQAGGLN 168
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL 305
+V + + R + A LG WA+ V RL L
Sbjct: 169 GLRVGNLGSLWSSGRR----VCAALGLSWANCVNSRLFL 203
>gi|71659624|ref|XP_821533.1| meiotic recombination protein DMC1 [Trypanosoma cruzi strain CL
Brener]
gi|70886915|gb|EAN99682.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi]
Length = 351
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 113/277 (40%), Gaps = 32/277 (11%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F + ++QR + T LD L GG+ +TE G TGKTQ L
Sbjct: 98 FTNGVTYLQQRGKVTRM----TTGSTALDQLLGGGIESMSITEAFGEFRTGKTQIAHTLC 153
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GG +G VIY+D ESTF R+ + A + A + ILV +
Sbjct: 154 VTCQLPTSMGGGNGKVIYVDTESTFRPERIKPIAARFGLD-------ADAVLNNILVARA 206
Query: 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240
+ L + + ++Q LLV+DS+ AL R A Q L+ +S +
Sbjct: 207 YTHEHQMHLLSMVAAKMAEDQFGLLVVDSITALFRVDFSGRGELAERQQKLAKMMSHLIK 266
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
LAE + + +TNQV S + + HI+ AHA T
Sbjct: 267 LAEEFNVAVYITNQVVADPGGASMF----------VADPKKPVGGHIL-------AHAST 309
Query: 301 IRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
RL L G QR + SP+ P + F+I+ GI
Sbjct: 310 TRLSLRKGRGDQRVCKIYDSPSLPEVECVFSISEQGI 346
>gi|358332289|dbj|GAA50958.1| DNA repair protein RAD51 [Clonorchis sinensis]
Length = 341
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 111/270 (41%), Gaps = 42/270 (15%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
L T K LD L GG+ G +TEL G TGKTQ C L++ LP GG +G +YI
Sbjct: 103 QLTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPIDMGGGEGKCLYI 162
Query: 143 DVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK 195
D E TF R++ + G+ + +++ + +L+ +SE
Sbjct: 163 DTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAYNTDHQMELLINAAAMMSE------- 215
Query: 196 IKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
++ LLV+DS AL + R + Q L+ + + LA+ + +V+T
Sbjct: 216 -------SRYALLVVDSATALYRTDYSGRGELSARQMHLARFLRTLLRLADEFGVAVVIT 268
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ- 311
NQV Q D + ++ +K + G HA T RL L G+
Sbjct: 269 NQVVAQV-DGAAMFTADPKK----------------PIGGNIMGHASTTRLYLRKGRGET 311
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
R + SP P + I P GI D
Sbjct: 312 RICKIYDSPCLPEAEAMYAILPDGIGDAKD 341
>gi|385301680|gb|EIF45853.1| dna repair protein rad51 [Dekkera bruxellensis AWRI1499]
Length = 396
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 133/298 (44%), Gaps = 35/298 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
L S+IV F TA ++RA E + L T K LD L GG+ G +TE+ G
Sbjct: 124 LTEASKIVPLGFTTATEFHQRRA--ELI--TLTTGSKQLDTLLGGGIETGAITEVFGEFR 179
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ 172
TGK+Q C L++ A LP GG +G +YID E TF R++ + A F G+ +
Sbjct: 180 TGKSQLCHTLAITAQLPVDMGGGEGKCLYIDTEGTFRPVRLVSI-ARRF-------GLDE 231
Query: 173 EMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQ 228
A + + + + L++ + Q++ LL++DS+ AL + RA Q
Sbjct: 232 NEALDNVAYARAYNADHQMQLLKQAAQMMSQSRFSLLIVDSVMALYRTDYSGRAELSARQ 291
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIV 288
++ + + LA+ I +++TNQV Q D S ++ +K
Sbjct: 292 MHVAKFMRALQRLADEFGIAVLITNQVVAQV-DSSAIFNPDPKK---------------- 334
Query: 289 AVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTE 345
+ G AH+ T RL + G+ R + SP F I GI + +DGTE
Sbjct: 335 PIGGNIIAHSSTTRLYFKKGKGRNRICKIYDSPCLAETETVFAIGEGGI-MDPNDGTE 391
>gi|112984536|ref|NP_001037484.1| Rad51 homolog [Bombyx mori]
gi|2058709|gb|AAB53330.1| Rad51 homolog [Bombyx mori]
Length = 338
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 123/296 (41%), Gaps = 46/296 (15%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA ++RA L T K LD L GG+ G +TE+ G
Sbjct: 74 LAEASKLVPMGFTTATEFHQKRAEIIQL----TTGSKELDRLLGGGIETGSITEIFGEFR 129
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM-------GASSFPEIF 165
TGKTQ C L++ LP G +G +YID E TF R++ + GA+ +
Sbjct: 130 TGKTQLCHTLAVTCQLPIEQSGGEGKCMYIDTEGTFRPERLLAVAQRYGMEGAAVLDNVA 189
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA 225
+++ + ++LV ++E ++ L+++DS AL + R
Sbjct: 190 YARAYNTDHQTQLLVQACAMMAE--------------SRYSLIIVDSATALYRTDYSGRG 235
Query: 226 ---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR 282
Q L + ++ LA+ + +++TNQV Q D ++ +K
Sbjct: 236 ELNSRQLHLGRFMRMLLRLADEFGVAVIITNQVVAQV-DSVGVFNADTKK---------- 284
Query: 283 YYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L G R + SP P F I+ GI+
Sbjct: 285 ------PIGGHIIAHASTTRLYLRKGRGDNRVCKIYDSPCLPETEAMFAISAEGIT 334
>gi|71663769|ref|XP_818873.1| meiotic recombination protein DMC1 [Trypanosoma cruzi strain CL
Brener]
gi|70884148|gb|EAN97022.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi]
Length = 351
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 113/277 (40%), Gaps = 32/277 (11%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F + ++QR + T LD L GG+ +TE G TGKTQ L
Sbjct: 98 FTNGVTYLQQRGKVTRM----TTGSTALDQLLGGGIESMSITEAFGEFRTGKTQIAHTLC 153
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GG +G VIY+D ESTF R+ + A + A + ILV +
Sbjct: 154 VTCQLPTSMGGGNGKVIYVDTESTFRPERIKPIAARFGLD-------ADAVLNNILVARA 206
Query: 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240
+ L + + ++Q LLV+DS+ AL R A Q L+ +S +
Sbjct: 207 YTHEHQMHLLSMVAAKMAEDQFGLLVVDSITALFRVDFSGRGELAERQQKLAKMMSHLIK 266
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
LAE + + +TNQV S + + HI+ AHA T
Sbjct: 267 LAEEFNVAVYITNQVVADPGGASMF----------VADPKKPVGGHIL-------AHAST 309
Query: 301 IRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
RL L G QR + SP+ P + F+I+ GI
Sbjct: 310 TRLSLRKGRGDQRVCKIYDSPSLPEVECVFSISEQGI 346
>gi|363807880|ref|NP_001242445.1| uncharacterized protein LOC100780427 [Glycine max]
gi|255635337|gb|ACU18022.1| unknown [Glycine max]
Length = 325
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 17/203 (8%)
Query: 62 PPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLK 121
PP L L+E +H+ L T +G+DA L GG+ G +TELVG + +GKTQ CL
Sbjct: 70 PPLLNGLQLLEDAQRNKHV---LSTGCEGIDALLRGGLREGQLTELVGSSSSGKTQACL- 125
Query: 122 LSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKG--MAQEMAGRIL 179
LS + H VIY+D ++F+ +R+ S IF ++ M +++ RI+
Sbjct: 126 LSASTVVAKH----KSSVIYLDTGNSFSPQRIAHFVGQSSGHIFGNQADHMLKKVLDRII 181
Query: 180 VLQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQHPLSW 233
+ + + L ++K++L V+LL++DS+ +L+ + P H L
Sbjct: 182 CYSVFDVYQMFDVLHQLKINLRSEIVKSNQHVRLLIVDSISSLITPILGGSGPQGHALMI 241
Query: 234 HIS-LITSLAEFSRIPIVVTNQV 255
L+ LA I ++VTN V
Sbjct: 242 SAGFLLKKLAHEHNIAVLVTNHV 264
>gi|110742988|dbj|BAE99388.1| RAD51 homolog [Arabidopsis thaliana]
Length = 342
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 136/317 (42%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + + + LD L
Sbjct: 62 DLLQIKGISDAKVDKIVEAASKLVPLGFTSASQLHAQRQEIIQI----TSGSRELDKVLE 117
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G +GKTQ C L + LP GG +G +YI E TF +R++++
Sbjct: 118 GGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIGAEGTFRPQRLLQI 177
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + LL+
Sbjct: 178 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MIETRFALLI 223
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H L+ + + LA+ + +V+TNQV Q D S L
Sbjct: 224 VDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVITNQVVAQV-DGSAL 281
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPP 324
+ + G AHA T RL L + ++ +R V SP P
Sbjct: 282 FA----------------GPQFKPIGGNIMAHATTTRLALRKGRAEERICKVISSPCLPE 325
Query: 325 LAFSFTINPSGISLLTD 341
F I+ G++ D
Sbjct: 326 AEARFQISTEGVTDCKD 342
>gi|383863607|ref|XP_003707271.1| PREDICTED: DNA repair protein RAD51 homolog 1-like [Megachile
rotundata]
Length = 341
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 129/297 (43%), Gaps = 33/297 (11%)
Query: 46 LSEVRSA--LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGV 103
+SEV++ L S++V F++A + + R+ + T LD L GG+ G
Sbjct: 67 ISEVKADKILQEASKLVVMGFKSATEIHQTRSNIVFV----TTGSSELDRLLGGGIETGS 122
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163
+TE+ G +GKTQ C L++ LP GG +G +YID E TF R+I + E
Sbjct: 123 ITEIFGEFRSGKTQLCHTLAVNCQLPIDMGGAEGKCLYIDTEGTFRPERLI-----AVAE 177
Query: 164 IFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ 223
+ G + + + + T+ L + + +++ LL++DS +L +
Sbjct: 178 RYKIAG--DSVLDNVACARAYNTDHQTKLLIQASAMMTESRYALLIVDSATSLYRTDYSG 235
Query: 224 R---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDR 280
R + Q L+ + ++ +A+ + +V+TNQV Q + ++ +K
Sbjct: 236 RGELSARQTHLARFLRMLLRIADEHGVAVVITNQVVAQVDGAASMFGGDQKK-------- 287
Query: 281 TRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AH+ T RL L G+ R + SP P F IN GI
Sbjct: 288 --------PIGGNIIAHSSTTRLYLRKGRGETRICKIYDSPCLPESEAMFAINADGI 336
>gi|401828066|ref|XP_003888325.1| DNA repair protein Rad51 [Encephalitozoon hellem ATCC 50504]
gi|392999597|gb|AFM99344.1| DNA repair protein Rad51 [Encephalitozoon hellem ATCC 50504]
gi|396082442|gb|AFN84051.1| DNA repair protein Rad51 [Encephalitozoon romaleae SJ-2008]
Length = 334
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 113/261 (43%), Gaps = 31/261 (11%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+L T +D L GG G +TE+ G TGKTQ C +++ LP GG G +YI
Sbjct: 95 YLTTGSSEVDKLLNGGFESGSITEIFGEFRTGKTQLCHTVAVTCQLPPEQGGGGGKAMYI 154
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
D E TF S R++ + A F G+ E+ I + + ++ L K +
Sbjct: 155 DTEGTFRSERLVPI-AERF-------GLDPNEVMDNISYARAYNSDHQSQLLIKASAMMS 206
Query: 202 QNQVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257
+++ +L+IDS AL G E A H L+ ++ + +LAE R+ +++TNQV
Sbjct: 207 ESKYSVLIIDSATALYRTDFSGRGELGARQLH-LAKYLRSLVNLAETFRVAVIITNQVVS 265
Query: 258 QSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNV 316
++ ++K + G AHA T RL L G+ R +
Sbjct: 266 NVDGAVGMFAGDIKK----------------PIGGNIMAHASTTRLYLRKGRGETRICKI 309
Query: 317 EKSPTSPPLAFSFTINPSGIS 337
SP P F I GI+
Sbjct: 310 YDSPCLPESEAVFAITEQGIN 330
>gi|440797758|gb|ELR18834.1| RAD51, putative [Acanthamoeba castellanii str. Neff]
Length = 348
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 143/358 (39%), Gaps = 45/358 (12%)
Query: 6 ISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSE----IVC 61
I+ + LP ++ N +D +EL K L V E S L + E
Sbjct: 9 ITTLPLPPTLKNKIVQAGFRDVRDFDGYRPVELAKELRVTQEEALSILRTIKENTSATTA 68
Query: 62 PPFQTALLLMEQRAATEHL----GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQ 117
P L E + A E + + T + +D L GVP G +TE G G GKTQ
Sbjct: 69 AP--AGSLFAEGKTAFEMITQTENRFVRTMCEDIDQMLGAGVPVGQLTEFCGVPGIGKTQ 126
Query: 118 FCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177
++L+ +P +GG G IYI +F R++EM A + + + A G+
Sbjct: 127 IGMQLATSVQIPKEFGGSGGHCIYI---GSFVVERVMEM-AQAIIDFMQQQAQASNDPGK 182
Query: 178 ILVLQPTSLSEFTESLEKIK-------VSLLQN---------QVKLLVIDSMEALVPGVH 221
+ ++ + + + ++LL +V+L+VIDS+
Sbjct: 183 VQAAAALTVEDMLRHIHYYRIHDYVEQIALLNTLPAFLKEHPEVQLVVIDSITFHFRHDF 242
Query: 222 EQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
+ L+ + SLA+ R + VT +V ++ + +L DR
Sbjct: 243 DDYMARTRVLTSMAQTLMSLADEFR--LAVTTKVTERTQGSA------------MLGDRD 288
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLL 339
+ ++ LG W HA T R++L + GQR+ ++ K P+ F + GI L
Sbjct: 289 S-NNQLIPALGESWGHACTNRVILYWRDGQRYAHLHKCPSQESKTVPFVVLSDGIRNL 345
>gi|156084788|ref|XP_001609877.1| Rad51 protein [Babesia bovis T2Bo]
gi|154797129|gb|EDO06309.1| Rad51 protein, putative [Babesia bovis]
Length = 346
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 142/338 (42%), Gaps = 45/338 (13%)
Query: 19 FAARNITTAKDALSLTELELMKLLDVELSEVRS----ALALVSEIV---CPP-FQTALLL 70
F R+I K A +T + ++ L EV+ +A + EIV CPP TA
Sbjct: 36 FLQRDIDVLKAAGYVTLDSIAQVASKTLLEVKGLSEQKVAKIKEIVKELCPPDICTAAEY 95
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+E R T LDA L GG+ G +TE++G TGKTQ C L++ + LP
Sbjct: 96 LECRLNLIKF----TTGSTALDALLQGGIESGSITEIIGDFSTGKTQLCHTLAITSQLPI 151
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ-EMAGRILVLQPTSLSEF 189
G +G ++ID +++F R+ I + G++ E I+ ++ ++ +
Sbjct: 152 EQNGGEGKCLWIDTQNSFRPERL--------GPIANRFGLSHAECVANIVYVKVSNTEQQ 203
Query: 190 TESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSR 246
+ L + + Q++ +L++DS AL + R A Q L + + LA+
Sbjct: 204 FDMLVEAAHYMAQSRFAMLIVDSATALYRTDYTGRGELAARQMSLGKYFRALKRLADIYG 263
Query: 247 IPIVVTNQVRPQSHDESCLYPFQVQKMDRIL--KDRTRYYSHIVAVLGFHWAHAVTIRLV 304
+ +VVTNQV +V M + D+ H+V A RL
Sbjct: 264 VAVVVTNQVMA-----------RVDNMSSFMGGNDKVPVGGHVV-------AQNTQTRLF 305
Query: 305 L-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
L +A+ R V SP+ P F I GI D
Sbjct: 306 LRKARGNSRVCKVYNSPSLPEGEAVFAIAEGGIVDYDD 343
>gi|209875975|ref|XP_002139430.1| Rad51 protein [Cryptosporidium muris RN66]
gi|209555036|gb|EEA05081.1| Rad51 protein, putative [Cryptosporidium muris RN66]
Length = 351
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 131/314 (41%), Gaps = 52/314 (16%)
Query: 50 RSALAL--VSEIVCPPFQTA---LLLMEQRAATEHLGGH-----LPTRLKGLDAALCGGV 99
RS L + +SE C +TA L+ M + +E+L T K LD L GG+
Sbjct: 67 RSLLCIKGISEQKCEKIKTACKDLVAMGFCSGSEYLQARTNLIRFTTGSKQLDRLLQGGI 126
Query: 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM--- 156
G +TE+ G TGKTQ C L++ LP + G +G ++ID E TF R++++
Sbjct: 127 ETGNITEIFGEFRTGKTQLCHTLAVTCQLPVEHNGGEGKCLWIDTEGTFRPERIVQIAER 186
Query: 157 ----GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDS 212
+ I +++G E +L +SE ++ L+++DS
Sbjct: 187 FSLNASDCLDNIAYARGFNTEHQMDLLQSAVAMMSE--------------SRFALMIVDS 232
Query: 213 MEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQ 269
AL + R A Q L + + +A+ + +++TNQV +
Sbjct: 233 ATALYRSEYNGRGELASRQSHLGQFLRGLQKIADTFGVAVIITNQVMS-----------K 281
Query: 270 VQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFS 328
V M I ++ V + G AHA RL L + ++ R + SP P +
Sbjct: 282 VDAMAAIFQNDK------VPIGGNIIAHASQTRLYLKKGRAETRICKIYDSPNLPEGDTA 335
Query: 329 FTINPSGISLLTDD 342
F I GI+ D+
Sbjct: 336 FAITEGGINDPNDE 349
>gi|405123640|gb|AFR98404.1| MmLim15 protein [Cryptococcus neoformans var. grubii H99]
Length = 330
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 129/304 (42%), Gaps = 34/304 (11%)
Query: 38 LMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCG 97
L+K+ + ++V ++I+ P F T + ++RA ++ T K +DA L G
Sbjct: 50 LLKIKGLSEAKVEKLKETCTKILPPAFLTGTEIADRRANVVYI----TTGSKSVDAMLGG 105
Query: 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157
G+ +TE+ G TGKTQ C L + LP GG G V YID E TF R+ +
Sbjct: 106 GIATQSITEVFGEYRTGKTQLCHTLCVSTQLPEDQGGGSGKVAYIDTEGTFRPDRVRAV- 164
Query: 158 ASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQV-KLLVIDSMEA 215
A F G+ MA +L + S + L + + ++ + KLL++DS+
Sbjct: 165 ADRF-------GVDSNMALDNVLCARAWSSEHQCDLLVDLAIRFVEERAYKLLIVDSIMN 217
Query: 216 LVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQK 272
L + R + Q L+ ++ + LAE I +V+TNQV+ + K
Sbjct: 218 LFRQDYSGRGELSERQQKLNQFLARLQKLAEEFNIAVVLTNQVQADPGAAAMFAAASSAK 277
Query: 273 MDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTI 331
V G AHA R+ L G +R ++ SP P ++T+
Sbjct: 278 ----------------PVGGHILAHASATRIALRKGRGDERIAKLQDSPDMPEGEATYTL 321
Query: 332 NPSG 335
G
Sbjct: 322 RTGG 325
>gi|170035198|ref|XP_001845458.1| DNA repair protein RAD51 [Culex quinquefasciatus]
gi|167877010|gb|EDS40393.1| DNA repair protein RAD51 [Culex quinquefasciatus]
Length = 349
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 109/266 (40%), Gaps = 42/266 (15%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
L T K LD L GG+ G +TEL G TGKTQ C L++ LP G +G +YI
Sbjct: 111 QLTTGSKELDKLLGGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPVSQNGGEGKCLYI 170
Query: 143 DVESTFTSRRMIE-------MGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK 195
D E TF R++ +G+ + +++ + ++LV ++E
Sbjct: 171 DTEGTFRPERLLAVADRYKLVGSDVLDNVAYARAYNSDHQMQLLVQASAMMAE------- 223
Query: 196 IKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVT 252
++ LL++DS AL + R Q L + ++ LA+ + +++T
Sbjct: 224 -------SRYALLIVDSATALFRTDYAGRGELNARQVNLGKFLRMLLRLADEFGVAVIIT 276
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ- 311
NQV Q + P + + HI+ AHA T RL L G+
Sbjct: 277 NQVVAQVDASAMFTPDPKKPIG----------GHII-------AHASTTRLYLRKGRGET 319
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGIS 337
R + SP P + IN GI
Sbjct: 320 RVCKIYDSPCLPESEAMYAINADGIG 345
>gi|134118469|ref|XP_772121.1| hypothetical protein CNBM1660 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254728|gb|EAL17474.1| hypothetical protein CNBM1660 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 330
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 129/304 (42%), Gaps = 34/304 (11%)
Query: 38 LMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCG 97
L+K+ + ++V ++I+ P F T + ++RA ++ T K +DA L G
Sbjct: 50 LLKIKGLSEAKVEKLKETCTKILPPAFLTGTEIADRRANVVYI----TTGSKSVDAMLGG 105
Query: 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157
G+ +TE+ G TGKTQ C L + LP GG G V YID E TF R+ +
Sbjct: 106 GIATQSITEVFGEYRTGKTQLCHTLCVSTQLPEDQGGGSGKVAYIDTEGTFRPDRVRAV- 164
Query: 158 ASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQV-KLLVIDSMEA 215
A F G+ MA +L + S + L + + ++ + KLL++DS+
Sbjct: 165 ADRF-------GVDSNMALDNVLCARAWSSEHQCDLLVDLAIRFVEERAYKLLIVDSIMN 217
Query: 216 LVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQK 272
L + R + Q L+ ++ + LAE I IV+TNQV+ + K
Sbjct: 218 LFRQDYSGRGELSERQQKLNQFLARLQKLAEEFNIAIVLTNQVQADPGAAAMFAAASSAK 277
Query: 273 MDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTI 331
V G AHA R+ L G +R ++ SP P ++T+
Sbjct: 278 ----------------PVGGHILAHASATRIALRKGRGDERIAKLQDSPDMPEGEATYTL 321
Query: 332 NPSG 335
G
Sbjct: 322 RTGG 325
>gi|162457934|ref|NP_001104919.1| DNA repair protein RAD51 homolog B [Zea mays]
gi|55976630|sp|Q9XED7.1|R51A2_MAIZE RecName: Full=DNA repair protein RAD51 homolog B; AltName:
Full=Rad51-like protein B; Short=RAD51B; AltName:
Full=ZmRAD51b
gi|4886754|gb|AAD32030.1|AF079429_1 RAD51 homolog RAD51B [Zea mays]
gi|223945143|gb|ACN26655.1| unknown [Zea mays]
gi|414878278|tpg|DAA55409.1| TPA: DNA repair protein RAD51-like protein B [Zea mays]
Length = 340
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 135/317 (42%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR L T + LD L
Sbjct: 60 DLLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQL----TTGSRELDQILD 115
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 116 GGIETGSITEMYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRILQI 175
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L+V
Sbjct: 176 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MVETRFALMV 221
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H L+ + + LA+ + +V+TNQV Q +
Sbjct: 222 VDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVITNQVVAQVDGAAMF 280
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPP 324
Q++ + G AHA T RL L G +R V SP
Sbjct: 281 AGPQIKPIG-----------------GNIMAHASTTRLFLRKGRGEERICKVISSPCLAE 323
Query: 325 LAFSFTINPSGISLLTD 341
F I+ G++ + D
Sbjct: 324 AEARFQISSEGVTDVKD 340
>gi|300175731|emb|CBK21274.2| unnamed protein product [Blastocystis hominis]
Length = 292
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 111/252 (44%), Gaps = 30/252 (11%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ +TE+ G TGKTQ L + A LP+ G +G VI++D E TF
Sbjct: 60 LDTLLGGGIETMSITEIFGEFRTGKTQLAHTLCVTAQLPSEMHGANGKVIFLDTEGTFRP 119
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLL 208
+R++E+ + G E+ IL+ + + + + + ++++ LL
Sbjct: 120 QRVVEIAGR-----YGLNG--DEVLDNILLARAYTHEQQMDVITAAAAKIVEDNSPYHLL 172
Query: 209 VIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
V+DS+ AL + R A Q L H+S + LAE + +V+ NQV + D
Sbjct: 173 VVDSITALFRVDYSGRGELAERQQKLGRHLSALKKLAEEFNVAVVIINQV---TADPGAA 229
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPP 324
F +KD + + G AHA T RL + G QR V SP
Sbjct: 230 AMF--------VKDTKK------PIGGNIIAHASTTRLYFKKGKGEQRICKVYDSPDLAE 275
Query: 325 LAFSFTINPSGI 336
+F I P G+
Sbjct: 276 NEATFAIGPQGV 287
>gi|145499122|ref|XP_001435547.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402680|emb|CAK68150.1| unnamed protein product [Paramecium tetraurelia]
Length = 337
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 142/342 (41%), Gaps = 54/342 (15%)
Query: 19 FAARNITTAKDALSLT--------ELELMKLLDVELSEVRSALALVSEIVCPPFQTALLL 70
F A +I KDA T + LM + + +++ + V+++V F+ A +
Sbjct: 31 FGAVDIQRLKDAGFTTCESIAYTAKKNLMNIKGMTDAKIEKLVEAVAKLVVNQFKPATDV 90
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
++QR H+ T D L GG+ G +TE+ G TGK+Q C L++ +
Sbjct: 91 LKQRERIVHI----STGSTKFDKLLRGGIETGGITEIFGEFRTGKSQICHTLAVTCQMND 146
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT 190
G G +YID E TF R+ E+ A F G VL+ S +
Sbjct: 147 GKGRPGGKCLYIDTEGTFRPERLSEI-AKRFE------------LGIEEVLENVSFARAY 193
Query: 191 ESLEKIKVSLLQ-------NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240
E++K+ L+Q ++ LL++DS AL + R + Q+ L + +
Sbjct: 194 NVDEQMKL-LIQACNLMSTDKYALLIVDSATALYRTDYLGRGELSARQNHLGKFLRNLQR 252
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
LA+ + +V+TNQV Q E + QK + G AHA T
Sbjct: 253 LADEFNVAVVITNQVMSQV--EGTMMAMGDQKK---------------PIGGNIMAHAST 295
Query: 301 IRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
RL L G+ R + + SP P +TI+P GI D
Sbjct: 296 TRLYLRKGRGENRIVKIYDSPCLPESEEQYTISPGGIDDCAD 337
>gi|225717836|gb|ACO14764.1| DNA repair protein RAD51 homolog 1 [Caligus clemensi]
Length = 346
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 112/270 (41%), Gaps = 42/270 (15%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T K LD L GG+ G +TEL G TGK+Q C L++ LP +GG +G +YI
Sbjct: 108 QITTGSKELDKLLKGGIETGSITELFGEFRTGKSQLCHTLAVTCQLPIDHGGAEGKCLYI 167
Query: 143 DVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK 195
D E TF R++ + G + +++ + ++L+ ++E
Sbjct: 168 DTEGTFRPERLLAVAERYSLSGNDVLDNVAYARAYNSDHQSQLLIQASAMMAE------- 220
Query: 196 IKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
++ L+++DS AL + R + Q L+ + ++ LA+ + +V+T
Sbjct: 221 -------SRYALIIVDSSTALYRTDYSGRGELSTRQMHLARFLRMLLRLADEFGVGVVIT 273
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-Q 311
NQV Q D + ++ +K + G AHA T RL G Q
Sbjct: 274 NQVVAQV-DGAAMFAADPKK----------------PIGGNIMAHASTTRLYFRKGRGEQ 316
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
R + SP F IN GI D
Sbjct: 317 RICKIYDSPCLAEGEAVFAINADGIGDAKD 346
>gi|449701818|gb|EMD42564.1| DNA repair protein RAD51C,putative [Entamoeba histolytica KU27]
Length = 283
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
++PT + +D L GG+ G +T++VG G+GK+Q C++++ LP GGL+ IY
Sbjct: 39 NIPTFNQEIDQFLNGGISLGEITQIVGFPGSGKSQLCMQIACNVQLPEEIGGLNSESIYY 98
Query: 143 DVESTFT-SR--RMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVS 199
D S F SR RM E +S+PE K +E+ +I V QP + SL I
Sbjct: 99 DSYSQFCISRVQRMAECICASYPEY---KLNVKEILEKIHVYQPHDIVSLCSSLLSINNK 155
Query: 200 LLQNQVKLLVIDSM 213
L N+VK+++IDS+
Sbjct: 156 L--NKVKVIIIDSI 167
>gi|353236565|emb|CCA68557.1| related to DMC1-Meiosis-specific protein [Piriformospora indica DSM
11827]
Length = 355
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 131/313 (41%), Gaps = 46/313 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+K+ + ++V V +I+ F T + + E+R + T K +DA L
Sbjct: 75 QLLKIKGLSEAKVDKIKEAVQKILGSSFSTGVEVSEKRKRVTSI----STGSKAVDAILG 130
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ ++E+ G TGKTQ +S+LA LPA GG G V YID E TF R+ +
Sbjct: 131 GGIQTQSISEVYGEFRTGKTQLAHTMSVLAQLPADMGGGGGKVAYIDTEGTFRPDRIRAI 190
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G ++ I +++ E ++ T +E + KL++
Sbjct: 191 ADRFGVDGETALSNILYARAFNSEHQMELINEATTRFAE-------------EKDYKLMI 237
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS+ AL R + Q L+ +S ++ +AE + I++TNQV+ D
Sbjct: 238 VDSIMALFRTDFSGRGELSERQQKLASMLSKLSKIAEEYNLAILLTNQVQS---DPGATM 294
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFH-WAHAVTIRLVLEAKSG-QRFMNVEKSPTSPP 324
F + +G H AHA R+ L G +R + SP P
Sbjct: 295 TF--------------VAGGALKPIGGHILAHASATRMFLRKGRGEERVAKLVDSPDRPE 340
Query: 325 LAFSFTINPSGIS 337
++ ++ G S
Sbjct: 341 SEATYKLDEGGWS 353
>gi|145492218|ref|XP_001432107.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399216|emb|CAK64710.1| unnamed protein product [Paramecium tetraurelia]
Length = 340
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 143/342 (41%), Gaps = 51/342 (14%)
Query: 19 FAARNITTAKDALSLT--------ELELMKLLDVELSEVRSALALVSEIVCPPFQTALLL 70
F A +I KDA T + LM + + +++ + V+++V F+ A +
Sbjct: 31 FGAVDIQRLKDAGFTTCESIAYTAKKNLMNIKGMTDAKIEKLVEAVAKLVVNQFKPATDV 90
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
++QR H+ T D L GG+ G +TE+ G TGK+Q C L++ +
Sbjct: 91 LKQRERIVHI----STGSTKFDKLLRGGIETGGITEIFGEFRTGKSQICHTLAVTCQMND 146
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT 190
G G +YID E TF R+ E+ A F G VL+ S +
Sbjct: 147 ARGRPGGKCLYIDTEGTFRPERLSEI-AKRFE------------LGIEEVLENVSFARAY 193
Query: 191 ESLEKIKVSLLQ-------NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240
E++K+ L+Q ++ LL++DS AL + R + Q+ L + +
Sbjct: 194 NVDEQMKL-LVQACNLMSTDKYALLIVDSATALYRTDYLGRGELSARQNHLGKFLRNLQR 252
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
LA+ + +V+TNQV Q C + D+ + + G AHA T
Sbjct: 253 LADEFNVAVVITNQVMSQVEGFYCTMM--------AMGDQKK------PIGGNIMAHAST 298
Query: 301 IRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
RL L G+ R + + SP P +TI+P GI D
Sbjct: 299 TRLYLRKGRGENRIVKIYDSPCLPESEEQYTISPGGIDDCAD 340
>gi|238814375|ref|NP_001154949.1| RecA homolog RAD51 [Nasonia vitripennis]
Length = 340
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 124/305 (40%), Gaps = 33/305 (10%)
Query: 38 LMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCG 97
LM + + + L S++V F+TA + RA ++ T LD L G
Sbjct: 60 LMAIKGISEGKADKILQEASKLVAMGFKTAAEVHMIRANIVYI----TTGSAELDRLLGG 115
Query: 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157
G+ G +TE+ G TGK+Q C L++ LP GG + IYID E TF R+I
Sbjct: 116 GIETGSITEIFGEFRTGKSQLCHTLAVNCQLPVDMGGAEAKCIYIDTEGTFRPERLI--- 172
Query: 158 ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217
+ E ++ G + + + + T+ L K + +++ LL++DS AL
Sbjct: 173 --AVAERYNING--DSVLDNVATARAYNSDHQTQLLIKASAMMSESRYGLLIVDSATALY 228
Query: 218 ----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
G E A H + L+ EF +V+TNQV + ++ +K
Sbjct: 229 RTDFAGRGELAARQMHLARFLRLLLRLADEFG-CAVVITNQVVASVDGAASMFGGDQKK- 286
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P +F IN
Sbjct: 287 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPESEATFAIN 331
Query: 333 PSGIS 337
GI
Sbjct: 332 ADGIG 336
>gi|195037391|ref|XP_001990144.1| GH18396 [Drosophila grimshawi]
gi|193894340|gb|EDV93206.1| GH18396 [Drosophila grimshawi]
Length = 352
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 27/257 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GG+ G +TE+ G GKTQ C L++ LP G +G +YID
Sbjct: 112 LTTGSKELDKLLGGGIETGSITEIFGEFRCGKTQICHTLAVTCQLPISQNGGEGKALYID 171
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R+ S+ + + + ++ + + + + T+ ++ + ++
Sbjct: 172 TEGTFRPERL-----SAIAQRYSME--EADVLDNVACARAHNTDQQTKLVQMAAGMMFES 224
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ L+++DS AL + R A Q+ L + ++ LA+ + +V+TNQV Q
Sbjct: 225 RYALIIVDSAMALYRSEYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTAQVD 284
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKS 319
+ ++ +K + G AHA T RL L + K R + S
Sbjct: 285 GGASMFQADAKK----------------PIGGHIMAHASTTRLYLRKGKGDARICKIYDS 328
Query: 320 PTSPPLAFSFTINPSGI 336
P P F I P GI
Sbjct: 329 PCLPESEAMFAILPEGI 345
>gi|198420224|ref|XP_002126934.1| PREDICTED: similar to RAD51 homolog isoform 1 [Ciona intestinalis]
Length = 338
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 108/270 (40%), Gaps = 42/270 (15%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T K LD L GG+ G +TE+ G TGKTQ C ++ LP GG +G +YI
Sbjct: 100 QITTGSKELDKLLQGGIETGSITEIFGEFRTGKTQICHTIAATCQLPIEQGGGEGKCLYI 159
Query: 143 DVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK 195
D E TF R++ + GA + +++ + ++L+ +SE
Sbjct: 160 DTEGTFRPERLLAVAERYGLNGADVLDNVAYARAYNTDHQSQLLIQAAAMMSE------- 212
Query: 196 IKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
+ ++V+DS AL + R + Q L + + LA+ + +++T
Sbjct: 213 -------TRYAVIVVDSATALYRTDYSGRGELSARQMHLGRFLRTLLRLADEFGVAVIIT 265
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ- 311
NQV Q D ++ +K + G AHA T RL L G
Sbjct: 266 NQVVAQV-DGGAMFCADPKK----------------PIGGHIMAHASTTRLYLRKGRGDT 308
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
R + SP P F IN GI D
Sbjct: 309 RICKIYDSPCLPESEVMFCINSDGIGDTKD 338
>gi|169806553|ref|XP_001828021.1| DNA repair and recombination protein RAD51 [Enterocytozoon bieneusi
H348]
gi|161779161|gb|EDQ31186.1| DNA repair and recombination protein RAD51 [Enterocytozoon bieneusi
H348]
Length = 337
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 106/258 (41%), Gaps = 41/258 (15%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGK+Q C +++ LP GG +G +YID E TF +
Sbjct: 106 LDKLLNGGIESGTITEVFGEFRTGKSQLCHTVAVTCQLPKENGGGNGKCMYIDTEGTFRT 165
Query: 151 RRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
R+I + I +++ + +L+ +SE
Sbjct: 166 ERLIPIAERLGLDPNEVLDNISYARAFNSDHQNNLLIHASAMMSE--------------T 211
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ +L++DS +L + R + Q L+ + +T+LAE I +++TNQV
Sbjct: 212 KYAVLIVDSATSLYRTDYNGRGELSARQISLARFLRSLTNLAETYGIAVIITNQVVANVD 271
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKS 319
++ V+K + G AHA RL G+ R + S
Sbjct: 272 GAVAVFGGDVKK----------------PIGGHIIAHASNTRLYFRKGRGETRICKIYDS 315
Query: 320 PTSPPLAFSFTINPSGIS 337
P P SF+I GI+
Sbjct: 316 PLLPESEASFSITEGGIA 333
>gi|116754195|ref|YP_843313.1| DNA repair and recombination protein RadA [Methanosaeta thermophila
PT]
gi|116665646|gb|ABK14673.1| DNA repair and recombination protein RadA [Methanosaeta thermophila
PT]
Length = 322
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 126/286 (44%), Gaps = 42/286 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R L G + T + D L GG+ + EL G G+GKTQ +L+
Sbjct: 64 FETGDQVLERR----KLVGKITTGSRNFDELLGGGMETQAIVELYGEFGSGKTQVAHQLA 119
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIE--MGASSF------PEIF-HSKGMAQEM 174
+ LP GGL+G I ID E+TF R+ + MG + PE F + +A+
Sbjct: 120 VNVQLPPELGGLNGSAIIIDTENTFRPERISQMVMGLRAIDDREWRPEDFLKNIHVARAY 179
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L S E ESL + ++ V+LL++DS+ A + R A Q L
Sbjct: 180 NSNHQILLAESAMELAESLRET-----EHPVRLLIVDSVTAHFRAEYVGRGTLADRQQKL 234
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
+ H+ + A+ + I+VTNQV + K D D T+ V
Sbjct: 235 NKHLHDLMRFADLNNALILVTNQV--------------MAKPDTFFGDPTK------PVG 274
Query: 292 GFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G H T R+ L ++K +R + SP+ P F++ G+
Sbjct: 275 GHVLGHTATFRVYLRKSKGDKRIARLVDSPSMPDGEAVFSVTMEGL 320
>gi|407408409|gb|EKF31859.1| meiotic recombination protein DMC1, putative [Trypanosoma cruzi
marinkellei]
Length = 351
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 114/277 (41%), Gaps = 32/277 (11%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F + + QR + T LD L GG+ +TE G TGKTQ L
Sbjct: 98 FTNGVTYLHQRGKVTRM----TTGSTALDQLLGGGIESMSITEAFGEFRTGKTQIAHTLC 153
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ + LP GG +G VIY+D ESTF R+ + A + A + ILV +
Sbjct: 154 VTSQLPTSMGGGNGKVIYVDTESTFRPERIKPIAARFGLD-------ADAVLNNILVARA 206
Query: 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240
+ L + + ++Q LLV+DS+ AL R A Q L+ +S +
Sbjct: 207 YTHEHQMHLLSMVAAKMAEDQFGLLVVDSITALFRVDFSGRGELAERQQKLAKMMSHLIK 266
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
LAE + + +TNQV S ++ +K V G AHA T
Sbjct: 267 LAEEFNVAVYITNQVVADPGGAS-MFVADPKK----------------PVGGHILAHAST 309
Query: 301 IRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
RL L G QR + SP+ P + F+I+ GI
Sbjct: 310 TRLSLRKGRGDQRVCKIYDSPSLPEVECVFSISEQGI 346
>gi|384490394|gb|EIE81616.1| DNA repair protein RAD51 [Rhizopus delemar RA 99-880]
Length = 334
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 112/265 (42%), Gaps = 41/265 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GGV G +TE+ G TGK+QFC +++ A LP GG G ++ID
Sbjct: 96 ITTGSKALDGLLGGGVETGSITEIFGEFRTGKSQFCHTMAVTAQLPLEMGGAQGKCLFID 155
Query: 144 VESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI 196
E++F R++ + G + I +++ + +LV ++E
Sbjct: 156 TENSFRPNRILSIAQRYSLNGPDTLDNIAYARAYNTDQQTSLLVQAAAMMAE-------- 207
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTN 253
+ LL++DS AL + R A Q+ L+ + + LA+ + +++TN
Sbjct: 208 ------TRFALLIVDSAIALYRTDYVGRGELAARQNHLAQFLRRLQRLADEFGVAVIITN 261
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-R 312
QV Q + ++ +K G AHA RL + G+ R
Sbjct: 262 QVVAQVDNSVSMFNPDPKK----------------PAGGNIIAHASCTRLYFKKGRGETR 305
Query: 313 FMNVEKSPTSPPLAFSFTINPSGIS 337
V SP+ P F I+ GI+
Sbjct: 306 ICKVYDSPSLPETDCVFAIHEEGIA 330
>gi|242019042|ref|XP_002429975.1| DNA repair protein rad51, putative [Pediculus humanus corporis]
gi|212515030|gb|EEB17237.1| DNA repair protein rad51, putative [Pediculus humanus corporis]
Length = 339
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 111/257 (43%), Gaps = 28/257 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GG+ G +TE+ G TGKTQ C L++ LP G +G +YID
Sbjct: 102 LTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQNGGEGKCLYID 161
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R+I + E F K ++ + V + + T+ L + ++
Sbjct: 162 TEGTFRPERLI-----AVAERF--KLSLSDVLDNVAVARAYNTDHQTQLLLMASAMMSES 214
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ LL+IDS AL + R + Q L+ + + LA+ + +++TNQV Q
Sbjct: 215 RYALLIIDSATALYRTDYSGRGELSARQMHLARFLRMCLRLADEFGVAVILTNQVVAQV- 273
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKS 319
D + ++ +K V G AH+ T RL L G+ R + S
Sbjct: 274 DCATMFAADPKK----------------PVGGNIMAHSSTTRLYLRKGRGETRICKIYDS 317
Query: 320 PTSPPLAFSFTINPSGI 336
P P F IN GI
Sbjct: 318 PCLPESEAMFAINSDGI 334
>gi|357156164|ref|XP_003577363.1| PREDICTED: DNA repair protein RAD51 homolog B-like [Brachypodium
distachyon]
Length = 340
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 134/317 (42%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + T + LD L
Sbjct: 60 DLLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQV----TTGSRELDKILE 115
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 116 GGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 175
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L++
Sbjct: 176 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MIETRFALMI 221
Query: 210 IDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H + SL EF + +V+TNQV Q D S +
Sbjct: 222 VDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFG-VAVVITNQVVAQV-DGSAM 279
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPP 324
+ I + G AHA T RL L G +R V SP
Sbjct: 280 FA----------------GPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAE 323
Query: 325 LAFSFTINPSGISLLTD 341
F ++ G++ + D
Sbjct: 324 AEARFQLSSEGVADVKD 340
>gi|406603267|emb|CCH45195.1| DNA repair protein [Wickerhamomyces ciferrii]
Length = 352
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 131/305 (42%), Gaps = 38/305 (12%)
Query: 46 LSEVRSA--LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGV 103
+SE +S LA S++V F TA +R+ L T K LD L GG+ G
Sbjct: 76 ISEAKSDKLLAEASKLVPMGFTTASEFHHRRSELICL----TTGSKQLDTLLGGGIETGS 131
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163
+TEL G TGK+Q C L++ LP GG +G +YID E TF R++
Sbjct: 132 ITELFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPVRLV--------S 183
Query: 164 IFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV----P 218
I G+ ++ A + + + + L + + +++ LL++DS+ AL
Sbjct: 184 IARRYGLNEDDALDNVAYARAYNADHQLQLLNQAAAMMSESRFSLLIVDSIMALYRTDFA 243
Query: 219 GVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILK 278
G E A H ++ ++ + LA+ I +V+TNQV Q D ++ +K
Sbjct: 244 GRGELSARQMH-VAKYMRTLQRLADEFGIAVVITNQVVAQV-DGGMMFNPDPKK------ 295
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AH+ T RL L+ G QR + SP P F I GI
Sbjct: 296 ----------PIGGNIIAHSSTTRLSLKKGKGEQRICKIYDSPCLPESETVFAIYEDGIG 345
Query: 338 LLTDD 342
DD
Sbjct: 346 DPKDD 350
>gi|8307944|gb|AAF74403.1|AF198107_3 DNA repair protein RAD51 [Giardia intestinalis]
Length = 236
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 111/251 (44%), Gaps = 30/251 (11%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
+A L GGV +TE+ G TGKTQ C L++ A LP GG G +YID E TF
Sbjct: 6 FNALLGGGVETMSITEVFGEFRTGKTQLCHTLAVTAQLPVSKGGGGGKTVYIDTEGTFRP 65
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
++ + E F G+ + A I+V + + + E + + +++NQ L++
Sbjct: 66 EKV-----APIAERF---GLNPKKALDNIMVARVYTHEQQIECITALPKLMVENQFSLVI 117
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS+ AL R A Q L H+S + LA+ + + VTNQV Q D + ++
Sbjct: 118 VDSLTALFRVDFTGRGELADRQQKLGQHLSGLAKLADEFNLAVFVTNQVMAQV-DGAAMF 176
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G R + SP+
Sbjct: 177 TADPKK----------------PIGGHILAHASTTRLYLRKGRGDTRVAKIYDSPSLAEG 220
Query: 326 AFSFTINPSGI 336
S++I GI
Sbjct: 221 EASYSIAAEGI 231
>gi|452821241|gb|EME28274.1| DNA repair protein [Galdieria sulphuraria]
Length = 365
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 114/263 (43%), Gaps = 30/263 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T + LD L GG+ G +TEL G TGKTQ C L + LP GG +G +YID
Sbjct: 128 LTTGSQELDNLLAGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIENGGGEGKALYID 187
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ I G+ ++++ I V + + + L + + +
Sbjct: 188 SEGTFRPERIV--------AISERYGLNSEDVLNNIAVARAYNSDHQLQLLTQACALMAE 239
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ L+++DS AL + R A Q ++ + + LA+ + +V+TNQV Q
Sbjct: 240 SRYALIIVDSATALYRTDYSGRGELAARQQHMARFLRALQKLADEFGVAVVITNQVVAQV 299
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEK 318
D ++ +K + G AHA RL L + ++ R +
Sbjct: 300 -DGGAMFAVDPKK----------------PIGGNIIAHASQTRLYLRKGRAENRICKIYD 342
Query: 319 SPTSPPLAFSFTINPSGISLLTD 341
SP P +F+I GI +D
Sbjct: 343 SPCLPEAEATFSIMADGIRDASD 365
>gi|194746120|ref|XP_001955532.1| GF16205 [Drosophila ananassae]
gi|190628569|gb|EDV44093.1| GF16205 [Drosophila ananassae]
Length = 334
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 31/308 (10%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T +LM + + +V +A+ + +V F +A E RA L T K LD
Sbjct: 49 TRKQLMAIPGLGGGKVEHIIAMATRLVPLGFLSAKTYYEMRADVVQL----TTGSKELDK 104
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+ G +TE+ G GKTQ C L++ LP G +G +YID E+TF R+
Sbjct: 105 LLGGGIETGSITEIFGEFRCGKTQICHTLAVTCQLPISQKGGEGKCLYIDTENTFRPERL 164
Query: 154 IEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM 213
S+ + + K E+ + + + + T+ ++ L +++ ++++DS
Sbjct: 165 -----SAIAQRY--KLNEAEVLDNVACSRAYNSDQQTKLIQMAAGMLFESRYAVVIVDSA 217
Query: 214 EALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQV 270
AL + R A Q+ L + ++ LA+ + +V+TNQV ++
Sbjct: 218 MALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASVDAGPGMFAGDS 277
Query: 271 QKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSF 329
+K + G AHA T RL L G+ R + SP P F
Sbjct: 278 KK----------------PIGGHIMAHASTTRLYLRKGKGETRICKIYDSPCLPESEAMF 321
Query: 330 TINPSGIS 337
I P GI
Sbjct: 322 AILPDGIG 329
>gi|294460653|gb|ADE75901.1| unknown [Picea sitchensis]
Length = 346
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 112/271 (41%), Gaps = 35/271 (12%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T + LD L GG+ VTE+ G G GKTQ ++L++ +P GGL G IYI
Sbjct: 88 RIVTFCEDLDVILGGGICRKEVTEVGGVPGIGKTQLGIQLAINVQIPVDLGGLGGQAIYI 147
Query: 143 DVESTFTSRRMIEMGASSFPEI-------------FHSKGMAQEMAGRILVLQPTSLSEF 189
D E +F R+ ++ + ++ H+K + I + + +E
Sbjct: 148 DTEGSFMVERVCQIAKACIEKLKDIPCTSERKVEECHTKLKVDDFLSNIFYFRACNYTEQ 207
Query: 190 TESLEKI-KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ + K +++VK++++DS+ E A L + LAE
Sbjct: 208 IAVINYMDKFIEERDKVKIIIVDSVTFHFRQDFEDLALRTRLLGGMSQKLMRLAEEYDTA 267
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + S FQ + LG W+HA T R+VL
Sbjct: 268 VVLMNQVTTKFSGGS----FQ-----------------LALALGESWSHACTNRVVLYWN 306
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGISLL 339
RF ++KSP+ + F+I GI L
Sbjct: 307 GDNRFGYIDKSPSLQSASAPFSITTGGICNL 337
>gi|14520336|ref|NP_125811.1| DNA repair and recombination protein RadB [Pyrococcus abyssi GE5]
gi|5457551|emb|CAB49042.1| radB DNA repair and recombination protein [Pyrococcus abyssi GE5]
Length = 239
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 29/217 (13%)
Query: 78 EHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDG 137
E G L T +KGLD L GGV GV+ ++ GP TGKT F +++ LL +G
Sbjct: 7 EAKGMTLTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLN---------EG 57
Query: 138 GVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKI 196
V Y+D E F+ R+ +M S+G+ E A + ++ +P L+E + K+
Sbjct: 58 KVAYVDTEGGFSPERLKQMA--------ESRGLDPEKALSKFIIFEPMDLNEQRRIISKL 109
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP---LSWHISLITSLAEFSRIPIVVTN 253
K +++ ++ L+V+DS+ A RA G L+ + ++ LA + ++V N
Sbjct: 110 K-TVVSDKFSLVVVDSLTA------HYRAEGSRDHVELAKQLQVLQWLARKKNVAVIVVN 162
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
QV S + + L P + KD R+ V V
Sbjct: 163 QVYYDS-NTNTLRPIAEHTLGYRTKDILRFEKFRVGV 198
>gi|374723842|gb|EHR75922.1| DNA repair and recombination protein RadA [uncultured marine group
II euryarchaeote]
Length = 345
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 115/259 (44%), Gaps = 35/259 (13%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L ++++ +D L GG + E+ G G+GKTQ +L++ LP GG DG V YID
Sbjct: 114 LSSKVQSIDDLLGGGFETQALVEVYGAFGSGKTQIGHQLAVNCTLPMSEGGFDGDVFYID 173
Query: 144 VESTFTSRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
E TF R+ +M G P+ RI V + + + +++IK
Sbjct: 174 TEDTFRPERITQMARGHGLDPDAVLE---------RIHVARAYNSAHQMLLVDEIKRMSK 224
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
VK++++DS+ + + R A Q L+ H+ + LA+ + ++VTNQV
Sbjct: 225 GLNVKMIIVDSLTSHFRAEYIGRGMLANRQQKLNRHLKDLKQLADVNNALVLVTNQVH-- 282
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVE 317
K D + D T+ + G AHA T RL L +AK+G+R +
Sbjct: 283 ------------SKPDAMWGDPTK------PIGGHVLAHASTFRLYLRKAKAGRRIARLV 324
Query: 318 KSPTSPPLAFSFTINPSGI 336
SP P + + G+
Sbjct: 325 DSPNLPDGECVYQVTQEGL 343
>gi|347828562|emb|CCD44259.1| similar to meiotic recombination protein dmc1 [Botryotinia
fuckeliana]
Length = 377
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 123/284 (43%), Gaps = 40/284 (14%)
Query: 76 ATEHLGGH-------LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
A EH GH + T K LDA L GG ++E+ G GKTQ L+++A L
Sbjct: 107 AAEH--GHFRKKCIRISTGSKQLDACLNGGFQTMSISEVYGEFRCGKTQLAHTLAVIAQL 164
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVL 181
P GG +G V YID E TF R+ E+ + I +++ E+ +L++
Sbjct: 165 PKEMGGAEGKVAYIDTEGTFRPERISEIAERFGVDPDQALENIVYARAHNTEVYLVVLLI 224
Query: 182 QPTSLSEFTESLEKIKVSLLQN----QVKLLVIDSMEALVPGVHEQR---APGQHPLSWH 234
Q S ++ + +++ L QN + +LL+IDS+ AL R + Q L+
Sbjct: 225 QIISFTDHNQMQQELLEGLAQNFATDEYRLLIIDSIMALYRSDFIGRGELSERQGALNAF 284
Query: 235 ISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
+ T +AE + + +TNQV S L+ R HI+
Sbjct: 285 LRKATQMAEEFNLVVFMTNQVMSDP-GASALFAGA--------DGRKPAGGHIL------ 329
Query: 295 WAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
AHA T R++L G +R V SP P ++ I GI+
Sbjct: 330 -AHASTTRVLLRKGRGEERVAKVVDSPDCPEREATYIITTGGIN 372
>gi|115486271|ref|NP_001068279.1| Os11g0615800 [Oryza sativa Japonica Group]
gi|18874069|dbj|BAB85490.1| Rad51 [Oryza sativa Japonica Group]
gi|77551901|gb|ABA94698.1| DNA repair protein RAD51, putative, expressed [Oryza sativa
Japonica Group]
gi|113645501|dbj|BAF28642.1| Os11g0615800 [Oryza sativa Japonica Group]
gi|218193367|gb|EEC75794.1| hypothetical protein OsI_12723 [Oryza sativa Indica Group]
gi|222616333|gb|EEE52465.1| hypothetical protein OsJ_34631 [Oryza sativa Japonica Group]
Length = 339
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 133/317 (41%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + T + LD L
Sbjct: 59 DLLQIKGISEAKVDKIVEAASKLVPLGFTSASQLHAQRLEIIQV----TTGSRELDKILD 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 115 GGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L++
Sbjct: 175 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MIETRFALMI 220
Query: 210 IDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H + SL EF + +V+TNQV Q D S +
Sbjct: 221 VDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFG-VAVVITNQVVAQV-DGSAM 278
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPP 324
+ I + G AHA T RL L G +R V SP
Sbjct: 279 FA----------------GPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAE 322
Query: 325 LAFSFTINPSGISLLTD 341
F I G++ + D
Sbjct: 323 AEARFQIASEGVADVKD 339
>gi|18874071|dbj|BAB85491.1| Rad51 [Oryza sativa Japonica Group]
gi|218186098|gb|EEC68525.1| hypothetical protein OsI_36814 [Oryza sativa Indica Group]
Length = 339
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 133/317 (41%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + T + LD L
Sbjct: 59 DLLQIKGISEAKVDKIVEAASKLVPLGFTSASQLHAQRLEIIQV----TTGSRELDKILD 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 115 GGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L++
Sbjct: 175 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MIETRFALMI 220
Query: 210 IDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H + SL EF + +V+TNQV Q D S +
Sbjct: 221 VDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFG-VAVVITNQVVAQV-DGSAM 278
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPP 324
+ I + G AHA T RL L G +R V SP
Sbjct: 279 FA----------------GPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAE 322
Query: 325 LAFSFTINPSGISLLTD 341
F I G++ + D
Sbjct: 323 AEARFQIASEGVADVKD 339
>gi|410671201|ref|YP_006923572.1| DNA repair and recombination protein RadA [Methanolobus
psychrophilus R15]
gi|409170329|gb|AFV24204.1| DNA repair and recombination protein RadA [Methanolobus
psychrophilus R15]
Length = 325
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 126/283 (44%), Gaps = 36/283 (12%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++ME+R +H+G L T + + GG+ +TE+ G G+GKTQ +L+
Sbjct: 66 FETGDVVMERR---KHVG-KLSTGCVEFNEMMGGGIETQSITEMYGEFGSGKTQVAHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGLDG VI ID E+TF R+ +M E + + +E I V +
Sbjct: 122 VNVQLPRELGGLDGSVIIIDTENTFRPERIQQM-VEGLSEKYGQEYDHEEFLKNIHVARA 180
Query: 184 TSLSE---FTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHI 235
+ + +S ++ L + V+LL++DS+ A + R A Q L+ H+
Sbjct: 181 FNSNHQILLVDSAMELANELKNTEKPVRLLIVDSLTAHFRAEYIGRGTLADRQQKLNKHL 240
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAVLGFH 294
+ + +VVTNQV + K D D T+ HIV
Sbjct: 241 HGLQRFGDLLNACVVVTNQV--------------MSKPDAFFGDPTKPIGGHIV------ 280
Query: 295 WAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
H T RL L ++K +R + + SP P ++ +G+
Sbjct: 281 -GHTATFRLYLRKSKGDKRIVRLVDSPNLPDAESIISVTTAGL 322
>gi|82617156|emb|CAI64063.1| DNA repair and recombination protein [uncultured archaeon]
gi|82617268|emb|CAI64174.1| DNA repair and recombination protein [uncultured archaeon]
gi|268323001|emb|CBH36589.1| DNA repair and recombination protein radA [uncultured archaeon]
Length = 315
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 113/267 (42%), Gaps = 42/267 (15%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G L T D L GG+ +TE G G+GKTQ +L++ LP GGL+G VI
Sbjct: 77 GKLTTGSTSFDDLLGGGLETQALTEFYGEFGSGKTQIAHQLAVNVQLPPENGGLNGSVII 136
Query: 142 IDVESTFTSRRMIEM--GASSFP-EIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKV 198
ID E+TF R+ +M GAS P EI + +A+ +L + E++
Sbjct: 137 IDTENTFRPERIKDMAEGASLDPDEILKNIHVARAYNSNHQIL-------LVDKAERLAE 189
Query: 199 SLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTN 253
L+ + V+LL++DS A + R A Q ++ H+ + + +++TN
Sbjct: 190 ELIDTEKPVRLLIVDSATAHFRSEYVGRGTLADRQQKINKHLHDTLRFGDLNNAVVMITN 249
Query: 254 --QVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAVLGFHWAHAVTIRLVLEAKSG 310
QVRP D D TR H+V H T RL L G
Sbjct: 250 QVQVRP----------------DAFFGDPTRPIGGHVV-------GHTATFRLYLRKSKG 286
Query: 311 Q-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ R + SP P FT++ GI
Sbjct: 287 EKRIARLVDSPNLPEAEAVFTVSKVGI 313
>gi|387912861|sp|Q9V2F6.2|RADB_PYRAB RecName: Full=DNA repair and recombination protein RadB
gi|380740860|tpe|CCE69494.1| TPA: DNA repair and recombination protein RadB [Pyrococcus abyssi
GE5]
Length = 229
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 29/211 (13%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T +KGLD L GGV GV+ ++ GP TGKT F +++ LL +G V Y+D
Sbjct: 3 LTTGVKGLDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLN---------EGKVAYVD 53
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQ 202
E F+ R+ +M S+G+ E A + ++ +P L+E + K+K +++
Sbjct: 54 TEGGFSPERLKQMA--------ESRGLDPEKALSKFIIFEPMDLNEQRRIISKLK-TVVS 104
Query: 203 NQVKLLVIDSMEALVPGVHEQRAPGQHP---LSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ L+V+DS+ A RA G L+ + ++ LA + ++V NQV S
Sbjct: 105 DKFSLVVVDSLTA------HYRAEGSRDHVELAKQLQVLQWLARKKNVAVIVVNQVYYDS 158
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
+ + L P + KD R+ V V
Sbjct: 159 -NTNTLRPIAEHTLGYRTKDILRFEKFRVGV 188
>gi|330508608|ref|YP_004385036.1| DNA repair and recombination protein RadA [Methanosaeta concilii
GP6]
gi|328929416|gb|AEB69218.1| DNA repair and recombination protein RadA [Methanosaeta concilii
GP6]
Length = 325
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 119/292 (40%), Gaps = 53/292 (18%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G + T K D L GG+ + EL G G GKTQ +L+
Sbjct: 66 FETGDRILERRKQV----GKVTTSCKSFDELLGGGMETQAIVELYGEFGCGKTQVAHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL---- 179
+ LP GGL+G VI ID E+TF R+ +M KG+ GRI
Sbjct: 122 VNIQLPVEMGGLNGSVIIIDTENTFRPERIDQM----------VKGLPPAPDGRIWETED 171
Query: 180 VLQPTSLSEFTESLEKI-----------KVSLLQNQVKLLVIDSMEALVPGVHEQR---A 225
L+ +++ S +I KV + V+LL++DS+ A + R A
Sbjct: 172 FLKNINVARAFNSNHQILLAESAMDLAEKVKDSERPVRLLIVDSVTAHFRAEYVGRGTLA 231
Query: 226 PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYS 285
Q L+ H+ + + + I+VTNQV + K D D T+
Sbjct: 232 DRQQKLNKHLHDLMRFGDLNNALILVTNQV--------------MSKPDTFFGDPTK--- 274
Query: 286 HIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
V G H T RL L G+ R + SP P F++ G+
Sbjct: 275 ---PVGGHVLGHTSTFRLYLRKSKGEKRIARLVDSPNLPDGEAVFSVTTDGL 323
>gi|213403772|ref|XP_002172658.1| DNA repair protein RAD51 [Schizosaccharomyces japonicus yFS275]
gi|212000705|gb|EEB06365.1| DNA repair protein RAD51 [Schizosaccharomyces japonicus yFS275]
Length = 370
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 110/258 (42%), Gaps = 31/258 (12%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GGV G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 128 ITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLYID 187
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + E + G +E+ + + + E L++ + ++
Sbjct: 188 TEGTFRPVRLL-----AVAERYGLNG--EEVLDNVAYARAYNADHQLELLQQAANMMAES 240
Query: 204 QVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LLV+DS AL G E A H L+ + + LA+ I +V+TNQV Q
Sbjct: 241 RFSLLVVDSCTALYRTDFSGRGELSARQMH-LARFMRTLQRLADEFGIAVVITNQVVAQV 299
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
D P + + G AH+ T RL L G QR V
Sbjct: 300 -DGISFNPDPKKPIG-----------------GNILAHSSTTRLSLRKGRGEQRICKVYD 341
Query: 319 SPTSPPLAFSFTINPSGI 336
SP P F IN GI
Sbjct: 342 SPCLPESEAIFAINSDGI 359
>gi|399949905|gb|AFP65561.1| DNA repair protein Rad51 [Chroomonas mesostigmatica CCMP1168]
Length = 331
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 108/258 (41%), Gaps = 28/258 (10%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
HL T + LD L GG+ G +TEL G TGKTQ C +S+ L GG +G +YI
Sbjct: 93 HLTTGSRNLDKILGGGIETGSITELFGEFRTGKTQLCHNISVSCQLSFEQGGGEGRALYI 152
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E TF R++ S E F G Q++ I + + E L + + +
Sbjct: 153 DTEGTFRPERIV-----SIAERFKLNG--QDVLDNIAFARAYNTDHQMELLNQACAMMAE 205
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ ++++DS AL + R AP Q L+ + ++ L + + ++TNQV
Sbjct: 206 RRYAVVIVDSATALYRTDYIGRGELAPRQQHLAKFLRILQRLCDEFGVAALITNQVIA-- 263
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
V + + D + + G AHA RL G R +
Sbjct: 264 ---------SVDGSNSFITDPKK------PMGGNVLAHASQTRLSFRKGKGVNRICRIHD 308
Query: 319 SPTSPPLAFSFTINPSGI 336
SP+ P +F+I GI
Sbjct: 309 SPSLPNSECTFSITGVGI 326
>gi|346975010|gb|EGY18462.1| DNA repair protein RAD51 [Verticillium dahliae VdLs.17]
Length = 354
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 137/301 (45%), Gaps = 38/301 (12%)
Query: 46 LSEVRSA--LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGV 103
+SE ++A LA S++V F TA + ++R +E + + T K LD L GG+ G
Sbjct: 73 ISEQKAAKILAEASKLVPMGFTTATEMHQRR--SELI--SISTGSKQLDTLLAGGIETGS 128
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163
+TEL G TGK+Q C L++ LP GG +G +YID E TF R++ + A+ F
Sbjct: 129 ITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAV-ANRF-- 185
Query: 164 IFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP---- 218
G++ +E+ + + + + L++ + + + LL++DS AL
Sbjct: 186 -----GLSGEEVLDNVAYARAYNSDHQLQLLQQASAMMCETRFSLLIVDSATALYRTDFV 240
Query: 219 GVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRIL 277
G E + H L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 241 GRGELSSRQTH-LAKFLRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK----- 294
Query: 278 KDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AHA T R+ L+ G+ R + SP P F IN GI
Sbjct: 295 -----------PIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDCLFAINEDGI 343
Query: 337 S 337
Sbjct: 344 G 344
>gi|357135308|ref|XP_003569252.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Brachypodium
distachyon]
Length = 309
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 117/268 (43%), Gaps = 35/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T L++ L GG+ VTE+ G G GKTQ ++L++ +P YGGL G +YI
Sbjct: 49 HITTGSGDLNSILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVEYGGLGGKAVYI 108
Query: 143 DVESTFTSRRMIEMGASSFPEIF------HSKGMA-------QEMAGRILVLQPTSLSEF 189
D E +F R+ ++ +I H K + + I + S +E
Sbjct: 109 DTEGSFMVERVYQIAEGCISDIMEYFPYRHDKASSGREHLQPERFLADIYYFRVCSYTEQ 168
Query: 190 TESLEKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ ++ L +++ V++++IDS+ + A LS + L++ +
Sbjct: 169 IAVINYLEKFLGEHKDVRIIIIDSVTFHFRQDFDDLALRTRVLSGLSLKLMKLSKTYNVA 228
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + + S FQ + LG W+H+ T RL+L
Sbjct: 229 VVLLNQVTTKFTEGS----FQ-----------------LTLALGDSWSHSCTNRLILYWN 267
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R ++KSP+ P + +T+ G+
Sbjct: 268 GNERCAYLDKSPSLPVASTPYTVTNKGV 295
>gi|209946406|gb|ACI97434.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 106/258 (41%), Gaps = 39/258 (15%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKTQ L+LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVXNHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
+IDS+ A+ ++ +H +L+ S A+ +V NQV
Sbjct: 211 IIDSVAAIFRLYNDYLERARHMRRLADALL-SYADKYNCAVVCVNQV------------- 256
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-----EAKSGQRFMNVEK----- 318
TR + LG WAH RL + + + G + + V K
Sbjct: 257 -----------ATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILY 305
Query: 319 SPTSPPLAFSFTINPSGI 336
SP +P F I G+
Sbjct: 306 SPETPNDFAEFLITTDGV 323
>gi|269986696|gb|EEZ92976.1| DNA repair and recombination protein RadA [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 345
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 131/306 (42%), Gaps = 52/306 (16%)
Query: 50 RSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVG 109
R +A E F + L ++R + + + T + L+ L GGV +TE G
Sbjct: 76 RKIVAEAREASKMNFMSGLEFEDKRKSVQRI----STSSEALNILLGGGVETQSITECYG 131
Query: 110 PAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKG 169
G+GK+Q +L++ LP GGL+G I+ID E TF R+ ++ A KG
Sbjct: 132 EYGSGKSQLAFQLAVDVQLPLEKGGLEGHAIWIDTEGTFRPSRIEQLAA--------VKG 183
Query: 170 MAQEMAGRILVLQPTSLSEFTESLEKI----KVSLLQN---QVKLLVIDSMEALVPGVHE 222
+ + A LQ + S ++ KV L N ++KL+V+DSM AL +
Sbjct: 184 LDPKQA-----LQNIKIGRAYSSDHQVLLVDKVPELINADPKIKLIVVDSMMALFRAEYV 238
Query: 223 QRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRIL 277
R Q ++ + + LA+ + + +TNQV RP D +
Sbjct: 239 GRGTLVDRQQKVNVVLHNLQRLADRFNVAVYITNQVMARP----------------DVMF 282
Query: 278 KDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
D T AV G H T R+ L + K G R + SP+ P SF I +GI
Sbjct: 283 GDPT------AAVGGHIIGHVATYRIYLRKGKKGSRVGKLVDSPSLPEGEASFEITSNGI 336
Query: 337 SLLTDD 342
+ L ++
Sbjct: 337 TDLEEE 342
>gi|302413964|ref|XP_003004814.1| DNA repair protein RAD51 [Verticillium albo-atrum VaMs.102]
gi|261355883|gb|EEY18311.1| DNA repair protein RAD51 [Verticillium albo-atrum VaMs.102]
Length = 355
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 137/301 (45%), Gaps = 38/301 (12%)
Query: 46 LSEVRSA--LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGV 103
+SE ++A LA S++V F TA + ++R +E + + T K LD L GG+ G
Sbjct: 73 ISEQKAAKILAEASKLVPMGFTTATEMHQRR--SELI--SISTGSKQLDTLLAGGIETGS 128
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163
+TEL G TGK+Q C L++ LP GG +G +YID E TF R++ + A+ F
Sbjct: 129 ITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAV-ANRF-- 185
Query: 164 IFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP---- 218
G++ +E+ + + + + L++ + + + LL++DS AL
Sbjct: 186 -----GLSGEEVLDNVAYARAYNSDHQLQLLQQASAMMCETRFSLLIVDSATALYRTDFV 240
Query: 219 GVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRIL 277
G E + H L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 241 GRGELSSRQTH-LAKFLRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK----- 294
Query: 278 KDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AHA T R+ L+ G+ R + SP P F IN GI
Sbjct: 295 -----------PIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDCLFAINEDGI 343
Query: 337 S 337
Sbjct: 344 G 344
>gi|167042704|gb|ABZ07424.1| putative recA bacterial DNA recombination protein [uncultured
marine crenarchaeote HF4000_ANIW133O4]
Length = 367
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 102/237 (43%), Gaps = 32/237 (13%)
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163
+TE+ G G+GKTQFC + + P GGL+G V+YID E+TF R++ +
Sbjct: 107 LTEVYGEFGSGKTQFCHTMCVTVQKPKEEGGLEGTVLYIDTENTFRPERIVSIAK----- 161
Query: 164 IFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHE 222
H GM E RI+V + + + T LE+ + +N VKLL++DS L +
Sbjct: 162 -IH--GMDPEKVLDRIIVARAYNSAHQTLILEEASQMIKENNVKLLIVDSAVGLFRAEYL 218
Query: 223 QR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKD 279
R A Q L+ + L+ +AE + TNQV + D D
Sbjct: 219 GRGTLAIRQQRLNKFVHLLVRIAEVYNCAALATNQV--------------MASPDVFFGD 264
Query: 280 RTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
TR + G AH T R+ + +R + SP P F + +G+
Sbjct: 265 PTR------PIGGNVVAHTSTYRIYFKKSGKKRIARMVDSPHHPEQEVIFALGEAGV 315
>gi|19115078|ref|NP_594166.1| RecA family ATPase Dmc1 [Schizosaccharomyces pombe 972h-]
gi|12644064|sp|O42634.2|DMC1_SCHPO RecName: Full=Meiotic recombination protein dmc1
gi|2887332|emb|CAA17024.1| RecA family ATPase Dmc1 [Schizosaccharomyces pombe]
gi|3176384|dbj|BAA28671.1| dmc1 [Schizosaccharomyces pombe]
Length = 332
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 122/284 (42%), Gaps = 34/284 (11%)
Query: 60 VCPP-FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF 118
+CP F TA+ + + R + T + L+ L GG+ +TE+ G GKTQ
Sbjct: 74 MCPANFSTAMEISQNRKKV----WSISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQM 129
Query: 119 CLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI 178
L + A LP GG +G V +ID E TF R+ + E F A + I
Sbjct: 130 SHTLCVTAQLPRDMGGAEGKVAFIDTEGTFRPDRI-----KAIAERFGVD--ADQAMENI 182
Query: 179 LVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQR---APGQHPLSWH 234
+V + + + E + K+ ++ Q +LL++DS+ AL + R + Q L+
Sbjct: 183 IVSRAYNSEQQMEYITKLGTIFAEDGQYRLLIVDSIMALFRVDYSGRGELSERQQKLNIM 242
Query: 235 ISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
++ + ++E + + VTNQV+ D F DR H++
Sbjct: 243 LARLNHISEEFNVAVFVTNQVQA---DPGAAMMFASN-------DRKPVGGHVM------ 286
Query: 295 WAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
AHA RL+L G +R + SP P S+ I P GI+
Sbjct: 287 -AHASATRLLLRKGRGEERVAKLNDSPDMPEAECSYVITPGGIA 329
>gi|300708611|ref|XP_002996481.1| hypothetical protein NCER_100414 [Nosema ceranae BRL01]
gi|239605787|gb|EEQ82810.1| hypothetical protein NCER_100414 [Nosema ceranae BRL01]
Length = 332
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 111/264 (42%), Gaps = 39/264 (14%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+L T LD L GG G +TE+ G TGKTQ C +++ LP GG G +YI
Sbjct: 93 YLTTGSSELDKLLNGGFESGSITEVFGEFRTGKTQLCHTVAVTCQLPPEQGGASGKAMYI 152
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK----IKV 198
D E TF S R+ FP I G+ E VL+ S + S + ++
Sbjct: 153 DTEGTFRSERI-------FP-IAERYGLNPED-----VLENISYARAYNSDHQSQLLVQA 199
Query: 199 SLLQNQVK--LLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTN 253
S L + K +L+IDS AL R Q L+ ++ + +LAE ++ +++TN
Sbjct: 200 SALMSTSKYSVLIIDSATALYRTDFSGRGELGARQISLARYLRDLVNLAETYQVAVIITN 259
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-R 312
QV ++ V+K + G AHA T RL L G R
Sbjct: 260 QVVSNPDGAMSMFAGDVKK----------------PIGGNIMAHASTTRLSLRKGRGSTR 303
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
+ SP P F+I +GI
Sbjct: 304 ICKIYDSPLLPESEAMFSITEAGI 327
>gi|109084988|ref|XP_001083970.1| PREDICTED: DNA repair protein XRCC3 isoform 2 [Macaca mulatta]
Length = 346
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 148/346 (42%), Gaps = 39/346 (11%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 10 PRIIAAIKKAK-LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALHL 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+Q+ L LD+ L GG+P +TEL G + GKTQ L+L L P
Sbjct: 69 HQQKERFPAQHQRLSLGCPVLDSLLRGGLPLDGITELAGRSSVGKTQLALQLCLAVQFPR 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILVLQPT 184
+GGL+ G IYI E F +R+ ++ A + P K +I +
Sbjct: 129 QHGGLEAGAIYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQK---LRFGSQIFIEHVA 185
Query: 185 SLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITSLA 242
+ E + +K+ V L + +L+VIDS+ A P E + P + + SL +L
Sbjct: 186 DVDALLECVNKKVPVLLSRGMARLVVIDSVAA--PFRCEFDSQASAPRARRLQSLGAALR 243
Query: 243 EFS---RIPIVVTNQVRPQSHDESCLY-PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
E S + P++ NQV ++ + P + + LG WA+
Sbjct: 244 ELSSAFQSPVLCINQVTEAMEEQGAAHGPLGF------------WDERVSPALGITWANQ 291
Query: 299 VTIRLVLEAKSGQ--------RFMNVEKSPTSPPLAFSFTINPSGI 336
+ +RL+ E + R + V +P PP + S+TI+ G+
Sbjct: 292 LLVRLLAERLREEEAALGCPARTLRVLFAPHLPPSSCSYTISAEGV 337
>gi|328724498|ref|XP_001942729.2| PREDICTED: DNA repair protein XRCC3-like [Acyrthosiphon pisum]
Length = 330
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 112/265 (42%), Gaps = 35/265 (13%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K +D L GG+ +TE+ G +G GKTQFCL+++L LP G G YI
Sbjct: 88 LTTGCKQIDKLLGGGLFKYGITEISGESGCGKTQFCLQIALTVQLPLSLKGAKSGAAYIC 147
Query: 144 VESTFTSRRMIEMGAS-SFPEIFHSKGMAQEM-----AGRILVLQPTSLSEFTESL-EKI 196
E F S R+ +M ++ F SK E+ IL+ ++ + + + E +
Sbjct: 148 TEDRFPSSRIQQMISNIRFKYQCDSKIDMNELCQTDYGDNILISHIATVEDLKKCIHEML 207
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHISLITSLAEFSRIPIVV 251
LL +KL+VIDS+ A+ G + P + P L + L+ + I+
Sbjct: 208 PRVLLHRPIKLIVIDSITAVFRG---EYTPSEVPRRSRDLRDIAVFLHKLSVEHGLWIIC 264
Query: 252 TNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ 311
NQV D + +V LG WA+ VT RL++
Sbjct: 265 VNQVTSSISDIG--------------------GNKLVPSLGLAWANLVTTRLMMSKTHSS 304
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
R++ V SP + P F + GI
Sbjct: 305 RYIEVMFSPHTAPTTIPFRVTEQGI 329
>gi|354544865|emb|CCE41590.1| hypothetical protein CPAR2_801420 [Candida parapsilosis]
Length = 377
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 109/264 (41%), Gaps = 41/264 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GGV G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 135 LTTGSKQLDTLLGGGVETGSITEVFGEFRTGKSQLCHTLTVTCQLPIDMGGGEGKCLYID 194
Query: 144 VESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI 196
E TF R++ + + +++ E +L L ++E
Sbjct: 195 TEGTFRPNRLVSIAERYGLSPNDCLDNVAYARAYNAEHQLNLLHLAAQMMAE-------- 246
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTN 253
++ LL++DS+ +L + R + Q ++ + + LA+ I +V+TN
Sbjct: 247 ------SRFSLLIVDSIMSLYRTDYAGRGELSARQTSVAKFMRTLQRLADEFGIAVVITN 300
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QR 312
QV Q S +Y +K + G AHA T RL L+ G QR
Sbjct: 301 QVVAQVDGMSGMYNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGEQR 344
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
+ SP P F I GI
Sbjct: 345 ICKIYDSPCLPESDCVFAIYEDGI 368
>gi|209946344|gb|ACI97403.1| spindle B [Drosophila melanogaster]
gi|209946356|gb|ACI97409.1| spindle B [Drosophila melanogaster]
gi|209946384|gb|ACI97423.1| spindle B [Drosophila melanogaster]
gi|209946396|gb|ACI97429.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 106/258 (41%), Gaps = 39/258 (15%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKTQ L+LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
+IDS+ A+ ++ +H +L+ S A+ +V NQV
Sbjct: 211 IIDSVAAIFRLYNDYLERARHMRRLADALL-SYADKYNCAVVCVNQV------------- 256
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-----EAKSGQRFMNVEK----- 318
TR + LG WAH RL + + + G + + V K
Sbjct: 257 -----------ATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILY 305
Query: 319 SPTSPPLAFSFTINPSGI 336
SP +P F I G+
Sbjct: 306 SPETPNDFAEFLITADGV 323
>gi|347968908|ref|XP_003436320.1| AGAP013412-PA [Anopheles gambiae str. PEST]
gi|333467786|gb|EGK96693.1| AGAP013412-PA [Anopheles gambiae str. PEST]
Length = 339
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 42/266 (15%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
L T K LD L GG+ G +TE+ G TGKTQ C L++ LP G +G +YI
Sbjct: 101 QLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPVSQNGGEGKCLYI 160
Query: 143 DVESTF-------TSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK 195
D E TF T+ R +GA + +++ + +L++ ++E
Sbjct: 161 DTEGTFRPERLLATAERYKLVGADVLDNVAYARAYNTDHQMHLLMVASAMMAE------- 213
Query: 196 IKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
++ L+++DS +L + R A Q L+ + ++ LA+ + +++T
Sbjct: 214 -------SRYALIIVDSATSLYRTDYSGRGELAARQTHLAKFLRMLLRLADEFGVAVLIT 266
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ- 311
NQV Q D + ++ +K + G AHA T RL + G+
Sbjct: 267 NQVVAQV-DGAAMFNPDPKK----------------PIGGNIIAHASTTRLYMRKGRGES 309
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGIS 337
R + SP +F INP GI
Sbjct: 310 RICKIYDSPCLAEGEATFAINPDGIG 335
>gi|301098091|ref|XP_002898139.1| DNA repair protein RAD51 [Phytophthora infestans T30-4]
gi|262105500|gb|EEY63552.1| DNA repair protein RAD51 [Phytophthora infestans T30-4]
Length = 338
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 130/307 (42%), Gaps = 55/307 (17%)
Query: 46 LSEVRSA--LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGV 103
+SEV++ L E+V F TA ++E R L T +D L GG+ G
Sbjct: 66 ISEVKAEKMLKAAREMVNVGFTTAADVLESRKDLITL----STGSNAVDELLKGGIETGS 121
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM------- 156
+TE+ G TGKTQ C +L + LP GG +G +YID E TF +R+ +
Sbjct: 122 ITEMFGEFRTGKTQLCHQLCVTCQLPVDRGGGEGKALYIDTEGTFRPQRLQAIAERYGLD 181
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
G S + ++ E ++L+ ++E ++ L+++DS AL
Sbjct: 182 GDSVLDNVAFARAYNSEHQMQLLIQASAMMAE--------------SRFALVIVDSATAL 227
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY---PFQV 270
+ R A Q L+ + +T +A+ + +V+TNQ+ ++ +S ++ P Q
Sbjct: 228 FRTDYSGRGELAARQQELAKFLRALTRMADEFGVAVVITNQM--TANPDSGMFAKDPLQ- 284
Query: 271 QKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSF 329
+ G AHA RL L+ G+ R M V SP P +
Sbjct: 285 ------------------PIGGNIMAHASCTRLRLKKGRGENRVMKVVDSPILPESEAIY 326
Query: 330 TINPSGI 336
+I GI
Sbjct: 327 SITEQGI 333
>gi|312383584|gb|EFR28621.1| hypothetical protein AND_03252 [Anopheles darlingi]
Length = 338
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 113/266 (42%), Gaps = 42/266 (15%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
L T K LD L GG+ G +TE+ G TGKTQ C L++ LP G +G +YI
Sbjct: 100 QLTTGSKELDKLLGGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPVSQNGGEGKCLYI 159
Query: 143 DVESTF-------TSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK 195
D E TF T+ R +G + +++ + ++L+L
Sbjct: 160 DTEGTFRPERLLATAERYKLVGTDVLDNVAYARAYNTDHQMQLLMLA------------- 206
Query: 196 IKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
+++++ L+++DS +L + R A Q ++ + ++ LA+ + +++T
Sbjct: 207 -SAMMVESRYALIIVDSATSLYRTDYCGRGELAARQGHMAKFLRMLLRLADEFGVAVIIT 265
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ- 311
NQV Q D + ++ +K V G HA T RL L G+
Sbjct: 266 NQVVAQV-DGAAMFNPDPKK----------------PVGGNIIGHASTTRLYLRKGRGET 308
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGIS 337
R + SP P +F INP G+
Sbjct: 309 RICKIYDSPCLPESEATFAINPDGVG 334
>gi|261194837|ref|XP_002623823.1| DNA repair protein RAD51 [Ajellomyces dermatitidis SLH14081]
gi|239588361|gb|EEQ71004.1| DNA repair protein RAD51 [Ajellomyces dermatitidis SLH14081]
gi|239613363|gb|EEQ90350.1| DNA repair protein RAD51 [Ajellomyces dermatitidis ER-3]
gi|327351860|gb|EGE80717.1| DNA repair protein RAD51 [Ajellomyces dermatitidis ATCC 18188]
Length = 348
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 128/299 (42%), Gaps = 34/299 (11%)
Query: 46 LSEVRSA--LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGV 103
+SE ++A LA S IV F TA + +R + T K LD L GG+ G
Sbjct: 67 ISEQKAAKILAEASRIVPMGFTTATEMHARRNDLICI----TTGSKQLDTLLAGGIETGS 122
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163
+TE+ G TGK+Q C L++ LP GG +G +YID E TF R++ + A +
Sbjct: 123 ITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAV-AQRYGL 181
Query: 164 IFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ 223
+ +E+ I + + + L + + + + LL++DS AL
Sbjct: 182 V------GEEVLDNIAYARAYNSDHQLQLLNQASQMMCETRFSLLIVDSATALYRTDFSG 235
Query: 224 R---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKD 279
R A Q+ L+ + + +LA+ I +V+TNQV Q S ++ +K
Sbjct: 236 RGELANRQNHLAKFMRKLRTLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK------- 288
Query: 280 RTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L G+ R + SP P F IN GI
Sbjct: 289 ---------PIGGNIIAHASTTRLSLRKGRGETRICKIYDSPCLPESDCLFAINEDGIG 338
>gi|448508687|ref|XP_003865980.1| Rad51 protein [Candida orthopsilosis Co 90-125]
gi|380350318|emb|CCG20539.1| Rad51 protein [Candida orthopsilosis Co 90-125]
Length = 368
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 109/264 (41%), Gaps = 41/264 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GGV G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 126 LTTGSKQLDTLLGGGVETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLYID 185
Query: 144 VESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI 196
E TF R++ + + +++ E +L L ++E
Sbjct: 186 TEGTFRPNRLVSIAERYGLSPNDCLDNVAYARAYNAEHQLNLLHLAAQMMAE-------- 237
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTN 253
++ LL++DS+ +L + R + Q ++ + + LA+ I +V+TN
Sbjct: 238 ------SRFSLLIVDSIMSLYRTDYAGRGELSARQTSVAKFMRTLQRLADEFGIAVVITN 291
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QR 312
QV Q S +Y +K + G AHA T RL L+ G QR
Sbjct: 292 QVVAQVDGMSGMYNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGEQR 335
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
+ SP P F I GI
Sbjct: 336 ICKIYDSPCLPESDCVFAIYEDGI 359
>gi|209946354|gb|ACI97408.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 106/258 (41%), Gaps = 39/258 (15%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKTQ L+LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
+IDS+ A+ ++ +H +L+ S A+ +V NQV
Sbjct: 211 IIDSVAAIFRLYNDYLERARHMRRLADALL-SYADKYNCAVVCVNQV------------- 256
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-----EAKSGQRFMNVEK----- 318
TR + LG WAH RL + + + G + + V K
Sbjct: 257 -----------ATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILY 305
Query: 319 SPTSPPLAFSFTINPSGI 336
SP +P F I G+
Sbjct: 306 SPETPNDFAEFLITTDGV 323
>gi|52550007|gb|AAU83856.1| recombinase [uncultured archaeon GZfos34G5]
Length = 315
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 113/267 (42%), Gaps = 42/267 (15%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G L T D L GG+ +TE G G+GKTQ ++++ LP GGL+G VI
Sbjct: 77 GKLTTGSTSFDDLLGGGLETQALTEFYGEFGSGKTQIAHQIAVNVQLPPENGGLNGSVII 136
Query: 142 IDVESTFTSRRMIEM--GASSFP-EIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKV 198
ID E+TF R+ +M GAS P EI + +A+ +L + E++
Sbjct: 137 IDTENTFRPERIKDMAEGASLDPDEILKNIHVARAYNSNHQIL-------LVDKAERLAE 189
Query: 199 SLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTN 253
L+ + V+LL++DS A + R A Q ++ H+ + + +++TN
Sbjct: 190 ELIDTEKPVRLLIVDSATAHFRSEYVGRGTLADRQQKINKHLHDTLRFGDLNNAVVMITN 249
Query: 254 --QVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAVLGFHWAHAVTIRLVLEAKSG 310
QVRP D D TR H+V H T RL L G
Sbjct: 250 QVQVRP----------------DAFFGDPTRPIGGHVV-------GHTATFRLYLRKSKG 286
Query: 311 Q-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ R + SP P FT++ GI
Sbjct: 287 EKRIARLVDSPNLPEAEAVFTVSKVGI 313
>gi|21226559|ref|NP_632481.1| DNA repair and recombination protein RadA [Methanosarcina mazei
Go1]
gi|20904832|gb|AAM30153.1| recombination/repair protein RadA [Methanosarcina mazei Go1]
Length = 367
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 122/288 (42%), Gaps = 44/288 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T L++E+R L G L T D + GG+ +TEL G G+GKTQ +L+
Sbjct: 108 FETGDLVLERR----KLVGKLTTGCTEFDEMMGGGIETQAITELYGEFGSGKTQVAHQLA 163
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM--------GASSFPEIF-HSKGMAQEM 174
+ + +GGL G VI ID E+TF R+ +M G PE F + +A+
Sbjct: 164 VNVQMDREHGGLGGSVIIIDTENTFRPERITQMVNGLSEKYGMELNPEEFLQNIHVARAY 223
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L S + L++ + V+LL++DS+ A + R A Q L
Sbjct: 224 NSNHQILLVDSAVDLANELKE-----MGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKL 278
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAV 290
+ H+ + + +VVTNQV + K D D TR HIV
Sbjct: 279 NKHMHGLLRFGDLFNACVVVTNQV--------------MAKPDAFFGDPTRPIGGHIV-- 322
Query: 291 LGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
H T RL L G+ R + + SP+ P + +G++
Sbjct: 323 -----GHTATFRLYLRKSKGEKRIIRLVDSPSLPEGEAVVAVTTAGLT 365
>gi|71745272|ref|XP_827266.1| DNA recombination/repair protein RAD51/Dmc1 [Trypanosoma brucei]
gi|70831431|gb|EAN76936.1| RAD51/dmc1 protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261331479|emb|CBH14473.1| RAD51/dmc1 protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 349
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 106/251 (42%), Gaps = 30/251 (11%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ +TE G TGKTQ L + LP GG +G IY+D E+TF
Sbjct: 119 LDQLLGGGIESMSITEAFGEFRTGKTQIAHTLCVTCQLPISMGGGNGKAIYVDTEATFRP 178
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
R+ E F G+ E G ILV + + L + ++++Q LLV
Sbjct: 179 ERI-----KPIAERF---GLDVEAVLGNILVARAYTHEHQMHLLSMVAAKMVEDQFSLLV 230
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS+ AL R A Q L+ +S + LAE + + +TNQV S
Sbjct: 231 VDSVTALFRVDFSGRGELAERQQKLAKMLSNMIKLAEEYNVAVYITNQVVADPGGASMF- 289
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPL 325
+ + HI+ AHA T RL L G QR + SP+ P +
Sbjct: 290 ---------VADPKKPIGGHIL-------AHASTTRLSLRKGRGDQRVCKIYDSPSLPEV 333
Query: 326 AFSFTINPSGI 336
F+I+ GI
Sbjct: 334 ECVFSISEQGI 344
>gi|2696694|dbj|BAA23984.1| SpDmc1 [Schizosaccharomyces pombe]
Length = 336
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 122/284 (42%), Gaps = 34/284 (11%)
Query: 60 VCPP-FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF 118
+CP F TA+ + + R + T + L+ L GG+ +TE+ G GKTQ
Sbjct: 78 MCPANFSTAMEISQNRKKV----WSISTGSEALNGILGGGIQSMSITEVFGEFRCGKTQM 133
Query: 119 CLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI 178
L + A LP GG +G V +ID E TF R+ + E F A + I
Sbjct: 134 SHTLCVTAQLPRDMGGAEGKVAFIDTEGTFRPDRI-----KAIAERFGVD--ADQAMENI 186
Query: 179 LVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQR---APGQHPLSWH 234
+V + + + E + K+ ++ Q +LL++DS+ AL + R + Q L+
Sbjct: 187 IVSRAYNSEQQMEYITKLGTIFAEDGQYRLLIVDSIMALFRVDYSGRGELSERQKKLNIM 246
Query: 235 ISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
++ + ++E + + VTNQV+ D F DR H++
Sbjct: 247 LARLNHISEEFNVAVFVTNQVQA---DPGAAMMFASN-------DRKPVGGHVM------ 290
Query: 295 WAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
AHA RL+L G +R + SP P S+ I P GI+
Sbjct: 291 -AHASATRLLLRKGRGEERVAKLNDSPDMPEAECSYVITPGGIA 333
>gi|17136506|ref|NP_476740.1| spindle B [Drosophila melanogaster]
gi|3643817|gb|AAC42663.1| spindle B [Drosophila melanogaster]
gi|7299874|gb|AAF55050.1| spindle B [Drosophila melanogaster]
gi|201065577|gb|ACH92198.1| FI03211p [Drosophila melanogaster]
gi|209946376|gb|ACI97419.1| spindle B [Drosophila melanogaster]
gi|209946392|gb|ACI97427.1| spindle B [Drosophila melanogaster]
gi|209946398|gb|ACI97430.1| spindle B [Drosophila melanogaster]
gi|209946404|gb|ACI97433.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 106/258 (41%), Gaps = 39/258 (15%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKTQ L+LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
+IDS+ A+ ++ +H +L+ S A+ +V NQV
Sbjct: 211 IIDSVAAIFRLYNDYLERARHMRRLADALL-SYADKYNCAVVCVNQV------------- 256
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-----EAKSGQRFMNVEK----- 318
TR + LG WAH RL + + + G + + V K
Sbjct: 257 -----------ATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILY 305
Query: 319 SPTSPPLAFSFTINPSGI 336
SP +P F I G+
Sbjct: 306 SPETPNDFAEFLITAEGV 323
>gi|19114794|ref|NP_593882.1| RecA family recombinase Rhp51 [Schizosaccharomyces pombe 972h-]
gi|397843|dbj|BAA02963.1| SpRad51 [Schizosaccharomyces pombe]
gi|7708593|emb|CAB90141.1| RecA family recombinase Rhp51 [Schizosaccharomyces pombe]
Length = 365
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 115/271 (42%), Gaps = 35/271 (12%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GGV G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 124 ITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLYID 183
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + + + G +E+ + + + E L++ + ++
Sbjct: 184 TEGTFRPVRLL-----AVADRYGLNG--EEVLDNVAYARAYNADHQLELLQQAANMMSES 236
Query: 204 QVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LLV+DS AL G E A H L+ + + LA+ I +V+TNQV Q
Sbjct: 237 RFSLLVVDSCTALYRTDFSGRGELSARQMH-LARFMRTLQRLADEFGIAVVITNQVVAQV 295
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
D P + + G AH+ T RL L G QR +
Sbjct: 296 -DGISFNPDPKK-----------------PIGGNILAHSSTTRLSLRKGRGEQRICKIYD 337
Query: 319 SPTSPPLAFSFTINPSGISLLTDDGTEMVVP 349
SP P F IN G+ D E++ P
Sbjct: 338 SPCLPESEAIFAINSDGVG----DPKEIIAP 364
>gi|241950183|ref|XP_002417814.1| DNA double-strand-break repair and homologue-pairing meiosis
protein (DMC1/RAD51 homologue), putative [Candida
dubliniensis CD36]
gi|223641152|emb|CAX45529.1| DNA double-strand-break repair and homologue-pairing meiosis
protein (DMC1/RAD51 homologue), putative [Candida
dubliniensis CD36]
Length = 324
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 130/327 (39%), Gaps = 37/327 (11%)
Query: 17 NIFAARNITTAKDALSLTELELMK---LLDVELSEVRSALALVSEIVCPPFQTALLLMEQ 73
N + I + LS T L K L ++++ +++ A + + F A ++ E
Sbjct: 24 NKLKSAGICSITSVLSTTRRNLTKIKGLSEIKVEKIKEAAGKIKKC---GFIPATIVAEL 80
Query: 74 RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYG 133
R H+ T + D L GG+ +TE+ G GKTQ C L + A LP G
Sbjct: 81 RTKVFHI----TTGSRQFDEILGGGIQSMSITEVFGEFRCGKTQLCHTLCIAAQLPTDMG 136
Query: 134 GLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESL 193
G +G V YID E TF R+ S E + A I + + E +
Sbjct: 137 GGEGRVAYIDTEGTFRPDRI-----RSIAERYDVD--ADTCLENISYARALNSEHQIELV 189
Query: 194 EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIV 250
E++ L + +LL++DS+ A R Q L+ H+S +T +AE I +
Sbjct: 190 EQLGNELAEGTFRLLIVDSIMACFRVDFSGRGELNERQQKLNQHLSNLTRVAEDYNIAVF 249
Query: 251 VTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG 310
+TNQV+ + +K V G AHA R++L G
Sbjct: 250 LTNQVQSDPGASALFAAADGRK----------------PVGGHVLAHASATRILLRKGRG 293
Query: 311 -QRFMNVEKSPTSPPLAFSFTINPSGI 336
+R ++ SP P + I GI
Sbjct: 294 EERVAKLQDSPNMPEKECVYVIGEGGI 320
>gi|357479303|ref|XP_003609937.1| DNA repair protein RAD51-like protein [Medicago truncatula]
gi|355510992|gb|AES92134.1| DNA repair protein RAD51-like protein [Medicago truncatula]
Length = 341
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 144/346 (41%), Gaps = 56/346 (16%)
Query: 16 ANIFAARNITTAKDALSLT--------ELELMKLLDVELSEVRSALALVSEIVCPPFQTA 67
A+ AA +I KDA T +L+++ + ++V + ++V F +A
Sbjct: 32 ASGIAALDIKKLKDAGICTVESVAYTPRKDLLQIKGISDAKVDKIIEAAGKLVPMGFTSA 91
Query: 68 LLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAA 127
L QR + + T + LD L GG+ G +TEL G +GKTQ C L +
Sbjct: 92 SELHAQRESIIQI----TTGSRELDKILEGGIETGSITELYGEFRSGKTQLCHTLCVTCQ 147
Query: 128 LPAHYGGLDGGVIYIDVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILV 180
LP GG +G +YID E TF +R++++ G + +++ + R+L
Sbjct: 148 LPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGPDVLENVAYARAYNTDHQSRLL- 206
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHIS 236
L+ S+ +++ + L++IDS AL G E A H L+ +
Sbjct: 207 LEAASM-------------MVETRFALMIIDSATALYRTDFSGRGELSARQMH-LAKFLR 252
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+ LA+ + +V+TNQV Q D S ++ I + G A
Sbjct: 253 SLQKLADEFGVAVVLTNQVVSQV-DGSAMFA----------------GPQIKPIGGNIMA 295
Query: 297 HAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
HA T RL L G +R V SP F I G+S + D
Sbjct: 296 HATTTRLALRKGRGEERICKVISSPCLAEAEARFQILGEGVSDVKD 341
>gi|548664|sp|P36601.1|RAD51_SCHPO RecName: Full=DNA repair protein rhp51; AltName: Full=RAD51 homolog
gi|297522|emb|CAA80399.1| Rec A-like Protein [Schizosaccharomyces pombe]
gi|395378|emb|CAA80879.1| Rad51-like protein [Schizosaccharomyces pombe]
Length = 365
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 115/271 (42%), Gaps = 35/271 (12%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GGV G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 124 ITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLYID 183
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + + + G +E+ + + + E L++ + ++
Sbjct: 184 TEGTFRPVRLL-----AVADRYGLNG--EEVLDNVAYARAYNADHQLELLQQAANMMSES 236
Query: 204 QVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LLV+DS AL G E A H L+ + + LA+ I +V+TNQV Q
Sbjct: 237 RFSLLVVDSCTALYRTDFSGRGELSARQMH-LARFMRTLQRLADEFGIAVVITNQVVAQV 295
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
D P + + G AH+ T RL L G QR +
Sbjct: 296 -DGISFNPDPKK-----------------PIGGNILAHSSTTRLSLRKGRGEQRICKIYD 337
Query: 319 SPTSPPLAFSFTINPSGISLLTDDGTEMVVP 349
SP P F IN G+ D E++ P
Sbjct: 338 SPCLPESEAIFAINSDGVG----DPKEIIAP 364
>gi|395377|emb|CAA80878.1| RecA-like protein [Schizosaccharomyces pombe]
Length = 358
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 115/271 (42%), Gaps = 35/271 (12%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GGV G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 117 ITTGSKQLDTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLYID 176
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + + + G +E+ + + + E L++ + ++
Sbjct: 177 TEGTFRPVRLL-----AVADRYGLNG--EEVLDNVAYARAYNADHQLELLQQAANMMSES 229
Query: 204 QVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LLV+DS AL G E A H L+ + + LA+ I +V+TNQV Q
Sbjct: 230 RFSLLVVDSCTALYRTDFSGRGELSARQMH-LARFMRTLQRLADEFGIAVVITNQVVAQV 288
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
D P + + G AH+ T RL L G QR +
Sbjct: 289 -DGISFNPDPKK-----------------PIGGNILAHSSTTRLSLRKGRGEQRICKIYD 330
Query: 319 SPTSPPLAFSFTINPSGISLLTDDGTEMVVP 349
SP P F IN G+ D E++ P
Sbjct: 331 SPCLPESEAIFAINSDGVG----DPKEIIAP 357
>gi|124027840|ref|YP_001013160.1| DNA repair and recombination protein RadA [Hyperthermus butylicus
DSM 5456]
gi|123978534|gb|ABM80815.1| DNA repair and recombination protein [Hyperthermus butylicus DSM
5456]
Length = 323
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 130/316 (41%), Gaps = 46/316 (14%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T EL + L+ + + E + F+TAL + ++R T + T + LD
Sbjct: 38 TPQELSAAAGIPLTAAQRIIKAAREALDIRFKTALEVKKERMQTRKI----TTGSRNLDD 93
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLD-----GGVIYIDVESTF 148
L GG+ +TE G G+GKTQ C +L++ LP GGL +YID E TF
Sbjct: 94 LLGGGIETKTITEFFGEFGSGKTQICHQLAVNVQLPIEKGGLSTQDRVAKAVYIDTEGTF 153
Query: 149 TSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLL 208
R+ M + E+ I ++ + ++++ + + +KL+
Sbjct: 154 RWERLENMAKRWGLD-------PDEVMSNIFYIRAINSDHQMAIVDELFNIVPKENIKLV 206
Query: 209 VIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDE 262
++DS+ A PG E A Q L+ H+ + LAE + +V+TNQV RP
Sbjct: 207 IVDSVTSHFRAEYPG-RENLAARQQKLNRHLHQLAKLAEVYDLAVVITNQVMARP----- 260
Query: 263 SCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPT 321
D D T+ AV G HA +R+ L G +R + +P
Sbjct: 261 -----------DVFYGDPTQ------AVGGHVLYHAPGVRVQLRKSRGNKRIARIVDAPH 303
Query: 322 SPPLAFSFTINPSGIS 337
P F I GI+
Sbjct: 304 LPEGEAVFVITDYGIA 319
>gi|448082658|ref|XP_004195184.1| Piso0_005731 [Millerozyma farinosa CBS 7064]
gi|359376606|emb|CCE87188.1| Piso0_005731 [Millerozyma farinosa CBS 7064]
Length = 322
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 103/257 (40%), Gaps = 41/257 (15%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ +TE+ G GKTQ C L + A LP GG +G V YID E TF
Sbjct: 92 LDDVLGGGIMSMSLTEVFGEFRCGKTQLCHTLCVTAQLPRSMGGAEGKVAYIDTEGTFRP 151
Query: 151 RRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
R+ + + I +++ + E TE E++ V L
Sbjct: 152 DRIRAIAERFEVDPDACLENISYARALNSEHQ--------------TELSEQLGVQLADG 197
Query: 204 QVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+LL++DS+ AL + R Q L+ H+S + LAE + + +TNQV+
Sbjct: 198 SYRLLIVDSIMALFRVDYSGRGELNDRQQKLNQHLSALIRLAEDYNVAVFLTNQVQSDPG 257
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKS 319
+ +K V G AHA R++L G +R ++ S
Sbjct: 258 ASALFASADGRK----------------PVGGHILAHASATRILLRKGRGEERVAKLQDS 301
Query: 320 PTSPPLAFSFTINPSGI 336
P P + I GI
Sbjct: 302 PDMPERECVYVIGEGGI 318
>gi|452209062|ref|YP_007489176.1| DNA repair and recombination protein RadA [Methanosarcina mazei
Tuc01]
gi|34395788|sp|Q8PZN5.2|RADA_METMA RecName: Full=DNA repair and recombination protein RadA
gi|452098964|gb|AGF95904.1| DNA repair and recombination protein RadA [Methanosarcina mazei
Tuc01]
Length = 325
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 122/288 (42%), Gaps = 44/288 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T L++E+R L G L T D + GG+ +TEL G G+GKTQ +L+
Sbjct: 66 FETGDLVLERR----KLVGKLTTGCTEFDEMMGGGIETQAITELYGEFGSGKTQVAHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM--------GASSFPEIF-HSKGMAQEM 174
+ + +GGL G VI ID E+TF R+ +M G PE F + +A+
Sbjct: 122 VNVQMDREHGGLGGSVIIIDTENTFRPERITQMVNGLSEKYGMELNPEEFLQNIHVARAY 181
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L S + L++ + V+LL++DS+ A + R A Q L
Sbjct: 182 NSNHQILLVDSAVDLANELKE-----MGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKL 236
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAV 290
+ H+ + + +VVTNQV + K D D TR HIV
Sbjct: 237 NKHMHGLLRFGDLFNACVVVTNQV--------------MAKPDAFFGDPTRPIGGHIV-- 280
Query: 291 LGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
H T RL L G+ R + + SP+ P + +G++
Sbjct: 281 -----GHTATFRLYLRKSKGEKRIIRLVDSPSLPEGEAVVAVTTAGLT 323
>gi|290462499|gb|ADD24297.1| DNA repair protein RAD51 homolog 1 [Lepeophtheirus salmonis]
Length = 350
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 113/258 (43%), Gaps = 28/258 (10%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T K LD L GG+ G +TEL G TGK+Q C L++ LP +GG +G +YI
Sbjct: 112 QITTGSKELDKLLKGGIETGSITELFGEFRTGKSQLCHTLAVTCQLPIDHGGAEGKCLYI 171
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E TF R++ + E ++ G ++ + + + ++ L + + +
Sbjct: 172 DTEGTFRPERLL-----AVAERYNLSG--NDVLDNVAYARAYNSDHQSQLLIQASAMMAE 224
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ L+++DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q
Sbjct: 225 SRYALIIVDSSTALYRTDYSGRGELSTRQMHLARFLRMLLRLADEFGVGVVITNQVVAQV 284
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
D + ++ +K + G AHA T RL L G QR +
Sbjct: 285 -DGAAMFSADPKK----------------PIGGNIMAHASTTRLYLRKGRGEQRICKIYD 327
Query: 319 SPTSPPLAFSFTINPSGI 336
SP F I GI
Sbjct: 328 SPCLAEGEAIFAITADGI 345
>gi|27065821|pdb|1N0W|A Chain A, Crystal Structure Of A Rad51-Brca2 Brc Repeat Complex
Length = 243
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 108/264 (40%), Gaps = 30/264 (11%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T K LD L GG+ G +TE G TGKTQ C L++ LP GG +G YI
Sbjct: 5 QITTGSKELDKLLQGGIETGSITEXFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAXYI 64
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E TF R++ + E + G ++ + + + T+ L + ++
Sbjct: 65 DTEGTFRPERLL-----AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAXXVE 117
Query: 203 NQVKLLVIDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
++ LL++DS AL G E A H + L+ EF + +V+TNQV Q
Sbjct: 118 SRYALLIVDSATALYRTDYSGRGELSARQXHLARFLRXLLRLADEFG-VAVVITNQVVAQ 176
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
D + + +K + G AHA T RL L G+ R +
Sbjct: 177 V-DGAAXFAADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIY 219
Query: 318 KSPTSPPLAFSFTINPSGISLLTD 341
SP P F IN G+ D
Sbjct: 220 DSPCLPEAEAXFAINADGVGDAKD 243
>gi|213402507|ref|XP_002172026.1| DNA repair and recombination protein radA [Schizosaccharomyces
japonicus yFS275]
gi|212000073|gb|EEB05733.1| DNA repair and recombination protein radA [Schizosaccharomyces
japonicus yFS275]
Length = 358
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 151/361 (41%), Gaps = 45/361 (12%)
Query: 11 LPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLL 70
L +F ITT D L+L + + ++L EV++ + + + + P
Sbjct: 13 LADEYMQVFERERITTI-DLLTLEPTVISERCQIKLEEVQNLIEQLKKALLP-------- 63
Query: 71 MEQRAATEHLGGHL-PTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALP 129
QR + H T +D AL GG+ +TE+ G +G+GK+QFC++L L LP
Sbjct: 64 --QRITPDARETHFFTTGDTEIDKALHGGIALDHITEISGESGSGKSQFCIQLCLTVQLP 121
Query: 130 AHYGGLDGGVIYIDVESTFTSRRMIEMG---ASSFPEIFHSKGMAQEMAGRILVLQPTSL 186
GGLD ++I ES +RR+ ++ + +P S +++ R+ + L
Sbjct: 122 KSVGGLDRAAVFISTESGLETRRLFQLAKFLSLQYPNDDLSY-LSRHPGDRVYTILCPDL 180
Query: 187 SEFTESLEKIKVSLLQNQVK--LLVIDSMEALVPGVHEQRAPGQHP-------------- 230
E E + + ++ +L +V L+V+DS+ A E R HP
Sbjct: 181 -ESQEHIIEYQLPILMQRVNIGLIVLDSVAANYRA--ELRYSRNHPNASSLGNIATRGNQ 237
Query: 231 LSWHISLITSLAEFSRIPIVVTNQVRP---QSHDESCLYPFQVQKMDRILKDRTRYYSHI 287
L+ S + LA +V+ NQV +S+D+ L+ Q D T
Sbjct: 238 LAKLASNLRELAHKHNAAVVIANQVSDRVSRSYDQIGLFSLDYQSQWFNGWDDTDIDPKT 297
Query: 288 VAVLGFHWAHAVTIRLVL------EAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
+ LG W + VT RL L + R + + SP +P I G+ +++
Sbjct: 298 PS-LGLVWTNNVTTRLALLKRPNSATRKSLRKLRIVYSPIAPTSEIDIAITLEGLHTVSE 356
Query: 342 D 342
D
Sbjct: 357 D 357
>gi|256071033|ref|XP_002571846.1| DNA repair protein RAD51 [Schistosoma mansoni]
gi|353228592|emb|CCD74763.1| putative DNA repair protein RAD51 [Schistosoma mansoni]
Length = 338
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 110/270 (40%), Gaps = 42/270 (15%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
L T K LD L GG+ G +TEL G TGKTQ C L++ LP GG +G +YI
Sbjct: 100 QLTTGSKELDKLLQGGIETGSITELFGEFRTGKTQICHTLAVTCQLPIDMGGGEGKCLYI 159
Query: 143 DVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK 195
D E TF R++ + G+ + +++ + +L+ +SE
Sbjct: 160 DTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAYNTDHQMELLINAAAMMSE------- 212
Query: 196 IKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
++ LL++DS AL + R + Q L+ + + LA+ + +V+T
Sbjct: 213 -------SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRTLLRLADEFGVAVVIT 265
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ- 311
NQV Q D + ++ +K + G HA T RL L G+
Sbjct: 266 NQVVAQV-DGAAMFSADPKK----------------PIGGNIMGHASTTRLYLRKGRGET 308
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
R + SP P + I GI D
Sbjct: 309 RICKIYDSPCLPEAEAMYAILADGIGDAKD 338
>gi|448087220|ref|XP_004196277.1| Piso0_005731 [Millerozyma farinosa CBS 7064]
gi|359377699|emb|CCE86082.1| Piso0_005731 [Millerozyma farinosa CBS 7064]
Length = 294
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 102/250 (40%), Gaps = 27/250 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ +TE+ G GKTQ C L + A LP GG +G V YID E TF
Sbjct: 64 LDDVLGGGIMSMSLTEVFGEFRCGKTQLCHTLCVTAQLPRSMGGAEGKVAYIDTEGTFRP 123
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+ + E F A I + + TE E++ V L +LL++
Sbjct: 124 DRI-----RAIAERFEVDPDA--CLENISYARALNSEHQTELSEQLGVQLADGSYRLLIV 176
Query: 211 DSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
DS+ AL + R Q L+ H+S + LAE + + +TNQV+ +
Sbjct: 177 DSIMALFRVDYSGRGELNDRQQKLNQHLSALIRLAEDYNVAVFLTNQVQSDPGASALFAS 236
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLA 326
+K V G AHA R++L G +R ++ SP P
Sbjct: 237 ADGRK----------------PVGGHILAHASATRILLRKGRGEERVAKLQDSPDMPERE 280
Query: 327 FSFTINPSGI 336
+ I GI
Sbjct: 281 CVYVIGEGGI 290
>gi|58262116|ref|XP_568468.1| meiotic recombination-related protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57230641|gb|AAW46951.1| meiotic recombination-related protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 323
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 121/288 (42%), Gaps = 34/288 (11%)
Query: 54 ALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGT 113
A V ++ P F T + ++RA ++ T K +DA L GG+ +TE+ G T
Sbjct: 59 AKVEKLKPPAFLTGTEIADRRANVVYI----TTGSKSVDAMLGGGIATQSITEVFGEYRT 114
Query: 114 GKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQE 173
GKTQ C L + LP GG G V YID E TF R+ + A F G+
Sbjct: 115 GKTQLCHTLCVSTQLPEDQGGGSGKVAYIDTEGTFRPDRVRAV-ADRF-------GVDSN 166
Query: 174 MA-GRILVLQPTSLSEFTESLEKIKVSLLQNQV-KLLVIDSMEALVPGVHEQR---APGQ 228
MA +L + S + L + + ++ + KLL++DS+ L + R + Q
Sbjct: 167 MALDNVLCARAWSSEHQCDLLVDLAIRFVEERAYKLLIVDSIMNLFRQDYSGRGELSERQ 226
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIV 288
L+ ++ + LAE I IV+TNQV+ + K
Sbjct: 227 QKLNQFLARLQKLAEEFNIAIVLTNQVQADPGAAAMFAAASSAK---------------- 270
Query: 289 AVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSG 335
V G AHA R+ L G +R ++ SP P ++T+ G
Sbjct: 271 PVGGHILAHASATRIALRKGRGDERIAKLQDSPDMPEGEATYTLRTGG 318
>gi|393907809|gb|EFO15910.2| meiotic recombination protein DMC1/LIM15 [Loa loa]
Length = 315
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 148/344 (43%), Gaps = 49/344 (14%)
Query: 13 KSIANI--FAARNITTAKDALSLTELELMKLLDVE-LSEVRSALALVSEIVCP----PFQ 65
K++A+I A+ I T K + T +L DV+ LSE + + + EI C F
Sbjct: 6 KNVADIKKLASVGICTIKGIMMTTR---KRLCDVKGLSEAK--VDKIKEIACKLSNSGFI 60
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL + E+R L + T + LD L GG+ +TE+ G TGKTQ L ++
Sbjct: 61 TALEVTERR----KLCYRISTGSRELDKLLGGGIESQAITEVFGEFRTGKTQLSHTLCVM 116
Query: 126 AALPAHYGGLDGG-VIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQE-MAGRILVLQP 183
+ + GG VIYID E+TF R+ ++ E F M QE M IL +
Sbjct: 117 CQIASETSNFKGGKVIYIDTENTFRPDRLRQIN-----ERFK---MDQEAMLDNILYARA 168
Query: 184 TSLSEFTESLEKIKVSLLQ--NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLI 238
+ E L+ + + KLLV+DS+ AL + R A Q L+ +S +
Sbjct: 169 YTSDHQMELLDFVAAKFHEELGVFKLLVVDSIMALFRVDYSGRGELAERQQRLAQMLSRL 228
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
+AE + + +TNQ+ + D FQ V G AHA
Sbjct: 229 QKIAEEYNVAVFITNQM---TADPGAGITFQADPKK--------------PVGGHILAHA 271
Query: 299 VTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
T R++L+ G+ R + SP P +F I G++ D
Sbjct: 272 STTRIMLKKGRGETRIAKIYDSPDLPENEATFAIATIGVTDAKD 315
>gi|355693597|gb|EHH28200.1| hypothetical protein EGK_18581 [Macaca mulatta]
gi|387540488|gb|AFJ70871.1| DNA repair protein XRCC3 [Macaca mulatta]
Length = 346
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 148/346 (42%), Gaps = 39/346 (11%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 10 PRIIAAIKKAK-LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALHL 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+Q+ L LD+ L GG+P +TEL G + GKTQ L+L L P
Sbjct: 69 HQQKERFPAQHQRLSLGCPVLDSLLRGGLPLDGITELAGRSSVGKTQLALQLCLAVQFPR 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILVLQPT 184
+GGL+ G +YI E F +R+ ++ A + P K +I +
Sbjct: 129 QHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQK---LRFGSQIFIEHVA 185
Query: 185 SLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITSLA 242
+ E + +K+ V L + +L+VIDS+ A P E + P + + SL +L
Sbjct: 186 DVDALLECVNKKVPVLLSRGMARLVVIDSVAA--PFRCEFDSQASAPRARRLQSLGAALR 243
Query: 243 EFS---RIPIVVTNQVRPQSHDESCLY-PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
E S + P++ NQV ++ + P + + LG WA+
Sbjct: 244 ELSSAFQSPVLCINQVTEAMEEQGAAHGPLGF------------WDERVSPALGITWANQ 291
Query: 299 VTIRLVLEAKSGQ--------RFMNVEKSPTSPPLAFSFTINPSGI 336
+ +RL+ E + R + V +P PP + S+TI+ G+
Sbjct: 292 LLVRLLAERLREEEAALGCPARTLRVLFAPHLPPSSCSYTISAEGV 337
>gi|307212541|gb|EFN88264.1| DNA repair protein RAD51-like protein 1 [Harpegnathos saltator]
Length = 340
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 31/285 (10%)
Query: 57 SEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKT 116
S++V F++A + + RA ++ T K LD L GG+ G +TEL G +GK+
Sbjct: 79 SKLVNMGFRSATEIHQIRANIVYI----TTGSKELDNLLGGGIETGSITELFGEFRSGKS 134
Query: 117 QFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAG 176
Q C L++ LP GG +G +YID E+ F R+ ++ E + G +
Sbjct: 135 QLCHTLAVNCQLPISMGGAEGRCLYIDTENGFRPERL-----TAVAERYKISG--DSVLD 187
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSW 233
+ + + T+ + + + + + LL+IDS +L + R + Q L+
Sbjct: 188 NVACARAFNTDHQTQLVVQASAMMTEARYALLIIDSATSLYRTDYCGRGELSERQQHLAR 247
Query: 234 HISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGF 293
+ ++ +A+ I +V+TNQV Q + ++ +K + G
Sbjct: 248 FLRMLLRIADEHGIAVVITNQVVAQVDGAASMFGGDQKK----------------PIGGH 291
Query: 294 HWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
AH+ T RL L G+ R + SP P +F I G+S
Sbjct: 292 ILAHSSTTRLYLRKGRGETRICKIYDSPCLPENEATFAIYSDGVS 336
>gi|452825485|gb|EME32481.1| DNA repair protein isoform 2 [Galdieria sulphuraria]
Length = 312
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 110/261 (42%), Gaps = 33/261 (12%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T LD L GG+ +TE+ G +GKTQ L + A LP G +G V YI
Sbjct: 73 HITTGSSALDELLGGGIETSSITEVFGEFRSGKTQLAHTLCVTAQLPKSVNGAEGRVAYI 132
Query: 143 DVESTFTSRRMIEMGASSF---PEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVS 199
D E+ F R++E+ A F PE E+ ILV + + E L I
Sbjct: 133 DTENCFRPERIVEI-AERFELDPE---------EVLDNILVARAYTSEHQIELLVHIAAK 182
Query: 200 LLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256
+++ LL++DS AL + R + Q L+ +S + L+E + + +TNQV
Sbjct: 183 MVEETFGLLIVDSATALFRVDYSGRGELSERQQKLNRFMSQLLKLSEQFNLAVFITNQVM 242
Query: 257 PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMN 315
+ ++ +K V G AHA T R++L G QR
Sbjct: 243 STPDGSAGMFVVDPKK----------------PVGGHVIAHASTTRIMLRKGRGEQRVAK 286
Query: 316 VEKSPTSPPLAFSFTINPSGI 336
+ SP +F ++ G+
Sbjct: 287 IYDSPMLAENEATFEVSSGGV 307
>gi|170584581|ref|XP_001897076.1| DNA repair protein RAD51 homolog 1 [Brugia malayi]
gi|158595535|gb|EDP34081.1| DNA repair protein RAD51 homolog 1, putative [Brugia malayi]
Length = 363
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 133/312 (42%), Gaps = 34/312 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL + + + A +++V F TA + +R+ +G T + LD L
Sbjct: 79 ELYAIKGISEQKAEKIFAEAAKLVPMGFTTASEVHVKRSEIIQIG----TGSRELDRLLG 134
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GGV G +TE+ G TGK+Q C L+++ LP GG +G ++ID E TF R++ +
Sbjct: 135 GGVETGSITEIFGEFRTGKSQLCHTLAVMCQLPVDMGGAEGKCLWIDTEGTFRPERLLAV 194
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
K Q++ ++ + + + L + + +++ LLV+DS +L
Sbjct: 195 AE-------RHKLSPQDVLDNVVYARCYNTDHQMQLLVQASAMMAESRYALLVVDSATSL 247
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
R A Q L+ ++ ++ L++ + +V+TNQV Q ++ + +K
Sbjct: 248 FRTDFSGRGELASRQMMLAKYLRMLLKLSDEFGVAVVITNQVVSQVDAGCGMFQGETKK- 306
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIR-LVLEAKSGQ---RFMNVEKSPTSPPLAFSF 329
+ G AHA T R L L + G+ R + SP P F
Sbjct: 307 ---------------PIGGNIMAHASTTRQLALYLRKGRGEARICKIYDSPCLPESEAMF 351
Query: 330 TINPSGISLLTD 341
I GI +TD
Sbjct: 352 AITTHGIDDVTD 363
>gi|225714670|gb|ACO13181.1| DNA repair protein RAD51 homolog 1 [Lepeophtheirus salmonis]
Length = 350
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 110/265 (41%), Gaps = 42/265 (15%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T K LD L GG+ G +TEL G TGK+Q C L++ LP +GG +G +YI
Sbjct: 112 QITTGSKELDKLLKGGIETGSITELFGEFRTGKSQLCHTLAVTCQLPIDHGGAEGKCLYI 171
Query: 143 DVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK 195
D E TF R++ + G + +++ + ++L+ ++E
Sbjct: 172 DTEGTFRPERLLAVAERYNLSGNDVLDNVAYARAYNSDHQSQLLIQASAMMAEL------ 225
Query: 196 IKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
+ L+++DS AL + R + Q L+ + ++ LA+ + +V+T
Sbjct: 226 --------RYALIIVDSSTALYRTDYSGRGELSTRQMHLARFLRMLLRLADEFGVGVVIT 277
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-Q 311
NQV Q D + ++ +K + G AHA T RL L G Q
Sbjct: 278 NQVVAQV-DGAAMFSADPKK----------------PIGGNIMAHASTTRLYLRKGRGEQ 320
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
R + SP F I GI
Sbjct: 321 RICKIYDSPCLAEGEAIFAITADGI 345
>gi|256084116|ref|XP_002578278.1| DNA repair protein rad51 homolog 3 r51h3 [Schistosoma mansoni]
Length = 999
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 128/305 (41%), Gaps = 48/305 (15%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
++ + + D L GG P G +TEL G G GKTQFCL+ + +P + GL+G ++
Sbjct: 707 NYIVSMCRSFDDLLGGGFPTGRLTELCGEPGVGKTQFCLQACVNVQIPKWFSGLNGQALF 766
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSE-FTESLEKIKVSL 200
+D E F R+ +M ++ +A + P E F + SL
Sbjct: 767 LDTEGNFIPERVRQMASA----------LADHCKRHYIESNPERTDESFIKQYCPTVESL 816
Query: 201 LQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLA-----EFSRIP------- 248
+ + + D ++ L H ++ QHPL + ++ S+A +F IP
Sbjct: 817 MSGIHYIRITDHLKLLAVCRHLEQFCDQHPLI-RLIVVDSIALPFRYDFDDIPQRNRLLA 875
Query: 249 ----------------IVVTNQVRPQSHDESCLYPFQVQKM---DRILKDRTR--YYSHI 287
+++TNQ+ + D L QV + D++ K++ R S +
Sbjct: 876 SVTQMLLCVAGRQKAAVILTNQITTK-FDAKNLNSEQVDCVIEGDKVGKEQCRNDQNSCL 934
Query: 288 VAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI-SLLTDDGTE 345
V LG W H ++R+ L +G R + + K P P + I GI L+ ++
Sbjct: 935 VPALGDSWGHICSLRVFLARLTTGIRQVRLLKHPGKPYGVGYYQITTGGIRDLIQNNKCN 994
Query: 346 MVVPE 350
+PE
Sbjct: 995 KHLPE 999
>gi|432330176|ref|YP_007248319.1| DNA repair and recombination protein RadA [Methanoregula formicicum
SMSP]
gi|432136885|gb|AGB01812.1| DNA repair and recombination protein RadA [Methanoregula formicicum
SMSP]
Length = 325
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 121/287 (42%), Gaps = 46/287 (16%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T + EQR L +P LD L GG+ +TE+ G G+GK+Q +++
Sbjct: 68 FKTGKDIFEQRKDVRKLSFRVPE----LDTLLGGGLETQAITEMYGEFGSGKSQIVHQMA 123
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM----GASSFPEIFHSKGMAQEMAGRIL 179
+ LP GGL+G VIYID E+TF R+ +M G + P+ QE I
Sbjct: 124 VNVQLPEEEGGLNGSVIYIDTENTFRPERIEQMVNGLGLDNIPD-------TQEFLDNIH 176
Query: 180 VLQPTSLSE---FTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPL 231
+ + + ++ ++ L +N VKL +IDS+ A + R A Q L
Sbjct: 177 IARAHTSDHQMLLIDNSRELATELKENGKPVKLFIIDSLTAHFRAEYAGRGTLAARQQKL 236
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
+ H+ + L + +VTNQV + + ++ +
Sbjct: 237 NRHMHELFKLIDEHNAVGLVTNQV---------------------MSNPAVFFGDPTKPI 275
Query: 292 GFHW-AHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G + H T RL L ++K G+R + SP P F + +G+
Sbjct: 276 GGNIVGHTATFRLYLRKSKGGKRIARLVDSPNLPEGEAPFMVEEAGL 322
>gi|380492247|emb|CCF34743.1| DNA repair protein rhp51 [Colletotrichum higginsianum]
Length = 350
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 131/292 (44%), Gaps = 36/292 (12%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + ++R +E + + T K LD L GG+ G VTEL G
Sbjct: 78 LAEASKLVPMGFTTATEMHQRR--SELI--SITTGSKQLDTLLAGGIETGSVTELFGEFR 133
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + A+ F G++
Sbjct: 134 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAV-ANRF-------GLSG 185
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP----GVHEQRAPG 227
+E+ + + + + L++ + + + LL++DS AL G E +
Sbjct: 186 EEVLDNVAYARAYNSDHQLQLLQQAGAMMCETRFSLLIVDSATALYRTDFLGRGELSSRQ 245
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSH 286
H L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 246 TH-LAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK-------------- 290
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T R+ L+ G+ R + SP P F IN GI
Sbjct: 291 --PIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDCLFAINEDGIG 340
>gi|242050664|ref|XP_002463076.1| hypothetical protein SORBIDRAFT_02g037320 [Sorghum bicolor]
gi|241926453|gb|EER99597.1| hypothetical protein SORBIDRAFT_02g037320 [Sorghum bicolor]
Length = 344
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 132/317 (41%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S+IV F +A L QR + T + LD L
Sbjct: 64 DLVQIKGISEAKVDKIIEAASKIVPLGFTSASQLHAQRLEIIQV----TTGSRELDKILE 119
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 120 GGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 179
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L+V
Sbjct: 180 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MIETRFALMV 225
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H + SL EF + +V+TNQV Q D S +
Sbjct: 226 VDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFG-VAVVITNQVVAQV-DGSAM 283
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPP 324
+ + G AHA T RL L G +R V SP
Sbjct: 284 FA----------------GPQFKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAE 327
Query: 325 LAFSFTINPSGISLLTD 341
F + G++ + D
Sbjct: 328 AEARFQLASEGVADVKD 344
>gi|357616274|gb|EHJ70106.1| Rad51-like protein [Danaus plexippus]
Length = 338
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 122/296 (41%), Gaps = 46/296 (15%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
L+ S++V F TA ++RA L T K LD L GG+ G +TE+ G
Sbjct: 74 LSEASKLVPMGFTTATEFHQKRAEIIQL----TTGSKELDRLLGGGIETGSITEIFGEFR 129
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG-------ASSFPEIF 165
TGKTQ C L++ LP G +G +YID E TF R++ + A+ +
Sbjct: 130 TGKTQLCHTLAVTCQLPIEQSGGEGKCMYIDTEGTFRPERLLAVAQRYGMESAAVLDNVA 189
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA 225
+++ + ++LV ++E ++ LL++DS AL + R
Sbjct: 190 YARAYNTDHQTQLLVQACAMMAE--------------SRYSLLIVDSATALYRTDYSGRG 235
Query: 226 ---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR 282
Q L + ++ LA+ + +++TNQV Q D ++ +K
Sbjct: 236 ELNSRQLHLGRFMRMLLRLADEFGVAVIITNQVVAQV-DSVGVFNADTKK---------- 284
Query: 283 YYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L G R + SP P F I+ GI+
Sbjct: 285 ------PIGGHIIAHASTTRLYLRKGRGDNRVCKIYDSPCLPETEAMFAISTEGIT 334
>gi|330919603|ref|XP_003298683.1| hypothetical protein PTT_09464 [Pyrenophora teres f. teres 0-1]
gi|311328005|gb|EFQ93221.1| hypothetical protein PTT_09464 [Pyrenophora teres f. teres 0-1]
Length = 348
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 127/292 (43%), Gaps = 36/292 (12%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S+IV F TA + +R +E + + T K LD L GG+ G +TE+ G
Sbjct: 73 LAEASKIVPMGFTTATEMHSRR--SELI--SITTGSKQLDTLLAGGIETGSITEIFGEFR 128
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G IYID E TF R + + A+ F G++
Sbjct: 129 TGKSQLCHTLAVTCQLPFDMGGGEGKCIYIDTEGTFRPVRCLAV-ANRF-------GLSG 180
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP----GVHEQRAPG 227
+E+ + + + E L + + + + LLV+DS AL G E A
Sbjct: 181 EEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLLVVDSAMALYRTDFVGRGELSARQ 240
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSH 286
H L+ + + LA+ I +++TNQV Q S ++ +K
Sbjct: 241 TH-LAKFMRTLQRLADEFGIAVIITNQVVAQVDGGPSAMFNPDPKK-------------- 285
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L G+ R + SP P F IN GI
Sbjct: 286 --PIGGNIIAHASTTRLSLRKGRGETRVCKIYDSPCLPESDCLFAINEDGIG 335
>gi|224028841|gb|ACN33496.1| unknown [Zea mays]
gi|414881529|tpg|DAA58660.1| TPA: hypothetical protein ZEAMMB73_968311 [Zea mays]
Length = 270
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 114/268 (42%), Gaps = 35/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T L+ L GG+ VTE+ G G GKTQ ++L++ +P GGL G +YI
Sbjct: 10 HITTGSGDLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVECGGLGGKAVYI 69
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV-LQPT---------SLSEFTES 192
D E +F R+ ++ +I + E + + LQP + +TE
Sbjct: 70 DTEGSFMVERVYQIAEGCIRDILEHFPHSHEKSSSVQKQLQPERFLADIYYFRICSYTEQ 129
Query: 193 LEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ I K V++++IDS+ E A LS + +A+ +
Sbjct: 130 IAVINYMEKFLREHKDVRIVIIDSVTFHFRQDFEDLALRTRVLSGLSLKLMKIAKTYNLA 189
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + + S FQ + LG W+H+ T RL+L
Sbjct: 190 VVLLNQVTTKFTEGS----FQ-----------------LTLALGDSWSHSCTNRLILHWN 228
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R+ +++KSP+ P + + + GI
Sbjct: 229 GNERYAHLDKSPSLPVASAPYAVTGKGI 256
>gi|294657730|ref|XP_460030.2| DEHA2E16742p [Debaryomyces hansenii CBS767]
gi|199432908|emb|CAG88286.2| DEHA2E16742p [Debaryomyces hansenii CBS767]
Length = 330
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 101/257 (39%), Gaps = 27/257 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GGV +TE+ G GKTQ C L + A LP GG +G V YID
Sbjct: 93 LSTGSKQLDDVLGGGVSSMSITEVFGEFRCGKTQLCHTLCVTAQLPKEMGGSEGKVAYID 152
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R+ S E F A I + + E E++ +
Sbjct: 153 TEGTFRPDRI-----RSIAERFQVD--ADACLENISYARALNSEHQMELAEQLGLQFADG 205
Query: 204 QVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+LLV+DS+ A + R Q L+ H+S + LAE + + +TNQV+
Sbjct: 206 TYRLLVVDSIMACFRVDYSGRGELNDRQQKLNQHLSSLIRLAEDYNVAVFLTNQVQSDPG 265
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKS 319
S +K V G AHA R++L G +R ++ S
Sbjct: 266 ASSLFAAADGRK----------------PVGGHILAHASATRILLRKGRGEERVAKLQDS 309
Query: 320 PTSPPLAFSFTINPSGI 336
P + I GI
Sbjct: 310 PDMAEKECVYVIGEGGI 326
>gi|325190097|emb|CCA24579.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 401
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 141/311 (45%), Gaps = 35/311 (11%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTAL-LLMEQRAATEHLGGHLPTRLKGLDAAL 95
++ + LD+ +++ L VS + P Q A L + + L +LPT LD AL
Sbjct: 49 QIAQKLDLSIADTERFLDSVSLYLAPTPQNAFELFLANVNHPKQLRTNLPT----LDTAL 104
Query: 96 CGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLD---GGVIYIDVESTFTSRR 152
GG+ G +TE+ G AG GKTQF + ++L D VIY D E+T R
Sbjct: 105 GGGLHLGAITEIAGIAGVGKTQFAMTVALQILSDEILLAKDERTSTVIYFDAEATLNVER 164
Query: 153 M----IEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSL-LQNQVKL 207
+ I + + F A+++ R+L+++ +L++F L K+ +L + + KL
Sbjct: 165 LKLDQIATAMLNTRKGFCRDYRAEDLLDRLLIIKVDTLAQFLTKLLKLGQNLRMMSGTKL 224
Query: 208 LVIDSMEAL-VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
L++DS+ AL V + E + L+ + L++ +I ++TN+ S +E L
Sbjct: 225 LIVDSIAALYVHSIGESLTKKEFWLTRIARELKFLSDNFQICALLTNRA-VSSFNEHGLR 283
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLA 326
+ LG W+H VT RL L+ R +++ KSP++
Sbjct: 284 GSK-------------------PSLGDLWSHYVTYRLSLDWDREFRVLSITKSPSTKIAR 324
Query: 327 FSFT-INPSGI 336
F I+ G+
Sbjct: 325 VQFVDISNEGV 335
>gi|225444585|ref|XP_002273803.1| PREDICTED: DNA repair protein RAD51 homolog [Vitis vinifera]
gi|297738498|emb|CBI27743.3| unnamed protein product [Vitis vinifera]
Length = 337
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 113/263 (42%), Gaps = 44/263 (16%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G +GKTQ C L + LP GG +G +YID E TF
Sbjct: 107 LDKILEGGLETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRP 166
Query: 151 RRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
+R++++ GA + +++ + R+L L+ S+ +++
Sbjct: 167 QRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MVET 212
Query: 204 QVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ L+++DS AL G E A H L+ + + LA+ + +V+TNQV Q
Sbjct: 213 RFALMIVDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVITNQVVAQV 271
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
D S ++ I + G AHA T RL L G +R V
Sbjct: 272 -DGSAIFA----------------GPQIKPIGGNIMAHASTTRLALRKGRGEERICKVIS 314
Query: 319 SPTSPPLAFSFTINPSGISLLTD 341
SP F I+ G++ + D
Sbjct: 315 SPCLAEADARFQISAEGVTDVKD 337
>gi|145352283|ref|XP_001420481.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580715|gb|ABO98774.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 358
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 34/262 (12%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ + +DA L GG +TE+ G GKTQ C +++ +P GG V +I
Sbjct: 121 HITSGAAAVDAILGGGFESRAITEIYGEWRCGKTQLCHTIAVTTQMPVEMGGGCAKVAWI 180
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
D E+TF R++++ A+ F G+ A + ++V + ++ + +L I +
Sbjct: 181 DTENTFRGDRLVQI-ANRF-------GLDADAVLSNVMVARVDTVDQMMHALIAIGAKMA 232
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVR-- 256
+ KLLV+DS+ A+ + R + Q L+ +S + +AE + +V+TNQV+
Sbjct: 233 EEPFKLLVVDSIMAIFRVDYVARGELSERQQTLNQFLSRLRKIAEEFNVAVVLTNQVQSD 292
Query: 257 PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL-VLEAKSGQRFMN 315
P + + P + A+ G AHA TIRL V + ++ R +
Sbjct: 293 PGGMAFAGVEPKK-------------------AIGGHVLAHASTIRLMVRKGRAEARVLK 333
Query: 316 VEKSPTSPPLAFSFTINPSGIS 337
V + PT F I G++
Sbjct: 334 VLQGPTLKEDEAEFQITEGGVT 355
>gi|194765033|ref|XP_001964632.1| GF23286 [Drosophila ananassae]
gi|190614904|gb|EDV30428.1| GF23286 [Drosophila ananassae]
Length = 234
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 4/171 (2%)
Query: 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145
T +KG+D GG+ G +TEL+G +GTGKTQ CL L L +P GGL+G ++ID
Sbjct: 10 TGIKGVDENYGGGISLGHITELIGNSGTGKTQMCLNLCLNVQIPKTAGGLEGSALFIDTR 69
Query: 146 STFTSRRMIEMGASSFPEIFHS--KGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
F R++++ + H A +M + ++ +S ++ S+ L +
Sbjct: 70 QDFNPHRLLQLATELERQYAHKVPDFKALKMLKNVYYVRCSSEAQLMASVLSCHRHLENH 129
Query: 204 Q-VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTN 253
+ +KL+VIDS+ + + + + L H S+ +L ++ V+TN
Sbjct: 130 KNIKLIVIDSLSFTLQMIENKSKMFELLLELHESM-RNLQRTYKVAWVITN 179
>gi|403413652|emb|CCM00352.1| predicted protein [Fibroporia radiculosa]
Length = 340
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 133/310 (42%), Gaps = 33/310 (10%)
Query: 38 LMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCG 97
LM++ + + LA +I+ FQ+A + +R+ H+ T K LD+ L G
Sbjct: 58 LMQIKGISEQKADKILAEAHKIIPLGFQSATEVHARRSELVHI----TTGSKNLDSLLGG 113
Query: 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157
G+ G +TEL G TGK+Q C L++ LP GG +G +YID E TF R++
Sbjct: 114 GIETGSITELFGEFRTGKSQICHTLAVTCQLPVDMGGGEGKCLYIDTEGTFRPVRLL--- 170
Query: 158 ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217
+ E G +E+ + + + + L + +++ LL+IDS AL
Sbjct: 171 --AVAERLGLNG--EEVLDNVAYARAYNADHQYQLLTSASALMSESRFCLLIIDSCTALY 226
Query: 218 ----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
G E A H L + + LA+ I +V++NQV S+ ++ P+ +
Sbjct: 227 RTDFNGRGELSARQAH-LGKFLRTLQRLADEFGIAVVMSNQV--MSNPDASAGPYVANEK 283
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTIN 332
I G AHA T R+ L+ G R + SP P +F I
Sbjct: 284 KPI--------------GGNILAHASTTRVQLKKGRGVNRQAKIYDSPCLPESETTFAIL 329
Query: 333 PSGISLLTDD 342
SGI +D
Sbjct: 330 ASGIGDPEED 339
>gi|440802621|gb|ELR23550.1| meiotic recombinase Dmc1, putative [Acanthamoeba castellanii str.
Neff]
Length = 353
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 106/255 (41%), Gaps = 28/255 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGV +TE+ G TGKTQ C L + LP + G +G V YID E TF
Sbjct: 123 LDQLLGGGVETMSITEVFGEFRTGKTQLCHTLCVTTQLPLNMSGGNGKVAYIDTEGTFRP 182
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+ E F MA I+ + + E + +I ++++Q +LL++
Sbjct: 183 ERI-----KPIAERFGLDPMA--ALDNIVYARAFTHEHQLELIVQIAAKMVEDQYRLLIV 235
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
DS+ AL + R A Q L +S + +AE + + +TNQV ++
Sbjct: 236 DSITALFRVDYSGRGELAERQQKLGRMLSKLQKIAEEFNVAVFITNQVTADPGG-GAMFV 294
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLA 326
+K + G AHA T RL L G QR + SP P
Sbjct: 295 ADAKK----------------PIGGHVLAHASTTRLSLRKGRGEQRICKIFDSPCLPETE 338
Query: 327 FSFTINPSGISLLTD 341
+ I+ GI+ D
Sbjct: 339 CVYQISNEGITDAKD 353
>gi|238878354|gb|EEQ41992.1| meiotic recombination protein DMC1 [Candida albicans WO-1]
Length = 353
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 27/258 (10%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T K + L GG+ +TE+ G GKTQ C L + A LP GG +G V YI
Sbjct: 115 HITTGSKQFNEILGGGIQSMSITEVFGEFRCGKTQLCHTLCVAAQLPTDMGGGEGRVAYI 174
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E TF R+ S E + A I + + E +E++ L +
Sbjct: 175 DTEGTFRPDRI-----RSIAERYGVD--ADTCLENISYARALNSEHQIELVEQLGNELAE 227
Query: 203 NQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+LL++DS+ A + R Q L+ H+S +T +AE I + +TNQV+
Sbjct: 228 GTFRLLIVDSIMACFRVDYSGRGELNERQQKLNQHLSNLTRVAEDYNIAVFLTNQVQSDP 287
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
+ +K V G AHA R++L G +R ++
Sbjct: 288 GASALFAAADGRK----------------PVGGHVLAHASATRILLRKGRGEERVAKLQD 331
Query: 319 SPTSPPLAFSFTINPSGI 336
SP P + I GI
Sbjct: 332 SPNMPEKECVYVIGEGGI 349
>gi|13541288|ref|NP_110976.1| DNA repair and recombination protein RadA [Thermoplasma volcanium
GSS1]
gi|20139594|sp|Q97BJ9.1|RADA_THEVO RecName: Full=DNA repair and recombination protein RadA
gi|14324671|dbj|BAB59598.1| cell cycle progression protein DMC1 [Thermoplasma volcanium GSS1]
Length = 323
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 122/289 (42%), Gaps = 47/289 (16%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R + L T K LD L GG+ +TE G G+GKTQ +L+
Sbjct: 74 FETGEEILERRKTIQKL----TTGSKNLDDLLGGGLETQAITEFFGEFGSGKTQIMHQLA 129
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
+ +P GG D V+ ID E+TF R+I+M SKG+ E RI V +
Sbjct: 130 VNCTMPKEKGGFDSDVMMIDTENTFRPERIIQMAK--------SKGLDPDETLKRIHVAR 181
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLIT 239
+ EK + + + ++LL++DS+ A + R A Q L+ H+ +
Sbjct: 182 AYNSHHQILLAEKAQETAKEFNIRLLIVDSLTAHFRSEYVGRGSLAERQQLLNKHMHDLL 241
Query: 240 SLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHW-A 296
I VTNQV RP ++ +A +G +
Sbjct: 242 RFGTIYNAVIAVTNQVSARPDV-----------------------FFGDPMAPIGGNIVG 278
Query: 297 HAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGT 344
H T R+ L ++K G+R + SP P I+ G++ DGT
Sbjct: 279 HTATFRVYLRKSKGGKRIARLIDSPYLPEGETVIQISEEGVN----DGT 323
>gi|332158291|ref|YP_004423570.1| DNA repair and recombination protein RadB [Pyrococcus sp. NA2]
gi|331033754|gb|AEC51566.1| DNA repair and recombination protein RadB [Pyrococcus sp. NA2]
Length = 224
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 29/204 (14%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T ++GLD L GGV GV+ ++ GP TGKT F +++ LL +G + Y+D
Sbjct: 4 LTTGVRGLDELLGGGVAKGVILQVYGPFATGKTTFAMQVGLLN---------EGKIAYVD 54
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQ 202
E F+ R+ +M ++G+ E A + ++ +P L+E + K+K +++
Sbjct: 55 TEGGFSPERLAQMA--------EARGIDPEKALSKFIIFEPMDLNEQRRVISKLK-TIVN 105
Query: 203 NQVKLLVIDSMEALVPGVHEQRAPGQHP---LSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ L+VIDS+ A RA G L+ + ++ LA + ++V NQV S
Sbjct: 106 DKFSLVVIDSLTA------HYRAEGSKDYGELAKQLQVLQWLARRKNVAVIVVNQVYFDS 159
Query: 260 HDESCLYPFQVQKMDRILKDRTRY 283
+ S L P + KD R+
Sbjct: 160 NSNS-LRPIAEHTLGYRTKDILRF 182
>gi|429852332|gb|ELA27473.1| DNA repair protein rad51 [Colletotrichum gloeosporioides Nara gc5]
Length = 350
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 130/292 (44%), Gaps = 36/292 (12%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + ++R +E + + T K LD L GG+ G VTEL G
Sbjct: 78 LAEASKLVPMGFTTATEMHQRR--SELI--SITTGSKQLDTLLAGGIETGSVTELFGEFR 133
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + A+ F G++
Sbjct: 134 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAV-ANRF-------GLSG 185
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP----GVHEQRAPG 227
+E+ + + + + L++ + + + LL++DS AL G E +
Sbjct: 186 EEVLDNVAYARAYNSDHQLQLLQQASAMMCETRFSLLIVDSATALYRTDFLGRGELSSRQ 245
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSH 286
H L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 246 TH-LAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK-------------- 290
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T R+ L G+ R + SP P F IN GI
Sbjct: 291 --PIGGNIIAHASTTRISLRKGRGETRVAKIYDSPCLPESDCLFAINEDGIG 340
>gi|7509776|pir||T26822 hypothetical protein Y43C5A.6 - Caenorhabditis elegans
Length = 391
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 27/256 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGKTQ C L++L LP GG +G +YID +TF
Sbjct: 159 LDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRP 218
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+I + + H + I V + + + + + +++ ++++
Sbjct: 219 ERIIAIAQRYNMDSAH-------VLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIV 271
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
D A + R A Q LS + + LA+ + +++TNQV Q + ++
Sbjct: 272 DCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQ 331
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLA 326
+K + G AH T RL L G+ R + +SP P
Sbjct: 332 ADAKK----------------PIGGHIIAHMSTTRLYLRKGKGENRVAKMVQSPNLPEAE 375
Query: 327 FSFTINPSGISLLTDD 342
+++I GI +D
Sbjct: 376 ATYSITNHGIEDARED 391
>gi|73669826|ref|YP_305841.1| DNA repair and recombination protein RadA [Methanosarcina barkeri
str. Fusaro]
gi|121695787|sp|Q46A31.1|RADA_METBF RecName: Full=DNA repair and recombination protein RadA
gi|72396988|gb|AAZ71261.1| DNA repair protein [Methanosarcina barkeri str. Fusaro]
Length = 325
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 122/288 (42%), Gaps = 44/288 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T +++E+R G L T D + GG+ +TEL G G+GKTQ + +
Sbjct: 66 FETGDIVLERRKMV----GKLTTGCMEFDEMMGGGIETQAITELYGEFGSGKTQLAHQFA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM--------GASSFPEIF-HSKGMAQEM 174
+ + +GGL+G VI ID E+TF R+ +M G PE F + +A+
Sbjct: 122 VNVQMDREHGGLNGSVIIIDTENTFRPERIAQMVKGLSEKYGMELDPEEFLQNIHVARAY 181
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L S ++ L + + V+LL++DS+ A + R A Q L
Sbjct: 182 NSNHQILLVDSATDLANELRE-----MGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKL 236
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAV 290
+ H+ + + +VVTNQV + K D D TR H+V
Sbjct: 237 NKHMHGLLRFGDLFNASVVVTNQV--------------MAKPDAFFGDPTRPVGGHVV-- 280
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
H T RL L ++K +R + + SP P + +G++
Sbjct: 281 -----GHTATFRLYLRKSKGDKRIIRLVDSPNLPEGEAVIAVTTAGLT 323
>gi|388493808|gb|AFK34970.1| unknown [Medicago truncatula]
Length = 269
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 115/278 (41%), Gaps = 45/278 (16%)
Query: 78 EHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDG 137
E + T LD L GG+ VTE+ G G GKTQ ++L++ +P YGGL G
Sbjct: 5 ERFSSLITTSCLDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAVNVQIPLDYGGLGG 64
Query: 138 GVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILVLQPTSLSE--- 188
IYID E +F R++++ S + FH A + + P S+ E
Sbjct: 65 KAIYIDTEGSFMVERVLQIAEACIEDMSEYSHHFHKDNQAFGVK-----MHPNSILENIF 119
Query: 189 ------FTESLEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLI 238
+TE + + K VK+++IDS+ + A L +
Sbjct: 120 YFRVCSYTEQIALVNYLDKFVTEHKDVKIIIIDSVTFHFRQDFDDMALRTRLLGEMSLKL 179
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
LA+ + +V+ NQV + H ES FQ + LG W+H+
Sbjct: 180 MKLAKNLSLAVVMLNQVTTK-HIES---SFQ-----------------LTLALGDSWSHS 218
Query: 299 VTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
T R++L +R ++KSP+ + +++ GI
Sbjct: 219 CTNRIILYWNGDERHAYIDKSPSLKSASAPYSVTSRGI 256
>gi|384494865|gb|EIE85356.1| DNA repair protein RAD51 [Rhizopus delemar RA 99-880]
Length = 333
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 111/258 (43%), Gaps = 27/258 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C LS+ A LP GG G ++ID
Sbjct: 95 ITTGSKELDRLLGGGIETGSITEIFGEFRTGKSQLCHMLSVTAQLPLDMGGAQGKCLFID 154
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E+TF R++ S + + G Q+ I + + T L + + +
Sbjct: 155 TENTFRPNRIL-----SIAQRYSLDG--QDTLDNIAYARAYNTDHQTTLLIQAAAMMAET 207
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ +L++DS AL + R A Q L+ + + LA+ + +V+TNQV Q
Sbjct: 208 RFAVLIVDSAMALYRTDYAGRGELAARQIHLAQFLRQLQRLADEFGVAVVITNQVVAQVD 267
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKS 319
+ ++ +K G AHA RL L+ G+ R V S
Sbjct: 268 GGASMFNPDPKK----------------PAGGNIIAHASCTRLYLKKGRGETRICKVYDS 311
Query: 320 PTSPPLAFSFTINPSGIS 337
P+ P F I+ GI+
Sbjct: 312 PSLPENECVFAIHEEGIT 329
>gi|297695960|ref|XP_002825186.1| PREDICTED: DNA repair protein XRCC3 [Pongo abelii]
Length = 346
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 148/346 (42%), Gaps = 39/346 (11%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 10 PRIIAAIKKAK-LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALQL 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+Q+ L LDA L GG+P +TEL G + GKTQ L+L L P
Sbjct: 69 HQQKERFPAQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPR 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILVLQPT 184
+GGL+ G +YI E F +R+ ++ A + P K +I +
Sbjct: 129 QHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQK---LRFGSQIFIEHVA 185
Query: 185 SLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITSLA 242
+ E + +K+ V L + +L+VIDS+ A P E + P + + SL +L
Sbjct: 186 DVDTLLECVNKKVPVLLSRGMARLVVIDSVAA--PFRCEFDSQASAPRARRLQSLGAALR 243
Query: 243 EFS---RIPIVVTNQVRPQSHDESCLY-PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
E S + P++ NQV ++ + P + + LG WA+
Sbjct: 244 ELSSAFQSPVLCINQVTEAVEEQGAAHGPLGF------------WDERVSPALGITWANQ 291
Query: 299 VTIRLVL------EAKSG--QRFMNVEKSPTSPPLAFSFTINPSGI 336
+ +RL+ EA G R + V +P P + S+TI+ G+
Sbjct: 292 LLVRLLADRLREEEAALGCPARTLRVLSAPHLAPSSCSYTISAEGV 337
>gi|194691108|gb|ACF79638.1| unknown [Zea mays]
gi|195620070|gb|ACG31865.1| DNA repair protein RAD51 [Zea mays]
gi|414887274|tpg|DAA63288.1| TPA: DNA repair protein RAD51-like protein A [Zea mays]
Length = 340
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 131/317 (41%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++ + S+IV F +A L QR + T + LD L
Sbjct: 60 DLLQIKGISEAKADKIIEAASKIVPLGFTSASQLHAQRLEIIQV----TTGSRELDKILE 115
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 116 GGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 175
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L+V
Sbjct: 176 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MIETRFALMV 221
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H + SL EF + +V+TNQV Q D S +
Sbjct: 222 VDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFG-VAVVITNQVVAQV-DGSAM 279
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPP 324
+ + G AHA T RL L G +R V SP
Sbjct: 280 FA----------------GPQFKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAE 323
Query: 325 LAFSFTINPSGISLLTD 341
F + GI+ + D
Sbjct: 324 AEARFQLASEGIADVKD 340
>gi|255541250|ref|XP_002511689.1| DNA repair and recombination protein radA, putative [Ricinus
communis]
gi|223548869|gb|EEF50358.1| DNA repair and recombination protein radA, putative [Ricinus
communis]
Length = 346
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 119/268 (44%), Gaps = 35/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T LD L GG+ VTE+ G G GKTQ ++L++ +P + GGL G +YI
Sbjct: 87 RITTSCADLDNILGGGITCKEVTEIGGLPGIGKTQLGIQLAVNVQIPPYCGGLGGKAVYI 146
Query: 143 DVESTFTSRRMIEMGASSFPEIF-HSKGMAQEMAGRILVLQPTSLSE---------FTES 192
D E +F R++++ +S ++ +S+ + +++ + Q + E +TE
Sbjct: 147 DTEGSFMVERVLQVAEASVEDMLEYSRFLRRDLQTCQVATQSKDILENIYYFRVCSYTEQ 206
Query: 193 LEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ + K VK+++IDS+ + A LS + +A+ +
Sbjct: 207 VALVNYLEKFISEHRDVKVVIIDSITFHFRQDFDDLALRTRVLSGMALKLMKIAKSFSLA 266
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + H E FQ+ LG W+H+ T R++L
Sbjct: 267 VVLLNQVTTK-HTEG---SFQLG-----------------LALGESWSHSCTNRIILYWN 305
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
S +R+ ++KSP+ +++ GI
Sbjct: 306 SNERYAYIDKSPSLKSATAPYSVTRGGI 333
>gi|226494109|ref|NP_001150457.1| DNA repair protein RAD51 [Zea mays]
gi|195639406|gb|ACG39171.1| DNA repair protein RAD51 [Zea mays]
gi|224030343|gb|ACN34247.1| unknown [Zea mays]
gi|414881531|tpg|DAA58662.1| TPA: DNA repair protein RAD51 [Zea mays]
Length = 294
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 114/268 (42%), Gaps = 35/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T L+ L GG+ VTE+ G G GKTQ ++L++ +P GGL G +YI
Sbjct: 34 HITTGSGDLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVECGGLGGKAVYI 93
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV-LQPT---------SLSEFTES 192
D E +F R+ ++ +I + E + + LQP + +TE
Sbjct: 94 DTEGSFMVERVYQIAEGCIRDILEHFPHSHEKSSSVQKQLQPERFLADIYYFRICSYTEQ 153
Query: 193 LEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ I K V++++IDS+ E A LS + +A+ +
Sbjct: 154 IAVINYMEKFLREHKDVRIVIIDSVTFHFRQDFEDLALRTRVLSGLSLKLMKIAKTYNLA 213
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + + S FQ + LG W+H+ T RL+L
Sbjct: 214 VVLLNQVTTKFTEGS----FQ-----------------LTLALGDSWSHSCTNRLILHWN 252
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R+ +++KSP+ P + + + GI
Sbjct: 253 GNERYAHLDKSPSLPVASAPYAVTGKGI 280
>gi|321265185|ref|XP_003197309.1| meiotic recombination-related protein [Cryptococcus gattii WM276]
gi|317463788|gb|ADV25522.1| Meiotic recombination-related protein, putative [Cryptococcus
gattii WM276]
Length = 308
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 117/280 (41%), Gaps = 34/280 (12%)
Query: 62 PPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLK 121
P F T + ++RA ++ T K +DA L GG+ +TE+ G TGKTQ C
Sbjct: 52 PAFLTGTEIADRRANVVYI----TTGSKSVDAMLGGGIATQSITEVFGEYRTGKTQLCHT 107
Query: 122 LSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILV 180
L + LP GG G V YID E TF R+ + A F G+ MA +L
Sbjct: 108 LCVSTQLPEDQGGGSGKVAYIDTEGTFRPDRVRAV-ADRF-------GVDSNMALDNVLC 159
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQV-KLLVIDSMEALVPGVHEQR---APGQHPLSWHIS 236
+ S + L + + ++ + KLL++DS+ L + R + Q L+ ++
Sbjct: 160 ARAWSSEHQCDLLVDLAIRFVEERAYKLLIVDSIMNLFRQDYSGRGELSERQQKLNQFLA 219
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+ LAE I +V+TNQV+ + K V G A
Sbjct: 220 RLQKLAEEFNIAVVLTNQVQADPGAAAMFAAASSAK----------------PVGGHILA 263
Query: 297 HAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSG 335
HA R+ L G +R ++ SP P ++T+ G
Sbjct: 264 HASATRIALRKGRGDERIAKLQDSPDMPEGEATYTLRTGG 303
>gi|453232188|ref|NP_001263771.1| Protein RAD-51, isoform c [Caenorhabditis elegans]
gi|442535369|emb|CCQ25700.1| Protein RAD-51, isoform c [Caenorhabditis elegans]
Length = 362
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 27/256 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGKTQ C L++L LP GG +G +YID +TF
Sbjct: 130 LDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRP 189
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+I + + H + I V + + + + + +++ ++++
Sbjct: 190 ERIIAIAQRYNMDSAH-------VLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIV 242
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
D A + R A Q LS + + LA+ + +++TNQV Q + ++
Sbjct: 243 DCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQ 302
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLA 326
+K + G AH T RL L G+ R + +SP P
Sbjct: 303 ADAKK----------------PIGGHIIAHMSTTRLYLRKGKGENRVAKMVQSPNLPEAE 346
Query: 327 FSFTINPSGISLLTDD 342
+++I GI +D
Sbjct: 347 ATYSITNHGIEDARED 362
>gi|307595014|ref|YP_003901331.1| Rad51 domain-containing protein [Vulcanisaeta distributa DSM 14429]
gi|307550215|gb|ADN50280.1| Rad51 domain protein [Vulcanisaeta distributa DSM 14429]
Length = 318
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 117/270 (43%), Gaps = 40/270 (14%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
L T ++ +D L GG+ + E G GTGKTQ C +LS+ L GG+ G +Y+
Sbjct: 84 RLRTNVRAIDDLLQGGLEPKAIYEFAGEFGTGKTQLCHQLSVTVQLSQDKGGVGGAAVYL 143
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL- 201
D E F+ R++ + A F E I V++ + ++ + ++ V L+
Sbjct: 144 DTEEAFSPNRIVNI-AQRFDL------DPNEALDNIYVIKVINAADLEDRIKFDVVKLVE 196
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
Q KL+V+DS+ AL + R A Q L++ + + +A+ + +V+TNQV
Sbjct: 197 QANAKLIVVDSIIALYRAEFKGRERLAERQQRLNYILDWLMRIAKVYNVYVVLTNQV--- 253
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVE 317
P ++ R G AHAVT RL L ++K + M V
Sbjct: 254 -----LDVPMGYIEVKR-------------PAGGNVLAHAVTHRLFLKKSKEDIKVMEVL 295
Query: 318 KSPTSPPLAFSFTINPSGISLLTDDGTEMV 347
SP P S + +TD G E V
Sbjct: 296 DSPRLP-------FKASAMFRITDKGVEDV 318
>gi|389632217|ref|XP_003713761.1| DNA repair protein rhp51 [Magnaporthe oryzae 70-15]
gi|312283561|dbj|BAJ34646.1| DNA recombinational repair protein [Magnaporthe oryzae]
gi|351646094|gb|EHA53954.1| DNA repair protein rhp51 [Magnaporthe oryzae 70-15]
gi|440473931|gb|ELQ42700.1| hypothetical protein OOU_Y34scaffold00194g12 [Magnaporthe oryzae
Y34]
gi|440489122|gb|ELQ68800.1| hypothetical protein OOW_P131scaffold00217g12 [Magnaporthe oryzae
P131]
Length = 353
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 130/292 (44%), Gaps = 36/292 (12%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + ++R +E + + T K LD L GG+ G VTEL G
Sbjct: 79 LAEASKLVPMGFTTATEMHQRR--SELI--SITTGSKNLDTMLGGGIETGSVTELFGEFR 134
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + A+ F G++
Sbjct: 135 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAV-ANRF-------GLSG 186
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP----GVHEQRAPG 227
+E+ + + + + L + + + + LL++DS AL G E +
Sbjct: 187 EEVLDNVAYARAYNSDHQLQLLNQASAMMCETRFSLLIVDSATALYRTDFLGRGELSSRQ 246
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSH 286
H L+ + + LA+ I +V++NQV Q S ++ +K
Sbjct: 247 TH-LAKFMRQLQRLADEFGIAVVISNQVVAQVDGGPSAMFNPDPKK-------------- 291
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L+ G+ R + SP P F IN GI
Sbjct: 292 --PIGGNIIAHASTTRLSLKKGRGETRIAKIYDSPCLPESDCLFAINEDGIG 341
>gi|71997301|ref|NP_001023466.1| Protein RAD-51, isoform b [Caenorhabditis elegans]
gi|2913897|dbj|BAA24982.1| RecA/Rad51/Dmc1-like protein [Caenorhabditis elegans]
gi|3786402|gb|AAD10194.1| RAD51 short isoform [Caenorhabditis elegans]
gi|35210311|emb|CAE47473.1| Protein RAD-51, isoform b [Caenorhabditis elegans]
Length = 357
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 27/256 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGKTQ C L++L LP GG +G +YID +TF
Sbjct: 125 LDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRP 184
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+I + + H + I V + + + + + +++ ++++
Sbjct: 185 ERIIAIAQRYNMDSAH-------VLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIV 237
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
D A + R A Q LS + + LA+ + +++TNQV Q + ++
Sbjct: 238 DCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQ 297
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLA 326
+K + G AH T RL L G+ R + +SP P
Sbjct: 298 ADAKK----------------PIGGHIIAHMSTTRLYLRKGKGENRVAKMVQSPNLPEAE 341
Query: 327 FSFTINPSGISLLTDD 342
+++I GI +D
Sbjct: 342 ATYSITNHGIEDARED 357
>gi|218188518|gb|EEC70945.1| hypothetical protein OsI_02540 [Oryza sativa Indica Group]
Length = 349
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 116/268 (43%), Gaps = 35/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T L+ L GG+ VTE+ G G GKTQ ++L++ +P YGGL G +YI
Sbjct: 89 HINTGSADLNNILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVEYGGLGGKAVYI 148
Query: 143 DVESTFTSRRMIEMGASSFPEIF------HSKGMA-------QEMAGRILVLQPTSLSEF 189
D E +F R+ ++ +I H K A + I + S +E
Sbjct: 149 DTEGSFMVERVYQIAEGCISDILEYFPHCHDKAPAGQEKLKPESFLADIYYFRICSYTEQ 208
Query: 190 TESLEKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ ++ L +++ V++++IDS+ + A LS + L++ +
Sbjct: 209 IAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFDDMALRTRVLSGLSLKLMKLSKAYNLA 268
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + + S FQ + LG W+H+ T RL+L
Sbjct: 269 VVLLNQVTTKFTEGS----FQ-----------------LTLALGDSWSHSCTNRLILYWN 307
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R+ ++KSP+ P + + + G+
Sbjct: 308 GNERYGYLDKSPSLPVASAPYAVTIKGV 335
>gi|432328460|ref|YP_007246604.1| DNA repair and recombination protein RadB [Aciduliprofundum sp.
MAR08-339]
gi|432135169|gb|AGB04438.1| DNA repair and recombination protein RadB [Aciduliprofundum sp.
MAR08-339]
Length = 215
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 24/166 (14%)
Query: 95 LCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMI 154
L GG G +TE+ G AG+GKT CL ++ A +Y VIYID E R
Sbjct: 2 LNGGFERGCITEIYGEAGSGKTNICLSTAINTARQGYY------VIYIDTEGVSMER--- 52
Query: 155 EMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK-IKVSLLQNQVKLLVIDSM 213
F G +E++ +IL + S+ E +E+ I + +N + LL++DSM
Sbjct: 53 ----------FEQLGGDEELSKKILFYKVYKFSQQGEIIERAINLVEKRNDIALLIVDSM 102
Query: 214 EALV---PGVHEQ-RAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
GV E + + L+W +S++ S+A + +++TNQV
Sbjct: 103 TEFYRAERGVEEDLSSRKRSSLAWQLSMLNSVARRKNLAVLITNQV 148
>gi|154314604|ref|XP_001556626.1| hypothetical protein BC1G_04011 [Botryotinia fuckeliana B05.10]
gi|347831947|emb|CCD47644.1| similar to DNA repair protein RAD51 homolog 1 [Botryotinia
fuckeliana]
Length = 349
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 127/290 (43%), Gaps = 34/290 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
L S++V F TA + ++R +E + + T K LD L GGV G VTE+ G
Sbjct: 77 LTEASKLVPMGFTTATEMHQRR--SELI--SITTGSKQLDTLLAGGVETGSVTEIFGEFR 132
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + + G++
Sbjct: 133 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLL--------AVANRYGLSG 184
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQ 228
+E+ + + + + L + + + + LL++DS AL R + Q
Sbjct: 185 EEVLDNVAYARAYNSDHQLQLLNQAAQMMCETRFSLLIVDSATALYRTDFTGRGELSSRQ 244
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHI 287
L+ + ++ LA+ I +V+TNQV Q S ++ +K
Sbjct: 245 MHLAKFMRMLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK--------------- 289
Query: 288 VAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AHA T RL L+ G+ R + SP P F IN GI
Sbjct: 290 -PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEDGI 338
>gi|341903203|gb|EGT59138.1| hypothetical protein CAEBREN_12768 [Caenorhabditis brenneri]
Length = 357
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 27/256 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGKTQ C L++L LP GG +G +YID +TF
Sbjct: 125 LDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRP 184
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+I + + H + I V + + + + + +++ ++++
Sbjct: 185 ERIIAIAQRYNMDSAH-------VLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIV 237
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
D A + R A Q LS + + LA+ + +++TNQV Q + ++
Sbjct: 238 DCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQ 297
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLA 326
+K + G AH T RL L G+ R + +SP P
Sbjct: 298 ADAKK----------------PIGGHIIAHMSTTRLYLRKGKGENRVAKMVQSPNLPEAE 341
Query: 327 FSFTINPSGISLLTDD 342
+++I GI +D
Sbjct: 342 ATYSITNHGIEDARED 357
>gi|17944958|gb|AAL48542.1| RE02671p [Drosophila melanogaster]
Length = 341
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 106/258 (41%), Gaps = 39/258 (15%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKT+ L+LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTELLLQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
+IDS+ A+ ++ +H +L+ S A+ +V NQV
Sbjct: 211 IIDSVAAIFRLYNDYLERARHMRRLADALL-SYADKYNCAVVCVNQV------------- 256
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-----EAKSGQRFMNVEK----- 318
TR + LG WAH RL + + + G + + V K
Sbjct: 257 -----------ATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILY 305
Query: 319 SPTSPPLAFSFTINPSGI 336
SP +P F I G+
Sbjct: 306 SPETPNDFAEFLITAEGV 323
>gi|429329332|gb|AFZ81091.1| DNA repair protein rad51, putative [Babesia equi]
Length = 343
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 30/256 (11%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE++G TGK+Q C LS+ LP G +G ++ID E TF
Sbjct: 112 LDVLLKGGIETGSITEIIGEFKTGKSQLCHTLSVTCQLPVEQSGGEGKCLWIDTEGTFRP 171
Query: 151 RRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
R++ + A F G++ + I + + E L + + Q + LL+
Sbjct: 172 ERVVSI-AKRF-------GLSPSDCLDNIAYAKAYNCDHQLELLVEATAMMSQARFALLI 223
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L + + +A+ + +V+TNQV
Sbjct: 224 VDSATALYRSDYSGRGELSTRQMHLCKFLRALQRIADTFGVAVVITNQV----------- 272
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
V ++D + + + + + + G AHA RL L G+ R + SP P
Sbjct: 273 ---VSRVDAVA---SFFGNDKIPIGGNIMAHASQTRLFLRQSKGESRICKIYDSPVLPEG 326
Query: 326 AFSFTINPSGISLLTD 341
F+I GIS D
Sbjct: 327 EAVFSITDGGISDYND 342
>gi|225559662|gb|EEH07944.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|325089671|gb|EGC42981.1| uvsC [Ajellomyces capsulatus H88]
Length = 348
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 123/290 (42%), Gaps = 32/290 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S+IV F TA + +R + T K LD L GG+ G +TE+ G
Sbjct: 76 LAEASKIVPMGFTTATEMHARRNDLICI----TTGSKQLDTLLAGGIETGSITEIFGEFR 131
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ 172
TGK+Q C L++ LP GG +G +YID E TF R++ + A + +
Sbjct: 132 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPTRLLAV-AQRYGLV------GD 184
Query: 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQH 229
E+ I + + + L + + + + LL++DS AL R + Q+
Sbjct: 185 EVLDNIAYARAYNSDHQLQLLNQASQMMCETRFSLLIVDSATALYRTDFSGRGELSSRQN 244
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHIV 288
L+ + + +LA+ I +V+TNQV Q S ++ +K
Sbjct: 245 HLAKFMRKLRTLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK---------------- 288
Query: 289 AVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L+ G+ R + SP P F IN GI
Sbjct: 289 PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEGGIG 338
>gi|341903964|gb|EGT59899.1| CBN-RAD-51 protein [Caenorhabditis brenneri]
Length = 357
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 27/256 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGKTQ C L++L LP GG +G +YID +TF
Sbjct: 125 LDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRP 184
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+I + + H + I V + + + + + +++ ++++
Sbjct: 185 ERIIAIAQRYNMDSAH-------VLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIV 237
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
D A + R A Q LS + + LA+ + +++TNQV Q + ++
Sbjct: 238 DCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQ 297
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLA 326
+K + G AH T RL L G+ R + +SP P
Sbjct: 298 ADAKK----------------PIGGHIIAHMSTTRLYLRKGKGENRVAKMVQSPNLPEAE 341
Query: 327 FSFTINPSGISLLTDD 342
+++I GI +D
Sbjct: 342 ATYSITNHGIEDARED 357
>gi|209946400|gb|ACI97431.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 105/258 (40%), Gaps = 39/258 (15%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKTQ L+LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
+IDS+ A+ ++ +H +L+ S A+ +V NQV
Sbjct: 211 IIDSVAAIFRLYNDYLERARHMRRLADALL-SYADKYNCAVVCVNQV------------- 256
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-----EAKSGQRFMNVEK----- 318
TR + LG WAH RL + + + G + + V K
Sbjct: 257 -----------ATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILY 305
Query: 319 SPTSPPLAFSFTINPSGI 336
SP +P I G+
Sbjct: 306 SPETPNDXXEXXITADGV 323
>gi|350537569|ref|NP_001233788.1| DNA repair protein RAD51 homolog [Solanum lycopersicum]
gi|2500107|sp|Q40134.1|RAD51_SOLLC RecName: Full=DNA repair protein RAD51 homolog
gi|1143810|gb|AAC23700.1| LeRAD51 [Solanum lycopersicum]
Length = 342
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 136/317 (42%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+++ + ++V + S++V F +A L QR + + K LD L
Sbjct: 62 ELLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRLEIIQI----TSGSKELDKILE 117
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 118 GGIETGSITEIYGEFRCGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQI 177
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G + +++ + R+L L+ S+ +++ + L++
Sbjct: 178 ADRYGLNGPDVLENVAYARAYNTDHQSRLL-LEAASM-------------MVETRFALMI 223
Query: 210 IDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H L+ + + LA+ + +V+TNQV Q D S +
Sbjct: 224 VDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVITNQVVAQV-DGSAV 281
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPP 324
+ I + G AHA T RL L + ++ +R V SP
Sbjct: 282 FAG----------------PQIKPIGGNIMAHASTTRLALRKGRAEERICKVVSSPCLAE 325
Query: 325 LAFSFTINPSGISLLTD 341
F I+ G++ + D
Sbjct: 326 AEARFQISVEGVTDVKD 342
>gi|156053229|ref|XP_001592541.1| DNA repair protein rhp51 [Sclerotinia sclerotiorum 1980]
gi|154704560|gb|EDO04299.1| DNA repair protein rhp51 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 349
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 127/290 (43%), Gaps = 34/290 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
L S++V F TA + ++R +E + + T K LD L GGV G VTE+ G
Sbjct: 77 LTEASKLVPMGFTTATEMHQRR--SELI--SITTGSKQLDTLLAGGVETGSVTEIFGEFR 132
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + + G++
Sbjct: 133 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLL--------AVANRYGLSG 184
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQ 228
+E+ + + + + L + + + + LL++DS AL R + Q
Sbjct: 185 EEVLDNVAYARAYNSDHQLQLLNQAAQMMCETRFSLLIVDSATALYRTDFTGRGELSSRQ 244
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHI 287
L+ + ++ LA+ I +V+TNQV Q S ++ +K
Sbjct: 245 MHLAKFMRMLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK--------------- 289
Query: 288 VAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AHA T RL L+ G+ R + SP P F IN GI
Sbjct: 290 -PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEDGI 338
>gi|325969248|ref|YP_004245440.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
768-28]
gi|323708451|gb|ADY01938.1| DNA repair and recombination protein RadA [Vulcanisaeta moutnovskia
768-28]
Length = 318
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 115/260 (44%), Gaps = 34/260 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
L T ++ +D L GG+ + E G GTGKTQ C +LS+ L GG+ G +Y+
Sbjct: 84 RLRTNVRAIDELLQGGLEPKAIYEFAGEFGTGKTQLCHQLSVTVQLSQDKGGVGGAAVYL 143
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL- 201
D E F+ R+I + A F E I V++ + ++ + ++ V L+
Sbjct: 144 DTEEAFSPGRIINI-AQRFDL------DPNETLDNIYVIKVINAADLEDRIKFDVVKLVE 196
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
Q +L+V+DS+ AL + R A Q L++ + + +A+ + +V+TNQV
Sbjct: 197 QANARLIVVDSIIALYRAEFKGRERLAERQQRLNYILDWLMRIAKLYNVYVVLTNQV--- 253
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVE 317
P ++ R G AHAVT RL L ++K + M V
Sbjct: 254 -----LDVPMGYIEIKR-------------PAGGNVLAHAVTHRLFLRKSKEDVKVMEVL 295
Query: 318 KSPTSPPLAFS-FTINPSGI 336
SP P A + F I GI
Sbjct: 296 DSPRLPFKASAMFRITDKGI 315
>gi|268552839|ref|XP_002634402.1| C. briggsae CBR-RAD-51 protein [Caenorhabditis briggsae]
Length = 361
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 27/256 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGKTQ C L++L LP GG +G +YID +TF
Sbjct: 129 LDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRP 188
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+I + + H + I V + + + + + +++ ++++
Sbjct: 189 ERIIAIAQRYNMDSAH-------VLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIV 241
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
D A + R A Q LS + + LA+ + +++TNQV Q + ++
Sbjct: 242 DCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQ 301
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLA 326
+K + G AH T RL L G+ R + +SP P
Sbjct: 302 ADAKK----------------PIGGHIIAHMSTTRLYLRKGKGENRVAKMVQSPNLPEAE 345
Query: 327 FSFTINPSGISLLTDD 342
+++I GI +D
Sbjct: 346 ATYSITNHGIEDARED 361
>gi|71997295|ref|NP_001023465.1| Protein RAD-51, isoform a [Caenorhabditis elegans]
gi|15718273|emb|CAB61038.2| Protein RAD-51, isoform a [Caenorhabditis elegans]
Length = 395
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 27/256 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGKTQ C L++L LP GG +G +YID +TF
Sbjct: 163 LDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRP 222
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+I + + H + I V + + + + + +++ ++++
Sbjct: 223 ERIIAIAQRYNMDSAH-------VLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIV 275
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
D A + R A Q LS + + LA+ + +++TNQV Q + ++
Sbjct: 276 DCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQ 335
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLA 326
+K + G AH T RL L G+ R + +SP P
Sbjct: 336 ADAKK----------------PIGGHIIAHMSTTRLYLRKGKGENRVAKMVQSPNLPEAE 379
Query: 327 FSFTINPSGISLLTDD 342
+++I GI +D
Sbjct: 380 ATYSITNHGIEDARED 395
>gi|344273765|ref|XP_003408689.1| PREDICTED: DNA repair protein XRCC3-like [Loxodonta africana]
Length = 341
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 149/341 (43%), Gaps = 34/341 (9%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ +A + A+ + +A++ L L+ +L +L + + R L S + TAL L
Sbjct: 10 PRIVAAVKKAK-LQSAREVLRLSGPDLQRLTGLSGIDARRVLQAASLGLRGSGVFTALQL 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+QRA L LD L GG+P +TEL G + GKTQ L+L L LP
Sbjct: 69 YQQRARFPVQHQRLSLGCPVLDRLLRGGLPLDGITELAGCSSAGKTQLALQLCLAVQLPQ 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEM------AGRILVLQPT 184
+GGL+ G +YI E F RR+ ++ + P + G+ E+ +I +
Sbjct: 129 QHGGLEAGAVYICTEDVFPDRRLQQL-ITHQPRL--RAGVPGELLSKVRFGDQIFIEHAA 185
Query: 185 SLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITSLA 242
+ E + ++ + L + +L+V+DS+ A P E + + H+ +L +L
Sbjct: 186 DVDTLLECVSRRVPILLARGMARLVVLDSVAA--PFRCEFDSQALTARARHLQTLGAALR 243
Query: 243 EFS---RIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAV 299
S + P++ NQV +V + R + + LG W++ +
Sbjct: 244 HLSCSFQSPVLCINQV------------TEVAEEQRPAGPQGFSDERVSPALGTAWSNQL 291
Query: 300 TIRLVLEAKSGQ----RFMNVEKSPTSPPLAFSFTINPSGI 336
+RL E G+ R + V +P PP + +TI G+
Sbjct: 292 LMRLTAERARGKEEPARTLRVVFAPHLPPTSCLYTIGAEGV 332
>gi|326911974|ref|XP_003202330.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Meleagris gallopavo]
Length = 342
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L +V++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 67 LSEVKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 119
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 120 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGPNGYTGGKIIFIDTENTFRPDRLRDI-ADR 178
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 179 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 232
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 233 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKK- 288
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
V G AHA T R+ L G+ R + SP P +F I P
Sbjct: 289 -------------PVGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITPG 335
Query: 335 GIS 337
GI
Sbjct: 336 GIG 338
>gi|170591324|ref|XP_001900420.1| Meiotic recombination protein DMC1/LIM15 homolog [Brugia malayi]
gi|158592032|gb|EDP30634.1| Meiotic recombination protein DMC1/LIM15 homolog, putative [Brugia
malayi]
Length = 328
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 134/311 (43%), Gaps = 44/311 (14%)
Query: 40 KLLDVE-LSEVRSALALVSEIVCP----PFQTALLLMEQRAATEHLGGHLPTRLKGLDAA 94
+L DV+ LSE + + + E+ C F TAL + E+R L + T + LD
Sbjct: 45 RLCDVKGLSEAK--VDKIKEVACKLLNNGFITALEVTERR----KLCYRISTGSRDLDKL 98
Query: 95 LCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGG-VIYIDVESTFTSRRM 153
L GG+ +TE+ G TGKTQ L ++ + + GG VIYID E+TF R+
Sbjct: 99 LGGGIESQAITEVFGEFRTGKTQLSHTLCVMCQIASETSNFKGGKVIYIDTENTFRPDRL 158
Query: 154 IEMGASSFPEIFHSKGMAQE-MAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVI 210
++ E F M QE M IL + + E L+ + + KLL++
Sbjct: 159 RQIN-----ERFK---MDQEAMLDNILYARAYTSDHQMELLDFVAAKFHEELGIFKLLIV 210
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
DS+ AL + R A Q L+ +S + +AE + + +TNQ+ + D
Sbjct: 211 DSIMALFRVDYSGRGELAERQQKLAQMLSRLQKIAEEYNVAVFITNQM---TADPGAGMT 267
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLA 326
FQ V G AHA T R++L+ G+ R + SP P
Sbjct: 268 FQADPKK--------------PVGGHILAHASTTRIMLKKGRGETRIAKIYDSPDLPENE 313
Query: 327 FSFTINPSGIS 337
+F I GI+
Sbjct: 314 ATFAIATIGIT 324
>gi|424813601|ref|ZP_18238789.1| DNA repair and recombination protein RadA [Candidatus Nanosalina
sp. J07AB43]
gi|339758547|gb|EGQ43802.1| DNA repair and recombination protein RadA [Candidatus Nanosalina
sp. J07AB43]
Length = 316
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 104/253 (41%), Gaps = 37/253 (14%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
D L GGV +TE+ G G+ KTQ +L+ LP GGL G +Y+D E TF
Sbjct: 89 FDEILGGGVETQAITEVYGEYGSAKTQISHQLATNVQLPRDEGGLGKGAVYVDTEDTFIP 148
Query: 151 RR---MIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKL 207
+R M E E+ +A+ +L E ++ N + L
Sbjct: 149 QRIEQMAEANGQDPEEVLDDIHVARAFNSDHQMLLADEAQEICQN----------NDIGL 198
Query: 208 LVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESC 264
+V+DS+ A + R A Q L+ H++ + LA I ++VTNQV
Sbjct: 199 VVVDSLTAQFRSDYVGRGELAQRQQKLNKHMNTLLRLANAHNIAVLVTNQV--------- 249
Query: 265 LYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSP 323
+ D++ D T+ A+ G AH +RL L ++K +R + SP P
Sbjct: 250 -----MSNPDQMFGDPTK------AIGGHIVAHNSAVRLYLRKSKKDKRIARLVDSPYMP 298
Query: 324 PLAFSFTINPSGI 336
F + GI
Sbjct: 299 EGEAVFKVADRGI 311
>gi|386001150|ref|YP_005919449.1| DNA repair and recombination protein RadA [Methanosaeta
harundinacea 6Ac]
gi|357209206|gb|AET63826.1| DNA repair and recombination protein RadA [Methanosaeta
harundinacea 6Ac]
Length = 326
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 120/289 (41%), Gaps = 46/289 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++ME+R L G + T + DA + GG + E+ G G+GKTQ +++
Sbjct: 66 FETGDMVMERR----KLVGKVTTGSETFDALMGGGFETQAIVEVYGEFGSGKTQVAHQVA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE-----------IFHSKGMAQ 172
+ LPA GGL+G VI ID E+TF R+ +M P + +A+
Sbjct: 122 VNVQLPAEEGGLNGSVIIIDTENTFRPERIAQMVEGLPPSGEPEKPREPEEFLRNIHVAR 181
Query: 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQH 229
+L S + E ++K +LL++DS+ A + R A Q
Sbjct: 182 AYNSNHQILLAESALDLAEKMKKSG-----KPARLLIVDSLTAHFRAEYVGRGTLADRQQ 236
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIV 288
L+ H+ + A+ + ++VTNQV + K D D T+ HIV
Sbjct: 237 KLNKHLHTLMRFADLNNAVVLVTNQV--------------MAKPDAFFGDPTKPVGGHIV 282
Query: 289 AVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
H T R+ L G+ R + SP P F + +G+
Sbjct: 283 -------GHTATFRIYLRKSKGEKRIARLIDSPNLPDGEAVFAVTSAGL 324
>gi|363727814|ref|XP_425477.3| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Gallus
gallus]
Length = 342
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L +V++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 67 LSEVKVDKIKEA---ANKLIEPGFLTAFEYSEKRK----MVFHITTGSQEFDKLLGGGIE 119
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 120 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGPKGYTGGKIIFIDTENTFRPDRLRDI-ADR 178
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 179 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 232
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 233 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKK- 288
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
V G AHA T R+ L G+ R + SP P +F I P
Sbjct: 289 -------------PVGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITPG 335
Query: 335 GIS 337
GI
Sbjct: 336 GIG 338
>gi|294944311|ref|XP_002784192.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
ATCC 50983]
gi|239897226|gb|EER15988.1| meiotic recombination protein DMC1, putative [Perkinsus marinus
ATCC 50983]
Length = 335
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 110/265 (41%), Gaps = 32/265 (12%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
L T +D L GG+ +TE G GKTQ C LS++A +P YGG +G V YI
Sbjct: 97 RLSTGSSKVDQLLGGGIESCSITEFYGEFRCGKTQLCHSLSVIAQMPQSYGGANGKVCYI 156
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
D E+TF R+ ++ A +F G+ Q++ I+ + + + L + +
Sbjct: 157 DTENTFRPDRITQI-AQAF-------GVDPQQVLDNIIYARCYNSEHLVQLLLCVAAKMA 208
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+ + LLV+DS+ R A Q LS +S + L+E + +V+TNQV
Sbjct: 209 EEKYALLVVDSIMGPFRVDFTGRGDLAERQQLLSRVMSRLQKLSEEYNLAVVITNQVMA- 267
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH-WAHAVTIRLVLEAKSG-QRFMNV 316
D + F I G H AH T R+ L G QR M +
Sbjct: 268 --DPAAAMSFAANPPKPI---------------GGHVLAHYSTTRIALRKGRGEQRIMKI 310
Query: 317 EKSPTSPPLAFSFTINPSGISLLTD 341
SP P F I GI D
Sbjct: 311 IDSPNLPEGDCVFEICTKGIQDAKD 335
>gi|225454007|ref|XP_002280748.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Vitis vinifera]
gi|296089196|emb|CBI38899.3| unnamed protein product [Vitis vinifera]
Length = 346
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 118/271 (43%), Gaps = 35/271 (12%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T LD L GG+ VTE+ G G GKTQ ++L++ +P +YGGL G IYID
Sbjct: 88 ITTSCVDLDDILGGGIKCKEVTEIGGVPGIGKTQLGIQLAVNVQIPVNYGGLGGKAIYID 147
Query: 144 VESTFTSRRMIEM---------GASSF-PEIFHS---KGMAQEMAGRILVLQPTSLSEFT 190
E +F R +++ G S F + F S K ++ I + S +E
Sbjct: 148 TEGSFMLERSLQIAEACIEDMSGNSDFLQKDFQSCQVKAQPKDFLQNIFYFRVCSYTEQI 207
Query: 191 ESLEKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPI 249
+ + + +++ V +++IDS+ + A LS + LA+ + +
Sbjct: 208 AMINYLDKFISEHKDVNVVIIDSVTFHFRQDFDDLALRTRLLSGMALKLMKLAKKFSLAV 267
Query: 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS 309
V+ NQV + H E FQ + LG W+H+ T R++L
Sbjct: 268 VLLNQVTTK-HTEG---SFQ-----------------LTLALGDSWSHSCTNRVILYWNG 306
Query: 310 GQRFMNVEKSPTSPPLAFSFTINPSGISLLT 340
+R+ ++KSP+ + +++ GI T
Sbjct: 307 DERYAYIDKSPSLRSASAPYSVTGKGIRTAT 337
>gi|115437842|ref|NP_001043394.1| Os01g0578000 [Oryza sativa Japonica Group]
gi|13161340|dbj|BAB32931.1| DNA repair protein radA (radA)-like [Oryza sativa Japonica Group]
gi|20521295|dbj|BAB91810.1| DNA repair protein radA (radA)-like [Oryza sativa Japonica Group]
gi|113532925|dbj|BAF05308.1| Os01g0578000 [Oryza sativa Japonica Group]
gi|215686387|dbj|BAG87648.1| unnamed protein product [Oryza sativa Japonica Group]
gi|343466352|gb|AEM43048.1| RAD51C-1 [Oryza sativa]
Length = 349
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 116/268 (43%), Gaps = 35/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T L+ L GG+ VTE+ G G GKTQ ++L++ +P YGGL G +YI
Sbjct: 89 HINTGSADLNNILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVEYGGLGGKAVYI 148
Query: 143 DVESTFTSRRMIEMGASSFPEIF------HSKGMA-------QEMAGRILVLQPTSLSEF 189
D E +F R+ ++ +I H K A + I + S +E
Sbjct: 149 DTEGSFMVERVYQIAEGCISDILEYFPHCHDKAPAGQEKLKPESFLADIYYFRICSYTEQ 208
Query: 190 TESLEKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ ++ L +++ V++++IDS+ + A LS + L++ +
Sbjct: 209 IAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFDDMALRTRVLSGLSLKLMKLSKAYNLA 268
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + + S FQ + LG W+H+ T RL+L
Sbjct: 269 VVLLNQVTTKFTEGS----FQ-----------------LTLALGDSWSHSCTNRLILYWN 307
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R+ ++KSP+ P + + + G+
Sbjct: 308 GNERYGFLDKSPSLPVASAPYAVTVKGV 335
>gi|197092363|gb|ACH42254.1| RAD51C protein [Triticum aestivum]
Length = 270
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 114/273 (41%), Gaps = 45/273 (16%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T L+ L GG+ VTE+ G G GKTQ ++L++ +P YGGL G IYI
Sbjct: 10 HITTGSGDLNGILGGGIHCKEVTEIGGVPGIGKTQLGIQLAINVQIPVDYGGLGGKAIYI 69
Query: 143 DVESTFTSRRMIEMGASSFPEIF------HSKGMAQEMAGRILVLQPTS---------LS 187
D E +F R+ ++ +I H K + + LQP S +
Sbjct: 70 DTEGSFMVERVYQIAEGCISDIMEYFPCHHDKSSSGQEN-----LQPESFLAGIYYFRIC 124
Query: 188 EFTESLEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAE 243
+TE + I K V++++IDS+ + A LS + L++
Sbjct: 125 SYTEQIAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFDDLALRTRVLSGLSLKLMKLSK 184
Query: 244 FSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL 303
+ +V+ NQV + + S FQ + LG W+H+ RL
Sbjct: 185 SYNLAVVLLNQVTTKFTEGS----FQ-----------------LTLALGDSWSHSCINRL 223
Query: 304 VLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+L K +R ++KSP+ P + + + G+
Sbjct: 224 ILYWKGNERCAYLDKSPSLPVASTPYAVTSKGV 256
>gi|357469749|ref|XP_003605159.1| DNA repair protein RAD51-like protein [Medicago truncatula]
gi|355506214|gb|AES87356.1| DNA repair protein RAD51-like protein [Medicago truncatula]
Length = 347
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 39/286 (13%)
Query: 65 QTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124
QTA ++ + E + T LD L GG+ VTE+ G G GKTQ ++L++
Sbjct: 74 QTAWDMLNE----ERFSSLITTSCLDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAV 129
Query: 125 LAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF-HSKGMAQEMAGRILVLQP 183
+P YGGL G IYID E +F R++++ + ++ +S ++ + + P
Sbjct: 130 NVQIPLDYGGLGGKAIYIDTEGSFMVERVLQIAEACIEDLSEYSHHFYKDNQAFGVKMHP 189
Query: 184 TSLSE---------FTESLEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP 230
S+ E +TE + + K VK+++IDS+ + A
Sbjct: 190 NSILENIFYFRVCSYTEQIALVNYLDKFVTEHKDVKIIIIDSVTFHFRQDFDDMALRTRL 249
Query: 231 LSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
L + LA+ + +V+ NQV + H E FQ +
Sbjct: 250 LGEMSLKLMKLAKNFSLAVVMLNQVTTK-HIEG---SFQ-----------------LTLA 288
Query: 291 LGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
LG W+H+ T R++L +R ++KSP+ + +++ GI
Sbjct: 289 LGDSWSHSCTNRIILYWNDDERHAYIDKSPSLKSASAPYSVTSRGI 334
>gi|222618725|gb|EEE54857.1| hypothetical protein OsJ_02328 [Oryza sativa Japonica Group]
Length = 349
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 116/268 (43%), Gaps = 35/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T L+ L GG+ VTE+ G G GKTQ ++L++ +P YGGL G +YI
Sbjct: 89 HINTGSADLNNILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVEYGGLGGKAVYI 148
Query: 143 DVESTFTSRRMIEMGASSFPEIF------HSKGMA-------QEMAGRILVLQPTSLSEF 189
D E +F R+ ++ +I H K A + I + S +E
Sbjct: 149 DTEGSFMVERVYQIAEGCISDILEYFPHCHDKAPAGQEKLKPESFLADIYYFRICSYTEQ 208
Query: 190 TESLEKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ ++ L +++ V++++IDS+ + A LS + L++ +
Sbjct: 209 IAVINYLEKFLGEHKDVRIVIIDSVTFHFRQDFDDMALRTRVLSGLSLKLMKLSKAYNLA 268
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + + S FQ + LG W+H+ T RL+L
Sbjct: 269 VVLLNQVTTKFTEGS----FQ-----------------LTLALGDSWSHSCTNRLILYWN 307
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R+ ++KSP+ P + + + G+
Sbjct: 308 GNERYGFLDKSPSLPVASAPYAVTVKGV 335
>gi|442535544|gb|AGC52845.1| Rad51, partial [Hypsibius dujardini]
Length = 377
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 30/252 (11%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD L GG+ G +TE+ G +GKTQ C L++ LP GG +G +YID E TF
Sbjct: 137 KELDKLLQGGIETGSITEMFGEFRSGKTQLCHTLAVTCQLPIDMGGGEGKCLYIDTEGTF 196
Query: 149 TSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLL 208
R++ S E + G ++ + + + + L + +++++ LL
Sbjct: 197 RPERLL-----SIAERYGLNG--NDVLDNVAYARAYNTDHQMQLLVQAAAMMVESRFALL 249
Query: 209 VIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
++DS AL + R Q L+ + + LA+ + +++TNQV
Sbjct: 250 IVDSATALYRTDYSGRGELCARQMHLARFLRFLMRLADEFGVAVLITNQV---------- 299
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPP 324
V +D + T+ + G AHA T RL L G+ R + SP P
Sbjct: 300 ----VATVDAMAFAETKK-----PIGGNIIAHASTTRLSLRKGKGENRICKIYDSPCLPE 350
Query: 325 LAFSFTINPSGI 336
F+I GI
Sbjct: 351 AEAMFSIGNEGI 362
>gi|359415641|ref|ZP_09208069.1| DNA repair and recombination protein RadA [Candidatus Haloredivivus
sp. G17]
gi|358034001|gb|EHK02478.1| DNA repair and recombination protein RadA [Candidatus Haloredivivus
sp. G17]
Length = 316
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 31/257 (12%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + +D L GGV +TE G G+ KTQ +L++ GGL IYID
Sbjct: 84 ITTNSENVDEVLGGGVETQAITEFYGEYGSAKTQLSHQLAVNVQRDEEDGGLGREAIYID 143
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TFT R+ +M ++ ++ E I V + + ++ + +N
Sbjct: 144 TEDTFTPTRVEQMAEANGMDV-------DETLENIHVARAFNSDHQMLLADQAQDICAEN 196
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
V L+++DS+ A + R AP Q L+ H++ + LA + +VVTNQV
Sbjct: 197 DVGLIIVDSLTAQFRSDYVGRGELAPRQQKLNKHMNTLLRLANSHNLAVVVTNQV----- 251
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKS 319
+ D++ D T+ A+ G AH +R+ L ++K +R + S
Sbjct: 252 ---------MSNPDQMFGDPTK------AIGGHIVAHNSAVRVYLRKSKKDKRIARLVDS 296
Query: 320 PTSPPLAFSFTINPSGI 336
P P F + GI
Sbjct: 297 PYMPEGEAVFKVKDEGI 313
>gi|302698277|ref|XP_003038817.1| RecA family ATPase [Schizophyllum commune H4-8]
gi|300112514|gb|EFJ03915.1| RecA family ATPase, partial [Schizophyllum commune H4-8]
Length = 348
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 144/336 (42%), Gaps = 44/336 (13%)
Query: 9 MRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTAL 68
++L + N + N+TT + +L+K+ + ++V +I+ F T +
Sbjct: 48 LKLKSAAINTVSGVNMTTRR--------QLLKIKGMSEAKVEKIKEAAHKILGSSFATGV 99
Query: 69 LLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
+ ++R + T K +D L GG+ ++E+ G TGKTQ +S++A L
Sbjct: 100 EIQDKRKRVNTI----STGSKAVDGILGGGIMSQSISEVYGEFRTGKTQLAHTMSVVAQL 155
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKG-MAQEMAGRILVLQPTSLS 187
P GG G V YID E TF R+ S E F G MA E IL + +
Sbjct: 156 PPDLGGASGKVAYIDTEGTFRPDRI-----KSIAERFGVDGSMALE---NILYARAFNSE 207
Query: 188 EFTESLEKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAE 243
E + + +++ +LL++DS+ AL + R + Q L+ +S +T L+E
Sbjct: 208 HQMELINECSSRFAEDKDFRLLIVDSIMALFRVDYSGRGELSERQQKLAQMLSKLTKLSE 267
Query: 244 FSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH-WAHAVTIR 302
I I++TNQV+ D F + +G H +HA R
Sbjct: 268 EYNIAILLTNQVQ---SDPGATMTF--------------VAGGALKPIGGHILSHASATR 310
Query: 303 LVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
+ L + ++ +R + SP P S+ ++ G S
Sbjct: 311 MFLRKGRAEERVAKLVDSPDRPESEASYKLDEGGWS 346
>gi|68076139|ref|XP_679989.1| meiotic recombination protein dmc1-like protein, [Plasmodium
berghei strain ANKA]
gi|56500849|emb|CAH94824.1| meiotic recombination protein dmc1-like protein, putative
[Plasmodium berghei]
Length = 345
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 132/309 (42%), Gaps = 35/309 (11%)
Query: 34 TELELMKLLDVELSEVRSALALVSEI-VCPPFQTALLLMEQRAATEHLGGHLPTRLKGLD 92
T+ EL + + +V L + S+I C F T L+++R+ + T LD
Sbjct: 61 TKKELCNVKGISEVKVDKILEVASKIENCSAFITGNQLVQKRSKVLKI----TTGSSVLD 116
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
L GG +TEL G GKTQ C L++ A LP + G +G V YID E TF +
Sbjct: 117 KTLGGGFESMSITELFGENRCGKTQVCHTLAVTAQLPKNMQGGNGKVCYIDTEGTFRPEK 176
Query: 153 MIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVID 211
+ ++ A F G+ ++++ IL + + + L + + LLV+D
Sbjct: 177 ICKI-AQRF-------GLNSEDVLDNILYARAFTHEHLYQLLATSAAKMCEEPFALLVVD 228
Query: 212 SMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
S+ +L R + Q L+ +S+++ L E I IV+TNQV D F
Sbjct: 229 SIISLFRVDFSGRGNLSERQQKLNKIMSVLSKLGEQFNIAIVITNQVMS---DPGATMTF 285
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAF 327
M + H++ HA T RL L + K QR V +P P +
Sbjct: 286 IANPMKPV-------GGHVI-------GHASTTRLSLRKGKGDQRVCKVYDAPNLPEIEC 331
Query: 328 SFTINPSGI 336
F ++ G+
Sbjct: 332 IFQLSDGGV 340
>gi|145349400|ref|XP_001419122.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579353|gb|ABO97415.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 343
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 127/289 (43%), Gaps = 36/289 (12%)
Query: 59 IVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF 118
IV F TA ++ +QR T ++ T +D L GG+ G VTE+ G TGKTQ
Sbjct: 85 IVPAGFTTAKMIDQQRQDTIYI----TTGSAKVDELLQGGIESGSVTEIYGEFRTGKTQL 140
Query: 119 CLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI 178
L++ + +P +GG +G +YID E TF +R+I++ E F+ A + +
Sbjct: 141 MHTLAVTSQMPIEHGGGEGKCLYIDTEGTFRPQRLIQI-----AERFNMDPSA--VLDNV 193
Query: 179 LVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHI 235
+ ++ +E L + + + L++IDS+ L +E R + Q L +
Sbjct: 194 AYAKAHNVEHQSELLLAAAGMMAETRFSLMIIDSVTNLYRTEYEGRGELSARQMHLGKFL 253
Query: 236 SLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGF 293
+ LA+ + ++V+NQV P+ PF + + + G
Sbjct: 254 RQLARLADEFGVAVIVSNQVVANPEGG------PFA-------------GANALKPIGGN 294
Query: 294 HWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
AHA T RL L G+ R M V SP P F+I+ GI D
Sbjct: 295 IMAHASTTRLALRKGRGENRVMKVVCSPVLPESEAQFSISEFGIEDAKD 343
>gi|52548595|gb|AAU82444.1| recombinase [uncultured archaeon GZfos17F1]
Length = 324
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 120/286 (41%), Gaps = 42/286 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L +D + GG +TE+ G G+GKTQ +L+
Sbjct: 66 FETGDAILERRKEI----GKLKLGCTEVDNMMGGGFETQAITEVYGEFGSGKTQIAHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRR---MIEMGASSF-----PEIF-HSKGMAQEM 174
+ LP GGL G VI ID E+TF R M+E A + PE F + +A+
Sbjct: 122 VNVQLPVGLGGLYGSVIIIDTENTFRPDRIKSMVEGAAKRYETEYDPEEFLKNIHVARAY 181
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L + SE +SL + V+LL++DS+ A + R A Q L
Sbjct: 182 NSNHQILLMDTASELADSLRDTDMP-----VRLLIVDSLTAHFRAEYVGRGTLADRQQKL 236
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
+ H+ + + + + VTNQV + K D D T+ +
Sbjct: 237 NKHLHALMRFGDLNNAMVFVTNQV--------------MSKPDAFFGDPTK------PIG 276
Query: 292 GFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G H T RL L ++K +R + SP P +T+ G+
Sbjct: 277 GHILGHTSTFRLYLRKSKGDKRVAKLVDSPNLPDGEALYTVTQEGL 322
>gi|195505060|ref|XP_002099346.1| GE23416 [Drosophila yakuba]
gi|194185447|gb|EDW99058.1| GE23416 [Drosophila yakuba]
Length = 335
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 130/316 (41%), Gaps = 33/316 (10%)
Query: 26 TAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLP 85
T + + T+ +LM + + +V + +++V F +A + RA L
Sbjct: 44 TVESVANATKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQL----S 99
Query: 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145
T K LD L GG+ G +TE+ G GKTQ C L++ LP G +G +YID E
Sbjct: 100 TGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKCMYIDTE 159
Query: 146 STFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQV 205
+TF R+ + K E+ + + + + T+ ++ L +++
Sbjct: 160 NTFRPERLAAIAQ-------RYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRY 212
Query: 206 KLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDE 262
LL++DS AL + R A Q+ L + ++ LA+ + +V+TNQV
Sbjct: 213 ALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASLDGA 272
Query: 263 SCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPT 321
+ F +K + G AH+ T RL L G+ R + SP
Sbjct: 273 PGM--FDAKK----------------PIGGHIMAHSSTTRLYLRKGKGETRICKIYDSPC 314
Query: 322 SPPLAFSFTINPSGIS 337
P F I P GI
Sbjct: 315 LPESEAMFAILPDGIG 330
>gi|258570189|ref|XP_002543898.1| DNA repair protein RAD51 [Uncinocarpus reesii 1704]
gi|237904168|gb|EEP78569.1| DNA repair protein RAD51 [Uncinocarpus reesii 1704]
Length = 348
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 127/299 (42%), Gaps = 34/299 (11%)
Query: 46 LSEVRSALALVSEIVCPP--FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGV 103
+SE ++A L I P F TA + +RA + T K LD L GG+ G
Sbjct: 66 ISEQKAARVLAEAIKIVPMGFTTATEIHARRADLICI----TTGSKQLDTLLAGGIETGS 121
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163
+TE+ G TGK+Q C L++ LP GG +G +YID E TF R++ + A +
Sbjct: 122 ITEIFGEFRTGKSQLCHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAV-AQRYGL 180
Query: 164 IFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ 223
+ +E+ + + + + L + + + + LL++DS +L
Sbjct: 181 V------GEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLLIVDSATSLYRTDFSG 234
Query: 224 R---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKD 279
R + Q+ L+ + + LA+ + +V+TNQV Q S ++ +K
Sbjct: 235 RGELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQVDGGPSAMFNPDPKK------- 287
Query: 280 RTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L+ G+ R + SP P F IN GI
Sbjct: 288 ---------PIGGNILAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEDGIG 337
>gi|17864108|ref|NP_524583.1| spindle A, isoform A [Drosophila melanogaster]
gi|2500104|sp|Q27297.1|RAD51_DROME RecName: Full=DNA repair protein Rad51 homolog; AltName:
Full=Protein spindle-A; AltName: Full=RecA protein
homolog
gi|693878|dbj|BAA04580.1| Rad51 [Drosophila melanogaster]
gi|762789|gb|AAA64873.1| RAD51-like protein [Drosophila melanogaster]
gi|807700|dbj|BAA07039.1| RecA protein homologue [Drosophila melanogaster]
gi|7301897|gb|AAF57005.1| spindle A, isoform A [Drosophila melanogaster]
gi|255522982|gb|ACU12383.1| RE29170p [Drosophila melanogaster]
Length = 336
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 130/316 (41%), Gaps = 33/316 (10%)
Query: 26 TAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLP 85
T + + T+ +LM + + +V + +++V F +A + RA L
Sbjct: 45 TVESVANATKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQL----S 100
Query: 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145
T K LD L GG+ G +TE+ G GKTQ C L++ LP G +G +YID E
Sbjct: 101 TGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKCMYIDTE 160
Query: 146 STFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQV 205
+TF R+ + K E+ + + + + T+ ++ L +++
Sbjct: 161 NTFRPERLAAIAQ-------RYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRY 213
Query: 206 KLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDE 262
LL++DS AL + R A Q+ L + ++ LA+ + +V+TNQV
Sbjct: 214 ALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASLDGA 273
Query: 263 SCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPT 321
+ F +K + G AH+ T RL L G+ R + SP
Sbjct: 274 PGM--FDAKK----------------PIGGHIMAHSSTTRLYLRKGKGETRICKIYDSPC 315
Query: 322 SPPLAFSFTINPSGIS 337
P F I P GI
Sbjct: 316 LPESEAMFAILPDGIG 331
>gi|15242137|ref|NP_200554.1| DNA repair protein XRCC3-like protein [Arabidopsis thaliana]
gi|30696870|ref|NP_851202.1| DNA repair protein XRCC3-like protein [Arabidopsis thaliana]
gi|55583983|sp|Q9FKM5.1|XRCC3_ARATH RecName: Full=DNA repair protein XRCC3 homolog; AltName: Full=X-ray
repair cross-complementing protein 3 homolog;
Short=AtXRCC3
gi|9758307|dbj|BAB08781.1| unnamed protein product [Arabidopsis thaliana]
gi|15425729|dbj|BAB64342.1| AtXRCC3alpha [Arabidopsis thaliana]
gi|16444953|dbj|BAB70684.1| AtXRCC3beta [Arabidopsis thaliana]
gi|19571703|emb|CAD27641.1| Rad51B protein [Arabidopsis thaliana]
gi|19571705|emb|CAD27642.1| Rad51B protein [Arabidopsis thaliana]
gi|20384750|gb|AAK54457.1| DNA repair protein XRCC3 [Arabidopsis thaliana]
gi|109946499|gb|ABG48428.1| At5g57450 [Arabidopsis thaliana]
gi|332009520|gb|AED96903.1| DNA repair protein XRCC3-like protein [Arabidopsis thaliana]
gi|332009521|gb|AED96904.1| DNA repair protein XRCC3-like protein [Arabidopsis thaliana]
Length = 304
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 124/289 (42%), Gaps = 46/289 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T + LD L GG+ +TE+V +G GKTQ CL+LSL LP +GGL+G +Y+
Sbjct: 21 LTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGGLNGSSLYLH 80
Query: 144 VESTFTSRRMIEMGAS---SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSL 200
E F RR+ ++ + S P I+ + V S+ + + +I +
Sbjct: 81 SEFPFPFRRLHQLSHTFHQSNPSIY--ANYNDNPCDHVFVQNVHSVDHLFDIMPRIDGFV 138
Query: 201 LQNQ----VKLLVIDSMEAL-------VPGVHEQRAPGQHPLSWHIS-LITSLAEFSRIP 248
++ +KL+V+DS+ AL P ++R+ L + IS + LA +
Sbjct: 139 GNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRS----SLFFKISGKLKQLASKFDLA 194
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLE-- 306
IV+TNQV L ++ + R L R +V LG WA+ V R +
Sbjct: 195 IVITNQVTDLVETSDGLSGLRIGNL-RYLYSSGR---RVVPSLGLAWANCVNSRFFISRS 250
Query: 307 -------------------AKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
++S +R +++ SP P + F I GI
Sbjct: 251 DGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGI 299
>gi|124360172|gb|ABD33114.2| RecA bacterial DNA recombination protein [Medicago truncatula]
Length = 269
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 116/273 (42%), Gaps = 35/273 (12%)
Query: 78 EHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDG 137
E + T LD L GG+ VTE+ G G GKTQ ++L++ +P YGGL G
Sbjct: 5 ERFSSLITTSCLDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAVNVQIPLDYGGLGG 64
Query: 138 GVIYIDVESTFTSRRMIEMGASSFPEIF-HSKGMAQEMAGRILVLQPTSLSE-------- 188
IYID E +F R++++ + ++ +S ++ + + P S+ E
Sbjct: 65 KAIYIDTEGSFMVERVLQIAEACIEDLSEYSHHFYKDNQAFGVKMHPNSILENIFYFRVC 124
Query: 189 -FTESLEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAE 243
+TE + + K VK+++IDS+ + A L + LA+
Sbjct: 125 SYTEQIALVNYLDKFVTEHKDVKIIIIDSVTFHFRQDFDDMALRTRLLGEMSLKLMKLAK 184
Query: 244 FSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL 303
+ +V+ NQV + H E FQ + LG W+H+ T R+
Sbjct: 185 NFSLAVVMLNQVTTK-HIEG---SFQ-----------------LTLALGDSWSHSCTNRI 223
Query: 304 VLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+L +R ++KSP+ + +++ GI
Sbjct: 224 ILYWNDDERHAYIDKSPSLKSASAPYSVTSRGI 256
>gi|357477597|ref|XP_003609084.1| DNA repair protein RAD51-like protein [Medicago truncatula]
gi|357477663|ref|XP_003609117.1| DNA repair protein RAD51-like protein [Medicago truncatula]
gi|355510139|gb|AES91281.1| DNA repair protein RAD51-like protein [Medicago truncatula]
gi|355510172|gb|AES91314.1| DNA repair protein RAD51-like protein [Medicago truncatula]
Length = 347
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 120/291 (41%), Gaps = 49/291 (16%)
Query: 65 QTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124
QTA ++ + E + T LD L GG+ VTE+ G G GKTQ ++L++
Sbjct: 74 QTAWDMLNE----ERFSSLITTSCLDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAV 129
Query: 125 LAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRI 178
+P YGGL G IYID E +F R++++ S + FH A +
Sbjct: 130 NVQIPLDYGGLGGKAIYIDTEGSFMVERVLQIAEACIEDMSEYSHHFHKDNQAFGVK--- 186
Query: 179 LVLQPTSLSE---------FTESLEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRA 225
+ P S+ E +TE + + K VK+++IDS+ + A
Sbjct: 187 --MHPNSILENIFYFRVCSYTEQIALVNYLDKFVTEHKDVKIIIIDSVTFHFRQDFDDMA 244
Query: 226 PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYS 285
L + LA+ + +V+ NQV + H E FQ
Sbjct: 245 LRTRLLGEMSLKLMKLAKNLSLAVVMLNQVTTK-HIEG---SFQ---------------- 284
Query: 286 HIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ LG W+H+ T R++L +R ++KSP+ + +++ GI
Sbjct: 285 -LTLALGDSWSHSCTNRIILYWNGDERHAYIDKSPSLKSASAPYSVTSRGI 334
>gi|119173930|ref|XP_001239326.1| hypothetical protein CIMG_08947 [Coccidioides immitis RS]
Length = 366
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 129/300 (43%), Gaps = 36/300 (12%)
Query: 46 LSEVRSA--LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGV 103
+SE ++A LA ++IV F TA + +RA + T + LD L GGV G
Sbjct: 84 ISEQKAAKILAEATKIVPMGFTTATEMHARRADLICI----TTGSRQLDTLLAGGVETGS 139
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163
+TE+ G TGK+Q C L++ LP GG +G +YID E TF R++
Sbjct: 140 ITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLL--------A 191
Query: 164 IFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHE 222
+ G+A +E+ + + + + L + + + + LLV+DS +L
Sbjct: 192 VAQRYGLAGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLLVVDSATSLYRTDFS 251
Query: 223 QR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILK 278
R + Q L+ + + LA+ + +V+TNQV Q S ++ +K
Sbjct: 252 GRGELSSRQTHLARFMRTLQRLADEFGVAVVITNQVVAQVEGGPSAMFNPDPKK------ 305
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L+ G+ R + SP P F IN GI
Sbjct: 306 ----------PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEDGIG 355
>gi|325190521|emb|CCA25020.1| DNA repair protein RAD51 putative [Albugo laibachii Nc14]
Length = 342
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 111/268 (41%), Gaps = 49/268 (18%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T LD L GG G +TEL G TGKTQ C +L + LP GG +G ++ID
Sbjct: 106 LSTGSSALDELLKGGFETGSITELFGEFRTGKTQLCHQLCVTCQLPVDRGGGEGKALFID 165
Query: 144 VESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI 196
E TF +R++ + G S + ++ E ++L+ ++E
Sbjct: 166 TEGTFRPQRLVAIAERYGLDGDSVLDNVAFARAYNSEHQMQLLIQASAMMAE-------- 217
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTN 253
++ L+++DS AL R A Q L+ + +T +A+ + +V+TN
Sbjct: 218 ------SRYALVIVDSATALFRTDFSGRGELAARQQELAKFLRALTKMADEFGVAVVITN 271
Query: 254 QVRPQSHDESCLY---PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG 310
Q+ ++ +S ++ P Q + G AHA RL L G
Sbjct: 272 QM--TANPDSGMFAKDPLQ-------------------PIGGNIMAHASCTRLRLRKARG 310
Query: 311 Q-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ R M V SP P + I GI+
Sbjct: 311 ENRVMKVVDSPILPEAEAVYAITEQGIT 338
>gi|303318132|ref|XP_003069067.1| DNA repair protein rhp51, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240108750|gb|EER26922.1| DNA repair protein rhp51, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320037268|gb|EFW19206.1| DNA repair protein RAD51 [Coccidioides posadasii str. Silveira]
gi|392869512|gb|EAS28023.2| DNA repair protein rhp51 [Coccidioides immitis RS]
Length = 348
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 129/300 (43%), Gaps = 36/300 (12%)
Query: 46 LSEVRSA--LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGV 103
+SE ++A LA ++IV F TA + +RA + T + LD L GGV G
Sbjct: 66 ISEQKAAKILAEATKIVPMGFTTATEMHARRADLICI----TTGSRQLDTLLAGGVETGS 121
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163
+TE+ G TGK+Q C L++ LP GG +G +YID E TF R++
Sbjct: 122 ITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLL--------A 173
Query: 164 IFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHE 222
+ G+A +E+ + + + + L + + + + LLV+DS +L
Sbjct: 174 VAQRYGLAGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLLVVDSATSLYRTDFS 233
Query: 223 QR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILK 278
R + Q L+ + + LA+ + +V+TNQV Q S ++ +K
Sbjct: 234 GRGELSSRQTHLARFMRTLQRLADEFGVAVVITNQVVAQVEGGPSAMFNPDPKK------ 287
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L+ G+ R + SP P F IN GI
Sbjct: 288 ----------PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEDGIG 337
>gi|195574987|ref|XP_002105464.1| GD17366 [Drosophila simulans]
gi|194201391|gb|EDX14967.1| GD17366 [Drosophila simulans]
Length = 336
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 130/316 (41%), Gaps = 33/316 (10%)
Query: 26 TAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLP 85
T + + T+ +LM + + +V + +++V F +A + RA L
Sbjct: 45 TVESVANATKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQL----S 100
Query: 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145
T K LD L GG+ G +TE+ G GKTQ C L++ LP G +G +YID E
Sbjct: 101 TGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKCMYIDTE 160
Query: 146 STFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQV 205
+TF R+ + K E+ + + + + T+ ++ L +++
Sbjct: 161 NTFRPERLAAIAQ-------RYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRY 213
Query: 206 KLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDE 262
LL++DS AL + R A Q+ L + ++ LA+ + +V+TNQV
Sbjct: 214 ALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASLDGA 273
Query: 263 SCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPT 321
+ F +K + G AH+ T RL L G+ R + SP
Sbjct: 274 PGM--FDAKK----------------PIGGHIMAHSSTTRLYLRKGKGETRICKIYDSPC 315
Query: 322 SPPLAFSFTINPSGIS 337
P F I P GI
Sbjct: 316 LPESEAMFAILPDGIG 331
>gi|405971979|gb|EKC36778.1| DNA repair protein RAD51-like protein 2 [Crassostrea gigas]
Length = 221
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 98/191 (51%), Gaps = 14/191 (7%)
Query: 152 RMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVID 211
R++E+ FP++++S+ MA +LV + + + LE ++ ++ + ++L+++D
Sbjct: 8 RLVEIAQHKFPDLYNSEEDLCRMAENVLVDNHQTCASLIKKLESLEEEVISHSIRLVIVD 67
Query: 212 SMEALVPGVHEQRAPGQ-----HPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
S+ +LV A + LS +L+ +AE IP++VTNQ+ + ++
Sbjct: 68 SIASLVRKEFSSSAGSNLVQRTNFLSRQAALLKYIAEVFCIPVIVTNQITTRFGRQA--- 124
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
Q ++ + D ++ LG W+H V RL+L+ G+ R + V KSP +P
Sbjct: 125 TEQDEEETTEISD-----GYVTVALGNTWSHNVNTRLILQYLDGEKRQVLVAKSPVAPFT 179
Query: 326 AFSFTINPSGI 336
AF++TI GI
Sbjct: 180 AFNYTIQKDGI 190
>gi|189210816|ref|XP_001941739.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|330918612|ref|XP_003298289.1| hypothetical protein PTT_08944 [Pyrenophora teres f. teres 0-1]
gi|187977832|gb|EDU44458.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|311328605|gb|EFQ93618.1| hypothetical protein PTT_08944 [Pyrenophora teres f. teres 0-1]
Length = 348
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 125/291 (42%), Gaps = 36/291 (12%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + +R +E + + T K LD L GG+ G +TE+ G
Sbjct: 73 LAEASKLVPMGFTTATEMHSRR--SELI--SITTGSKQLDTLLAGGIETGSITEIFGEFR 128
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R + + + G++
Sbjct: 129 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRCL--------AVANRYGLSG 180
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV----PGVHEQRAPG 227
+E+ + + + E L + + + + LLV+DS AL G E A
Sbjct: 181 EEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLLVVDSATALYRTDFAGRGELSARQ 240
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSH 286
H L+ + + LA+ I +++TNQV Q S ++ +K
Sbjct: 241 TH-LAKFMRTLQRLADEFGIAVIITNQVVAQVDGGPSAMFNPDPKK-------------- 285
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AHA T RL L G+ R + SP P F IN GI
Sbjct: 286 --PIGGNIIAHASTTRLSLRKGRGETRVCKIYDSPCLPESDCLFAINEDGI 334
>gi|194905727|ref|XP_001981245.1| GG11967 [Drosophila erecta]
gi|190655883|gb|EDV53115.1| GG11967 [Drosophila erecta]
Length = 335
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 130/316 (41%), Gaps = 33/316 (10%)
Query: 26 TAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLP 85
T + + T+ +LM + + +V + +++V F +A + RA L
Sbjct: 44 TVESVANATKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQL----S 99
Query: 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145
T K LD L GG+ G +TE+ G GKTQ C L++ LP G +G +YID E
Sbjct: 100 TGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKCMYIDTE 159
Query: 146 STFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQV 205
+TF R+ + K E+ + + + + T+ ++ L +++
Sbjct: 160 NTFRPERLAAIAQ-------RYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRY 212
Query: 206 KLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDE 262
LL++DS AL + R A Q+ L + ++ LA+ + +V+TNQV
Sbjct: 213 ALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASLDGA 272
Query: 263 SCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPT 321
+ F +K + G AH+ T RL L G+ R + SP
Sbjct: 273 PGM--FDAKK----------------PIGGHIMAHSSTTRLYLRKGKGETRICKIYDSPC 314
Query: 322 SPPLAFSFTINPSGIS 337
P F I P GI
Sbjct: 315 LPESEAMFAILPDGIG 330
>gi|402594734|gb|EJW88660.1| DMC1 family protein [Wuchereria bancrofti]
Length = 432
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 134/311 (43%), Gaps = 44/311 (14%)
Query: 40 KLLDVE-LSEVRSALALVSEIVCP----PFQTALLLMEQRAATEHLGGHLPTRLKGLDAA 94
+L DV+ LSE + + + E+ C F TAL + E+R L + T + LD
Sbjct: 149 RLCDVKGLSEAK--VDKIKEVACKLLNNGFITALEVTERRK----LCYRISTGSRDLDKL 202
Query: 95 LCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGG-VIYIDVESTFTSRRM 153
L GG+ +TE+ G TGKTQ L ++ + + GG VIYID E+TF R+
Sbjct: 203 LGGGIESQAITEVFGEFRTGKTQLSHTLCVMCQIASETSNFKGGKVIYIDTENTFRPDRL 262
Query: 154 IEMGASSFPEIFHSKGMAQE-MAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVI 210
++ E F M QE M IL + + E L+ + + KLL++
Sbjct: 263 RQIN-----ERFK---MDQEAMLDNILYARAYTSDHQMELLDFVAAKFHEELGIFKLLIV 314
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
DS+ AL + R A Q L+ +S + +AE + + +TNQ+ + D
Sbjct: 315 DSIMALFRVDYSGRGELAERQQKLAQMLSRLQKIAEEYNVAVFITNQM---TADPGAGMT 371
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLA 326
FQ V G AHA T R++L+ G+ R + SP P
Sbjct: 372 FQADPKK--------------PVGGHILAHASTTRIMLKKGRGETRIAKIYDSPDLPENE 417
Query: 327 FSFTINPSGIS 337
+F I GI+
Sbjct: 418 ATFAIATIGIT 428
>gi|154151638|ref|YP_001405256.1| DNA repair and recombination protein RadA [Methanoregula boonei
6A8]
gi|154000190|gb|ABS56613.1| DNA repair and recombination protein RadA [Methanoregula boonei
6A8]
Length = 325
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 124/289 (42%), Gaps = 50/289 (17%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T + EQR L +P LDA + GG+ +TE+ G G+GK+Q +++
Sbjct: 68 FRTGKDIFEQRKEIRKLSFRVPE----LDALMGGGLETQAITEMYGEFGSGKSQVVHQMA 123
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM----GASSFPEIFHSKGMAQEMAGRIL 179
+ LP GG++G VIYID E+TF R+ +M G P+ QE I
Sbjct: 124 VNVQLPEEQGGMNGSVIYIDTENTFRPERIEQMVAGLGIDDIPD-------TQEFLDNIH 176
Query: 180 VLQPTS------LSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQH 229
+ + + L E + L ++K S + VKL +IDS+ A + R A Q
Sbjct: 177 IARAHTSDHQMLLVENSRDLANELKGS--EKPVKLFIIDSLTAHFRSEYAGRGTLAARQQ 234
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVA 289
L+ H+ + L + +VTNQV + + ++
Sbjct: 235 KLNRHMHELFKLIDEHNAVGLVTNQV---------------------MSNPAVFFGDPTK 273
Query: 290 VLGFHW-AHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+G + H T R+ L ++K+G+R + SP P F + +G+
Sbjct: 274 PIGGNIVGHTATFRIYLRKSKAGKRIARLVDSPNLPEGEAPFMVEEAGL 322
>gi|386875858|ref|ZP_10118012.1| DNA repair and recombination protein RadA, partial [Candidatus
Nitrosopumilus salaria BD31]
gi|386806330|gb|EIJ65795.1| DNA repair and recombination protein RadA, partial [Candidatus
Nitrosopumilus salaria BD31]
Length = 364
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 30/258 (11%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T LD GG+ +TE+ G G GKTQF +S++ GGL+G V+Y
Sbjct: 86 GKITTGTNCLDTLFDGGIETQALTEVYGEFGCGKTQFAHTMSVMVQKSKEEGGLEGSVLY 145
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
ID E+TF R++ + + + +++ I+V + + + LE+ +
Sbjct: 146 IDTENTFRPERIVSIAQAHDMD-------PEKVLDHIIVARAYNSAHQVLILEEAGQIIE 198
Query: 202 QNQVKLLVIDSMEALVPGVHEQRAP---GQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+N VKL+V DS L + R Q L+ + L++ +AE + TNQV
Sbjct: 199 ENNVKLIVADSAVGLFRAEYLGRGTLSVRQQKLNHFVHLLSRIAETYNCAAIATNQV--- 255
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEK 318
+ D D TR + G AH T R+ + +R +
Sbjct: 256 -----------MASPDVFFGDPTR------PIGGNVVAHTSTYRIYFKKSGKKRIARMVD 298
Query: 319 SPTSPPLAFSFTINPSGI 336
SP P F + +G+
Sbjct: 299 SPHHPEEEVIFALGEAGV 316
>gi|13161942|emb|CAC32998.1| putative DMC1 protein [Pleurotus ostreatus]
gi|13171056|emb|CAC33176.1| DMC1 homologue [Pleurotus ostreatus]
Length = 347
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 135/309 (43%), Gaps = 36/309 (11%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T +L+K+ + ++V +I+ F T + + E+R + T K +D
Sbjct: 64 TRRQLLKIKGMSEAKVEKIKEAAHKILGSSFATGIEIQEKRKRV----NTISTGSKNVDV 119
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+ V+E+ G TGKTQ +S++A LP GG G V YID E TF R+
Sbjct: 120 ILGGGIMSQSVSEVYGEFRTGKTQLAHTMSVVAQLPPDLGGASGKVAYIDTEGTFRPDRI 179
Query: 154 IEMGASSFPEIFHSKG-MAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ-VKLLVID 211
S E F G +A E IL + + E + + + +++ +LL++D
Sbjct: 180 -----RSIAERFGVDGSLALE---NILYARAFNSEHQMELINECSMRFAEDKDFRLLIVD 231
Query: 212 SMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
S+ AL + R + Q L+ +S +T L+E I +++TNQV+ D F
Sbjct: 232 SIMALFRVDYSGRGELSERQQKLAQMLSRLTKLSEEYNIAVLLTNQVQS---DPGATMTF 288
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFH-WAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLA 326
+ +G H +HA + RL L + ++ +R + SP P
Sbjct: 289 --------------VAGGALKPIGGHILSHASSTRLFLRKGRAEERVAKLVDSPDRPESE 334
Query: 327 FSFTINPSG 335
S+ ++ G
Sbjct: 335 ASYKLDEGG 343
>gi|195341431|ref|XP_002037313.1| GM12184 [Drosophila sechellia]
gi|194131429|gb|EDW53472.1| GM12184 [Drosophila sechellia]
Length = 336
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 130/316 (41%), Gaps = 33/316 (10%)
Query: 26 TAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLP 85
T + + T+ +LM + + +V + +++V F +A + RA L
Sbjct: 45 TVESVANATKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQL----S 100
Query: 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145
T K LD L GG+ G +TE+ G GKTQ C L++ LP G +G +YID E
Sbjct: 101 TGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKCMYIDTE 160
Query: 146 STFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQV 205
+TF R+ + K E+ + + + + T+ ++ L +++
Sbjct: 161 NTFRPERLAAIAQ-------RYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRY 213
Query: 206 KLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDE 262
LL++DS AL + R A Q+ L + ++ LA+ + +V+TNQV
Sbjct: 214 ALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASLDGA 273
Query: 263 SCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPT 321
+ F +K + G AH+ T RL L G+ R + SP
Sbjct: 274 PGM--FDAKK----------------PIGGHIMAHSSTTRLYLRKGKGETRICKIYDSPC 315
Query: 322 SPPLAFSFTINPSGIS 337
P F I P GI
Sbjct: 316 LPESEAMFAILPDGIG 331
>gi|400601380|gb|EJP69023.1| putative RAD51 protein [Beauveria bassiana ARSEF 2860]
Length = 348
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 124/290 (42%), Gaps = 32/290 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + ++R +E + + T K LD L GG+ G VTEL G
Sbjct: 76 LAEASKLVPMGFTTATEMHQRR--SELI--SITTGSKNLDTLLAGGIETGSVTELFGEFR 131
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ 172
TGK+Q C L++ LP GG +G +YID E TF R++ S F G +
Sbjct: 132 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLL-----SVANRFGLSG--E 184
Query: 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQH 229
E+ + + + + L + + + + LL++DS AL R Q
Sbjct: 185 EVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATALYRTDFCGRGELSNRQT 244
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHIV 288
L+ + + LA+ + +V+TNQV Q S ++ +K
Sbjct: 245 HLAKFMRTLQRLADEFGVAVVITNQVVAQVDGGPSAMFNPDPKK---------------- 288
Query: 289 AVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T R+ L+ G+ R + SP P F I GIS
Sbjct: 289 PIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDTLFAIGEDGIS 338
>gi|10944306|dbj|BAB16892.1| DMC1 [Cynops pyrrhogaster]
Length = 342
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 129/303 (42%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A V++++ P F TA E+R + H+ T + D L GG+
Sbjct: 67 LSEAKVDKIKEA---VNKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 119
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G VI+ID E+TF R+ ++ A
Sbjct: 120 SMAITETFGEFRTGKTQLSHTLCVTAQLPGTDGYTGGKVIFIDTENTFRPDRLRDI-ADR 178
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLLVIDS+ AL
Sbjct: 179 FS-VDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLVIDSIMALFR 232
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ ++ + ++E + + VTNQ+ + D FQ
Sbjct: 233 VDFSGRGELAERQQKLAQMLARLQKISEEYNVAVFVTNQM---TADPGAAMSFQADPKKP 289
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 290 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPDMPENEATFAITAG 335
Query: 335 GIS 337
GIS
Sbjct: 336 GIS 338
>gi|145335240|ref|NP_172254.2| DNA repair protein RAD51-like 4 [Arabidopsis thaliana]
gi|83305360|sp|Q9LQQ2.2|RA51D_ARATH RecName: Full=DNA repair protein RAD51 homolog 4; Short=AtRAD51D
gi|57283103|emb|CAD70703.1| putative DNA recombination protein [Arabidopsis thaliana]
gi|58430742|dbj|BAD89165.1| AtRAD51D [Arabidopsis thaliana]
gi|90969171|gb|ABE02570.1| RAD51D splice variant a [Arabidopsis thaliana]
gi|90969179|gb|ABE02658.1| RAD51D splice variant a [Arabidopsis thaliana]
gi|332190052|gb|AEE28173.1| DNA repair protein RAD51-like 4 [Arabidopsis thaliana]
Length = 322
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 120/251 (47%), Gaps = 25/251 (9%)
Query: 17 NIFAARNITTAKDAL--SLTELELMKLLDVELSEVRSALALVSEIV---CPPFQTALLLM 71
+ A+ I T +D L L EL ++ + L+ ++ C P L L+
Sbjct: 20 DFCASHGILTIEDFLLHDLYELTAFSQRQTNADRLKEGITLILSLIERQCRPLVNGLKLL 79
Query: 72 EQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAH 131
E +H L T K D+ L GG G +TELVGP+ +GKTQFC++ + A H
Sbjct: 80 EDLHRNKHT---LSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQFCMQAAASVA-ENH 135
Query: 132 YGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTE 191
G V+Y+D ++F++RR+ + SS + Q++ RIL + +
Sbjct: 136 L----GRVLYLDTGNSFSARRIAQFICSSSDAT-----LGQKVMSRILCHTVYDIYTLFD 186
Query: 192 SLEKIKVSLL------QNQVKLLVIDSMEALV-PGVHEQRAPGQHPLSWHISLITSLAEF 244
+L+ ++++L +++++LLV+DS+ +L+ P + + G+ + L+ LA
Sbjct: 187 TLQDLEITLRLQMNVNESRLRLLVVDSISSLITPILGGSGSQGRALMVAIGYLLKKLAHE 246
Query: 245 SRIPIVVTNQV 255
I I+VTN
Sbjct: 247 HSIAILVTNHT 257
>gi|348536303|ref|XP_003455636.1| PREDICTED: DNA repair protein XRCC3-like [Oreochromis niloticus]
Length = 339
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 23/227 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+P G +TEL G +GTGKTQ L+LSL PA +GGL G +Y+ E +F
Sbjct: 82 LDRLLRGGLPVGGITELAGESGTGKTQVGLQLSLSVQYPAEHGGLGAGALYVCTEDSFPI 141
Query: 151 RRMIEMGASSF---PEIFHSKGMAQEMAGRILVLQPTSLSEFTESL-EKIKVSLLQNQVK 206
+R+ ++ ++ + + + + L L + ++ L + V+
Sbjct: 142 KRLHQLIGEQVCLRSDVPADLVNSLRFSDHVYIEHAADLDSLQVCLTRRARLLLARGLVR 201
Query: 207 LLVIDSMEALVPG---VHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDES 263
L+V+DS+ AL + + L++ +L EFS P++ NQV P S +
Sbjct: 202 LIVVDSVAALFRAEFQADDWLERNRRLLTFSSTLHHLSQEFS-TPVLCINQVTPSSVNFL 260
Query: 264 CLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG 310
L P S + LG WA+ V +RL++ G
Sbjct: 261 LLRP---------------SSSTVSPALGLAWANQVMVRLMMRRLQG 292
>gi|402471502|gb|EJW05219.1| DNA repair protein RAD51 [Edhazardia aedis USNM 41457]
Length = 333
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 107/259 (41%), Gaps = 43/259 (16%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGK+Q C L++ L GG +G ++ID E TF +
Sbjct: 102 LDKLLNGGIECGSITEIFGEFRTGKSQLCHTLAVTCQLGFETGGGNGKCLFIDTEGTFRT 161
Query: 151 RRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
R++ + + + +++ + R+L+ +SE +
Sbjct: 162 ERLVSIAQRYSLDPQTVLDNVAYARAYNSDHQSRLLIQAAAMMSE--------------S 207
Query: 204 QVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
L+++DS AL G E A H L+ + ++ LA+ I +V+TNQV Q
Sbjct: 208 HYSLMIVDSAMALYRTDFSGRGELGARQIH-LARFLRMLLRLADEFGIAVVITNQVVAQV 266
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
+ L+ +K V G AHA T RL L G+ R +
Sbjct: 267 DGATSLFAADPKK----------------PVGGNIMAHASTTRLYLRKGRGETRICKIYD 310
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP P F I GI+
Sbjct: 311 SPCLPESEAVFAITEHGIA 329
>gi|310793292|gb|EFQ28753.1| hypothetical protein GLRG_03897 [Glomerella graminicola M1.001]
Length = 350
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 131/292 (44%), Gaps = 36/292 (12%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + ++R +E + + T K LD L GG+ G VTEL G
Sbjct: 78 LAEASKLVPMGFTTATEMHQRR--SELI--SITTGSKQLDTLLAGGIETGSVTELFGEFR 133
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + A+ F G++
Sbjct: 134 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAV-ANRF-------GLSG 185
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP----GVHEQRAPG 227
+E+ + + + + L++ + + + LL++DS AL G E +
Sbjct: 186 EEVLDNVAYARAYNSDHQLQLLQQAGAMMCETRFSLLIVDSATALYRTDFLGRGELSSRQ 245
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSH 286
H L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 246 TH-LAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK-------------- 290
Query: 287 IVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
V G AHA T R+ L + ++ R + SP P F IN GI
Sbjct: 291 --PVGGNIIAHASTTRISLRKGRAETRVAKIYDSPCLPESDCLFAINEDGIG 340
>gi|322698012|gb|EFY89786.1| DNA repair protein RAD51 [Metarhizium acridum CQMa 102]
Length = 348
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 133/306 (43%), Gaps = 34/306 (11%)
Query: 38 LMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCG 97
L ++ + + + L S++V F TA + ++R +E + + T K LD L G
Sbjct: 61 LEQIKGISEQKAQKILGEASKLVPMGFTTATEMHQRR--SELI--SITTGSKNLDTLLAG 116
Query: 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157
G+ G VTEL G TGK+Q C L++ LP GG +G +YID E TF R++ +
Sbjct: 117 GIETGSVTELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAV- 175
Query: 158 ASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
A+ F G++ +E+ + + + + L + + + + LLV+DS +L
Sbjct: 176 ANRF-------GLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLLVVDSATSL 228
Query: 217 VPGVHEQRAP---GQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQK 272
R Q L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 229 YRTDFCGRGELSNRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK 288
Query: 273 MDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTI 331
+ G AHA T R+ L+ G+ R + SP P F I
Sbjct: 289 ----------------PIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDTLFAI 332
Query: 332 NPSGIS 337
N GI
Sbjct: 333 NEDGIG 338
>gi|85116816|ref|XP_965126.1| DNA repair protein RAD51 [Neurospora crassa OR74A]
gi|2182133|dbj|BAA20366.1| MEI3 [Neurospora crassa]
gi|28926929|gb|EAA35890.1| DNA repair protein RAD51 [Neurospora crassa OR74A]
Length = 353
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 128/291 (43%), Gaps = 36/291 (12%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + ++R +E + + T K LD L GG+ G VTE+ G
Sbjct: 79 LAEASKLVPMGFTTATEMHQRR--SELI--SITTGSKNLDTLLAGGIETGSVTEIFGEFR 134
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + + G++
Sbjct: 135 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLL--------AVANRYGLSG 186
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP----GVHEQRAPG 227
+E+ + + + + L + + + + LL++DS +L G E +
Sbjct: 187 EEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFLGRGELSSRQ 246
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSH 286
H L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 247 TH-LAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK-------------- 291
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AHA T R+ L+ G+ R + SP P F IN GI
Sbjct: 292 --PIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDCLFAINEDGI 340
>gi|209946358|gb|ACI97410.1| spindle B [Drosophila melanogaster]
gi|209946362|gb|ACI97412.1| spindle B [Drosophila melanogaster]
gi|209946366|gb|ACI97414.1| spindle B [Drosophila melanogaster]
gi|209946370|gb|ACI97416.1| spindle B [Drosophila melanogaster]
gi|209946372|gb|ACI97417.1| spindle B [Drosophila melanogaster]
gi|209946374|gb|ACI97418.1| spindle B [Drosophila melanogaster]
gi|209946380|gb|ACI97421.1| spindle B [Drosophila melanogaster]
gi|209946382|gb|ACI97422.1| spindle B [Drosophila melanogaster]
gi|209946386|gb|ACI97424.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 105/258 (40%), Gaps = 39/258 (15%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKTQ L+LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
+IDS+ A+ ++ +H +L+ S A+ +V NQV
Sbjct: 211 IIDSVAAIFRLYNDYLERARHMRRLADALL-SYADKYNCAVVCVNQV------------- 256
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-----EAKSGQRFMNVEK----- 318
TR + LG WAH RL + + + G + + V K
Sbjct: 257 -----------ATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILY 305
Query: 319 SPTSPPLAFSFTINPSGI 336
SP +P I G+
Sbjct: 306 SPETPNDFAEXXITAEGV 323
>gi|14590064|ref|NP_142128.1| DNA repair and recombination protein RadB [Pyrococcus horikoshii
OT3]
gi|6225912|sp|O57859.1|RADB_PYRHO RecName: Full=DNA repair and recombination protein RadB
gi|3256505|dbj|BAA29188.1| 228aa long hypothetical DNA repair protein [Pyrococcus horikoshii
OT3]
Length = 228
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T +KGLD L GGV V+ ++ GP TGKT F +++ LL +G V Y+D
Sbjct: 13 LTTGVKGLDELLGGGVARRVILQVYGPFATGKTTFAMQVGLLN---------EGKVAYVD 63
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQ 202
E F+ R+ +M S+G+ E A + ++ +P L+E + K+K +++
Sbjct: 64 TEGGFSPERLAQMA--------RSRGLDPEKALSKFIIFEPMDLNEQRRVISKLK-TIVD 114
Query: 203 NQVKLLVIDSMEALVPGVHEQRAPGQH---PLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ L+V+DS+ A RA G L+ + ++ LA + ++V NQV S
Sbjct: 115 EKFSLVVVDSLTA------HYRAEGSKNYGELAKQLQVLQWLARRKNVAVIVINQVYHDS 168
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
+ S L P + KD R+ V V
Sbjct: 169 NSNS-LRPIAEHTLGYRTKDILRFEKLRVGV 198
>gi|156937796|ref|YP_001435592.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis
KIN4/I]
gi|166218760|sp|A8AB83.1|RADA_IGNH4 RecName: Full=DNA repair and recombination protein RadA
gi|156566780|gb|ABU82185.1| DNA repair and recombination protein RadA [Ignicoccus hospitalis
KIN4/I]
Length = 327
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 147/354 (41%), Gaps = 55/354 (15%)
Query: 4 KLISEMRLPKSIANIFAARNITTAK---------DALSLTELELMKLLDVELSEVRSALA 54
++ +E + P S+A + T AK +AL++ E + + + L+ + +
Sbjct: 3 QVATEEKRPTSVAELPGVGPSTAAKLIDAGYGTIEALAVATPEELVAIGIPLTTAQKIIR 62
Query: 55 LVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTG 114
+++ F+TA + +R + T K LD L GG+ +TE G G+G
Sbjct: 63 AARQMLDIRFRTAKEVKLERMNLRKI----TTGSKNLDDLLGGGIETKTITEFFGEFGSG 118
Query: 115 KTQFCLKLSLLAALPAHYGGLDGG-----VIYIDVESTFTSRRMIEMGASSFPEIFHSKG 169
K+Q C + S+ LP GGL G +Y+D E TF R+ +M +
Sbjct: 119 KSQLCHQASVNVQLPLEQGGLSEGDKVAKAVYVDTEGTFRWERIEQMAKCLGLD------ 172
Query: 170 MAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRA 225
++ I ++ + +E++ + + VKL+V+DS+ A PG E A
Sbjct: 173 -PDQVMDNIYYIRAVNSDHQMAIVEELFNLVPKENVKLIVVDSVTSHFRAEYPG-RENLA 230
Query: 226 PGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRY 283
Q L+ H+ + LAE +++TNQV RP D D T+
Sbjct: 231 VRQQKLNKHLHQLGKLAEVYNTAVIITNQVMARP----------------DVFYGDPTQ- 273
Query: 284 YSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
AV G HA +R+ L +A+ +R V +P P F I GI
Sbjct: 274 -----AVGGHVLYHAPGVRVQLKKARGNKRIARVVDAPHLPEAEAVFAITDCGI 322
>gi|209946368|gb|ACI97415.1| spindle B [Drosophila melanogaster]
gi|209946390|gb|ACI97426.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 102/245 (41%), Gaps = 39/245 (15%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKTQ L+LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
+IDS+ A+ ++ +H +L+ S A+ +V NQV
Sbjct: 211 IIDSVAAIFRLYNDYLERARHMRRLADALL-SYADKYNCAVVCVNQV------------- 256
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-----EAKSGQRFMNVEK----- 318
TR + LG WAH RL + + + G + + V K
Sbjct: 257 -----------ATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILY 305
Query: 319 SPTSP 323
SP +P
Sbjct: 306 SPETP 310
>gi|448726994|ref|ZP_21709372.1| DNA repair and recombination protein RadA [Halococcus morrhuae DSM
1307]
gi|445792363|gb|EMA42969.1| DNA repair and recombination protein RadA [Halococcus morrhuae DSM
1307]
Length = 344
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 98/229 (42%), Gaps = 41/229 (17%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E R G L ++ +D L GGV +TE+ G G GK+Q +LS
Sbjct: 67 FETGADVLEHRNEI----GKLSWQVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLS 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP YGGL+G I+ID E TF R+ EM P + +A M R + P
Sbjct: 123 VNVQLPNEYGGLEGSAIFIDSEDTFRPERIAEM-VHGLP----NDAIAAAMDQREIEGSP 177
Query: 184 TS---LSEFTES-LEKIKVSLLQNQ-----------------------VKLLVIDSMEAL 216
S + EF ES L+ I V+ N V+L+ IDS+ A
Sbjct: 178 ESDEAMDEFIESILDNIHVAKAFNSNHQILLAQKAQDIASEHEDSEWPVRLVCIDSLTAH 237
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSH 260
+ R A Q L+ H+ I + VVTNQV P S+
Sbjct: 238 FRAEYVGRGELAQRQQKLNKHLHDIDKVGNLFNAATVVTNQVASNPDSY 286
>gi|339243031|ref|XP_003377441.1| DNA repair protein RAD51 [Trichinella spiralis]
gi|316973755|gb|EFV57314.1| DNA repair protein RAD51 [Trichinella spiralis]
Length = 592
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145
T + LD AL GG+ G +TE GP+G GKTQ CL+L++ +P GG+DG VIYID E
Sbjct: 110 TFCESLDNALGGGIQLGQMTECAGPSGIGKTQLCLQLAVDVCIPKVLGGVDGEVIYIDTE 169
Query: 146 STFTSRRMIEMGASSFPEIFHSKGMAQ 172
F +R+ ++ ++ + H + +A+
Sbjct: 170 GAFKYKRLNQIAEAA---VSHCRRVAE 193
>gi|25012918|gb|AAN71546.1| RH24133p [Drosophila melanogaster]
Length = 284
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 107/259 (41%), Gaps = 29/259 (11%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
L T K LD L GG+ G +TE+ G GKTQ C L++ LP G +G +YI
Sbjct: 41 QLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKCMYI 100
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E+TF R+ + K E+ + + + + T+ ++ L +
Sbjct: 101 DTENTFRPERLAAIAQ-------RYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFE 153
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ LL++DS AL + R A Q+ L + ++ LA+ + +V+TNQV
Sbjct: 154 SRYALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASL 213
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
+ F +K + G AH+ T RL L G+ R +
Sbjct: 214 DGAPGM--FDAKK----------------PIGGHIMAHSSTTRLYLRKGKGETRICKIYD 255
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP P F I P GI
Sbjct: 256 SPCLPESEAMFAILPDGIG 274
>gi|358057228|dbj|GAA96837.1| hypothetical protein E5Q_03510 [Mixia osmundae IAM 14324]
Length = 342
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 111/259 (42%), Gaps = 29/259 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TEL G TGK+Q C +L++ LP GG +G +YID
Sbjct: 103 ITTGSKNLDNVLGGGIETGAITELFGEFRTGKSQICHQLAVTCQLPIDMGGGEGKCLYID 162
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + E + G +E+ + + + L + + ++
Sbjct: 163 TEGTFRPVRLL-----AIAERYGMNG--EEVLDNVAYARAYNADHQQSLLVEASAMMAES 215
Query: 204 QVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LL++DS +L G E A H L+ + + LA+ I +V+TNQV Q
Sbjct: 216 RFCLLIVDSCTSLYRTDFAGRGELSARQTH-LARFLRSLLRLADEYGIAVVITNQVVAQV 274
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEK 318
+ + +K + G AHA T R+ L +A+ R +
Sbjct: 275 DNAPGGFNPDPKK----------------PIGGNIIAHASTTRVHLKKARGTSRSAKIYD 318
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP P F I GIS
Sbjct: 319 SPCLPETEGKFAIEADGIS 337
>gi|162605684|ref|XP_001713357.1| DNA repair protein Rad51 homolog [Guillardia theta]
gi|13794289|gb|AAK39666.1|AF083031_23 DNA repair protein Rad51 homolog [Guillardia theta]
Length = 331
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 110/258 (42%), Gaps = 28/258 (10%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+L + K LD L GG+ G +TE+ G TGKTQ C L + L GG +G +YI
Sbjct: 93 YLTSGSKELDKILGGGIETGSITEVFGEFRTGKTQLCHTLCVTCQLSVSKGGGEGRALYI 152
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E TF R++ S + F+ Q++ I + + E L + + +
Sbjct: 153 DTEGTFRPERIV-----SIADRFNLN--RQDVLDNIAYARAYNTDHQLELLNQASALMSE 205
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ LLVIDS +L + R A Q ++ + + LA+ + +++TNQV Q
Sbjct: 206 SRYALLVIDSATSLYRTDYTGRGELASRQQHMARFLRSLQRLADEFGVAVLITNQVIAQV 265
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
S + D + V G AHA RL L+ G R +
Sbjct: 266 DGNSSF-----------MTDPKK------PVGGNIVAHASQTRLYLKKGKGVNRICKIYD 308
Query: 319 SPTSPPLAFSFTINPSGI 336
SP P F+I+ +GI
Sbjct: 309 SPNLPNGECLFSISEAGI 326
>gi|161528894|ref|YP_001582720.1| DNA repair and recombination protein RadA [Nitrosopumilus maritimus
SCM1]
gi|160340195|gb|ABX13282.1| DNA repair and recombination protein RadA [Nitrosopumilus maritimus
SCM1]
Length = 388
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 109/261 (41%), Gaps = 36/261 (13%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T LD GG+ +TE+ G G GKTQF +S++ GGL+G V+Y
Sbjct: 86 GKITTGTNCLDTLFDGGLETQALTEVYGEFGCGKTQFAHTMSVMVQKTKEEGGLEGSVLY 145
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
ID E+TF R++ + + + +++ I+V + + + T LE+ +
Sbjct: 146 IDTENTFRPERIVSIAQAHEMD-------PEKVLDNIIVARAYNSAHQTLILEEAGPIIE 198
Query: 202 QNQVKLLVIDSM------EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
+N +KL+V DS E L G R Q L+ + L++ +AE + TNQV
Sbjct: 199 ENNIKLIVADSAVGLFRSEYLGRGTLSNR---QQKLNHFVHLLSRIAETYNCAAIATNQV 255
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMN 315
+ D D TR + G AH T R+ + +R
Sbjct: 256 --------------MASPDVFFGDPTR------PIGGNVVAHTSTYRIYFKKSGKKRIAR 295
Query: 316 VEKSPTSPPLAFSFTINPSGI 336
+ SP P F + +G+
Sbjct: 296 MVDSPHHPEEEVIFALGEAGV 316
>gi|302496969|ref|XP_003010485.1| hypothetical protein ARB_03186 [Arthroderma benhamiae CBS 112371]
gi|291174028|gb|EFE29845.1| hypothetical protein ARB_03186 [Arthroderma benhamiae CBS 112371]
Length = 257
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 111/258 (43%), Gaps = 28/258 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 11 ITTGSKQLDTLLAGGIETGSITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 70
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + A + + +E+ + + + + L + + +
Sbjct: 71 TEGTFRPVRLLAV-AQRYGLV------GEEVLDNVAYARAYNSDHQLQLLNQASQMMCET 123
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-S 259
+ LL++DS +L R + Q+ L+ + + LA+ + +V+TNQV Q
Sbjct: 124 RFSLLIVDSATSLYRTDFSGRGELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQVD 183
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 184 GGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRICKIYD 227
Query: 319 SPTSPPLAFSFTINPSGI 336
SP P F IN GI
Sbjct: 228 SPCLPESDCLFAINEDGI 245
>gi|402086982|gb|EJT81880.1| DNA repair protein rhp51 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 353
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 130/292 (44%), Gaps = 36/292 (12%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + ++R +E + + T K LD L GGV G VTEL G
Sbjct: 79 LAEASKLVPMGFTTATEMHQRR--SELI--SITTGSKNLDTLLAGGVETGSVTELFGEFR 134
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + A+ F G++
Sbjct: 135 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAV-ANRF-------GLSG 186
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP----GVHEQRAPG 227
+E+ + + + + L + + + + LL++DS +L G E +
Sbjct: 187 EEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFLGRGELSSRQ 246
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSH 286
H L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 247 TH-LAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK-------------- 291
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T R+ L+ G+ R + SP P F I +GI
Sbjct: 292 --PIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDCLFAIQENGIG 341
>gi|116206996|ref|XP_001229307.1| hypothetical protein CHGG_02791 [Chaetomium globosum CBS 148.51]
gi|88183388|gb|EAQ90856.1| hypothetical protein CHGG_02791 [Chaetomium globosum CBS 148.51]
Length = 350
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 36/292 (12%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + ++R +E + + T K LD L GG+ G VTEL G
Sbjct: 78 LAEASKLVPMGFTTATEMHQRR--SELI--SITTGSKQLDTLLAGGIETGSVTELFGEFR 133
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + + G++
Sbjct: 134 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLL--------AVANRYGLSG 185
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP----GVHEQRAPG 227
+E+ + + + + L + + + + LLV+DS +L G E +
Sbjct: 186 EEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLLVVDSATSLYRTDFLGRGELNSRQ 245
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSH 286
H L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 246 TH-LAKFLRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK-------------- 290
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AH+ T R+ L+ G+ R + SP P F IN GI
Sbjct: 291 --PIGGNIMAHSSTTRISLKKGRGETRIAKIYDSPCLPEGDALFAINEDGIG 340
>gi|66809625|ref|XP_638535.1| hypothetical protein DDB_G0284507 [Dictyostelium discoideum AX4]
gi|74897050|sp|Q54PJ7.1|RA51C_DICDI RecName: Full=DNA repair protein RAD51 homolog 3
gi|60467144|gb|EAL65180.1| hypothetical protein DDB_G0284507 [Dictyostelium discoideum AX4]
Length = 381
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 111/264 (42%), Gaps = 43/264 (16%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
+D L GG P +TE+ G G GKT +L + ++P GG+ G IYID E +++
Sbjct: 71 IDQMLNGGTPLKKITEICGVPGIGKTNMAFQLLVNTSIPFDLGGVQGKAIYIDTEGSYSC 130
Query: 151 RRMIEMG---ASSFPEIFHSKGMAQ--------EMAGRILVLQPTSLSEFTESLEKIKVS 199
+R+ EM + + M Q + I + E + ++ +
Sbjct: 131 QRVREMATHLVNHLECVLLKNPMTQTTYIPTVETVLNSIYYYRVYHYIEIISLIHQLPLF 190
Query: 200 LLQNQ-VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFS---RIPIVVTNQV 255
L +N+ VKL+V+DS+ P + + G S +SL +L + + +VV NQV
Sbjct: 191 LEKNKDVKLIVVDSITY--PFRCDFKDMGLRTRSL-LSLAQNLMNIATRYNLAVVVMNQV 247
Query: 256 RPQ---SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQR 312
+ + ES L P+ LG W H T R+VL K QR
Sbjct: 248 TTKISPNQKESILVPY----------------------LGESWTHICTYRMVLFWKQKQR 285
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
F ++ KSP+ F I GI
Sbjct: 286 FCHLYKSPSFKSCFTPFDIVEYGI 309
>gi|24651285|ref|NP_733342.1| spindle A, isoform B [Drosophila melanogaster]
gi|23172653|gb|AAN14213.1| spindle A, isoform B [Drosophila melanogaster]
Length = 279
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 107/259 (41%), Gaps = 29/259 (11%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
L T K LD L GG+ G +TE+ G GKTQ C L++ LP G +G +YI
Sbjct: 41 QLSTGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGKCMYI 100
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E+TF R+ + K E+ + + + + T+ ++ L +
Sbjct: 101 DTENTFRPERLAAIAQ-------RYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFE 153
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ LL++DS AL + R A Q+ L + ++ LA+ + +V+TNQV
Sbjct: 154 SRYALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASL 213
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
+ F +K + G AH+ T RL L G+ R +
Sbjct: 214 DGAPGM--FDAKK----------------PIGGHIMAHSSTTRLYLRKGKGETRICKIYD 255
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP P F I P GI
Sbjct: 256 SPCLPESEAMFAILPDGIG 274
>gi|308809359|ref|XP_003081989.1| Meiotic recombination protein DMC1, putative (ISS) [Ostreococcus
tauri]
gi|116060456|emb|CAL55792.1| Meiotic recombination protein DMC1, putative (ISS) [Ostreococcus
tauri]
Length = 371
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 129/294 (43%), Gaps = 38/294 (12%)
Query: 51 SALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGP 110
SAL ++ E F TA E+R H+ +DA L GG +TE+ G
Sbjct: 106 SALKMLPESESGGFITAAEDCERRKGVLHI----TCGAAAVDAILNGGFETRAITEIFGE 161
Query: 111 AGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGM 170
GKTQ C L++ +P GG V +ID E+TF S R+ E A F G+
Sbjct: 162 WRCGKTQICHTLAVTTQMPIEMGGGCSKVAWIDTENTFRSDRL-EAIADRF-------GL 213
Query: 171 AQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---AP 226
++ ++V + ++ + ++L I + + KLL++DS+ A+ + R +
Sbjct: 214 DRDAVLSNVMVARVDTVDQMMQALIAIGAKMAEEPFKLLIVDSIMAIFRVDYVARGELSE 273
Query: 227 GQHPLSWHISLITSLAEFSRIPIVVTNQVR--PQSHDESCLYPFQVQKMDRILKDRTRYY 284
Q L+ +S + LAE + +V+TNQV+ P + + P +
Sbjct: 274 RQQTLNQFLSRLRKLAEEFNVAVVLTNQVQSDPGGMAFAGVEP------------KKPIG 321
Query: 285 SHIVAVLGFHWAHAVTIRL-VLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
H++ AHA TIRL V + ++ R + V + PT F I G++
Sbjct: 322 GHVL-------AHASTIRLQVRKGRAEARVIKVLQGPTLKEDEAEFQITEGGVA 368
>gi|353236570|emb|CCA68562.1| related to DNA repair protein RAD51 [Piriformospora indica DSM
11827]
Length = 339
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 27/258 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 98 ITTGSKQLDTLLGGGIETGSITELFGEFRTGKSQICHTLAVTCQLPTSMGGGEGKCLYID 157
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + E + G +E+ + + + + L + ++
Sbjct: 158 TEGTFRPVRLL-----AVAERYGLNG--EEVLDNVAYARAYNADHQQQLLVTASALMAES 210
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ LL++DS AL R + Q L + + LA+ I +VVTNQV
Sbjct: 211 RFALLIVDSCTALYRTDFNGRGELSARQGHLGKFLRTLLRLADEYGIAVVVTNQVMSSPD 270
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKS 319
+ ++ +K + G AHA T RL L G R + S
Sbjct: 271 AAAAMFAGNDKK----------------PIGGNIMAHASTTRLQLRKGRGNTRVCKIYDS 314
Query: 320 PTSPPLAFSFTINPSGIS 337
P P F I GI
Sbjct: 315 PCLPESEAQFAILAGGIG 332
>gi|410916047|ref|XP_003971498.1| PREDICTED: DNA repair protein XRCC3-like [Takifugu rubripes]
Length = 271
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 4/152 (2%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLM 71
P+ A + AR + + +D L ++ LEL + + S+V+ LA + C P + ++
Sbjct: 10 PRIAAGVRRAR-LRSPRDVLCVSALELQTITGLSPSDVQQLLA-TAAAACRPHRPVPAVL 67
Query: 72 EQRAATEHL--GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALP 129
R L G L ++ L GG+P G +TEL G +G GKTQ L+L L P
Sbjct: 68 LHRGECPRLEPGLRLGVGCVVINELLRGGLPVGRITELSGQSGAGKTQLALQLCLCVQYP 127
Query: 130 AHYGGLDGGVIYIDVESTFTSRRMIEMGASSF 161
YGGLD G +YI E++F RR+ ++ +
Sbjct: 128 TDYGGLDSGAVYICTENSFPIRRLQQLVTDQY 159
>gi|430812109|emb|CCJ30445.1| unnamed protein product [Pneumocystis jirovecii]
Length = 353
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 132/315 (41%), Gaps = 29/315 (9%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T L K+ ++V ++ ++ PPFQTA+ + R ++ T K DA
Sbjct: 54 TRRNLSKIKGFSDAKVDKLKEIIQKLCPPPFQTAMEVSSFRRRV----NYISTGSKQFDA 109
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+ +TE+ G GKTQ + + LP GG +G Y+D E TF R+
Sbjct: 110 MLGGGIQSMSITEVFGEFRCGKTQISHTMCVTCQLPREMGGAEGKAAYLDTEGTFRPDRI 169
Query: 154 IEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDS 212
+ A + A++ ILV + + + + K+ ++ + +LL++DS
Sbjct: 170 KSIAARFGVD-------AEQAMNNILVGRAFNSEHQMDLINKMCTIFSEDGRYRLLIVDS 222
Query: 213 MEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQ-VRPQSHDESCLYPF 268
+ AL + R + Q L+ +S + +AE I + +TNQ L
Sbjct: 223 IMALFRVDYSGRGELSERQQKLNVMLSRLNRIAEEYNIAVFLTNQEYFYLIIYVLYLIII 282
Query: 269 QVQK-----MDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTS 322
QVQ + DR H++ AHA R++L G +R ++ SP
Sbjct: 283 QVQADPGATLMFASNDRKPVGGHVL-------AHASATRILLRKGRGEERVAKIQDSPDM 335
Query: 323 PPLAFSFTINPSGIS 337
P ++TI GI
Sbjct: 336 PEAECTYTIKAGGID 350
>gi|397652265|ref|YP_006492846.1| DNA repair and recombination protein RadB [Pyrococcus furiosus
COM1]
gi|13878673|sp|P81415.1|RADB_PYRFU RecName: Full=DNA repair and recombination protein RadB
gi|2967439|dbj|BAA25166.1| unnamed protein product [Pyrococcus furiosus DSM 3638]
gi|3560539|gb|AAC34999.1| recombinase [Pyrococcus furiosus DSM 3638]
gi|393189856|gb|AFN04554.1| DNA repair and recombination protein RadB [Pyrococcus furiosus
COM1]
Length = 225
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 27/203 (13%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T +KGLD L GGV GV+ ++ GP TGKT F +++ LL +G V Y+D
Sbjct: 7 LTTGVKGLDELLGGGVAKGVILQVYGPFATGKTTFAMQVGLLN---------EGKVAYVD 57
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E F+ R+ +M S ++ ++ + ++ +P L+E + + ++K +++
Sbjct: 58 TEGGFSPERLAQMAESRNLDV-------EKALEKFVIFEPMDLNEQRQVIARLK-NIVNE 109
Query: 204 QVKLLVIDSMEALVPGVHEQRAPGQH---PLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ L+V+DS A RA G LS + ++ +A + ++V NQV S+
Sbjct: 110 KFSLVVVDSFTA------HYRAEGSREYGELSKQLQVLQWIARRKNVAVIVVNQVYYDSN 163
Query: 261 DESCLYPFQVQKMDRILKDRTRY 283
L P + KD R+
Sbjct: 164 S-GILKPIAEHTLGYKTKDILRF 185
>gi|407465361|ref|YP_006776243.1| DNA repair and recombination protein RadA [Candidatus
Nitrosopumilus sp. AR2]
gi|407048549|gb|AFS83301.1| DNA repair and recombination protein RadA [Candidatus
Nitrosopumilus sp. AR2]
Length = 395
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 116/281 (41%), Gaps = 34/281 (12%)
Query: 59 IVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF 118
++ F +A + + R + G + T LD GG+ +TE+ G G GKTQF
Sbjct: 67 LIAKHFTSATEIYKHRQSI----GKITTGTNCLDTLFDGGIETQALTEVYGEFGCGKTQF 122
Query: 119 CLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI 178
+S++ GGL+G V+YID E+TF R++ + + + +++ I
Sbjct: 123 AHTMSVMVQKSKEEGGLEGSVLYIDTENTFRPERIVSIAQAHDMD-------PEKVLDNI 175
Query: 179 LVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQHPLSWHI 235
+V + + + LE+ + +N VKL++ DS L + R Q L+ +
Sbjct: 176 IVARAYNSAHQVLILEEAGPVIEENNVKLIIADSAVGLFRAEYLGRGTLSVRQQKLNHFV 235
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHW 295
L++ +AE + TNQV + D D TR + G
Sbjct: 236 HLLSRIAETYNCAAIATNQV--------------MASPDVFFGDPTR------PIGGNVV 275
Query: 296 AHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
AH T R+ + +R + SP P F + +G+
Sbjct: 276 AHTSTYRIYFKKSGKKRIARMVDSPHHPEEEVIFALGEAGV 316
>gi|355570859|ref|ZP_09042129.1| DNA repair and recombination protein radA [Methanolinea tarda
NOBI-1]
gi|354826141|gb|EHF10357.1| DNA repair and recombination protein radA [Methanolinea tarda
NOBI-1]
Length = 323
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 133/313 (42%), Gaps = 45/313 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIV-CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAAL 95
EL + ++ S + + E+V F+T + EQR L +P LDA L
Sbjct: 40 ELAETAEIGESTAKKMIKAAREMVDLGGFRTGKDVFEQRKEVRKLKMRVPE----LDALL 95
Query: 96 CGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIE 155
GG+ +TEL G G+GK+Q + ++ LP GGL G I+ID E+TF R+ +
Sbjct: 96 GGGLETQAITELYGEFGSGKSQVAHQAAVNVQLPEEEGGLMGSAIFIDTENTFRPERIEQ 155
Query: 156 M----GASSFPEIFHSK---GMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLL 208
M G + PE F A ++L++ E +++K S + V+L+
Sbjct: 156 MVLGLGIDADPEEFLENIHVARAHTSDHQMLMMDSAR-----EKAQELKDS--ERPVRLI 208
Query: 209 VIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+IDS+ A + R A Q L+ H+ + + + +VTNQV
Sbjct: 209 IIDSLTAHFRAEYAGRGTLAARQQKLNRHLHDLFRIVDEHNAVGLVTNQV---------- 258
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHW-AHAVTIRLVL-EAKSGQRFMNVEKSPTSP 323
L + ++ +G + H T R+ L ++K G+R + SP P
Sbjct: 259 -----------LSNPAVFFGDPTKPIGGNIVGHTATFRIYLRKSKGGKRIARLVDSPNLP 307
Query: 324 PLAFSFTINPSGI 336
+F + SG+
Sbjct: 308 EGEAAFMVEESGL 320
>gi|10944745|emb|CAC14091.1| RAD51C protein [Arabidopsis thaliana]
Length = 363
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 117/268 (43%), Gaps = 35/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T LD L GG+ VTE+ G G GKTQ ++LS+ +P GGL G IYI
Sbjct: 104 RITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYI 163
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKG-MAQEMAGRILVLQPTSLSE---------FTES 192
D E +F +R +++ + ++ G M + + ++P + E +TE
Sbjct: 164 DTEGSFMVKRALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQ 223
Query: 193 LEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ + K VK++++DS+ ++ A LS LA+ +
Sbjct: 224 IALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLAQRTRVLSEMALKFMKLAKKFSLA 283
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + + S FQ + LG W+H+ T R++L
Sbjct: 284 VVLLNQVTTKFSEGS----FQ-----------------LALALGDSWSHSCTNRVILYWN 322
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R+ ++KSP+ P + S+T+ G+
Sbjct: 323 GDERYAYIDKSPSLPSASASYTVTSRGL 350
>gi|209946402|gb|ACI97432.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 103/257 (40%), Gaps = 39/257 (15%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKTQ +LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLXQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
+IDS+ A+ ++ +H +L+ S A+ +V NQV
Sbjct: 211 IIDSVAAIFRLYNDYLERARHMRRLADALL-SYADKYNCAVVCVNQV------------- 256
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA-----KSGQRFMNVEK----- 318
TR + LG WAH RL + + G + + V K
Sbjct: 257 -----------ATRDGQDEIPCLGLQWAHLGRTRLRVSRVPXXHRMGDQLITVRKLEILY 305
Query: 319 SPTSPPLAFSFTINPSG 335
SP +P F I G
Sbjct: 306 SPETPNDFAEFLITAEG 322
>gi|18976393|ref|NP_577750.1| DNA repair and recombination protein RadB [Pyrococcus furiosus DSM
3638]
gi|18891919|gb|AAL80145.1| recombinase [Pyrococcus furiosus DSM 3638]
Length = 235
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 27/203 (13%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T +KGLD L GGV GV+ ++ GP TGKT F +++ LL +G V Y+D
Sbjct: 17 LTTGVKGLDELLGGGVAKGVILQVYGPFATGKTTFAMQVGLLN---------EGKVAYVD 67
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E F+ R+ +M S ++ ++ + ++ +P L+E + + ++K +++
Sbjct: 68 TEGGFSPERLAQMAESRNLDV-------EKALEKFVIFEPMDLNEQRQVIARLK-NIVNE 119
Query: 204 QVKLLVIDSMEALVPGVHEQRAPGQH---PLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ L+V+DS A RA G LS + ++ +A + ++V NQV S+
Sbjct: 120 KFSLVVVDSFTA------HYRAEGSREYGELSKQLQVLQWIARRKNVAVIVVNQVYYDSN 173
Query: 261 DESCLYPFQVQKMDRILKDRTRY 283
L P + KD R+
Sbjct: 174 S-GILKPIAEHTLGYKTKDILRF 195
>gi|66822135|ref|XP_644422.1| hypothetical protein DDB_G0273611 [Dictyostelium discoideum AX4]
gi|66822947|ref|XP_644828.1| hypothetical protein DDB_G0273139 [Dictyostelium discoideum AX4]
gi|60472545|gb|EAL70496.1| hypothetical protein DDB_G0273611 [Dictyostelium discoideum AX4]
gi|60472838|gb|EAL70787.1| hypothetical protein DDB_G0273139 [Dictyostelium discoideum AX4]
Length = 351
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 31/289 (10%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA ++V F+TA + + RA + T K D+ L GG+ G +TE+ G
Sbjct: 85 LAEAKKLVFMGFRTATDINKARAEIIQI----TTGSKEFDSLLDGGIESGSITEIFGEFR 140
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ 172
TGKTQ C L + L GG +G +YID E TF R++ + E ++ G +
Sbjct: 141 TGKTQICHTLCVTCQLGYSQGGGEGRALYIDTEGTFRPERLL-----AIAERYNLNG--E 193
Query: 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQH 229
+ + + + E L + + +++ LL++DS AL + R A Q
Sbjct: 194 HVLDNVSYARAYNSDHQLELLVQASAMMSESRYALLIVDSATALYRTDYAGRGELADRQK 253
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVA 289
L+ + + LA+ + +V+TNQV ++ +K
Sbjct: 254 HLARFLRTLQRLADEFGVAVVITNQVVASVDGAGGMFNPDPKK----------------P 297
Query: 290 VLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AH+ T RL L G+ R + SP+ P F I GIS
Sbjct: 298 IGGHIMAHSSTTRLSLRKGKGEMRICKIYDSPSLPESEKPFGIYSDGIS 346
>gi|219850727|ref|YP_002465159.1| DNA repair and recombination protein RadA [Methanosphaerula
palustris E1-9c]
gi|219544986|gb|ACL15436.1| DNA repair and recombination protein RadA [Methanosphaerula
palustris E1-9c]
Length = 327
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 118/287 (41%), Gaps = 44/287 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T + EQR L +P D L GGV +TE+ G G+GK+Q +++
Sbjct: 68 FKTGQDVFEQRKNVRKLKTFVPD----FDELLGGGVETQAITEVYGEFGSGKSQIVHQMA 123
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS-SFPEIFHSKGMAQEMAGRILVLQ 182
+ A LP GGL+G IYID E+TF R+ +M A FPE+
Sbjct: 124 VNAQLPESVGGLNGSAIYIDTENTFRPERIEQMVAGLDFPEL------------------ 165
Query: 183 PTSLSEFTESLEKIKVSLLQ-NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSL 241
L F E L I V+ + ++L+ID+ L + HP+ I +I SL
Sbjct: 166 --ELPSFEEFLNNIHVARAHTSDHQMLLIDTARELAAELKNS----DHPVK--IFIIDSL 217
Query: 242 -----AEFSRIPIVVTNQVRPQSHDESCLYPFQVQK-----MDRILKDRTRYYSHIVAVL 291
AE++ + T Q + H ++++ + ++ +
Sbjct: 218 TAHFRAEYAGRGTLATRQQKLNRHMHEFFKLIDEHNAVGLVTNQVMSNPAVFFGDPTKPI 277
Query: 292 GFHW-AHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G + H T RL L ++K G+R + SP P F + G+
Sbjct: 278 GGNIVGHTATFRLYLRKSKGGKRIARLVDSPNLPEGEAPFMVEEGGL 324
>gi|355767815|gb|EHH62665.1| hypothetical protein EGM_21063 [Macaca fascicularis]
Length = 346
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 147/346 (42%), Gaps = 39/346 (11%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 10 PRIIAAIKKAK-LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALHL 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+Q+ L LD+ L GG+P +TEL G + GKTQ L+L L P
Sbjct: 69 HQQKERFPAQHQRLSLGCPVLDSLLRGGLPLDGITELAGRSSVGKTQLALQLCLAVQFPR 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILVLQPT 184
+GGL+ +YI E F +R+ ++ A + P K +I +
Sbjct: 129 QHGGLEAXAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQK---LRFGSQIFIEHVA 185
Query: 185 SLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITSLA 242
+ E + +K+ V L + +L+VIDS+ A P E + P + + SL +L
Sbjct: 186 DVDALLECVNKKVPVLLSRGMARLVVIDSVAA--PFRCEFDSQASAPRARRLQSLGAALR 243
Query: 243 EFS---RIPIVVTNQVRPQSHDESCLY-PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
E S + P++ NQV ++ + P + + LG WA+
Sbjct: 244 ELSSAFQSPVLCINQVTEAMEEQGAAHGPLGF------------WDERVSPALGITWANQ 291
Query: 299 VTIRLVLEAKSGQ--------RFMNVEKSPTSPPLAFSFTINPSGI 336
+ +RL+ E + R + V +P PP + S+TI+ G+
Sbjct: 292 LLVRLLAERLREEEAALGCPARTLRVLFAPHLPPSSCSYTISAEGV 337
>gi|302660598|ref|XP_003021977.1| hypothetical protein TRV_03925 [Trichophyton verrucosum HKI 0517]
gi|291185899|gb|EFE41359.1| hypothetical protein TRV_03925 [Trichophyton verrucosum HKI 0517]
Length = 388
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 126/298 (42%), Gaps = 34/298 (11%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
L+E + L ++IV F TA + +RA + T K LD L GG+ G +T
Sbjct: 108 LTEGHTPLLQPAKIVPMGFTTATEMHSRRADLICI----TTGSKQLDTLLAGGIETGSIT 163
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
EL G TGK+Q C L++ LP GG +G +YID E TF R++ +
Sbjct: 164 ELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLL--------AVA 215
Query: 166 HSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR 224
G+ +E+ + + + + L + + + + LL++DS +L R
Sbjct: 216 QRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLLIVDSATSLYRTDFSGR 275
Query: 225 ---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDR 280
+ Q+ L+ + + LA+ + +V+TNQV Q S ++ +K
Sbjct: 276 GELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQVDGGPSAMFNPDPKK-------- 327
Query: 281 TRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L+ G+ R + SP P F IN GI
Sbjct: 328 --------PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEDGIG 377
>gi|448732182|ref|ZP_21714464.1| DNA repair and recombination protein RadA [Halococcus salifodinae
DSM 8989]
gi|445805094|gb|EMA55321.1| DNA repair and recombination protein RadA [Halococcus salifodinae
DSM 8989]
Length = 344
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 100/229 (43%), Gaps = 41/229 (17%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L ++ +D L GGV +TE+ G G GK+Q +LS
Sbjct: 67 FETGANVLERRNEI----GKLTWQVDEVDELLGGGVETQSITEVYGEFGAGKSQVTHQLS 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP YGGL+G I+ID E TF R+ +M P+ + +A M R + P
Sbjct: 123 VNVQLPNEYGGLEGSAIFIDSEDTFRPERIAQM-VRGLPD----EAIAAAMEVREIEGSP 177
Query: 184 TS---LSEFTES-LEKIKVSLLQNQ-----------------------VKLLVIDSMEAL 216
S + EF ES L+ I V+ N V+L+ IDS+ A
Sbjct: 178 DSEEAMDEFIESILDNIHVAKAFNSNHQILLAQKAQEIAAEHEESEWPVRLVCIDSLTAH 237
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSH 260
+ R A Q L+ H+ I + VVTNQV P S+
Sbjct: 238 FRAEYVGRGELAQRQQKLNKHLHDIDKVGNLYNAATVVTNQVASNPDSY 286
>gi|294891379|ref|XP_002773550.1| structural maintenance of chromosome, putative [Perkinsus marinus
ATCC 50983]
gi|239878722|gb|EER05366.1| structural maintenance of chromosome, putative [Perkinsus marinus
ATCC 50983]
Length = 952
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 62/109 (56%), Gaps = 10/109 (9%)
Query: 50 RSALALVSEIVCP-PFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELV 108
R+AL+L+ P FQ+A +EQR++ + P+ +DA L GGV G +TE+
Sbjct: 60 RAALSLI-----PMGFQSAGQYLEQRSSMIRISTGCPS----IDALLRGGVETGSITEVF 110
Query: 109 GPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157
G + +GK+QFC L + A LP GG G +YID E TF R+ +MG
Sbjct: 111 GESRSGKSQFCHALCVAAQLPVSQGGAAGRSLYIDTEGTFRPERLADMG 159
>gi|6714639|dbj|BAA89533.1| LIM15/DMC1 homolog [Coprinopsis cinerea]
Length = 345
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 141/329 (42%), Gaps = 36/329 (10%)
Query: 14 SIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQ 73
++ +I + I T + T +L+K+ + ++V +I F T + + ++
Sbjct: 42 NVQDITKSAAINTVSGVIMTTRRQLLKIKGMSEAKVEKIKEAAQKIHGSSFATGVEIQDK 101
Query: 74 RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYG 133
R + T K +D L GGV +TE+ G TGKTQ +S++A LP YG
Sbjct: 102 RKRVLVI----STGSKLVDGILGGGVMSQSITEVYGEYRTGKTQLAHTMSVVAQLPPEYG 157
Query: 134 GLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKG-MAQEMAGRILVLQPTSLSEFTES 192
G G V YID E TF R+ + + F G MA E IL + + E
Sbjct: 158 GAAGKVAYIDTEGTFRPDRI-----RAIADRFGVDGTMALE---NILYARAFNSEHQMEL 209
Query: 193 LEKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIP 248
+ + +++ +LL+IDS+ AL + R + Q L+ +S +T L+E I
Sbjct: 210 INECSARFAEDKDFRLLIIDSIMALFRVDYSGRGELSERQQKLAQMLSKLTKLSEEFNIA 269
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH-WAHAVTIRLVL-E 306
+++TNQV+ D F + +G H +HA R+ L +
Sbjct: 270 VLMTNQVQS---DPGATMTF--------------VAGGALKPIGGHILSHASATRIFLRK 312
Query: 307 AKSGQRFMNVEKSPTSPPLAFSFTINPSG 335
++ +R + SP P S+ ++ G
Sbjct: 313 GRAEERVAKLVDSPDRPESEASYKLDEGG 341
>gi|358396943|gb|EHK46318.1| hypothetical protein TRIATDRAFT_196126 [Trichoderma atroviride IMI
206040]
Length = 482
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
GLDAAL GGVP G +TE G +G GKTQF L L L LP + GL +YI ES T
Sbjct: 126 GLDAALGGGVPVGHITEFTGESGVGKTQFLLSLCLAVQLPPPH-GLGKQALYISTESGLT 184
Query: 150 SRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLE-KIKVSLLQNQVK 206
+RR+ +M G + E S G + G + P L LE ++ V L ++++
Sbjct: 185 TRRLAQMLQGNTILREAAES-GTPASLDGIHSAVTP-DLETQDHILEYQVPVLLSRHEIG 242
Query: 207 LLVIDSMEALVPGVHEQRAPGQH---------PLSWHISLITSLAEFSRIPIVVTNQV 255
+L+IDS+ A E++ G H L+ +L+ LA I +VV NQV
Sbjct: 243 ILIIDSVAANFRAEFERQ--GSHGSNMATRSAELTRLGALLRDLARRHNIAVVVANQV 298
>gi|156065967|ref|XP_001598905.1| hypothetical protein SS1G_00994 [Sclerotinia sclerotiorum 1980]
gi|154691853|gb|EDN91591.1| hypothetical protein SS1G_00994 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 325
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 118/274 (43%), Gaps = 38/274 (13%)
Query: 76 ATEHLGGH-------LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
A EH GH + T K LDA L GG ++E+ G GKTQ ++++A L
Sbjct: 73 AAEH--GHFRKKCIRISTGSKQLDACLNGGFQTMSISEVFGEFRCGKTQLAHTMAVIAQL 130
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSE 188
P + GG +G V YID E TF R+ E+ A F G+ + A +V +E
Sbjct: 131 PKNMGGAEGKVAYIDTEGTFRPERIAEI-AERF-------GVDPDQALENIVYARAQNTE 182
Query: 189 FT-ESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEF 244
E LE + + ++ +LL+IDS+ +L R + Q L+ + T +AE
Sbjct: 183 MQLELLEGLAQNFATDEYRLLIIDSIMSLYRSDFIGRGELSERQSALNAFLRRATQMAEE 242
Query: 245 SRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLV 304
+ + +TNQV S L+ R HI+ AHA T R++
Sbjct: 243 FNLVVFMTNQVMSDP-GASALFAG--------ADGRKPAGGHIL-------AHASTTRIL 286
Query: 305 LEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
L G +R + SP P ++ I GIS
Sbjct: 287 LRKGRGEERVAKIVDSPDCPECEATYIITTGGIS 320
>gi|405972678|gb|EKC37434.1| DNA repair protein XRCC3 [Crassostrea gigas]
Length = 309
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 109/271 (40%), Gaps = 50/271 (18%)
Query: 95 LCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMI 154
L GG+ +TE+ G + +GKTQFCL+L L LP GGL G YI E F S+R+
Sbjct: 64 LTGGILSQGITEISGESASGKTQFCLQLCLTVQLPPEEGGLAAGAAYICTEDAFPSKRLS 123
Query: 155 EMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESL-EKIKVSLLQNQVKLLVIDSM 213
+M S+ K I + L + +K+ L VKL+++DS+
Sbjct: 124 QM--ISYFRQRSEKRKQIPFGDNIFIEHVADLDSLNSCIHQKLPHLLSSGSVKLVIVDSV 181
Query: 214 EALVPGVHEQRAPGQHPLSWHI-SLITSLAEFSR---IPIVVTNQVRPQSHDESCLYPFQ 269
A+ +E + + S H+ SL SL S +PIV NQV
Sbjct: 182 AAVFRCDYELK--DMYKRSKHMASLAASLHRISSKYCLPIVCVNQV-------------- 225
Query: 270 VQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ------------------ 311
M I K + LG W++ +T RL L + +
Sbjct: 226 TDSMQSIGKKN-------IPALGLAWSNQITCRLSLSRTNREVDLPRIILKGSVIGGFPT 278
Query: 312 --RFMNVEKSPTSPPLAFSFTINPSGISLLT 340
R + V +P P L+ + I+ GI LT
Sbjct: 279 SIRTLEVVFAPNLPNLSLMYVIDQEGIKALT 309
>gi|241690305|ref|XP_002411756.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
gi|215504591|gb|EEC14085.1| DNA repair protein RAD51/RHP55, putative [Ixodes scapularis]
Length = 354
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 125/313 (39%), Gaps = 41/313 (13%)
Query: 2 ANKLISEMRLPKSIANIFAARNITTAKDALSLTELELM---KLLDVELSEVRS-----AL 53
N + + N +T A LT EL D E EV AL
Sbjct: 5 CNNAFKQCKALDKYYNALEVSRLTDAAAIFKLTRPELQLATGFTDAEADEVTKIVCQLAL 64
Query: 54 ALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGT 113
S C PF T+L ++ +T G + LD L GG+P VTEL G +G+
Sbjct: 65 TDSSGQKCSPF-TSLYDLDSGQSTLSFGCPI------LDRFLGGGLPTRGVTELSGESGS 117
Query: 114 GKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQE 173
GKTQFCL+LSL+A + G+ V+YI E F RR+ +M P +
Sbjct: 118 GKTQFCLQLSLMAQ-RSLGDGMPIYVVYICTEDRFPDRRLRQMQRELGP-------AGRS 169
Query: 174 MAGRILVLQPTSLSEFTESLEKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQRAPGQHPLS 232
++ +LV L+ LE SL + + V LLV+DS+ AL +EQ Q
Sbjct: 170 LSDNVLVSHVGELAMLMTCLETTLPSLRRTKRVGLLVLDSVAALFRSEYEQDQGIQRAAD 229
Query: 233 WHISLITSLAEFSR--IPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
L T L R + ++ NQV + ++P + V
Sbjct: 230 LR-KLGTVLDRIWRSGVAVLCVNQVTDLISSDHPMFPVT--------------GASCVPS 274
Query: 291 LGFHWAHAVTIRL 303
LG W + VT RL
Sbjct: 275 LGLTWGNVVTTRL 287
>gi|425783624|gb|EKV21464.1| DNA repair protein RAD51, putative [Penicillium digitatum Pd1]
Length = 344
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 110/260 (42%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 99 ITTGSKRLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 158
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 159 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 210
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LLV+DS +L R A Q L+ + + LA+ I +V+TNQV Q
Sbjct: 211 TRFSLLVVDSATSLYRTDFNGRGELASRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQV 270
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 271 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRICKIY 314
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN +GI
Sbjct: 315 DSPCLPESDCLFAINDNGIG 334
>gi|296815918|ref|XP_002848296.1| DNA repair protein RAD51 [Arthroderma otae CBS 113480]
gi|238841321|gb|EEQ30983.1| DNA repair protein RAD51 [Arthroderma otae CBS 113480]
Length = 350
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 110/260 (42%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 104 ITTGSKQLDTLLAGGIETGSITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 163
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 164 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 215
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LL++DS +L R + Q+ L+ + + LA+ + +V+TNQV Q
Sbjct: 216 TRFSLLIVDSATSLYRTDFSGRGELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQV 275
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 276 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRICKIY 319
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 320 DSPCLPESDCLFAINEDGIG 339
>gi|195446056|ref|XP_002070607.1| GK10943 [Drosophila willistoni]
gi|194166692|gb|EDW81593.1| GK10943 [Drosophila willistoni]
Length = 349
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 114/262 (43%), Gaps = 41/262 (15%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GG+ +TE+ G +G GKTQ L+L++ LP H GGL GV +I E F
Sbjct: 95 ALDRCTGGGIVTRGITEICGASGVGKTQLLLQLAVCVQLPLHLGGLARGVAFICTEDAFP 154
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMA--GRILVLQPTSLSEFTESLEKIKVSLLQNQ-VK 206
SRRM+E+ ++F ++ + + + V Q + E + L+Q +
Sbjct: 155 SRRMLEIS-----KVFEARYPKENLNFLANVFVEQQFEVKPLLECVSNRLPQLMQQHAIG 209
Query: 207 LLVIDSMEALVP--GVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESC 264
L++IDS+ A+ +++R L+ + + + A+ ++ NQ+ S
Sbjct: 210 LIIIDSVAAIFRLFTDYDERTRDMRRLA---NDLLTYADKYNCAVICINQMTSSS----- 261
Query: 265 LYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-----EAKSGQRFMNVEK- 318
+ D+ ++D + LG WAH RL++ + + G + + V K
Sbjct: 262 -----ATRDDKPMQD--------IPCLGLQWAHLGRTRLIVSKVPKQHRLGDQLITVRKL 308
Query: 319 ----SPTSPPLAFSFTINPSGI 336
SP +P F + G+
Sbjct: 309 EIMYSPETPNNVAEFLVTSEGV 330
>gi|326476219|gb|EGE00229.1| DNA repair protein RAD51 [Trichophyton tonsurans CBS 112818]
gi|326480838|gb|EGE04848.1| DNA repair protein RAD51 [Trichophyton equinum CBS 127.97]
Length = 349
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 110/260 (42%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 103 ITTGSKQLDTLLAGGIETGSITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 162
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 163 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 214
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LL++DS +L R + Q+ L+ + + LA+ + +V+TNQV Q
Sbjct: 215 TRFSLLIVDSATSLYRTDFSGRGELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQV 274
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 275 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRICKIY 318
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 319 DSPCLPESDCLFAINEDGIG 338
>gi|315053028|ref|XP_003175888.1| DNA repair protein RAD51 [Arthroderma gypseum CBS 118893]
gi|311341203|gb|EFR00406.1| DNA repair protein RAD51 [Arthroderma gypseum CBS 118893]
Length = 349
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 110/260 (42%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 103 ITTGSKQLDTLLAGGIETGSITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 162
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 163 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 214
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LL++DS +L R + Q+ L+ + + LA+ + +V+TNQV Q
Sbjct: 215 TRFSLLIVDSATSLYRTDFSGRGELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQV 274
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 275 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRICKIY 318
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 319 DSPCLPESDCLFAINEDGIG 338
>gi|16605548|emb|CAC86604.1| Rad51B protein [Physcomitrella patens]
gi|16605579|emb|CAC82997.1| Rad51B protein [Physcomitrella patens]
Length = 342
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 131/304 (43%), Gaps = 32/304 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+ + + ++V + ++V F +A + EQRA E + + T K D+ L
Sbjct: 62 DLVNIKGLSDAKVDKIIEAAGKLVPMGFTSAKQMHEQRA--ELI--QITTGSKEFDSILE 117
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G +GK+Q C L + LP GG +G +YID E TF +R++++
Sbjct: 118 GGIETGSITEIYGEFRSGKSQICHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 177
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
E + G Q++ + + + T+ L + + + + L+V+DS AL
Sbjct: 178 -----AEKYGLNG--QDVLDNVAYARAYNTDHQTKLLVEAASMMAETRFALMVVDSATAL 230
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R A Q L+ + +A+ I +VVTNQV Q + Q + +
Sbjct: 231 YRTDYSGRGELAARQFHLAKFLRGCQKMADEFGIAVVVTNQVVAQVDGSAMFNGPQFKPI 290
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRL-VLEAKSGQRFMNVEKSPTSPPLAFSFTIN 332
G AHA T RL V + + +R + V SP F I
Sbjct: 291 G-----------------GNIIAHASTTRLSVRKGRGEERVIKVVASPCLAEQEARFQIT 333
Query: 333 PSGI 336
G+
Sbjct: 334 NEGV 337
>gi|340383738|ref|XP_003390373.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Amphimedon queenslandica]
Length = 343
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 132/320 (41%), Gaps = 34/320 (10%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGH 83
I T K T +L + + ++V ++ F TAL ++R +
Sbjct: 48 ICTVKGIQMTTRKKLCNIKGISEAKVDKIKEAAGKLSSSDFLTALEYSDKR----RMVFR 103
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GG+ +TE+ G TGKTQ L + A LP G G V++ID
Sbjct: 104 IATGSQELDKLLGGGIESMAITEVFGEFRTGKTQLSHTLCVTAQLPGKNGYSGGKVVFID 163
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E+TF R+ E+ A F + H+ M +L + + E L+ + +
Sbjct: 164 TENTFRPDRLREI-ADRF-NLDHTA-----MLDNVLYARAYTSEHQMELLDCVAAKFHEE 216
Query: 204 Q--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
KLL++DS+ AL R A Q L+ +S + ++E + + VTNQ+
Sbjct: 217 PGVFKLLIVDSIMALFRVDFSGRGELADRQQKLAQMLSRLQKISEEYNVGVFVTNQM--- 273
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
+ D FQ I HI+ AHA T R+ L G+ R +
Sbjct: 274 TADPGATMSFQADPKKPI-------GGHIL-------AHASTTRISLRKGRGEVRIAKIY 319
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P +F I P GI+
Sbjct: 320 DSPDMPENEATFAITPGGIN 339
>gi|255940094|ref|XP_002560816.1| Pc16g04650 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585439|emb|CAP93135.1| Pc16g04650 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 344
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 110/259 (42%), Gaps = 28/259 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GGV G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 99 ITTGSKRLDTLLGGGVETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 158
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + A + + +E+ + + + + L + + +
Sbjct: 159 TEGTFRPVRLLAV-AQRYGLV------GEEVLDNVAYARAYNSDHQLQLLNQASQMMCET 211
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-S 259
+ LLV+DS +L R A Q L+ + + LA+ I +V+TNQV Q
Sbjct: 212 RFSLLVVDSATSLYRTDFNGRGELASRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVD 271
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 272 GGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRICKIYD 315
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 316 SPCLPEGDCLFAINEDGIG 334
>gi|327299920|ref|XP_003234653.1| DNA repair protein RAD51 [Trichophyton rubrum CBS 118892]
gi|326463547|gb|EGD89000.1| DNA repair protein RAD51 [Trichophyton rubrum CBS 118892]
Length = 349
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 110/260 (42%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 103 ITTGSKQLDTLLAGGIETGSITELFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 162
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 163 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 214
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LL++DS +L R + Q+ L+ + + LA+ + +V+TNQV Q
Sbjct: 215 TRFSLLIVDSATSLYRTDFSGRGELSSRQNHLARFMRTLQRLADEFGVAVVITNQVVAQV 274
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 275 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRICKIY 318
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 319 DSPCLPESDCLFAINEDGIG 338
>gi|332017004|gb|EGI57803.1| DNA repair protein XRCC3 [Acromyrmex echinatior]
Length = 247
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 38/262 (14%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T LDA L GG+P +T+L G AGTGKTQ L+L L LP GGL G IYI
Sbjct: 11 LTTGCSRLDAKLGGGIPCRGITQLYGAAGTGKTQLALQLCLTVQLPITAGGLGAGAIYIC 70
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLE-KIKVSLLQ 202
E+ F S+R+ ++ S EI + + ++ ILV + E L+ ++ V +
Sbjct: 71 TETAFPSKRLQQLLTKS--EIAKTHFVNGDV---ILVGHIATSEELVLCLQHRVPVLMNT 125
Query: 203 NQVKLLVIDSMEA--------LVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQ 254
++ LL+IDS+ A V +R+ G+ + L + + ++ NQ
Sbjct: 126 RKIGLLIIDSIAAPYRIEDWNDVLQCKTKRSIGRQ--------LHELCKNDDLCVICINQ 177
Query: 255 VRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFM 314
V V R++ + LG W+ +T + + R+
Sbjct: 178 VSA------------VIDGHRLISEGANEQP----ALGLAWSSMITTSIYFYRRLSSRYA 221
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
V + P + F F + SG+
Sbjct: 222 CVMLASHLPRITFQFEVEESGV 243
>gi|390594260|gb|EIN03673.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 534
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 138/325 (42%), Gaps = 48/325 (14%)
Query: 23 NITTAKDALSLTELELMKLLDVELSEVRSAL-ALVSEIVCP--PFQTALLLMEQRAATEH 79
N T D L ++ K V +SEV AL A+ +E+ P P Q A +
Sbjct: 26 NFKTVPDVLCPPPSDVAKRCRVHISEVNRALDAICTELRRPTHPLQDAF--------DDA 77
Query: 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGV 139
+ G + T LDA L GG+ G++ ++ G + GKTQ L+LSL P GGL G
Sbjct: 78 VSGTITTADDALDALLGGGIQTGMMWDVSGESAAGKTQLALQLSLAVQFPPEMGGLSGSS 137
Query: 140 IYIDVESTFTSRRMIEMGASSFPEIFHS-KGMAQEMAGRILVLQPTSLSEFTESLEKIKV 198
YI S + R++E+ A + P + + G+A I L T + + + +
Sbjct: 138 CYITTRSRLPTTRLLEI-AQNHPRLDPNICGLAD-----IHTLH-TPTPPMLQHVLDVVL 190
Query: 199 SLLQNQ---------VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLIT-------SLA 242
NQ V+L+VID++ L H + H L +I+ +LA
Sbjct: 191 PRFVNQISDRSGARPVRLVVIDTLTEL---FHSETRTTSHWLFERSKIISALSASLHALA 247
Query: 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHI---------VAVLGF 293
+ IVV N+V D L P + D + ++++R++ A LG
Sbjct: 248 SQRGLAIVVLNEVT-DVFDRDDLPPSREAGADVLYREQSRWFGRANSMPGEDRKQADLGL 306
Query: 294 HWAHAVTIRLVLEAKSGQRFMNVEK 318
W + V RL+L +R ++ ++
Sbjct: 307 VWTNQVNARLMLSRTGRRRHLDEDE 331
>gi|324512204|gb|ADY45060.1| DNA repair protein RAD51 A [Ascaris suum]
Length = 346
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 114/267 (42%), Gaps = 33/267 (12%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T + L+ L GG+ G +TE+ G TGK+Q C L+++ LP GG +G ++I
Sbjct: 109 QIETGSRELNRLLGGGIETGSITEVFGEFRTGKSQLCHTLAVMCQLPIDMGGAEGKCLWI 168
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E TF R++ + E + G Q++ ++ + + + L + + +
Sbjct: 169 DTEGTFRPERLL-----AVAERYKLSG--QDVLDNVVYARCYNTDHQMQLLVQASAMMAE 221
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ LLV+DS AL R A Q L + + LA+ + +V+TNQV Q
Sbjct: 222 SRYALLVVDSATALFRTDFSGRGELAARQMLLGKFMRTLLKLADEFGVAVVITNQVVAQV 281
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
++ ++ +K + G AHA T RL L G+ R +
Sbjct: 282 --DAGIFQGDTKK----------------PIGGNIIAHASTTRLYLRKGRGEARICKIYD 323
Query: 319 SPTSPPLAFSFTINPSGISLLTDDGTE 345
SP P F I GI DD E
Sbjct: 324 SPCLPESEAMFAITTQGI----DDTKE 346
>gi|149246169|ref|XP_001527554.1| DNA repair protein RAD51 [Lodderomyces elongisporus NRRL YB-4239]
gi|146447508|gb|EDK41896.1| DNA repair protein RAD51 [Lodderomyces elongisporus NRRL YB-4239]
Length = 362
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 108/264 (40%), Gaps = 41/264 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GG+ G +TE+ G TGK+Q C LS+ LP GG +G +YID
Sbjct: 121 LTTGSKQLDTLLGGGIETGSITEVFGEFRTGKSQLCHTLSVTCQLPIDMGGGEGKCLYID 180
Query: 144 VESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI 196
E TF R++ + + +++ E +L L ++E
Sbjct: 181 TEGTFRPNRLVSIAERYGLNANDCLDNVAYARAYNAEHQLNLLNLAAEMMAE-------- 232
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTN 253
++ LL++DS+ +L + R + Q ++ + + LA+ I +V+TN
Sbjct: 233 ------SRFSLLIVDSIMSLYRTDYAGRGELSARQTSVAKFMRTLQRLADEFGIAVVITN 286
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQR 312
QV Q S +Y +K + G AH+ T RL + ++ R
Sbjct: 287 QVVAQVDGMSGMYNPDPKK----------------PIGGNIIAHSSTTRLSFKKGRAETR 330
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
+ SP P F I GI
Sbjct: 331 ICKIYDSPCLPESECVFAIYEDGI 354
>gi|448488854|ref|ZP_21607453.1| DNA repair and recombination protein RadA [Halorubrum
californiensis DSM 19288]
gi|445695475|gb|ELZ47578.1| DNA repair and recombination protein RadA [Halorubrum
californiensis DSM 19288]
Length = 343
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 117/279 (41%), Gaps = 59/279 (21%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L ++ +D L GG+ +TE+ G G+GK+Q +++
Sbjct: 66 FETGATVLERREEI----GKLSWQIDEVDELLGGGIETQSITEVYGEFGSGKSQVTHQMA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP +GGLDGG I++D E TF R+ +M EI +A EM R + P
Sbjct: 122 VNVQLPPEHGGLDGGCIFVDSEDTFRPERIDDMVRGLDDEI-----LADEMERREIEGTP 176
Query: 184 T---SLSEFTES-LEKIKVSLLQNQ-----------------------VKLLVIDSMEAL 216
+ ++ E E+ L++I V+ N ++++ +DS+ A
Sbjct: 177 SDEEAMEELVEAFLDQIHVAKAFNSNHQILLAEKAKELAGEHEETEWPIRIVCVDSLTAH 236
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R A Q L+ H+ + + + I+VTNQV
Sbjct: 237 FRAEYVGRGELADRQQKLNKHLHDLMRIGDLFNTAILVTNQV--------------ASNP 282
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQR 312
D D T+ A+ G HA T R+ L G +
Sbjct: 283 DSYFGDPTQ------AIGGNILGHASTFRMYLRKSKGDK 315
>gi|45201197|ref|NP_986767.1| AGR101Cp [Ashbya gossypii ATCC 10895]
gi|44986051|gb|AAS54591.1| AGR101Cp [Ashbya gossypii ATCC 10895]
gi|374110017|gb|AEY98922.1| FAGR101Cp [Ashbya gossypii FDAG1]
Length = 333
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 135/335 (40%), Gaps = 51/335 (15%)
Query: 21 ARNITTAKDALSLTELELMKLL---DVELSEVRSALALVSEIVCPPFQTALLLMEQRAAT 77
A I + LS T L+K+ +V++ +V+ A + ++ P L + ++ A
Sbjct: 36 ASGIFSVNTVLSTTRRNLLKIKGFSEVKVEKVKEAAGKIIQVGFIPATVQLDIRKRVFA- 94
Query: 78 EHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDG 137
+ T K LD+ L GGV +TE+ G GKTQ L + A LP GG +G
Sbjct: 95 ------ISTGSKQLDSILGGGVMTMSITEVFGEFRCGKTQMSHTLCVTAQLPREMGGGEG 148
Query: 138 GVIYIDVESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT 190
V YID E TF R+ ++ A + + +++ + E
Sbjct: 149 KVAYIDTEGTFRPERIKQIAARYDLDPDACLENVSYARALNSEHQ--------------M 194
Query: 191 ESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRI 247
E +E++ L +LL++DS+ A + R Q L+ H+S + +AE +
Sbjct: 195 ELVEQLGQELASGDYRLLIVDSIMANFRVDYCGRGELNERQQKLNQHLSRLNRVAEEYNV 254
Query: 248 PIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA 307
+ +TNQV+ + +K V G AHA R++L
Sbjct: 255 AVFMTNQVQSDPGASALFASADGRK----------------PVGGHVLAHASATRILLRK 298
Query: 308 KSG-QRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
G +R ++ SP P + I GI+ D
Sbjct: 299 GRGEERVAKLQDSPDMPEKECVYVIGEKGITDADD 333
>gi|209946378|gb|ACI97420.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 103/258 (39%), Gaps = 39/258 (15%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKTQ L+LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
+IDS+ A+ ++ +H + S A+ +V NQV
Sbjct: 211 IIDSVAAIFRLYNDYLERARH-MRRLADAXXSYADKYNCAVVCVNQV------------- 256
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-----EAKSGQRFMNVEK----- 318
TR + LG WAH RL + + + G + + V K
Sbjct: 257 -----------ATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILY 305
Query: 319 SPTSPPLAFSFTINPSGI 336
SP +P I G+
Sbjct: 306 SPETPNDFAEXXITAEGV 323
>gi|189197611|ref|XP_001935143.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187981091|gb|EDU47717.1| DNA repair protein RAD51 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 341
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 133/312 (42%), Gaps = 41/312 (13%)
Query: 36 LELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEHLGGHLPTRLKGL 91
L++ ++++ +V+ A+ C P FQTA L + R + T K L
Sbjct: 56 LKIKGFSEIKVDKVKDAIGKCQVEYCTPSGGGFQTAHELGQHRKRVIKI----STGSKAL 111
Query: 92 DAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSR 151
DA L GG ++E+ G GKTQ +S++ LP GG +G V YI TF
Sbjct: 112 DAVLGGGFQTMSISEVFGEFRCGKTQLSHTMSVITQLPKDMGGAEGKVAYI---GTFRPE 168
Query: 152 RMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT-ESLEKIKVSLLQNQVKLLVI 210
R+ ++ A F G+ E A + SE E L K+ + N+ +LL+I
Sbjct: 169 RIAQI-AERF-------GVDPETAQDNITYARAVNSEHQMELLNKVAEFFVSNEYRLLII 220
Query: 211 DSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFS-RIPIVVTNQVRPQSHDESCLY 266
DS+ AL + R Q L+ +S +T +AE + +++TNQV+ S L+
Sbjct: 221 DSIMALFRVDYTGRGELNERQQKLNQFLSKLTHVAEAEFNVAVLLTNQVQSDP-GASALF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPL 325
R HI+ AHA R++L G +R ++ SP P
Sbjct: 280 AG--------ADGRKPIGGHIL-------AHASATRILLRKGRGEERVAKIQDSPDMPEK 324
Query: 326 AFSFTINPSGIS 337
++ I GI+
Sbjct: 325 EATYIITNGGIN 336
>gi|148642671|ref|YP_001273184.1| DNA repair and recombination protein RadB [Methanobrevibacter
smithii ATCC 35061]
gi|222445832|ref|ZP_03608347.1| hypothetical protein METSMIALI_01476 [Methanobrevibacter smithii
DSM 2375]
gi|166218770|sp|A5UKT8.1|RADB_METS3 RecName: Full=DNA repair and recombination protein RadB
gi|148551688|gb|ABQ86816.1| DNA repair protein, RadB [Methanobrevibacter smithii ATCC 35061]
gi|222435397|gb|EEE42562.1| DNA repair and recombination protein RadB [Methanobrevibacter
smithii DSM 2375]
Length = 234
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 19/182 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+PT G+D L GGV G VT++ GP G+GK+ L L++ A V+Y+D
Sbjct: 13 IPTN-SGIDNLLDGGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKK------VVYVD 65
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ- 202
E + R+ ++ FP+I ++ I+V +PTS E E+L+ I++ + +
Sbjct: 66 TEGGISINRIKQIAGEDFPKIVNN----------IIVFEPTSFLEQNENLKTIELWIRKH 115
Query: 203 -NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHD 261
+ V L V+DS AL + + L + ++ +A + +V+TNQ+ D
Sbjct: 116 HDDVDLCVLDSAVALYRVDDMKSSRLNKELGKQMGILAKIARNYDVAVVLTNQIYSSFDD 175
Query: 262 ES 263
++
Sbjct: 176 DN 177
>gi|409729967|ref|ZP_11271578.1| DNA repair and recombination protein RadA [Halococcus hamelinensis
100A6]
gi|448722272|ref|ZP_21704810.1| DNA repair and recombination protein RadA [Halococcus hamelinensis
100A6]
gi|445789983|gb|EMA40656.1| DNA repair and recombination protein RadA [Halococcus hamelinensis
100A6]
Length = 332
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 100/229 (43%), Gaps = 41/229 (17%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L ++ +D L GGV +TE+ G G GK+Q +LS
Sbjct: 55 FETGANVLERREQI----GKLSWQVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLS 110
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP+ YGGL+G I+ID E TF R+ +M PE +A M R + P
Sbjct: 111 VNVQLPSEYGGLEGSAIFIDSEDTFRPERIDQM-VRGLPE----DAIAGAMEAREIEGGP 165
Query: 184 TS---LSEFTES-LEKIKVSLLQNQ-----------------------VKLLVIDSMEAL 216
S + + +S L+KI V+ N V+L+ IDS+ A
Sbjct: 166 NSEEAMEQLVDSILDKIHVAKAFNSNHQILLAQKAQEIASEQEDTDWPVRLVCIDSLTAH 225
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSH 260
+ R A Q L+ H+ I + VVTNQV P S+
Sbjct: 226 FRAEYVGRGELAQRQQKLNKHLHDIDKVGNLYNAATVVTNQVSSNPDSY 274
>gi|288869574|ref|ZP_05975040.2| DNA repair and recombination protein RadB [Methanobrevibacter
smithii DSM 2374]
gi|288861581|gb|EFC93879.1| DNA repair and recombination protein RadB [Methanobrevibacter
smithii DSM 2374]
Length = 234
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 19/182 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+PT G+D L GGV G VT++ GP G+GK+ L L++ A V+Y+D
Sbjct: 13 IPTN-SGIDNLLDGGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKK------VVYVD 65
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ- 202
E + R+ ++ FP+I ++ I+V +PTS E E+L+ I++ + +
Sbjct: 66 TEGGISINRIKQIAGEDFPKIVNN----------IIVFEPTSFLEQNENLKTIELWIRKH 115
Query: 203 -NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHD 261
+ V L V+DS AL + + L + ++ +A + +V+TNQ+ D
Sbjct: 116 HDDVDLCVLDSAVALYRVDDMKSSRLNKELGKQMGILAKIARNYDVAVVLTNQIYSSFDD 175
Query: 262 ES 263
++
Sbjct: 176 DN 177
>gi|389851683|ref|YP_006353917.1| DNA repair and recombination protein RadB [Pyrococcus sp. ST04]
gi|388248989|gb|AFK21842.1| putative DNA repair and recombination protein RadB [Pyrococcus sp.
ST04]
Length = 226
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 27/179 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T +KGLD L GGV GV+ ++ GP TGKT F +++ LL +G V Y+D
Sbjct: 3 LTTGVKGLDRLLAGGVAKGVILQVYGPFATGKTTFAMQVGLLN---------EGKVAYVD 53
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E F+ R+ +M ++G+ Q + L+ +P L+E + + K+K +++
Sbjct: 54 TEGGFSPERLSQMA--------EARGIDPQRALEKFLIFEPMDLNEQRKIISKLK-TIIN 104
Query: 203 NQVKLLVIDSMEALVPGVHEQRAPGQH--PLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ L+V+DS+ A RA G+ ++ + ++ +A + ++V NQV S
Sbjct: 105 EKFSLVVVDSLTA------HYRAEGRDYGEIAKQLQVLQWIARKKNVAVIVVNQVYYDS 157
>gi|384487459|gb|EIE79639.1| DNA repair protein RAD51 [Rhizopus delemar RA 99-880]
Length = 344
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 128/296 (43%), Gaps = 34/296 (11%)
Query: 47 SEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTE 106
++V + VS +V F TA+ + +R E + ++ T K LD L GG+ G +TE
Sbjct: 74 TKVDKIIKEVSLLVNTGFTTAMEIQTRR--NEMI--YITTGSKELDKILGGGIETGSITE 129
Query: 107 LVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFH 166
L G TGK+Q C L++ L GG +G +YID E TF R++ + A+ F
Sbjct: 130 LFGEFRTGKSQLCHTLAVSCQLSMENGGAEGKCLYIDTEGTFRPSRILSI-ATRF----- 183
Query: 167 SKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA 225
G+ E+ I + + L + + + + LL++DS+ AL R
Sbjct: 184 --GLDTEICLNNIAYARAYNADHQAALLFQASSMMAETRFSLLIVDSVIALYRTDFAGRG 241
Query: 226 P---GQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR 282
Q L + + +A+ + IV+TNQ+ + D + ++ +K
Sbjct: 242 ELSLRQMHLGKFLRSLQRIADEFGVAIVITNQM-LSTVDGTNIFTADPKK---------- 290
Query: 283 YYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
G AHA T RL L G+ R V SP+ P +F+I GIS
Sbjct: 291 ------PTGGNIMAHACTTRLYLRKGRGESRICKVYDSPSLPETEATFSILEEGIS 340
>gi|162457755|ref|NP_001104918.1| DNA repair protein RAD51 homolog A [Zea mays]
gi|55976364|sp|Q67EU8.2|R51A1_MAIZE RecName: Full=DNA repair protein RAD51 homolog A; AltName:
Full=Rad51-like protein A; Short=RAD51A; AltName:
Full=ZmRAD51a
gi|4886752|gb|AAD32029.1|AF079428_1 RAD51 homolog RAD51A [Zea mays]
Length = 340
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 130/317 (41%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++ + S+IV F +A L QR + T + LD L
Sbjct: 60 DLLQIKGISEAKADKIIEAASKIVPLGFTSASQLHAQRLEIIQV----TTGSRELDKILE 115
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G +GKTQ C + LP GG +G +YID E TF +R++++
Sbjct: 116 GGIETGSITEIYGEFRSGKTQLCHTPCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 175
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L+V
Sbjct: 176 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MIETRFALMV 221
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H + SL EF + +V+TNQV Q D S +
Sbjct: 222 VDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADEFG-VAVVITNQVVAQV-DGSAM 279
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPP 324
+ + G AHA T RL L G +R V SP
Sbjct: 280 FA----------------GPQFKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAE 323
Query: 325 LAFSFTINPSGISLLTD 341
F + GI+ + D
Sbjct: 324 AEARFQLASEGIADVKD 340
>gi|170068519|ref|XP_001868898.1| RAD51C protein [Culex quinquefasciatus]
gi|167864512|gb|EDS27895.1| RAD51C protein [Culex quinquefasciatus]
Length = 275
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 123/274 (44%), Gaps = 48/274 (17%)
Query: 86 TRLKGLDAALCG-GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144
T K LD A+ GV G++TE GP G+GKTQ CL+L + A LP GGL G +Y+D
Sbjct: 21 TFCKDLDHAIGHPGVSVGLITEFCGPPGSGKTQMCLQLCVNANLPKELGGLGGKSLYLDT 80
Query: 145 ESTFTSRRMIEMGA-----------SSFPEIFH--SKGMAQEMAGRILVLQPTSLSEFTE 191
F+ R+ E+ +S P++ SK A+ + +L ++ +
Sbjct: 81 NFGFSPDRLREIATACVQHCQRIVRTSRPQLAEVTSKFTAESVMESVLYNHVHVCNDLNK 140
Query: 192 SLEKIKVSL-LQNQVKLLVIDSMEALVPGVHE---QRAPGQHPLSWHISLITSLAEFSRI 247
S++ ++ L L +++L+VIDS L+ E +R H + ++ + LA+ +
Sbjct: 141 SIDTLERLLKLGEKIRLVVIDSYSFLIRCNIENTLERIRIDHTV---LNRLQILAQQFKF 197
Query: 248 PIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL 305
IV+TN V + D S + P LG H + R+VL
Sbjct: 198 AIVLTNDVTTKLNGTDPSTIAP----------------------ALGDSHGHRINQRIVL 235
Query: 306 ---EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
++ G +VEK P +A F I+ +G+
Sbjct: 236 GQTGSEPGMFVASVEKGFHRPRMAVKFQISSAGV 269
>gi|448475881|ref|ZP_21603236.1| DNA repair and recombination protein RadA [Halorubrum aidingense
JCM 13560]
gi|445816099|gb|EMA66008.1| DNA repair and recombination protein RadA [Halorubrum aidingense
JCM 13560]
Length = 343
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 114/279 (40%), Gaps = 59/279 (21%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L ++ +D L GG+ +TE+ G G+GK+Q +++
Sbjct: 66 FETGATVLERREEI----GKLSWQIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LPA +GGLDGG I++D E TF R+ +M EI +A EM R + P
Sbjct: 122 VNVQLPAEHGGLDGGCIFVDSEDTFRPERIDDMVRGLDDEI-----LADEMERREIEGTP 176
Query: 184 TSLSEFTE----SLEKIKVSLLQNQ-----------------------VKLLVIDSMEAL 216
+ E L++I V+ N ++++ +DS+ A
Sbjct: 177 NNEEAMEELVGAFLDQIHVAKAFNSNHQILLAEKAKELAGEHEEGEWPIRIVCVDSLTAH 236
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R A Q L+ H+ + + + I+VTNQV
Sbjct: 237 FRAEYVGRGELADRQQKLNKHLHDLMRIGDLFNTAILVTNQV--------------ASNP 282
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQR 312
D D T+ A+ G HA T R+ L G +
Sbjct: 283 DSYFGDPTQ------AIGGNILGHASTFRMYLRKSKGDK 315
>gi|8439892|gb|AAF75078.1|AC007583_14 Contains similarity to DNA repair protein RAD51 homolog 4 (TRAD)
from Homo sapiens gi|6174940 [Arabidopsis thaliana]
Length = 285
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 20/201 (9%)
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
C P L L+E +H L T K D+ L GG G +TELVGP+ +GKTQFC+
Sbjct: 47 CRPLVNGLKLLEDLHRNKHT---LSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQFCM 103
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+ + A H G V+Y+D ++F++RR+ + SS + Q++ RIL
Sbjct: 104 QAAASVA-ENHL----GRVLYLDTGNSFSARRIAQFICSSSDAT-----LGQKVMSRILC 153
Query: 181 LQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALV-PGVHEQRAPGQHPLSW 233
+ ++L+ ++++L +++++LLV+DS+ +L+ P + + G+ +
Sbjct: 154 HTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITPILGGSGSQGRALMVA 213
Query: 234 HISLITSLAEFSRIPIVVTNQ 254
L+ LA I I+VTN
Sbjct: 214 IGYLLKKLAHEHSIAILVTNH 234
>gi|396462208|ref|XP_003835715.1| similar to DNA repair protein RAD51 homolog 1 [Leptosphaeria
maculans JN3]
gi|312212267|emb|CBX92350.1| similar to DNA repair protein RAD51 homolog 1 [Leptosphaeria
maculans JN3]
Length = 348
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 126/290 (43%), Gaps = 34/290 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + +R +E + + T K LD L GG+ G +TE+ G
Sbjct: 73 LAEASKLVPMGFTTATEMHSRR--SELI--SITTGSKQLDTLLAGGIETGSITEIFGEFR 128
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R + + A+ F G++
Sbjct: 129 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRCLAV-ANRF-------GLSG 180
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQ 228
+E+ + + + E L + + + + LL++DS +L R + Q
Sbjct: 181 EEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLLIVDSATSLYRTDFAGRGELSSRQ 240
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHI 287
L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 241 THLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK--------------- 285
Query: 288 VAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AHA T RL L G+ R + SP P F IN GI
Sbjct: 286 -PIGGNIIAHASTTRLSLRKGRGETRVCKIYDSPCLPESDCLFAINEDGI 334
>gi|301766940|ref|XP_002918902.1| PREDICTED: DNA repair protein XRCC3-like [Ailuropoda melanoleuca]
Length = 349
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 32 SLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGL 91
SL+ L++ LL S+VR + TAL L +Q+ L L
Sbjct: 40 SLSSLDVQHLLRTASSQVRGSSVF----------TALHLYQQKQRFPAQHQRLSLGCPVL 89
Query: 92 DAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSR 151
D L GG+P +TEL G + TGKTQ L+L L P +GGL G +YI E F +
Sbjct: 90 DGLLRGGLPLDGLTELAGHSSTGKTQLALQLCLTVQFPRQHGGLGAGAVYICTEDVFPNL 149
Query: 152 RMIEMGASSFPEIFHSKGMAQEMAG----------RILVLQPTSLSEFTESL-EKIKVSL 200
R+ ++ I + + ++ G +I + + E + +K+ V L
Sbjct: 150 RLQQL-------IAQQRHLRTDVPGDVVDRIKFGNQIFIKHVADVDTLLECVSKKVPVLL 202
Query: 201 LQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITSLAEFS---RIPIVVTNQVR 256
+ +L+VIDS+ A P E P P + + +L +L S R P++ NQV
Sbjct: 203 SRGMARLVVIDSVAA--PFRCEFDGPAAIPRARRLQALGAALRRLSGSFRSPVLCINQVT 260
Query: 257 PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ----- 311
+ ++ D + + + LG W++ + +RL++ + +
Sbjct: 261 EAAEEQ-----------DAAPGPQGLWDKRVSPALGMTWSNQLLMRLMVSRRRAEEAVLT 309
Query: 312 ------RFMNVEKSPTSPPLAFSFTINPSGI 336
R + V +P P + S+TI+ G+
Sbjct: 310 PPGHPTRTLEVVFAPHLPRSSCSYTIHAEGV 340
>gi|189237371|ref|XP_971150.2| PREDICTED: similar to GA17378-PA [Tribolium castaneum]
Length = 272
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T +DA GG+ ++E+VG AG GKTQ CL+LSL+A LP GGL V+Y+
Sbjct: 36 RISTGCSAIDAITRGGIAVNRISEIVGYAGVGKTQLCLQLSLMAQLPISLGGLGKSVVYL 95
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK--IKVSL 200
E F +R+ ++ A ++ +H G+ E I + + + + L K+ L
Sbjct: 96 CTEDAFPIKRLKDL-AITYSLKYHDLGINFE--DNIFIEHLADVEQLKKCLSNSLTKLLL 152
Query: 201 LQNQVKLLVIDSMEALVPG--VHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--R 256
++N V L+VIDS+ + + ++L+ LA+ +V NQV
Sbjct: 153 VKN-VGLVVIDSIAGIFRSETLDVNYKNRNQDFILIVTLLNKLAKKYGFAVVCVNQVTDN 211
Query: 257 PQSH-DESCL---------YPFQVQKMDRILKDRTRYYSHIVA 289
P ++ E CL Y F + +R + + R + + A
Sbjct: 212 PTTNVTEPCLGLAWSNCLTYRFNI---NRFVNTKVREFEVVFA 251
>gi|270008164|gb|EFA04612.1| spindle B [Tribolium castaneum]
Length = 274
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T +DA GG+ ++E+VG AG GKTQ CL+LSL+A LP GGL V+Y+
Sbjct: 38 RISTGCSAIDAITRGGIAVNRISEIVGYAGVGKTQLCLQLSLMAQLPISLGGLGKSVVYL 97
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK--IKVSL 200
E F +R+ ++ A ++ +H G+ E I + + + + L K+ L
Sbjct: 98 CTEDAFPIKRLKDL-AITYSLKYHDLGINFE--DNIFIEHLADVEQLKKCLSNSLTKLLL 154
Query: 201 LQNQVKLLVIDSMEALVPG--VHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--R 256
++N V L+VIDS+ + + ++L+ LA+ +V NQV
Sbjct: 155 VKN-VGLVVIDSIAGIFRSETLDVNYKNRNQDFILIVTLLNKLAKKYGFAVVCVNQVTDN 213
Query: 257 PQSH-DESCL---------YPFQVQKMDRILKDRTRYYSHIVA 289
P ++ E CL Y F + +R + + R + + A
Sbjct: 214 PTTNVTEPCLGLAWSNCLTYRFNI---NRFVNTKVREFEVVFA 253
>gi|393216597|gb|EJD02087.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 527
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 148/327 (45%), Gaps = 39/327 (11%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGH-LPTRLKGLDAAL 95
E+ K L LSE ++ + E VC +++ + R E +G T LD +
Sbjct: 40 EIAKRLRTSLSEAQAII----ENVCKEVASSVDI---RNLLEEVGDDKFTTGDAVLDRVI 92
Query: 96 CGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIE 155
GG+ G+V ELVG + +GKTQ L+LSLL L GGL G Y+ + ++R+ +
Sbjct: 93 GGGIRTGMVWELVGESASGKTQLALQLSLLVQLRPALGGLSGSACYLTTHAKLPTKRLNQ 152
Query: 156 M---GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDS 212
+ P + + A I L T + F ++++ + V+L+VIDS
Sbjct: 153 LILNHPLLSPSLCSLSDIHTVSAPTIEFLLHTLRNTFPALQDELRKDAKRKPVRLIVIDS 212
Query: 213 MEALVPGVHE-------QRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+ L + +R+ + LS +++ ++A I VV N+V +D
Sbjct: 213 ISTLFNTPEKSSSVTLFERSKALYELS---NVMHTIAARDNIAFVVVNEVTDVFNDYYPA 269
Query: 266 YPFQVQKMDRILKDRTRYYS--HIV-------AVLGFHWAHAVTIRLVLEAKSGQRFMNV 316
K D I +D+ ++++ H + A LG WA+ V R++L + +++++
Sbjct: 270 AQDDASKGDIIYRDQAKWFNSAHFIPRESTKEARLGLVWANQVNARIMLTRTNRRKYLD- 328
Query: 317 EKSPTSP-PLAFSFTIN--PSGISLLT 340
P PLA +N P+ +SL+T
Sbjct: 329 -----DPLPLAKRQHLNGGPTSVSLMT 350
>gi|387593590|gb|EIJ88614.1| DNA repair protein RAD51 [Nematocida parisii ERTm3]
Length = 222
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 39/252 (15%)
Query: 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF 161
G+ L G TGKTQ C L++ LP GG +G +YID E+TF S R+IE+ A +
Sbjct: 2 GIYYRLFGEFRTGKTQLCHMLAVTCQLPTELGGCNGKAVYIDTEATFRSERLIEI-AKRY 60
Query: 162 ---PEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV- 217
P + S + V + ++ E +++ + + +L ++DS+ A
Sbjct: 61 QLDPNVVLSN---------VCVARAYNVDHQIELVKQAGSLMASGEYRLCIVDSIIAHYR 111
Query: 218 ---PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMD 274
G E A H L ++ + LA+ + IV+TNQV Q + ++ +K
Sbjct: 112 TDFSGRGELSARQMH-LGVYLRSLMQLADEYNVAIVITNQVVAQVDGAASMFGGDTKK-- 168
Query: 275 RILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINP 333
G AHA RL L G R V SP+ P +F I
Sbjct: 169 --------------PTGGHVLAHASATRLYLRKGRGDLRICKVYDSPSLPESEATFRIIK 214
Query: 334 SGISLLTDDGTE 345
GI+ DG E
Sbjct: 215 EGIT----DGEE 222
>gi|169623440|ref|XP_001805127.1| hypothetical protein SNOG_14961 [Phaeosphaeria nodorum SN15]
gi|160704983|gb|EAT77504.2| hypothetical protein SNOG_14961 [Phaeosphaeria nodorum SN15]
Length = 1641
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 129/297 (43%), Gaps = 48/297 (16%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + ++R +E + + T K LD L GG+ G +TE+ G
Sbjct: 83 LAEASKLVPMGFTTATEMHQRR--SELIS--ITTGSKQLDTLLAGGIETGSITEIFGEFR 138
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R + + A+ F G++
Sbjct: 139 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRCLAV-ANRF-------GLSG 190
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPL 231
+E+ + + + E L + + + + LL++DS +L + G+ L
Sbjct: 191 EEVLDNVAYARAYNSDHQLELLNQAAQMMTETRFSLLIVDSATSL----YRTDFAGRGEL 246
Query: 232 SWHISLITSLAEFSR----------IPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDR 280
S S T LA+F R I +V+TNQV Q S ++ +K
Sbjct: 247 S---SRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK-------- 295
Query: 281 TRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AHA T RL L G+ R + SP P F IN GI
Sbjct: 296 --------PIGGNIIAHASTTRLSLRKGRGETRVCKIYDSPCLPESDCLFAINEDGI 344
>gi|26451592|dbj|BAC42893.1| putative f4l23 RAD51Calpha DNA repair-recombination factor
[Arabidopsis thaliana]
Length = 342
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 120/268 (44%), Gaps = 35/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T LD L GG+ VTE+ G G GKTQ ++LS+ +P GGL G IYI
Sbjct: 83 RITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYI 142
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKG-MAQEMAGRILVLQPTSLSE---------FTES 192
D E +F R +++ + ++ G M + + ++P + E +TE
Sbjct: 143 DTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQ 202
Query: 193 L---EKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ ++ + +N+ VK++++DS+ ++ A LS LA+ +
Sbjct: 203 IALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLAQRTRVLSEMALKFMKLAKKFSLA 262
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + + S FQ + LG W+H+ T R++L
Sbjct: 263 VVLLNQVTTKFSEGS----FQ-----------------LALALGDSWSHSCTNRVILYWN 301
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R+ ++KSP+ P + S+T+ G+
Sbjct: 302 GDERYAYIDKSPSLPSASASYTVTSRGL 329
>gi|408405119|ref|YP_006863102.1| DNA repair and recombination protein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365715|gb|AFU59445.1| DNA repair and recombination protein [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 276
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 113/285 (39%), Gaps = 42/285 (14%)
Query: 59 IVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF 118
++ F TA L +R + T K D L GG+ VTE+ G GTGKTQ
Sbjct: 22 VIDKSFVTATSLYSRRR------DRISTGSKSFDDLLGGGLETKAVTEVYGEFGTGKTQL 75
Query: 119 CLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI 178
C L ++ GGLD +YID E+TF R++ I ++G +
Sbjct: 76 CHTLCVMVQQSRLAGGLDAKALYIDTENTFRPERIV--------SIAEARGFDPRKSLEN 127
Query: 179 LVLQPTSLSEFTE-SLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWH 234
+++ S E +E+ + N ++L+V+DS A RA Q L+
Sbjct: 128 VIVAKAYNSAHQELIIEEAGAVIEDNSIRLIVVDSAVAHYRAEFLGRATLSERQQRLNKF 187
Query: 235 ISLITSLAEFSRIPIVVTNQVR--PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLG 292
+ ++ +AE + +V+TNQ++ P ++ + P G
Sbjct: 188 MHILVRIAETYEVAVVLTNQIQASPDAYFGDTVRP----------------------TGG 225
Query: 293 FHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
AH T R+ L+ R + SP FT+ GIS
Sbjct: 226 NVVAHTSTYRIHLKRSGKNRIARMVDSPYHAEREILFTLTDRGIS 270
>gi|345570489|gb|EGX53310.1| hypothetical protein AOL_s00006g176 [Arthrobotrys oligospora ATCC
24927]
Length = 406
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 130/308 (42%), Gaps = 35/308 (11%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
++ +L+ + + ++ +A +++V F TA + EQR+ + T K LD
Sbjct: 116 SKRQLLTIKGISEAKADKIIAEAAKLVPMGFTTATDIHEQRSKLISI----TTGSKQLDT 171
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID E TF R+
Sbjct: 172 LLAGGIETGSITEIFGEFRTGKSQLCHTLAVTCQLPLDMGGGEGKCLYIDTEGTFRPVRL 231
Query: 154 IEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDS 212
+ + G+ +E+ + + + + L + + + LL++DS
Sbjct: 232 L--------AVAQRYGLNGEEVLDNVAYARAYNSDHQLQLLNMAAQMMTETRFSLLIVDS 283
Query: 213 MEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQ 269
+L R + Q L+ + + LA+ I +V+TNQV Q D + P
Sbjct: 284 ATSLYRTDFSGRGDLSARQMHLARFMRQLQRLADEFGIAVVITNQVVAQV-DGAVFNPDP 342
Query: 270 VQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFS 328
+ + G AHA T RL L+ G+ R + SP P
Sbjct: 343 KK-----------------PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESECL 385
Query: 329 FTINPSGI 336
F IN GI
Sbjct: 386 FAINEDGI 393
>gi|452825486|gb|EME32482.1| DNA repair protein isoform 1 [Galdieria sulphuraria]
Length = 317
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 111/266 (41%), Gaps = 38/266 (14%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T LD L GG+ +TE+ G +GKTQ L + A LP G +G V YI
Sbjct: 73 HITTGSSALDELLGGGIETSSITEVFGEFRSGKTQLAHTLCVTAQLPKSVNGAEGRVAYI 132
Query: 143 DVESTFTSRRMIEMGASSF---PE-----IFHSKGMAQEMAGRILVLQPTSLSEFTESLE 194
D E+ F R++E+ A F PE I ++ E +IL + E L
Sbjct: 133 DTENCFRPERIVEI-AERFELDPEEVLDNILVARAYTSEHQRQILQI---------ELLV 182
Query: 195 KIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVV 251
I +++ LL++DS AL + R + Q L+ +S + L+E + + +
Sbjct: 183 HIAAKMVEETFGLLIVDSATALFRVDYSGRGELSERQQKLNRFMSQLLKLSEQFNLAVFI 242
Query: 252 TNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG- 310
TNQV + ++ +K V G AHA T R++L G
Sbjct: 243 TNQVMSTPDGSAGMFVVDPKK----------------PVGGHVIAHASTTRIMLRKGRGE 286
Query: 311 QRFMNVEKSPTSPPLAFSFTINPSGI 336
QR + SP +F ++ G+
Sbjct: 287 QRVAKIYDSPMLAENEATFEVSSGGV 312
>gi|121709155|ref|XP_001272325.1| meiotic recombination protein dmc1 [Aspergillus clavatus NRRL 1]
gi|119400474|gb|EAW10899.1| meiotic recombination protein dmc1 [Aspergillus clavatus NRRL 1]
Length = 337
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 138/340 (40%), Gaps = 42/340 (12%)
Query: 6 ISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP-- 63
I + K AN F +++ A T L++ +V++ +++ A+ C P
Sbjct: 27 IGAADITKLKANGFY--TVSSVHGATRKTLLKIKGFSEVKVEKIKEAIQK-----CLPAA 79
Query: 64 --FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLK 121
F TA+ L QR + T K D+ L GG ++E+ G GKTQ
Sbjct: 80 AGFITAMELSHQRKRVVKI----STGSKQFDSILGGGFQSMSISEVFGEFRCGKTQLSHT 135
Query: 122 LSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL 181
+S++A LP GG DG V YID E TF R+ ++ A F S AQE L
Sbjct: 136 MSVVAQLPKEMGGADGKVAYIDTEGTFRPERIAQI-AERFGVDSDS---AQENIAYARAL 191
Query: 182 QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLI 238
E +L + + +LL+IDS+ + R A Q L+ + +
Sbjct: 192 NSEHQLELLNTLSR---EFAGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKL 248
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
+AE I +++TNQV+ + +K V G AHA
Sbjct: 249 AHMAEEFNICVLMTNQVQSDPGASALFAGADGRK----------------PVGGHVLAHA 292
Query: 299 VTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
T R++L G +R ++ SP P ++ I GI+
Sbjct: 293 STTRVLLRKGRGEERVAKIQDSPDCPEREATYVITNGGIN 332
>gi|307191609|gb|EFN75106.1| DNA-repair protein XRCC3 [Harpegnathos saltator]
Length = 244
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 110/259 (42%), Gaps = 29/259 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T LD L G+ +T+ G AGTGKTQ L+L L LP GGL G IYI
Sbjct: 11 LTTGCSKLDTILKDGISCRGITQFYGAAGTGKTQLALQLCLTVQLPTTAGGLQAGAIYIC 70
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E+ F S+R+ ++ +S HS + G ++ + S + E KV L N
Sbjct: 71 TEALFPSKRLQQLIENSEIAKIHS------VNGDVIFVDHASTMDELEYCLHHKVPALMN 124
Query: 204 --QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISL-ITSLAEFSRIPIVVTNQVRPQSH 260
++ LL+IDS+ A V + P + I + L + + ++ NQV
Sbjct: 125 AHKIGLLIIDSIAAPYR-VEDWEDPSRGKSLRKIGRQLHELCKNGDLCVICINQVSAIID 183
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSP 320
+ I+ D + LG W+ +T + K+ R+ + +
Sbjct: 184 NN-------------IISDNEQ------PALGLTWSSMITSSIHFYRKASVRYACIMLAS 224
Query: 321 TSPPLAFSFTINPSGISLL 339
P + F+F +N SG+ ++
Sbjct: 225 HLPRITFNFEVNRSGVRVI 243
>gi|154305506|ref|XP_001553155.1| hypothetical protein BC1G_08522 [Botryotinia fuckeliana B05.10]
Length = 357
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 117/273 (42%), Gaps = 38/273 (13%)
Query: 76 ATEHLGGH-------LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
A EH GH + T K LDA L GG ++E+ G GKTQ L+++A L
Sbjct: 107 AAEH--GHFRKKCIRISTGSKQLDACLNGGFQTMSISEVYGEFRCGKTQLAHTLAVIAQL 164
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSE 188
P GG +G V YID E TF R+ E+ A F G+ + A +V +E
Sbjct: 165 PKEMGGAEGKVAYIDTEGTFRPERISEI-AERF-------GVDPDQALENIVYARAHNTE 216
Query: 189 FTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFS 245
E LE + + ++ +LL+IDS+ AL R + Q L+ + T +AE
Sbjct: 217 -QELLEGLAQNFATDEYRLLIIDSIMALYRSDFIGRGELSERQGALNAFLRKATQMAEEF 275
Query: 246 RIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL 305
+ + +TNQV S L+ R HI+ AHA T R++L
Sbjct: 276 NLVVFMTNQVMSDP-GASALFAG--------ADGRKPAGGHIL-------AHASTTRVLL 319
Query: 306 EAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
G +R V SP P ++ I GI+
Sbjct: 320 RKGRGEERVAKVVDSPDCPEREATYIITTGGIN 352
>gi|169781702|ref|XP_001825314.1| DNA repair protein rhp51 [Aspergillus oryzae RIB40]
gi|238498508|ref|XP_002380489.1| DNA repair protein RAD51, putative [Aspergillus flavus NRRL3357]
gi|83774056|dbj|BAE64181.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220693763|gb|EED50108.1| DNA repair protein RAD51, putative [Aspergillus flavus NRRL3357]
gi|391865352|gb|EIT74636.1| DNA repair protein RAD51/RHP55 [Aspergillus oryzae 3.042]
Length = 348
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 109/260 (41%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 103 ITTGSKQLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 162
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 163 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 214
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LLV+DS AL R + Q L+ + + LA+ I +V+TNQV Q
Sbjct: 215 TRFSLLVVDSATALYRTDFNGRGELSTRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQV 274
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 275 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRVCKIY 318
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 319 DSPCLPESDCLFAINEDGIG 338
>gi|351714713|gb|EHB17632.1| DNA repair protein RAD51-like protein 2 [Heterocephalus glaber]
Length = 206
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 122 LSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL 181
+S+LA LP + GGL+G V+YID ES F++ R+IE+ S FP F+ K + ++ V
Sbjct: 2 MSVLATLPTNMGGLEGAVVYIDTESAFSAERLIEIAESRFPRYFNIKEKLLLTSTKVHVF 61
Query: 182 QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHIS 236
+ + E + +E ++ ++ +VK+++IDS+ ++V + + G L+ S
Sbjct: 62 RELTCEEVLQRIESLEEEIISKKVKVVIIDSIASVVRKEFDTQLQGNMRERNKFLAKGAS 121
Query: 237 LITSLAEFSRIP 248
L+ LAE IP
Sbjct: 122 LLKYLAEEFSIP 133
>gi|281354182|gb|EFB29766.1| hypothetical protein PANDA_007427 [Ailuropoda melanoleuca]
Length = 331
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 32 SLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGL 91
SL+ L++ LL S+VR + TAL L +Q+ L L
Sbjct: 22 SLSSLDVQHLLRTASSQVRGSSVF----------TALHLYQQKQRFPAQHQRLSLGCPVL 71
Query: 92 DAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSR 151
D L GG+P +TEL G + TGKTQ L+L L P +GGL G +YI E F +
Sbjct: 72 DGLLRGGLPLDGLTELAGHSSTGKTQLALQLCLTVQFPRQHGGLGAGAVYICTEDVFPNL 131
Query: 152 RMIEMGASSFPEIFHSKGMAQEMAG----------RILVLQPTSLSEFTESL-EKIKVSL 200
R+ ++ I + + ++ G +I + + E + +K+ V L
Sbjct: 132 RLQQL-------IAQQRHLRTDVPGDVVDRIKFGNQIFIKHVADVDTLLECVSKKVPVLL 184
Query: 201 LQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITSLAEFS---RIPIVVTNQVR 256
+ +L+VIDS+ A P E P P + + +L +L S R P++ NQV
Sbjct: 185 SRGMARLVVIDSVAA--PFRCEFDGPAAIPRARRLQALGAALRRLSGSFRSPVLCINQVT 242
Query: 257 PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ----- 311
+ ++ D + + + LG W++ + +RL++ + +
Sbjct: 243 EAAEEQ-----------DAAPGPQGLWDKRVSPALGMTWSNQLLMRLMVSRRRAEEAVLT 291
Query: 312 ------RFMNVEKSPTSPPLAFSFTINPSGI 336
R + V +P P + S+TI+ G+
Sbjct: 292 PPGHPTRTLEVVFAPHLPRSSCSYTIHAEGV 322
>gi|7328532|dbj|BAA92869.1| Pprad51 [Penicillium paxilli]
Length = 347
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 110/259 (42%), Gaps = 28/259 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 103 ITTGSKRLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 162
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + A F + +E+ + + + + L + + +
Sbjct: 163 TEGTFRPVRLLAV-AQRFGLV------GEEVLDNVAYARAYNSDHQLQLLNQASQMMCET 215
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-S 259
+ LL++DS AL R + Q L+ + + LA+ + +V+TNQV Q
Sbjct: 216 RFSLLIVDSATALYRTDFNGRGELSSRQTHLAKFLRTLQRLADEFGVAVVITNQVVAQVD 275
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 276 GGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRVCKIYD 319
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 320 SPCLPESDCLFAINEDGIG 338
>gi|344210477|ref|YP_004794797.1| DNA repair and recombination protein RadA [Haloarcula hispanica
ATCC 33960]
gi|343781832|gb|AEM55809.1| DNA repair and recombination protein RadA [Haloarcula hispanica
ATCC 33960]
Length = 349
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 100/232 (43%), Gaps = 54/232 (23%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L + +D L GGV +TE+ G G GK+Q +LS
Sbjct: 67 FETGSTVLERREQI----GKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLS 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL-- 181
+ LPA +GGL+G I++D E TF R+ +M KG+A E+ +VL
Sbjct: 123 VNVQLPAEHGGLEGSAIFVDSEDTFRPERIEQM----------VKGLADEVLADTMVLHG 172
Query: 182 --------QPTS---LSEFTES-LEKIKVSLLQNQ-----------------------VK 206
PT L + S LEKI V+ N V+
Sbjct: 173 IVEEGDDADPTDEDLLDDLVASVLEKIHVAKAFNSNHQILLAEKAQEIASESQDEEFPVR 232
Query: 207 LLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
LL +DS+ A + R A Q L+ H+ + + + + +VVTNQV
Sbjct: 233 LLAVDSLTAHFRAEYVGRGELADRQQKLNKHLHDLMRVGDLNNTAVVVTNQV 284
>gi|334184917|ref|NP_001189749.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana]
gi|330255440|gb|AEC10534.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana]
Length = 387
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 116/268 (43%), Gaps = 35/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T LD L GG+ VTE+ G G GKTQ ++LS+ +P GGL G IYI
Sbjct: 128 RITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYI 187
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKG-MAQEMAGRILVLQPTSLSE---------FTES 192
D E +F R +++ + ++ G M + + ++P + E +TE
Sbjct: 188 DTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQ 247
Query: 193 LEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ + K VK++++DS+ ++ A LS LA+ +
Sbjct: 248 IALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLAQRTRVLSEMALKFMKLAKKFSLA 307
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + + S FQ + LG W+H+ T R++L
Sbjct: 308 VVLLNQVTTKFSEGS----FQ-----------------LALALGDSWSHSCTNRVILYWN 346
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R+ ++KSP+ P + S+T+ G+
Sbjct: 347 GDERYAYIDKSPSLPSASASYTVTSRGL 374
>gi|71028444|ref|XP_763865.1| DNA repair protein Rad51 [Theileria parva strain Muguga]
gi|68350819|gb|EAN31582.1| DNA repair protein rad51, putative [Theileria parva]
Length = 343
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 109/256 (42%), Gaps = 30/256 (11%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGV G +TE++G TGK+Q C L++ LP G +G +++D E TF
Sbjct: 112 LDKLLQGGVETGSITEIIGEFKTGKSQLCHTLAVTCQLPVEQSGGEGKCLWVDSEGTFRP 171
Query: 151 RRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
R++ + A F G++ + + + + E L + + Q + LL+
Sbjct: 172 ERIVSI-AKRF-------GLSPSDCLDNVAYARAYNTDHQLELLVEASAMMAQTRFALLI 223
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS +L + R A Q L + + +A+ + +V+TNQV
Sbjct: 224 VDSATSLYRSDYSGRGELASRQMHLCKFLRALQRIADTFGVAVVITNQV----------- 272
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
V K+D + T + + + V G AHA RL L G+ R + SP P
Sbjct: 273 ---VAKVDAM---STFFGNDKLPVGGHIIAHASQTRLFLRQSKGESRICKIYDSPVLPEG 326
Query: 326 AFSFTINPSGISLLTD 341
F I GI+ D
Sbjct: 327 EAVFAITDGGINDYHD 342
>gi|18406752|ref|NP_566040.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana]
gi|55583940|sp|Q8GXF0.2|RA51C_ARATH RecName: Full=DNA repair protein RAD51 homolog 3; AltName: Full=DNA
repair-recombination protein RAD51C; Short=AtRAD51C
gi|11064475|emb|CAC14294.1| Rad51C protein [Arabidopsis thaliana]
gi|15425731|dbj|BAB64343.1| AtRAD51Calpha [Arabidopsis thaliana]
gi|20196911|gb|AAB82635.2| putative RAD51C-like DNA repair protein [Arabidopsis thaliana]
gi|330255439|gb|AEC10533.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana]
Length = 363
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 116/268 (43%), Gaps = 35/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T LD L GG+ VTE+ G G GKTQ ++LS+ +P GGL G IYI
Sbjct: 104 RITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYI 163
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKG-MAQEMAGRILVLQPTSLSE---------FTES 192
D E +F R +++ + ++ G M + + ++P + E +TE
Sbjct: 164 DTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQ 223
Query: 193 LEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ + K VK++++DS+ ++ A LS LA+ +
Sbjct: 224 IALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLAQRTRVLSEMALKFMKLAKKFSLA 283
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + + S FQ + LG W+H+ T R++L
Sbjct: 284 VVLLNQVTTKFSEGS----FQ-----------------LALALGDSWSHSCTNRVILYWN 322
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R+ ++KSP+ P + S+T+ G+
Sbjct: 323 GDERYAYIDKSPSLPSASASYTVTSRGL 350
>gi|406862778|gb|EKD15827.1| DNA repair protein rhp51 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 350
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 127/291 (43%), Gaps = 36/291 (12%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
L S++V F TA + ++R +E + + T K LD L GG+ G VTE+ G
Sbjct: 78 LTEASKLVPMGFTTATEMHQRR--SELI--SITTGSKQLDTLLAGGIETGSVTEIFGEFR 133
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + + G++
Sbjct: 134 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLL--------AVANRYGLSG 185
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP----GVHEQRAPG 227
+E+ + + + + L + + + + LL++DS +L G E +
Sbjct: 186 EEVLDNVAYARAYNSDHQLQLLNQASAMMCETRFSLLIVDSATSLYRTDFVGRGELSSRQ 245
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSH 286
H L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 246 TH-LAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK-------------- 290
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AHA T RL L+ G+ R + SP P F IN GI
Sbjct: 291 --PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEDGI 339
>gi|119719653|ref|YP_920148.1| Rad51-like [Thermofilum pendens Hrk 5]
gi|119524773|gb|ABL78145.1| Rad51-like protein [Thermofilum pendens Hrk 5]
Length = 250
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T ++ LD L GG+ G +TE +G G GKTQ C +LS++ LP GGL+ +Y+
Sbjct: 29 RISTGVRSLDDLLEGGIEVGSITEFIGEFGAGKTQICHQLSVMVQLPKDKGGLNARALYV 88
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLL 201
D E TF R++ +I ++G+ E I+ + SL E L K ++
Sbjct: 89 DTEGTFRPERIV--------QIARARGLDPEKTLENIIYARAYSLGGLEELLSKALAEVV 140
Query: 202 QNQVKLLVIDSMEALV 217
+ V L+V+D LV
Sbjct: 141 KGDVGLVVLDEATRLV 156
>gi|238498922|ref|XP_002380696.1| meiotic recombination protein (Dmc1), putative [Aspergillus flavus
NRRL3357]
gi|220693970|gb|EED50315.1| meiotic recombination protein (Dmc1), putative [Aspergillus flavus
NRRL3357]
gi|391868075|gb|EIT77298.1| meiotic recombination protein [Aspergillus oryzae 3.042]
Length = 318
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 131/322 (40%), Gaps = 40/322 (12%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEH 79
+ + A T L++ +V++ +++ A+ C P F TA+ L QR
Sbjct: 24 VASVHGATRKTLLKIRGFSEVKVEKIKDAINK-----CLPSASGFITAMELSHQRKRVVR 78
Query: 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGV 139
+ T K DA L GG ++E+ G GKTQ +S++A LP GG DG V
Sbjct: 79 I----STGSKQFDAILGGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKEMGGADGKV 134
Query: 140 IYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVS 199
YID E TF R+ ++ A F S A+E L E +L K
Sbjct: 135 AYIDTEGTFRPERIAQI-AERFGVDADS---ARENIAYARALNSEHQLELLNTLSK---E 187
Query: 200 LLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256
+ +LL+IDS+ + R A Q L+ + + +AE + +++TNQV+
Sbjct: 188 FTGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCVLMTNQVQ 247
Query: 257 PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMN 315
+ +K V G AHA T R++L G +R
Sbjct: 248 SDPGASALFAGADGRK----------------PVGGHVLAHASTTRVLLRKGRGDERVAK 291
Query: 316 VEKSPTSPPLAFSFTINPSGIS 337
++ SP P ++ I GI+
Sbjct: 292 IQDSPDCPEQEATYVITNGGIN 313
>gi|300176345|emb|CBK23656.2| unnamed protein product [Blastocystis hominis]
Length = 316
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 34/188 (18%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T K LD L GG+ G +TEL G TGKTQ C L ++ LP GG +G +YI
Sbjct: 79 HISTGCKELDRILGGGMETGSITELYGEFRTGKTQMCHTLCVICQLPISQGGGEGKALYI 138
Query: 143 DVESTFTSRRMIEMGAS------------SFPEIFHSKGMAQEMAGRILVLQPTSLSEFT 190
D E+TF R+I++ ++ ++S+ Q L++Q +L
Sbjct: 139 DTENTFRPERLIQISKRFGLNPDDVLDNVTYARAYNSEHQQQ------LLIQAAAL---- 188
Query: 191 ESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRI 247
+ +++ L+++DS AL + R + Q L+ + + LA+ +
Sbjct: 189 ---------MAESRYALVIVDSATALFRTDYTGRGELSTRQQSLAQFLRGLQKLADEFGV 239
Query: 248 PIVVTNQV 255
+V+TNQV
Sbjct: 240 AVVITNQV 247
>gi|344240520|gb|EGV96623.1| Protein phosphatase 1E [Cricetulus griseus]
Length = 880
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 119/273 (43%), Gaps = 53/273 (19%)
Query: 21 ARNITTAKDALSLTELELMKLLDVELSEVRSALALVSE------------IVCPPFQTAL 68
A TA+D L + EL K + + E L +V V TAL
Sbjct: 20 AAGFQTAEDVLGVKPSELSKEVGISKEEALETLQIVRRESLTDKPRCAGASVAGKKYTAL 79
Query: 69 LLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++ +
Sbjct: 80 ELLEQ----EHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQI 135
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMG----------ASSFPEIFHSKGMAQEMAGRI 178
P +GG+ G ++ID E +F R++ + A + + H K + I
Sbjct: 136 PECFGGVAGEAVFIDTEGSFMVDRVVTLANACIQHLHLIAGTHKDEEHQKALEGFTLENI 195
Query: 179 LV-LQPTSLSEFTESLEKIKV--SLLQN--QVKLLVIDSMEALVPGVHEQRAPGQHPLSW 233
L + ++TE L ++ + L N +V+L++ID + AL P +H L
Sbjct: 196 LSHIYYFRCHDYTELLAQVYLLPDFLSNHSKVQLVIIDGI-AL---------PFRHDLD- 244
Query: 234 HISLIT-----------SLAEFSRIPIVVTNQV 255
+SL T SLA R+ +++TNQ+
Sbjct: 245 DLSLRTRLLNGLAQQMISLANNHRLAVILTNQM 277
>gi|19310403|gb|AAL84941.1| At2g45280/F4L23.21 [Arabidopsis thaliana]
Length = 363
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 116/268 (43%), Gaps = 35/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T LD L GG+ VTE+ G G GKTQ ++LS+ +P GGL G IYI
Sbjct: 104 RITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYI 163
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKG-MAQEMAGRILVLQPTSLSE---------FTES 192
D E +F R +++ + ++ G M + + ++P + E +TE
Sbjct: 164 DTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQ 223
Query: 193 LEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ + K VK++++DS+ ++ A LS LA+ +
Sbjct: 224 IALVSHLEKFISENKDVKVVIVDSITFHFRQDYDDLAQRTRVLSEMALKFMKLAKKFSLA 283
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + + S FQ + LG W+H+ T R++L
Sbjct: 284 VVLLNQVTTKFSEGS----FQ-----------------LALALGDSWSHSCTNRVILYWN 322
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R+ ++KSP+ P + S+T+ G+
Sbjct: 323 GDERYAYIDKSPSLPSASASYTVTSRGL 350
>gi|213405411|ref|XP_002173477.1| RecA family ATPase Dmc1 [Schizosaccharomyces japonicus yFS275]
gi|212001524|gb|EEB07184.1| RecA family ATPase Dmc1 [Schizosaccharomyces japonicus yFS275]
Length = 332
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 120/284 (42%), Gaps = 34/284 (11%)
Query: 60 VCPP-FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF 118
+CP F TA+ + + R + T K DA L GGV +TE+ G GKTQ
Sbjct: 74 LCPANFATAMEISQSRKRV----WSISTGSKAFDAMLGGGVQSMSITEVFGEFRCGKTQM 129
Query: 119 CLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI 178
L + A LP GG +G V +ID E TF R+ + E F A + I
Sbjct: 130 SHTLCVTAQLPREMGGAEGKVAFIDTEGTFRPDRI-----RAIAERFGVD--ADQAMENI 182
Query: 179 LVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQR---APGQHPLSWH 234
+V + + + + + K+ ++ + +LL++DS+ AL R + Q L+
Sbjct: 183 IVSRAYNSEQQMDYITKLATIFAEDGRYRLLIVDSIMALFRVDFSGRGELSERQQKLNIM 242
Query: 235 ISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
++ + ++E + + VTNQV+ D F DR H++
Sbjct: 243 LARLNHISEEFNVAVFVTNQVQA---DPGAALMFAS-------NDRKPVGGHVM------ 286
Query: 295 WAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
AHA R++L G +R + SP P S+ I GI+
Sbjct: 287 -AHASATRILLRKGRGEERVAKLNDSPDMPEAECSYVITSGGIA 329
>gi|195451479|ref|XP_002072940.1| GK13420 [Drosophila willistoni]
gi|194169025|gb|EDW83926.1| GK13420 [Drosophila willistoni]
Length = 355
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 129/308 (41%), Gaps = 31/308 (10%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T +L+ + + S+V ++ S++V F +A + R+ L T K LD
Sbjct: 69 TRKQLLNIKGLGESKVDYIMSEASKLVPMGFTSARTYHQMRSEVVML----TTGSKELDK 124
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GG+ G +TE+ G GKTQ C L++ LP G +G +YID E TF R+
Sbjct: 125 LLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQNGGEGKCLYIDTEGTFRPERL 184
Query: 154 IEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM 213
S+ + + K ++ + + + + T+ L + +++ +L++DS
Sbjct: 185 -----SAIAQRY--KMEEPDVLDNVAYARAYNSDQQTKLLHMAAGMMFESRYAILIVDSA 237
Query: 214 EALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQV 270
AL + R A Q+ L + ++ LA+ + +V+TNQV + ++
Sbjct: 238 MALYRSEYVGRGELAARQNHLGLFLRMLQRLADEFGVAVVITNQVTASVDGGAGMFVADA 297
Query: 271 QKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSF 329
+K + G AHA T RL L + K R + SP P F
Sbjct: 298 KK----------------PIGGHIMAHASTTRLYLRKGKGDSRICKIYDSPCLPESEAIF 341
Query: 330 TINPSGIS 337
I GI
Sbjct: 342 AILGDGIG 349
>gi|403224170|dbj|BAM42300.1| DNA repair protein Rad51 [Theileria orientalis strain Shintoku]
Length = 343
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 105/256 (41%), Gaps = 30/256 (11%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
D L GG+ G +TE++G TGK+Q C L++ LP G +G ++ID E TF
Sbjct: 112 FDTLLQGGIETGSITEVIGEFKTGKSQLCHTLAVTCQLPVEQSGGEGKCLWIDSEGTFRP 171
Query: 151 RRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
R++ + A F G++ + + + + E L + + Q + LL+
Sbjct: 172 ERIVSI-AKRF-------GLSPSDCLDNVAYARAYNTDHQLELLVEATAMMSQTRFALLI 223
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R A Q L + + +A+ + +V+TNQV + S +
Sbjct: 224 VDSATALYRSDYSGRGELASRQMHLCKFLRALQRIADTFGVAVVITNQVIAKVDAMSSFF 283
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
D+ HI+ AHA RL L G+ R V SP P
Sbjct: 284 G----------NDKLPVGGHII-------AHASQTRLFLRQSKGESRICKVYDSPVLPEG 326
Query: 326 AFSFTINPSGISLLTD 341
F I GIS D
Sbjct: 327 EAVFAITDGGISDYQD 342
>gi|209946394|gb|ACI97428.1| spindle B [Drosophila melanogaster]
Length = 404
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 90/215 (41%), Gaps = 29/215 (13%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKTQ L+LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
+IDS+ A+ ++ +H +L+ S A+ +V NQV
Sbjct: 211 IIDSVAAIFRLYNDYLERARHMRRLADALL-SYADKYNCAVVCVNQV------------- 256
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL 303
TR + LG WAH RL
Sbjct: 257 -----------ATRDGQDEIPCLGLQWAHLGRTRL 280
>gi|317155982|ref|XP_001825494.2| meiotic recombination protein DMC1 [Aspergillus oryzae RIB40]
Length = 337
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 131/322 (40%), Gaps = 40/322 (12%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEH 79
+ + A T L++ +V++ +++ A+ C P F TA+ L QR
Sbjct: 43 VASVHGATRKTLLKIRGFSEVKVEKIKDAINK-----CLPSASGFITAMELSHQRKRVVR 97
Query: 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGV 139
+ T K DA L GG ++E+ G GKTQ +S++A LP GG DG V
Sbjct: 98 I----STGSKQFDAILGGGFQSMSISEVFGEFRCGKTQLSHTMSVVAQLPKEMGGADGKV 153
Query: 140 IYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVS 199
YID E TF R+ ++ A F S A+E L E +L K
Sbjct: 154 AYIDTEGTFRPERIAQI-AERFGVDADS---ARENIAYARALNSEHQLELLNTLSK---E 206
Query: 200 LLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256
+ +LL+IDS+ + R A Q L+ + + +AE + +++TNQV+
Sbjct: 207 FTGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCVLMTNQVQ 266
Query: 257 PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMN 315
+ +K V G AHA T R++L G +R
Sbjct: 267 SDPGASALFAGADGRK----------------PVGGHVLAHASTTRVLLRKGRGDERVAK 310
Query: 316 VEKSPTSPPLAFSFTINPSGIS 337
++ SP P ++ I GI+
Sbjct: 311 IQDSPDCPEQEATYVITNGGIN 332
>gi|145323780|ref|NP_001077479.1| DNA repair protein RAD51-like 4 [Arabidopsis thaliana]
gi|332190053|gb|AEE28174.1| DNA repair protein RAD51-like 4 [Arabidopsis thaliana]
Length = 304
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 20/205 (9%)
Query: 58 EIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQ 117
E C P L L+E +H L T K D+ L GG G +TELVGP+ +GKTQ
Sbjct: 48 ERQCRPLVNGLKLLEDLHRNKHT---LSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQ 104
Query: 118 FCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177
FC++ + A H G V+Y+D ++F++RR+ + SS + Q++ R
Sbjct: 105 FCMQAAASVA-ENHL----GRVLYLDTGNSFSARRIAQFICSSSDAT-----LGQKVMSR 154
Query: 178 ILVLQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALV-PGVHEQRAPGQHP 230
IL + ++L+ ++++L +++++LLV+DS+ +L+ P + + G+
Sbjct: 155 ILCHTVYDIYTLFDTLQDLEITLRLQMNVNESRLRLLVVDSISSLITPILGGSGSQGRAL 214
Query: 231 LSWHISLITSLAEFSRIPIVVTNQV 255
+ L+ LA I I+VTN
Sbjct: 215 MVAIGYLLKKLAHEHSIAILVTNHT 239
>gi|363751170|ref|XP_003645802.1| hypothetical protein Ecym_3507 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889436|gb|AET38985.1| Hypothetical protein Ecym_3507 [Eremothecium cymbalariae
DBVPG#7215]
Length = 334
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 136/335 (40%), Gaps = 51/335 (15%)
Query: 21 ARNITTAKDALSLTELELMKLL---DVELSEVRSALALVSEIVCPPFQTALLLMEQRAAT 77
A I + LS T L+K+ +V++ +V+ A + ++ P T L + +R +
Sbjct: 37 ASGIFSVNTVLSTTRRNLLKIKGFSEVKVEKVKEAAGKIIQVGFIP-ATVQLDIRKRVFS 95
Query: 78 EHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDG 137
+ T K LD+ L GGV +TE+ G GKTQ L + A LP GG +G
Sbjct: 96 ------ISTGSKQLDSILGGGVMTMSITEVFGEFRCGKTQMSHTLCVTAQLPRELGGGEG 149
Query: 138 GVIYIDVESTFTSRRMIEMGAS-------SFPEIFHSKGMAQEMAGRILVLQPTSLSEFT 190
V YID E TF R+ ++ A + +++ + E
Sbjct: 150 KVAYIDTEGTFRPERIKQIAARYELDPDICLENVSYARALNSEHQ--------------M 195
Query: 191 ESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRI 247
E +E++ L + +LL++DS+ A + R Q L+ H+S + +AE +
Sbjct: 196 ELVEQLGQQLSSGEYRLLIVDSIMANFRVDYCGRGELNERQQRLNQHLSRLNRIAEDYNV 255
Query: 248 PIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA 307
+ +TNQV+ + +K V G AHA R++L
Sbjct: 256 AVFMTNQVQSDPGASALFASADGRK----------------PVGGHVLAHASATRILLRK 299
Query: 308 KSG-QRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
G +R ++ SP P + I GI+ D
Sbjct: 300 GRGEERVAKLQDSPDMPERECVYVIGEKGITDSDD 334
>gi|403376234|gb|EJY88098.1| Meiotic recombination protein DMC1, putative [Oxytricha trifallax]
Length = 286
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 131/310 (42%), Gaps = 38/310 (12%)
Query: 34 TELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDA 93
T+ +++ + + + S+I + + +++ME+R + + T D
Sbjct: 3 TKKDMLNIKGITDQKAEKIYEAASKIETMGYVSGMVIMEKRKKIKKISTGSAT----FDK 58
Query: 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153
L GGV +TE G TGKTQ L + A LP GG +G V+YID E+TF R+
Sbjct: 59 LLQGGVESQGITEAFGEFRTGKTQLAHTLCVTAQLPKSQGGGEGKVLYIDTENTFRPERI 118
Query: 154 IEMGASSF---PEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
++ A F P+ E+ I+V + ++ + + +++++Q LLVI
Sbjct: 119 KQI-ARRFELDPD---------EVLNNIMVGRSFTVDSLNTLIMQAGGAMIEDQFSLLVI 168
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
DS+ A + R + Q L +S I ++E + + ++NQV S Y
Sbjct: 169 DSIMAPFRVDYSGRGELSERQQVLGKVLSKIQKISEQFNVAVFLSNQVMADPG-ASMTYA 227
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLA 326
+K + G AHA T RL L G QR + SP+ P
Sbjct: 228 ADPKK----------------PIGGNILAHASTTRLYLRKGKGEQRVCKIFDSPSIPEGE 271
Query: 327 FSFTINPSGI 336
F I+ GI
Sbjct: 272 CIFQISEGGI 281
>gi|448663902|ref|ZP_21683888.1| DNA repair and recombination protein RadA [Haloarcula amylolytica
JCM 13557]
gi|445775218|gb|EMA26230.1| DNA repair and recombination protein RadA [Haloarcula amylolytica
JCM 13557]
Length = 349
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 100/232 (43%), Gaps = 54/232 (23%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L + +D L GGV +TE+ G G GK+Q +L+
Sbjct: 67 FETGSTVLERREQI----GKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLA 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL-- 181
+ LPA +GGL+G I++D E TF R+ +M KG+A E+ LVL
Sbjct: 123 VNVQLPAEHGGLEGSAIFVDSEDTFRPERIEQM----------VKGLADEVLADTLVLHG 172
Query: 182 --------QPTS---LSEFTES-LEKIKVSLLQNQ-----------------------VK 206
PT L + S LEKI V+ N V+
Sbjct: 173 IVEEEDDADPTDEDLLDDLVASVLEKIHVAKAFNSNHQILLAEKAQEIASESQDEEFPVR 232
Query: 207 LLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
LL +DS+ A + R A Q L+ H+ + + + + +VVTNQV
Sbjct: 233 LLAVDSLTAHFRAEYVGRGELADRQQKLNKHLHDLMRVGDLNNTAVVVTNQV 284
>gi|346465319|gb|AEO32504.1| hypothetical protein [Amblyomma maculatum]
Length = 296
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 17/234 (7%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+ + + ++ LA +++V F TA + ++R+ + T K LD L
Sbjct: 55 QLLAIKGISEAKADKLLAEAAKLVPLGFTTATEIHQKRSDIVQI----TTGSKELDKLLG 110
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP + G +G +YID E TF R++
Sbjct: 111 GGIETGSITEMFGEFRTGKTQLCHMLAVTCQLPIEHSGGEGKCLYIDTEGTFRPERLL-- 168
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ + + G Q++ + + + T+ L + + + + LL++DS AL
Sbjct: 169 ---AVADKYGLSG--QDVLDNVAYARAYNSDHQTQLLIQASAMMAETRYALLIVDSATAL 223
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ---SHDESC 264
+ R + Q L+ + ++ LA+ + +V+TNQV Q + D SC
Sbjct: 224 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAADVSC 277
>gi|156842362|ref|XP_001644549.1| hypothetical protein Kpol_1052p39 [Vanderwaltozyma polyspora DSM
70294]
gi|156115194|gb|EDO16691.1| hypothetical protein Kpol_1052p39 [Vanderwaltozyma polyspora DSM
70294]
Length = 334
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 136/331 (41%), Gaps = 51/331 (15%)
Query: 21 ARNITTAKDALSLTELELMK---LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAAT 77
A I T LS+T+ L K L D+++ +++ A + ++ P T L + QR +
Sbjct: 37 AGGIFTVNTVLSVTKRNLSKIKGLSDIKVEKIKEAAGKIIQVGFIP-ATIQLNIRQRVLS 95
Query: 78 EHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDG 137
L T K LD+ L GG+ +TE+ G GKTQ L + LP GG +G
Sbjct: 96 ------LSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMAHTLCVTTQLPREMGGGEG 149
Query: 138 GVIYIDVESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT 190
V YID E TF R+ ++ + + +++ + E
Sbjct: 150 KVAYIDTEGTFRPERIKQIAERYNLDPDACLENVSYARALNSEHQ--------------M 195
Query: 191 ESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRI 247
E +EK+ L + +L+V+DS+ A + R Q L+ H+ + +AE +
Sbjct: 196 ELVEKLGEDLSSGEYRLIVMDSIMANFRVDYCGRGELNERQQKLNQHLFKLNRVAEEFNV 255
Query: 248 PIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA 307
+ +TNQV+ + +K V G AHA R++L
Sbjct: 256 AVFMTNQVQSDPGASALFASADGRK----------------PVGGHVLAHASATRILLRK 299
Query: 308 KSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
G +R ++ SP P ++ I +GI+
Sbjct: 300 GRGDERVAKLQDSPDMPEKECTYIIGENGIT 330
>gi|320168182|gb|EFW45081.1| RAD51C protein [Capsaspora owczarzaki ATCC 30864]
Length = 423
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 124/287 (43%), Gaps = 39/287 (13%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGG-VPFGVVTELVGPAGTGKTQFCLKLSL 124
+A L++Q A+ G + T +DA L GG VP G +TE G G GKTQ +++++
Sbjct: 96 SAAALLQQEASR----GAIRTGSFDMDAMLGGGGVPVGKITEFCGAPGIGKTQLGIQIAV 151
Query: 125 LAALPAHYGGLDGGVIYIDVESTFTSRR---MIEMGASSFPEIFHSK-------GMAQEM 174
A +P GGL+G +YID E +F R + E G E+ S+ G+
Sbjct: 152 NAHMPRAIGGLEGEAVYIDTEGSFIIERSEDIAEGGVRFAAELVASQLPPQQAIGLGGMT 211
Query: 175 AGRILV-LQPTSLSEFTESLEKIKV--SLLQNQ--VKLLVIDSMEALVPGVHEQRAPGQH 229
A ++L + + ++ E L + + L V+++++DS+ + A
Sbjct: 212 AQQVLAGIHYFRVHDYIEQLALVNILPEFLAEHPAVRVIIVDSVAFHFRHHFDDMALRTR 271
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVA 289
L+ +A S + IV+ NQ+ + E R SH+V
Sbjct: 272 LLNGMAQSFLKMAIDSSVAIVLVNQMTTKMGSE-------------------RGQSHLVP 312
Query: 290 VLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
LG W HA T R+++ K G R + KS + ++ I G+
Sbjct: 313 ALGESWGHASTNRVIMFWKDGLRQATLYKSSSMQERTITYQITAEGV 359
>gi|351698981|gb|EHB01900.1| DNA repair protein RAD51-like protein 3 [Heterocephalus glaber]
Length = 304
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 78 TALDLLEQ----EHTQGFIVTFCSALDNILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 133
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159
+P +GG+ G ++ID E +F R++++ +
Sbjct: 134 VQIPECFGGVAGEAVFIDTEGSFMVERVVDLATA 167
>gi|154345283|ref|XP_001568583.1| RAD51/dmc1 protein [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134065920|emb|CAM43702.1| RAD51/dmc1 protein [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 359
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 130/308 (42%), Gaps = 38/308 (12%)
Query: 36 LELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAAL 95
+++ L D ++ ++ A VS++ F T + ++QR+ + T LD L
Sbjct: 80 IQIKGLSDAKVDKIIEAARRVSDV---GFITGSIYLQQRSTILRI----STGSTALDQLL 132
Query: 96 CGG-VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMI 154
GG + +TE G TGKTQ L + + LP GG +G V+Y+D E TF R+
Sbjct: 133 GGGGIESRSITEAFGEFRTGKTQIGHTLCVTSQLPLEMGGGNGKVVYVDTEGTFRPERI- 191
Query: 155 EMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM 213
E F G+ + ILV + + L + + ++Q LLV+DS+
Sbjct: 192 ----RPIAERF---GLDPNSVLDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLLVVDSI 244
Query: 214 EALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQV 270
AL R A Q L+ +S + +AE + + +TNQV S
Sbjct: 245 TALFRVDFSGRGELAERQQKLAKMLSQLMKIAEEFNVAVYITNQVVSDPGGASMF----- 299
Query: 271 QKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSF 329
+ + HI+ AHA T RL L G QR + SP+ P L +
Sbjct: 300 -----VADPKKPVGGHII-------AHASTTRLSLRKGRGDQRVCKIFDSPSLPELECVY 347
Query: 330 TINPSGIS 337
+I+ GI+
Sbjct: 348 SISEQGIT 355
>gi|448091818|ref|XP_004197422.1| Piso0_004675 [Millerozyma farinosa CBS 7064]
gi|448096395|ref|XP_004198453.1| Piso0_004675 [Millerozyma farinosa CBS 7064]
gi|359378844|emb|CCE85103.1| Piso0_004675 [Millerozyma farinosa CBS 7064]
gi|359379875|emb|CCE84072.1| Piso0_004675 [Millerozyma farinosa CBS 7064]
Length = 355
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 133/331 (40%), Gaps = 67/331 (20%)
Query: 18 IFAARNITTAK-DALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAA 76
+ A + I+ AK D +SL +L+ L SE S SE++C
Sbjct: 71 LLAVKGISEAKADKISLEAAKLVPLGFTTASEFHSRR---SELIC--------------- 112
Query: 77 TEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLD 136
+ T K LD L GGV G +TE+ G TGK+Q C L++ LP GG +
Sbjct: 113 -------ITTGSKQLDTLLGGGVETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGE 165
Query: 137 GGVIYIDVESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEF 189
G +YID E TF R++ + + +++ + ++L L ++E
Sbjct: 166 GKCLYIDTEGTFRPVRLVSIAQRYGLNPDDCLDNVAYARAYNADHQFQLLNLAAQMMAE- 224
Query: 190 TESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSR 246
++ LL++DS+ +L + R + Q ++ ++ + LA+
Sbjct: 225 -------------SRFSLLIVDSIMSLYRTDYSGRGELSARQSHVAKYMRTLQRLADEFG 271
Query: 247 IPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL- 305
I +V+TNQV Q S ++ +K + G AH+ T RL
Sbjct: 272 IAVVITNQVVAQVDGASAMFNPDPKK----------------PIGGNIIAHSSTTRLSFK 315
Query: 306 EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ K+ R V SP P F I GI
Sbjct: 316 KGKAETRICKVYDSPCLPESECVFAIYEDGI 346
>gi|350590542|ref|XP_003483087.1| PREDICTED: hypothetical protein LOC100737799, partial [Sus scrofa]
Length = 385
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 12/131 (9%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH + T LD L GGVP +TE+ G G GKTQ C++L++
Sbjct: 37 TALELLEQ----EHTQSFIITFCSALDNILGGGVPLTKITEICGAPGVGKTQLCMQLAVD 92
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
+P +GG++G ++ID E +F R++++ + + G E QP +
Sbjct: 93 VQIPECFGGVEGEAVFIDTEGSFMVNRVVDLATACIQHLHLIAGTHMEEE------QPKA 146
Query: 186 LSEFTESLEKI 196
L +FT LE I
Sbjct: 147 LQDFT--LENI 155
>gi|358255195|dbj|GAA56912.1| DNA repair protein RAD51 homolog 3, partial [Clonorchis sinensis]
Length = 1681
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 23 NITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGG 82
++ A+DAL + L D E S + S L V P L +T +
Sbjct: 1355 DLDAARDALHVVH-RYQDLADFEESGISSFLRDV-----PTAYELLNAFASPQSTTVIPD 1408
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ + + D L GG P G +TEL G G GKTQFC++ L LP +GGL+G ++I
Sbjct: 1409 FIVSMCRSFDEMLGGGFPTGRLTELCGEPGVGKTQFCIQTCLTVQLPRWFGGLEGEAVFI 1468
Query: 143 DVESTFTSRRMIEMGAS 159
D E F RR +M S
Sbjct: 1469 DSEGNFVPRRAKQMAES 1485
>gi|195349890|ref|XP_002041475.1| GM10376 [Drosophila sechellia]
gi|194123170|gb|EDW45213.1| GM10376 [Drosophila sechellia]
Length = 270
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKVERQYAQRVPEF-----KAHKMLHKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDS----MEALVPGVHE-----------QRAPGQHPLSW 233
+ +KL+VIDS + L G H +R QH L+W
Sbjct: 166 DHPDIKLIVIDSLAFTLRMLEDGAHRYELLLELHESMRRLQRQHELAW 213
>gi|397779635|ref|YP_006544108.1| DNA repair and recombination protein radA [Methanoculleus
bourgensis MS2]
gi|396938137|emb|CCJ35392.1| DNA repair and recombination protein radA [Methanoculleus
bourgensis MS2]
Length = 324
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 127/282 (45%), Gaps = 35/282 (12%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++++R + L +P D + GG+ +TE+ G G+GK+Q +++
Sbjct: 66 FKTGRDILDKRKDVKKLKTLVPE----FDELVGGGLETQAITEVYGEFGSGKSQLVHQMA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGL G VIY+D E+TF R+ +M + PE G +E+ RI V +
Sbjct: 122 VNVQLPEESGGLHGSVIYVDTENTFRPERIEQM-VNGLPEDV-DLGELEEILERIHVARA 179
Query: 184 TSLSE---FTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHI 235
S ++ ++ L ++ V+L VIDS+ +L + R A Q L+ H+
Sbjct: 180 HSSDHQMLLLDTARELANDLRNSEYPVRLFVIDSLTSLFRSEYAGRGTLAARQQKLNRHM 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHW 295
+ L + +VTNQV + + L+ D T+ + G
Sbjct: 240 HDLLKLIDDHNAVGLVTNQVMS---NPAVLF-----------GDPTK------PIGGNIV 279
Query: 296 AHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
H T RL L ++K G+R + SP P +F + +G+
Sbjct: 280 GHTATFRLYLRKSKGGKRVARLVDSPNLPEGEAAFMVEQAGL 321
>gi|209946388|gb|ACI97425.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 103/247 (41%), Gaps = 43/247 (17%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKTQ L+LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEAL--VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+IDS+ A+ + + +RA L+ + S A+ +V NQV
Sbjct: 211 IIDSVAAIFRLYXXYLERARHMRRLA---DALLSYADKYNCAVVCVNQV----------- 256
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-----EAKSGQRFMNVEK--- 318
TR + LG WAH RL + + + G + + V K
Sbjct: 257 -------------ATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEI 303
Query: 319 --SPTSP 323
SP +P
Sbjct: 304 LYSPETP 310
>gi|24650551|ref|NP_733200.1| spindle D [Drosophila melanogaster]
gi|17945461|gb|AAL48784.1| RE19845p [Drosophila melanogaster]
gi|23180023|gb|AAN14399.1| spindle D [Drosophila melanogaster]
gi|30060286|gb|AAP13056.1| spindle D [Drosophila melanogaster]
gi|220948130|gb|ACL86608.1| spn-D-PA [synthetic construct]
gi|220957374|gb|ACL91230.1| spn-D-PA [synthetic construct]
Length = 270
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKLERQYAHRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDS----MEALVPGVHE-----------QRAPGQHPLSW 233
+ +KL+VIDS + L G H +R QH L+W
Sbjct: 166 DHPDIKLIVIDSLAFTLRMLEDGAHRYEMLLELHESMRRLQRQHELTW 213
>gi|386363695|emb|CCC21080.1| putative rad51 protein, partial [Rhizophagus clarus]
Length = 233
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 105/257 (40%), Gaps = 36/257 (14%)
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGK+Q C +S+ LP GG +G +YID E TF R++
Sbjct: 1 GGIETGSITEIFGEFRTGKSQICHTMSVACQLPIELGGAEGRCVYIDTEGTFRPERLV-- 58
Query: 157 GASSFPEIFHSKGMAQEMAGRILVL--------QPTSLSEFTESLEKIKVSLLQNQVKLL 208
S E F G+ E A + + Q T L + + +L + + L+
Sbjct: 59 ---SIAERF---GLVSEDALDNVAIARAYNTDHQMTLLLHAAAMMAESSYALFEIRFALM 112
Query: 209 VIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
++DS AL R A Q L+ + + LA+ I +V+TNQV + +
Sbjct: 113 IVDSATALYRTDFSGRGELAARQMHLAKFLRNLQRLADEFGIAVVITNQVVASVDGAASM 172
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPP 324
+ +K + G AH T RL L G+ R + SP P
Sbjct: 173 FGGDTKK----------------PIGGNIIAHTSTTRLYLRKGKGECRICKIYDSPCLPE 216
Query: 325 LAFSFTINPSGISLLTD 341
+F I+ GI D
Sbjct: 217 GDATFAISDGGIVDAND 233
>gi|425774458|gb|EKV12765.1| DNA repair protein RAD51, putative [Penicillium digitatum PHI26]
Length = 615
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 108/254 (42%), Gaps = 30/254 (11%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID E TF
Sbjct: 375 KRLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTF 434
Query: 149 TSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKL 207
R++ + G+ +E+ + + + + L + + + + L
Sbjct: 435 RPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSL 486
Query: 208 LVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDES 263
LV+DS +L R A Q L+ + + LA+ I +V+TNQV Q S
Sbjct: 487 LVVDSATSLYRTDFNGRGELASRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPS 546
Query: 264 CLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTS 322
++ +K + G AHA T RL L+ G+ R + SP
Sbjct: 547 AMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCL 590
Query: 323 PPLAFSFTINPSGI 336
P F IN +GI
Sbjct: 591 PESDCLFAINDNGI 604
>gi|346320802|gb|EGX90402.1| DNA repair protein RAD51 [Cordyceps militaris CM01]
Length = 348
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 126/291 (43%), Gaps = 34/291 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + ++R +E + + T K LD L GG+ G VTEL G
Sbjct: 76 LAEASKLVPMGFTTATEMHQRR--SELI--SITTGSKNLDTLLAGGIETGSVTELFGEFR 131
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ A+ F G++
Sbjct: 132 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAT-ANRF-------GLSG 183
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQ 228
+E+ + + + + L + + + + LL++DS AL R Q
Sbjct: 184 EEVLDNVAYARAYNSDHQLQLLNQAATMMCETRFSLLIVDSATALYRTDFCGRGELSNRQ 243
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHI 287
L+ + + LA+ + +V+TNQV Q S ++ +K
Sbjct: 244 THLAKFMRTLQRLADEFGVAVVITNQVVAQVDGGPSAMFNPDPKK--------------- 288
Query: 288 VAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T R+ L+ G+ R + SP P F I GI
Sbjct: 289 -PIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDTLFAIGEDGIG 338
>gi|354505335|ref|XP_003514726.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Cricetulus griseus]
Length = 340
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A +E++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANELIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|68071341|ref|XP_677584.1| Rad51 [Plasmodium berghei strain ANKA]
gi|56497754|emb|CAH95058.1| Rad51 homolog, putative [Plasmodium berghei]
Length = 349
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 107/259 (41%), Gaps = 30/259 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
T K LDA L GG+ G +TEL G TGK+Q C L++ LP G +G ++ID
Sbjct: 111 FTTGSKQLDALLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWID 170
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + A + H + I + + TE L +
Sbjct: 171 TEGTFRPERIVAI-AKRYG--LHP----TDCLNNIAYAKAYNCDHQTELLIDASAMMADT 223
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ LL++DS AL + R A Q L + + +A+ + +++TNQV
Sbjct: 224 RFALLIVDSATALYRSEYTGRGELANRQSHLCRFLRGLQRIADIYGVAVIITNQV----- 278
Query: 261 DESCLYPFQVQKMDRILKDRTRYYSH-IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
V K+D + + + H + + G AHA RL L G+ R +
Sbjct: 279 ---------VAKVDAM----SMFGGHEKIPIGGNIIAHASQTRLYLRKGRGESRICKIYD 325
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP P F I GI+
Sbjct: 326 SPVLPEGEAVFAITEGGIA 344
>gi|82539154|ref|XP_723988.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478474|gb|EAA15553.1| Rad51 homolog [Plasmodium yoelii yoelii]
Length = 352
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 106/254 (41%), Gaps = 30/254 (11%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LDA L GG+ G +TEL G TGK+Q C L++ LP G +G ++ID E TF
Sbjct: 119 KQLDALLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTF 178
Query: 149 TSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLL 208
R++ + A + H + I + + TE L + + LL
Sbjct: 179 RPERIVAI-AKRYG--LHP----TDCLNNIAYAKAYNCDHQTELLIDASAMMADTRFALL 231
Query: 209 VIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
++DS AL + R A Q L + + +A+ + +++TNQV
Sbjct: 232 IVDSATALYRSEYTGRGELANRQSHLCRFLRGLQRIADIYGVAVIITNQV---------- 281
Query: 266 YPFQVQKMDRILKDRTRYYSH-IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSP 323
V K+D + + + H + + G AHA RL L G+ R + SP P
Sbjct: 282 ----VAKVDAM----SMFGGHEKIPIGGNIIAHASQTRLYLRKGRGESRICKIYDSPVLP 333
Query: 324 PLAFSFTINPSGIS 337
F I GI+
Sbjct: 334 EGEAVFAITEGGIA 347
>gi|115394440|gb|ABI97152.1| Rad51 [Pneumocystis murina]
gi|115394442|gb|ABI97153.1| Rad51 [Pneumocystis murina]
Length = 343
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 109/259 (42%), Gaps = 29/259 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 104 ITTGSKQLDTLLAGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLYID 163
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + + + G +E+ + + + + L + + ++
Sbjct: 164 TEGTFRPTRLL-----AVADRYGLNG--EEVLDNVAYARAYNADHQLQLLGQAANMMAES 216
Query: 204 QVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LL++DS +L G E A H L+ + + LA+ I +V+TNQV Q
Sbjct: 217 RFSLLIVDSATSLYRTDFAGRGELSARQMH-LAKFLRTLQRLADEYGIAVVITNQVVAQV 275
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
+ ++ +K + G AH+ T RL L G QR +
Sbjct: 276 DGNASMFNPDPKK----------------PIGGNIIAHSSTTRLSLRKGRGEQRICKIYD 319
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP F I G+
Sbjct: 320 SPCLAEADAVFAITNGGVD 338
>gi|295669710|ref|XP_002795403.1| DNA repair protein RAD51 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285337|gb|EEH40903.1| DNA repair protein RAD51 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 348
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 123/291 (42%), Gaps = 34/291 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S+IV F TA + +R T+ + + T K LD L GG+ G +TE+ G
Sbjct: 76 LAEASKIVPMGFTTATEMHARR--TDLI--CITTGSKQLDTLLAGGIETGSITEIFGEFR 131
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G ++ID E TF R++ + G+A
Sbjct: 132 TGKSQICHTLAVTCQLPFDMGGGEGKCLFIDTEGTFRPTRLL--------SVAQRYGLAG 183
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQ 228
+E+ I + + + L + + + + LL++DS AL R Q
Sbjct: 184 EEVLDNIAYARAYNSDHQLQLLNQASQMMCETRFSLLIVDSATALYRTDFSGRGELSNRQ 243
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHI 287
L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 244 IHLAKFMRALRRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK--------------- 288
Query: 288 VAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L+ G+ R + SP P F I GI
Sbjct: 289 -PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIGEDGIG 338
>gi|359417899|ref|ZP_09209946.1| DNA repair and recombination protein RadB [Candidatus Haloredivivus
sp. G17]
gi|358031752|gb|EHK00609.1| DNA repair and recombination protein RadB [Candidatus Haloredivivus
sp. G17]
Length = 227
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 36/216 (16%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
+D L GG+ G++T + G +GTGKT FC++ +AA A GG V YID E F+
Sbjct: 13 IDDFLQGGIEKGIITNVYGESGTGKTAFCIQ---VAAEVAQNGGK---VAYIDTEGGFSP 66
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQ-PTSLSEFTESLEKIKVSLLQNQVKLLV 209
RM K MA E A LV++ P E++++++ + + + L++
Sbjct: 67 ERM--------------KQMADEDALENLVIKNPVDFKGQEETIDELEALVEKEGIDLVI 112
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS +L V G + + LS +S ++ +A IP+++TNQV
Sbjct: 113 VDSAVSLYRLKVNG--DNASEINQRLSQQLSELSKIARTQNIPVMITNQV---------Y 161
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTI 301
F + ++ + +D +Y+S + L + + + I
Sbjct: 162 TSFDEEDLELVGRDVPKYWSKCLIKLSENSSRKMEI 197
>gi|303284847|ref|XP_003061714.1| DMC1 DNA recombinase [Micromonas pusilla CCMP1545]
gi|226457044|gb|EEH54344.1| DMC1 DNA recombinase [Micromonas pusilla CCMP1545]
Length = 371
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 125/308 (40%), Gaps = 37/308 (12%)
Query: 36 LELMKLLDVELSE-VRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAA 94
+E+ + D ++ + + +A L+ FQTA L R ++ T +D
Sbjct: 89 IEIKGMSDAKVDKMIEAAGKLLGPGAAGGFQTAKELQLSRKDNVNITSGAET----IDNV 144
Query: 95 LCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMI 154
L GG P +TE+ G TGKTQ C L++ LP + GG V +ID E TF R+
Sbjct: 145 LKGGFPTRCLTEIYGEWRTGKTQICHTLAVTTQLPLNEGGGCAKVAWIDTEGTFRPDRI- 203
Query: 155 EMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSME 214
E F+ A+ + ILV + + T L + + KLL+IDS+
Sbjct: 204 ----EKIAERFNLD--AEAVLDNILVAKTFTHEMMTNCLVALAARFSEEPFKLLIIDSIM 257
Query: 215 ALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVR--PQSHDESCLYPFQ 269
A R + Q L S + +A+ I +V TNQV+ P + + P +
Sbjct: 258 AHFRVDFTGRGELSERQQKLGQFCSKLQKIADEFNIAVVYTNQVQADPSGMSFAGMDPKK 317
Query: 270 VQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL-VLEAKSGQRFMNVEKSPTSPPLAFS 328
A+ G AHA TIRL V + + R + V +P
Sbjct: 318 -------------------AIGGHVLAHASTIRLSVRKGRGDNRILKVVDAPNLKEADAE 358
Query: 329 FTINPSGI 336
FTI G+
Sbjct: 359 FTITDGGV 366
>gi|257077010|ref|ZP_05571371.1| DNA repair and recombination protein RadA [Ferroplasma acidarmanus
fer1]
Length = 335
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 116/277 (41%), Gaps = 35/277 (12%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++++R L T +GLD + GG+ +TE G G+GKTQ L+L+
Sbjct: 86 FETGEEILKRRKEVRKL----STGAQGLDNLIGGGLETQSITEFFGEFGSGKTQIMLQLA 141
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ A +P GGL+ V+ ID E+TF R+I+M + + E RI V +
Sbjct: 142 VNATMPEEQGGLNSDVLIIDTENTFRPERVIQMAKAKNLD-------PDETLKRIHVARA 194
Query: 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240
+ EK + +KLL++DS+ + + R A Q L+ H+ +
Sbjct: 195 YNAHHQILLAEKASDIAKEFPIKLLIVDSLTSHFRSEYVGRGSLAERQQLLNKHMHDLLK 254
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
I VTNQV S + + + + + G H T
Sbjct: 255 FGTIFNAVIAVTNQV---SANPAVFFG-----------------DPMTPIGGNIVGHTAT 294
Query: 301 IRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
RL L +AK+G+R + SP P T+ GI
Sbjct: 295 FRLYLRKAKAGKRIARLIDSPYLPEGEAVITLTEDGI 331
>gi|340056261|emb|CCC50591.1| putative RAD51/dmc1 protein [Trypanosoma vivax Y486]
Length = 352
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 102/251 (40%), Gaps = 30/251 (11%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGV +TE G TGKTQ L + LP GG +G +Y+D ESTF
Sbjct: 122 LDQLLGGGVESMSITEAFGEFRTGKTQIAHTLCVTCQLPLSMGGGNGKAVYVDTESTFRP 181
Query: 151 RRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
R+ E F G+ + I+V + + L + + + Q LLV
Sbjct: 182 ERI-----KPIAERF---GLDVDAVLANIIVARAYTHEHQMHLLSMVAAKMAEEQFSLLV 233
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS+ AL R A Q L+ +S + LAE + + +TNQV S
Sbjct: 234 VDSITALFRVDFSGRGELAERQQKLAKMLSSLIKLAEEYNVAVYITNQVVADPGGASMF- 292
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPL 325
+ + HI+ AHA T RL L G QR + SP+ P
Sbjct: 293 ---------VADPKKPVGGHIL-------AHASTTRLSLRKGRGDQRICKIYDSPSLPET 336
Query: 326 AFSFTINPSGI 336
F+I+ GI
Sbjct: 337 ECVFSISEQGI 347
>gi|430812161|emb|CCJ30383.1| unnamed protein product [Pneumocystis jirovecii]
Length = 347
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 109/259 (42%), Gaps = 29/259 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 108 ITTGSKQLDTLLAGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLYID 167
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + + + G +E+ + + + + L + + ++
Sbjct: 168 TEGTFRPTRLL-----AVADRYGLNG--EEVLDNVAYARAYNADHQLQLLGQAANMMAES 220
Query: 204 QVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LL++DS +L G E A H L+ + + LA+ I +V+TNQV Q
Sbjct: 221 RFSLLIVDSATSLYRTDFAGRGELSARQMH-LAKFLRTLQRLADEYGIAVVITNQVVAQV 279
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
+ ++ +K + G AH+ T RL L G QR +
Sbjct: 280 DGNASMFNPDPKK----------------PIGGNIIAHSSTTRLSLRKGRGEQRICKIYD 323
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP F I G+
Sbjct: 324 SPCLAEADAVFAITNGGVD 342
>gi|405118075|gb|AFR92850.1| recombinase [Cryptococcus neoformans var. grubii H99]
Length = 348
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 105/260 (40%), Gaps = 30/260 (11%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T GLD L GG+ G +TEL G TGK+Q C L++ LP GG +G +YI
Sbjct: 107 HITTGSTGLDTILGGGIETGAITELYGEFRTGKSQLCHTLAVTCQLPVSMGGGEGKCLYI 166
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E TF RM+ + E + G +E+ I + + + L + + +
Sbjct: 167 DTEGTFRPVRML-----AVAERYGLDG--EEVLDNIAYARAYNADHQLQLLVQASAMMAE 219
Query: 203 NQVKLLVIDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
++ LL++DS +L G E A H + +L+ EF +V V
Sbjct: 220 SRFSLLIVDSCTSLYRTDFSGRGELSARQMHLAKFLRTLMRLADEFGVAVVVTNQVVAQV 279
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVE 317
+ F V + + G AHA T RL L G R +
Sbjct: 280 DGGQ-----FAVADAKK-------------PIGGNIMAHASTTRLNLRKGRGTSRVCKIV 321
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F INP+GI
Sbjct: 322 DSPCLPEAEAIFAINPNGIG 341
>gi|374628649|ref|ZP_09701034.1| DNA repair and recombination protein RadA [Methanoplanus limicola
DSM 2279]
gi|373906762|gb|EHQ34866.1| DNA repair and recombination protein RadA [Methanoplanus limicola
DSM 2279]
Length = 324
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 119/288 (41%), Gaps = 47/288 (16%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T +++E+R L +P D L GG ++E G G+GK+Q +L+
Sbjct: 66 FKTGTIVLEERKKVRKLSTLVPE----FDDLLAGGFETMSISECYGEFGSGKSQISHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM-----------GASSFPEIFHSKGMAQ 172
+ + LP GGLDG VIYID E+TF R+ +M F E H +A+
Sbjct: 122 VNSQLPLEVGGLDGSVIYIDTENTFRPERIRQMVEGLELDIEVPPVEDFLEHIH---VAE 178
Query: 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQH 229
+L S+ E L+ V+L+V+DS+ A + R Q
Sbjct: 179 AFTSDHQMLLAESVRELGNELKDT-----DKPVRLIVVDSLMAHFRAEYAGRGTLSVRQQ 233
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVA 289
L+ H+ + LA+ ++VTNQV+ D T+
Sbjct: 234 KLNKHMYDLAKLAKEFNAVVLVTNQVQSNPA--------------VFFGDPTK------P 273
Query: 290 VLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G HA R+ L ++K G+R + SP P +F++ +G+
Sbjct: 274 TGGNIVGHASKYRIYLRKSKGGKRVAKLVDSPDLPDGEAAFSVEMAGL 321
>gi|119614837|gb|EAW94431.1| RAD51 homolog C (S. cerevisiae), isoform CRA_b [Homo sapiens]
Length = 305
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 33/212 (15%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 86 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 141
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 142 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTL 201
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLL--QNQVKLLVIDSMEALVPGVHEQRAPGQHP 230
IL + ++TE L ++ + L ++V+L+++D + P H+
Sbjct: 202 DNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----LDD 254
Query: 231 LSWHISLIT-------SLAEFSRIPIVVTNQV 255
LS L+ SLA R+ +++TNQ+
Sbjct: 255 LSLRTRLLNGLAQQMISLANNHRLAVILTNQM 286
>gi|88604173|ref|YP_504351.1| DNA repair and recombination protein RadA [Methanospirillum
hungatei JF-1]
gi|88189635|gb|ABD42632.1| DNA repair and recombination protein RadA [Methanospirillum
hungatei JF-1]
Length = 407
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 124/287 (43%), Gaps = 47/287 (16%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T + EQR + L +P +D L GG +TE+ G G+GK+Q +++
Sbjct: 151 FKTGTDVFEQRLKVKKLRTLVPE----VDELLGGGFETQAITEMYGEFGSGKSQIVHQMA 206
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM-------GASSFPEIFHSK---GMAQE 173
+ LP GGL+G VIY+D E+TF R+ +M GA P+ F AQ
Sbjct: 207 VNVQLPEELGGLNGSVIYVDTENTFRPERIEQMVKGLEIEGAD--PQEFLKNIHVARAQT 264
Query: 174 MAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHP 230
++L+++ + E E++K + VKL+++DS+ L + R A Q
Sbjct: 265 SDHQMLLIETSR-----ELAEELKAA--GKPVKLVIVDSLTGLFRSEYAGRGTLAERQQK 317
Query: 231 LSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
L+ H+ I L + +VTNQV+ D T+ +
Sbjct: 318 LNRHMHDIFKLCDEYNAIGLVTNQVQSNPA--------------VFFGDPTK------PI 357
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G H T R+ L ++K G+R + SP P +F + G+
Sbjct: 358 GGNIVGHTATFRVYLRKSKGGKRIFRLVDSPNLPEGEATFLVEEGGL 404
>gi|449265652|gb|EMC76815.1| Meiotic recombination protein DMC1/LIM15 like protein, partial
[Columba livia]
Length = 346
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 127/302 (42%), Gaps = 37/302 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 71 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 123
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 124 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGSNGYTGGKIIFIDTENTFRPDRLRDI-ADR 182
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 183 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 236
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 237 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 293
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 294 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 339
Query: 335 GI 336
GI
Sbjct: 340 GI 341
>gi|195574316|ref|XP_002105135.1| GD21329 [Drosophila simulans]
gi|194201062|gb|EDX14638.1| GD21329 [Drosophila simulans]
Length = 267
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 28/168 (16%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKLERQYAHRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDS----MEALVPGVHE-----------QRAPGQHPLSW 233
+ +KL+VIDS + L G H +R QH L+W
Sbjct: 166 DHPDIKLIVIDSLAFTLRMLEDGAHRYELLLELHESMRRLQRQHELAW 213
>gi|358372925|dbj|GAA89526.1| DNA repair protein RAD51 [Aspergillus kawachii IFO 4308]
Length = 347
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 109/260 (41%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 102 ITTGSKQLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 161
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 162 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 213
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LLV+DS +L R + Q L+ + + LA+ I +V+TNQV Q
Sbjct: 214 TRFSLLVVDSATSLYRTDFNGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQV 273
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 274 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRVCKIY 317
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 318 DSPCLPESDCLFAINEDGIG 337
>gi|145239409|ref|XP_001392351.1| DNA repair protein rhp51 [Aspergillus niger CBS 513.88]
gi|134076861|emb|CAK48229.1| unnamed protein product [Aspergillus niger]
Length = 347
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 109/260 (41%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 102 ITTGSKQLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 161
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 162 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 213
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LLV+DS +L R + Q L+ + + LA+ I +V+TNQV Q
Sbjct: 214 TRFSLLVVDSATSLYRTDFNGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQV 273
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 274 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRVCKIY 317
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 318 DSPCLPESDCLFAINEDGIG 337
>gi|115394436|gb|ABI97150.1| Rad51 [Pneumocystis carinii]
gi|115394438|gb|ABI97151.1| Rad51 [Pneumocystis carinii]
Length = 343
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 109/259 (42%), Gaps = 29/259 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 104 ITTGSKQLDTLLAGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLYID 163
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + + + G +E+ + + + + L + + ++
Sbjct: 164 TEGTFRPTRLL-----AVADRYGLNG--EEVLDNVAYARAYNADHQLQLLGQAANMMAES 216
Query: 204 QVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LL++DS +L G E A H L+ + + LA+ I +V+TNQV Q
Sbjct: 217 RFSLLIVDSATSLYRTDFAGRGELSARQMH-LAKFLRTLQRLADEYGIAVVITNQVVAQV 275
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
+ ++ +K + G AH+ T RL L G QR +
Sbjct: 276 DGNASMFNPDPKK----------------PIGGNIIAHSSTTRLSLRKGRGEQRICKIYD 319
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP F I G+
Sbjct: 320 SPCLAEADAVFAITNGGVD 338
>gi|449481824|ref|XP_002195715.2| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Taeniopygia guttata]
Length = 339
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 128/303 (42%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A +++V P F TA E+R + H+ T + D L GG+
Sbjct: 64 LSEAKVDKIKEA---ANKLVEPGFLTAFEYSEKR----KMVFHVSTGSQEFDKLLGGGIE 116
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 117 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGPNGYTGGKIIFIDTENTFRPDRLRDI-ADR 175
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 176 F-NVDH-----EAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 229
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 230 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 286
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 287 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 332
Query: 335 GIS 337
GI
Sbjct: 333 GIG 335
>gi|408382488|ref|ZP_11180032.1| DNA repair and recombination protein RadB [Methanobacterium
formicicum DSM 3637]
gi|407814843|gb|EKF85466.1| DNA repair and recombination protein RadB [Methanobacterium
formicicum DSM 3637]
Length = 232
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 18/187 (9%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G +PT +D+ + GGV G +T+ GP G+GKT L L + A G I+
Sbjct: 12 GKIPTSSP-IDSLIGGGVEKGCITQFYGPPGSGKTNITLNLLVQNAKNGKSG------IF 64
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI-KVSL 200
+D E + R+ ++ S F E+A I+V +P++ +E +L +I K+
Sbjct: 65 VDTEGGLSIERVKQLAGSDF----------NELASNIIVFEPSTFTEQDSTLRRIEKMVE 114
Query: 201 LQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
++V L+++DS AL + L + L+T LA I +V+TNQV
Sbjct: 115 SGDKVDLVILDSAVALYRVRDGDSSQINLELGRQMGLLTRLARKHDIAVVITNQVYASFE 174
Query: 261 DESCLYP 267
E + P
Sbjct: 175 GEGMVEP 181
>gi|406602980|emb|CCH45448.1| hypothetical protein BN7_5030 [Wickerhamomyces ciferrii]
Length = 372
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 130/314 (41%), Gaps = 45/314 (14%)
Query: 18 IFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAAT 77
IF R+I+T D L+ + +EL L++ LS+++ ++++ L+ +
Sbjct: 24 IFTTRSISTI-DILTTSPIELSNQLNISLSQIQKFISILKIQTNKQLGDDLIKGDDINQE 82
Query: 78 EHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDG 137
G L D L GG+ G++TE+ G + T K+QF ++L+ L GGL G
Sbjct: 83 VFTTGDLE-----FDKILNGGLRTGMITEIFGESSTAKSQFSMQLTKTINLSPDQGGLGG 137
Query: 138 GVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIK 197
+YI E ++R+IE+ +++ E IL K++
Sbjct: 138 NSVYISTEGNLETKRLIEINP-GIENVYYINCSDFETQEHIL---------------KVQ 181
Query: 198 VSLL----QNQVKLLVIDSME-----ALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ LL + ++L++IDS+ L+ +E Q L + L I
Sbjct: 182 LPLLLKDPEKNIRLVIIDSISHHLRVELLNSNYENFNKNQIILQNLGIYLNKLCTDFNIS 241
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMD--------------RILKDRTRYYSHIVAVLGFH 294
+++TNQ+ + F+ MD R +D + + LG +
Sbjct: 242 MILTNQISDKPDSNILNTNFKKISMDYQIGWLSGWSSQDIRNRQDNEFQLNSKIPTLGLN 301
Query: 295 WAHAVTIRLVLEAK 308
W++ + +R++L+
Sbjct: 302 WSNLINVRILLKKN 315
>gi|393186133|gb|AFN02862.1| putative DNA repair protein RAD51 [Phakopsora pachyrhizi]
Length = 340
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 14/221 (6%)
Query: 38 LMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCG 97
L+ + + ++ LA+ ++++ F TA + +RA+ H+ T K LD L G
Sbjct: 60 LLSIKGISEAKADKLLAICNQLIPLGFTTAAEVHNRRASMIHI----TTGSKNLDTMLGG 115
Query: 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157
G+ +TE G TGK+Q C LS+ LP+ GG +G ++ID E TF R++
Sbjct: 116 GIDTQSITEFYGEFRTGKSQLCHHLSVTCQLPSDMGGGEGKCMFIDTEGTFRPERVL--- 172
Query: 158 ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217
+ E + G E+ I V + + + L + ++ +L++DS AL
Sbjct: 173 --AIAERYGLDG--DEVLNNIAVARAYNSDHQAQLLRDASRLMTLSRFAILIVDSATALY 228
Query: 218 PGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
+ R A Q L+ + LAE I +V+TNQV
Sbjct: 229 RTDYSGRGELADRQAHLAKFLRGCLGLAEQFGIAVVITNQV 269
>gi|336272433|ref|XP_003350973.1| RAD51 protein [Sordaria macrospora k-hell]
gi|380090740|emb|CCC04910.1| putative RAD51 protein [Sordaria macrospora k-hell]
Length = 353
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 127/291 (43%), Gaps = 36/291 (12%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + ++R +E + + T K LD L GG+ G VTE+ G
Sbjct: 79 LAEASKLVPMGFTTATEMHQRR--SELI--SITTGSKNLDTLLAGGIETGSVTEIFGEFR 134
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + + G++
Sbjct: 135 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLL--------AVANRYGLSG 186
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP----GVHEQRAPG 227
+E+ + + + + L + + + + LL++DS +L G E +
Sbjct: 187 EEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFLGRGELSSRQ 246
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSH 286
H L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 247 TH-LAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK-------------- 291
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AHA T R+ L+ G+ R + SP P F I GI
Sbjct: 292 --PIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDCLFAIQEDGI 340
>gi|340992754|gb|EGS23309.1| hypothetical protein CTHT_0009770 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 354
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 128/292 (43%), Gaps = 36/292 (12%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + ++R +E + + T K LD L GG+ G VTE+ G
Sbjct: 80 LAEASKLVPMGFTTATEMHQRR--SELI--CITTGSKNLDNLLAGGIETGSVTEIFGEFR 135
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + + G++
Sbjct: 136 TGKSQICHTLAVTCQLPFEMGGGEGKCLYIDTEGTFRPVRLL--------AVANRYGLSG 187
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP----GVHEQRAPG 227
+E+ + + + + L + + + + L+++DS AL G E +
Sbjct: 188 EEVLDNVAYARAYNCDHQLQLLNQAAAMMCETRFSLVIVDSATALYRTDFVGRGELSSRQ 247
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSH 286
H L+ + + LA+ + +V+TNQV Q + ++ +K
Sbjct: 248 TH-LAKFMRTLQRLADEFGVAVVITNQVVSQVDGGPASMFNPDPKK-------------- 292
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T R+ L+ G+ R + SP P F IN GI
Sbjct: 293 --PIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDCLFAINEDGIG 342
>gi|90969172|gb|ABE02571.1| RAD51D splice variant b [Arabidopsis thaliana]
gi|90969181|gb|ABE02659.1| RAD51D splice variant b [Arabidopsis thaliana]
Length = 232
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 25/226 (11%)
Query: 17 NIFAARNITTAKDAL--SLTELELMKLLDVELSEVRSALALVSEIV---CPPFQTALLLM 71
+ A+ I T +D L L EL ++ + L+ ++ C P L L+
Sbjct: 20 DFCASHGILTIEDFLLHDLYELTAFSQRQTNADRLKEGITLILSLIERQCRPLVNGLKLL 79
Query: 72 EQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAH 131
E +H L T K D+ L GG G +TELVGP+ +GKTQFC++ AA
Sbjct: 80 EDLHRNKHT---LSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQFCMQ----AAASVA 132
Query: 132 YGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTE 191
L G V+Y+D ++F++RR+ + SS + Q++ RIL + +
Sbjct: 133 ENHL-GRVLYLDTGNSFSARRIAQFICSS-----SDATLGQKVMSRILCHTVYDIYTLFD 186
Query: 192 SLEKIKVSLL------QNQVKLLVIDSMEALV-PGVHEQRAPGQHP 230
+L+ ++++L +++++LLV+DS+ +L+ P + + G +P
Sbjct: 187 TLQDLEITLRLQMNVNESRLRLLVVDSISSLITPILGGSGSQGTYP 232
>gi|331239939|ref|XP_003332621.1| DNA repair protein RAD51 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309311611|gb|EFP88202.1| DNA repair protein RAD51 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 343
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 14/221 (6%)
Query: 38 LMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCG 97
L+ + + ++ L++ ++V F TA + +R+ H+ T K LD L G
Sbjct: 63 LLAIKGISEAKADKLLSICHQLVPLGFTTAAEIHNRRSVMIHI----TTGSKNLDTMLGG 118
Query: 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157
G+ +TE G TGK+Q C L++ LPA+ GG +G ++ID E TF R++
Sbjct: 119 GIDTQSITEFYGEFRTGKSQLCHHLAVSCQLPANMGGGEGKCMFIDTEGTFRPERIL--- 175
Query: 158 ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217
+ E + G +E+ I V + + ++ L + + ++ +L++DS AL
Sbjct: 176 --AIAERYGMDG--EEVLNNIAVARAYNSDHQSQLLREASRLMTLSRFAILIVDSATALY 231
Query: 218 PGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
+ R A Q L+ + LAE I +VVTNQV
Sbjct: 232 RTDYSGRGELADRQAHLAKFLRGCLGLAEQFGIAVVVTNQV 272
>gi|442535550|gb|AGC52848.1| XRCC3, partial [Macrobiotus cf. harmsworthi EABP-2013]
Length = 230
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 67/129 (51%), Gaps = 11/129 (8%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD GG+ + E G AG+GKTQ CL+L+ A LP GGL+G V+YI E+ F +
Sbjct: 56 LDRFFRGGLRLEHLVEFTGLAGSGKTQICLQLATTAQLPEEKGGLNGDVLYIFTENNFPA 115
Query: 151 RRMIEMGASSFPEIFHSKGMAQEM-----AGRILVLQPTSLSEFTESLE-KIKVSLLQNQ 204
R++E+ E S MAQ RI V + + E LE K+ L Q
Sbjct: 116 GRLVEI-----VEYRKSLSMAQSFPSVPSTDRIFVEHLDTYEKLEEFLEGKVYGMLSQKP 170
Query: 205 VKLLVIDSM 213
+KLL+IDS+
Sbjct: 171 IKLLIIDSI 179
>gi|209946360|gb|ACI97411.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 88/209 (42%), Gaps = 29/209 (13%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKTQ L+LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPF 268
+IDS+ A+ ++ +H +L+ S A+ +V NQV
Sbjct: 211 IIDSVAAIFRLYNDYLERARHMRRLADALL-SYADKYNCAVVCVNQV------------- 256
Query: 269 QVQKMDRILKDRTRYYSHIVAVLGFHWAH 297
TR + LG WAH
Sbjct: 257 -----------ATRDGQDEIPCLGLQWAH 274
>gi|115491377|ref|XP_001210316.1| DNA repair protein RAD51 [Aspergillus terreus NIH2624]
gi|114197176|gb|EAU38876.1| DNA repair protein RAD51 [Aspergillus terreus NIH2624]
Length = 348
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 109/260 (41%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 103 ITTGSKQLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 162
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 163 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 214
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LLV+DS +L R + Q L+ + + LA+ I +V+TNQV Q
Sbjct: 215 TRFSLLVVDSATSLYRTDFNGRGELSSRQTHLAKFLRTLQRLADEFGIAVVITNQVVAQV 274
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 275 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRVCKIY 318
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 319 DSPCLPESDCLFAINEDGIG 338
>gi|1816461|emb|CAB02454.1| uvsC [Emericella nidulans]
gi|259488442|tpe|CBF87878.1| TPA: UvsC protein [Source:UniProtKB/TrEMBL;Acc:P78579] [Aspergillus
nidulans FGSC A4]
Length = 348
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 109/260 (41%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 103 ITTGSKQLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 162
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 163 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 214
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LLV+DS +L R + Q L+ + + LA+ I +V+TNQV Q
Sbjct: 215 TRFSLLVVDSATSLYRTDFNGRGELSTRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQV 274
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 275 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRVCKIY 318
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 319 DSPCLPESDCLFAINEDGIG 338
>gi|119495909|ref|XP_001264730.1| DNA repair protein RAD51, putative [Neosartorya fischeri NRRL 181]
gi|119412892|gb|EAW22833.1| DNA repair protein RAD51, putative [Neosartorya fischeri NRRL 181]
Length = 348
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 109/260 (41%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 103 ITTGSKQLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 162
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 163 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 214
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LLV+DS +L R + Q L+ + + LA+ I +V+TNQV Q
Sbjct: 215 TRFSLLVVDSATSLYRTDFNGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQV 274
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 275 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRVCKIY 318
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 319 DSPCLPESDCLFAINEDGIG 338
>gi|225682824|gb|EEH21108.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb03]
gi|226290270|gb|EEH45754.1| DNA repair protein RAD51 [Paracoccidioides brasiliensis Pb18]
Length = 348
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 123/290 (42%), Gaps = 32/290 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S+IV F TA + +R T+ + + T K LD L GG+ G +TE+ G
Sbjct: 76 LAEASKIVPMGFTTATEMHARR--TDLI--CITTGSKQLDTLLAGGIETGSITEIFGEFR 131
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ 172
TGK+Q C L++ LP GG +G +YID E TF R++ + A + + +
Sbjct: 132 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPIRLLSV-AQRYGLV------GE 184
Query: 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQH 229
E+ I + + + L + + + + LL++DS AL R Q
Sbjct: 185 EVLDNIAYARAYNSDHQLQLLNQASQMMCETRFSLLIVDSATALYRTDFSGRGELSNRQI 244
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHIV 288
L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 245 HLAKFMRALRRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK---------------- 288
Query: 289 AVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L+ G+ R + SP P F I GI
Sbjct: 289 PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIGEDGIG 338
>gi|358389137|gb|EHK26730.1| meiosis defective protein MEI3, partial [Trichoderma virens Gv29-8]
Length = 356
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 126/291 (43%), Gaps = 34/291 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
L S++V F TA + ++R +E + + T K LD L GG+ G VTEL G
Sbjct: 85 LVQASKLVPMGFTTATEMHQRR--SELI--SITTGSKNLDTLLAGGIETGSVTELFGEFR 140
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + A+ F G++
Sbjct: 141 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAV-ANRF-------GLSG 192
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQ 228
+E+ + + + + L + + + + LL++DS +L R Q
Sbjct: 193 EEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFTGRGELSNRQ 252
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHI 287
L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 253 THLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK--------------- 297
Query: 288 VAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T R+ L+ G+ R + SP P F I GI
Sbjct: 298 -PIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDTLFAIGEDGIG 347
>gi|121701915|ref|XP_001269222.1| DNA repair protein RAD51, putative [Aspergillus clavatus NRRL 1]
gi|119397365|gb|EAW07796.1| DNA repair protein RAD51, putative [Aspergillus clavatus NRRL 1]
Length = 347
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 109/260 (41%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 102 ITTGSKQLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 161
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 162 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 213
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LLV+DS +L R + Q L+ + + LA+ I +V+TNQV Q
Sbjct: 214 TRFSLLVVDSATSLYRTDFNGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQV 273
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 274 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRVCKIY 317
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 318 DSPCLPESDCLFAINEDGIG 337
>gi|403216757|emb|CCK71253.1| hypothetical protein KNAG_0G01960 [Kazachstania naganishii CBS
8797]
Length = 329
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 130/332 (39%), Gaps = 51/332 (15%)
Query: 24 ITTAKDALSLTELELMK---LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHL 80
I T LS T L K L +V++ +++ A A + + P T L + QR
Sbjct: 35 IFTVNTVLSTTRRNLCKVRGLSEVKVEKIKEAAAKIVRVGFVP-ATLQLELRQRVIA--- 90
Query: 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVI 140
L T K LDA L GG+ +TE+ G GKTQ L + A LP GG +G V
Sbjct: 91 ---LSTGAKNLDAILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTAQLPREMGGGEGKVA 147
Query: 141 YIDVESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESL 193
YID E TF R+ ++ + I +++ + E E +
Sbjct: 148 YIDTEGTFRPERIRQIAERYELDPDTCLENITYARALNSEHQ--------------MELV 193
Query: 194 EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIV 250
E++ L +L+++DS+ A + R Q L+ H+ + LAE + +
Sbjct: 194 EQLGGELSSGDYRLIIVDSIMANFRVDYCGRGELNERQQRLNQHLFKLNRLAEEFNVAVF 253
Query: 251 VTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG 310
+ NQV+ + +K V G AHA R++L G
Sbjct: 254 MANQVQSDPGASALFASADGRK----------------PVGGHVLAHASATRILLRKGRG 297
Query: 311 -QRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
+R ++ SP P + I GI TD
Sbjct: 298 EERVAKLQDSPDMPERECVYLIGEKGICDATD 329
>gi|296108873|ref|YP_003615822.1| DNA repair and recombination protein RadA [methanocaldococcus
infernus ME]
gi|295433687|gb|ADG12858.1| DNA repair and recombination protein RadA [Methanocaldococcus
infernus ME]
Length = 320
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 120/291 (41%), Gaps = 53/291 (18%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF----C 119
F+ AL ++EQR L T K LD+ L GG+ V E GP G+GKTQ C
Sbjct: 63 FKDALEILEQRKNL----WWLSTGSKNLDSILGGGLESQSVIEFAGPYGSGKTQIAHQAC 118
Query: 120 LKLS----LLAALPAHYGGLDG-GVIYIDVESTFTSRRMIEMGAS---SFPEIFHSKGMA 171
+ L ++A LD +YID E TF R+IEM + E+ + +A
Sbjct: 119 VNLQCPERIIADEKLKEEILDNPKAVYIDTEGTFRPERIIEMAEAIGLDGKEVLKNIKVA 178
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQ 228
+ + +L + E + E I +L+++DS+ + + R A Q
Sbjct: 179 RAYNSDMQMLYAEKVEELIQKGENI---------RLVIVDSLTSTFRTEYTGRGKLAERQ 229
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSH 286
L H++ + LA+ ++VTNQV RP ++ P +
Sbjct: 230 QKLGRHMATLNKLADLYNCVVLVTNQVAARP----DAIFGPAE----------------- 268
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
A+ G HA T R+ L+ G +R + SP P +F I G+
Sbjct: 269 -QAIGGHIVGHAATFRVFLKKTKGDKRLARLYDSPYLPDAETTFRITEKGV 318
>gi|403417754|emb|CCM04454.1| predicted protein [Fibroporia radiculosa]
Length = 345
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 143/334 (42%), Gaps = 44/334 (13%)
Query: 9 MRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTAL 68
++L + N + N+TT + +++K+ + ++V +++ F T L
Sbjct: 45 LKLKAAAINTVSGVNMTTRR--------QMLKIKGMSEAKVEKIKEAAHKVLGSSFATGL 96
Query: 69 LLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
+ E+R + T K +D L GG+ +TE+ G TGKTQ +S++ L
Sbjct: 97 EIQEKRKRVLMV----STGSKSVDTILGGGIMSQSITEVYGEYRTGKTQLAHTMSVVTQL 152
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKG-MAQEMAGRILVLQPTSLS 187
P GG G V YID E TF R+ S + F G MA E IL + +
Sbjct: 153 PPDMGGAAGKVAYIDTEGTFRPDRI-----RSIAQRFGVNGDMALE---NILYARAFNSE 204
Query: 188 EFTESLEKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAE 243
E + + + +++ +LL++DS+ A + R + Q L+ +S ++ L+E
Sbjct: 205 HQMELINECSIRFAEDKDFRLLIVDSIMACFRTDYSGRGELSERQQKLAQMLSKLSKLSE 264
Query: 244 FSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH-WAHAVTIR 302
I I++TNQV+ D + F + +G H +HA R
Sbjct: 265 EYNIAILLTNQVQS---DPGAVMTF--------------VAGGALKPIGGHILSHASATR 307
Query: 303 LVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSG 335
+ L + ++ +R + SP P S+ ++ G
Sbjct: 308 MFLRKGRAEERVAKLVDSPDRPESEASYKLDEGG 341
>gi|70995295|ref|XP_752407.1| DNA repair protein RAD51 [Aspergillus fumigatus Af293]
gi|66850042|gb|EAL90369.1| DNA repair protein RAD51, putative [Aspergillus fumigatus Af293]
gi|159131162|gb|EDP56275.1| DNA repair protein RAD51, putative [Aspergillus fumigatus A1163]
Length = 348
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 109/260 (41%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 103 ITTGSKQLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 162
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 163 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 214
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LLV+DS +L R + Q L+ + + LA+ I +V+TNQV Q
Sbjct: 215 TRFSLLVVDSATSLYRTDFNGRGELSSRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQV 274
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 275 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRVCKIY 318
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 319 DSPCLPESDCLFAINEDGIG 338
>gi|67521554|ref|XP_658841.1| hypothetical protein AN1237.2 [Aspergillus nidulans FGSC A4]
gi|9904315|gb|AAB39323.2| ARECA [Emericella nidulans]
gi|40746674|gb|EAA65830.1| hypothetical protein AN1237.2 [Aspergillus nidulans FGSC A4]
Length = 344
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 109/260 (41%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 99 ITTGSKQLDTLLGGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYID 158
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G+ +E+ + + + + L + + +
Sbjct: 159 TEGTFRPVRLL--------AVAQRYGLVGEEVLDNVAYARAYNSDHQLQLLNQASQMMCE 210
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LLV+DS +L R + Q L+ + + LA+ I +V+TNQV Q
Sbjct: 211 TRFSLLVVDSATSLYRTDFNGRGELSTRQTHLAKFMRTLQRLADEFGIAVVITNQVVAQV 270
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 271 DGGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRVCKIY 314
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F IN GI
Sbjct: 315 DSPCLPESDCLFAINEDGIG 334
>gi|209944604|gb|ACI96533.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 18/158 (11%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F + + Q A+ + L G+ K LD GG+ G + EL+G +GTGKTQ CL+L
Sbjct: 31 FDKSCWDISQSASNKILTGN-----KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLC 85
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG-------ASSFPEIFHSKGMAQEMAG 176
L +P GGL+G ++ID F R++++ A PE A +M
Sbjct: 86 LNVQIPKAAGGLEGSALFIDTRQDFHPDRLMDLALKLERQYAHRVPEF-----KAHKMLQ 140
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM 213
+I ++ L + ++ L+ + +KL+VIDS+
Sbjct: 141 KIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSL 178
>gi|395646317|ref|ZP_10434177.1| DNA repair and recombination protein radA [Methanofollis liminatans
DSM 4140]
gi|395443057|gb|EJG07814.1| DNA repair and recombination protein radA [Methanofollis liminatans
DSM 4140]
Length = 326
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 121/290 (41%), Gaps = 50/290 (17%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T + ++E R + L +P DA L GG+ +TE+ G G+GK+Q +++
Sbjct: 68 FKTGIAVLEDRKEVKKLQTLVPE----FDALLGGGMETKSITEVYGEFGSGKSQISHQMA 123
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA------------SSFPEIFH-SKGM 170
+ +P GGL+G +YID E+TF R+ +M + F E H +KG
Sbjct: 124 VNCQIPLELGGLNGSCVYIDTENTFRPERIEQMVEGLDIPGYEVPPFTEFLERIHVAKGY 183
Query: 171 AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---G 227
+ +L +E ES + V+L+++DS+ A + R
Sbjct: 184 TSDHQMLLLESARDLATEMKES---------DHPVRLIIVDSLTAHFRAEYAGRGTLSVR 234
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHI 287
Q L+ H+ + +AE +VTNQV+ D T+
Sbjct: 235 QQKLNRHMYDLAKIAEEFNAVALVTNQVQSNP--------------GVFFGDPTK----- 275
Query: 288 VAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ G HA RL L ++K G+R + SP P +F + SG+
Sbjct: 276 -PIGGNIVGHAAKFRLYLRKSKGGRRIAKLVDSPNLPDGEAAFVVETSGL 324
>gi|209944574|gb|ACI96518.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 18/158 (11%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F + + Q A+ + L G+ K LD GG+ G + EL+G +GTGKTQ CL+L
Sbjct: 31 FDKSCWDISQSASNKILTGN-----KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLC 85
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG-------ASSFPEIFHSKGMAQEMAG 176
L +P GGL+G ++ID F R++++ A PE A +M
Sbjct: 86 LNVQIPKAAGGLEGSALFIDTRQDFHPDRLMDLALKLERQYAHRVPEF-----KAHKMLQ 140
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM 213
+I ++ L + ++ L+ + +KL+VIDS+
Sbjct: 141 KIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSL 178
>gi|448648823|ref|ZP_21679888.1| DNA repair and recombination protein RadA [Haloarcula californiae
ATCC 33799]
gi|445774567|gb|EMA25583.1| DNA repair and recombination protein RadA [Haloarcula californiae
ATCC 33799]
Length = 349
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 100/232 (43%), Gaps = 54/232 (23%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L + +D L GGV +TE+ G G GK+Q +L+
Sbjct: 67 FETGSTVLERREQI----GKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLA 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL-- 181
+ LPA +GGL+G I++D E TF R+ +M KG+A E+ +VL
Sbjct: 123 VNVQLPAEHGGLEGSAIFVDSEDTFRPERIEQM----------VKGLADEVLADTMVLHG 172
Query: 182 --------QPTS---LSEFTES-LEKIKVSLLQNQ-----------------------VK 206
PT L + S LEKI V+ N V+
Sbjct: 173 IVEEEADADPTDEALLDDLVASVLEKIHVAKAFNSNHQILLAEKAQEIASESQEEEFPVR 232
Query: 207 LLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
LL +DS+ A + R A Q L+ H+ + + + + +VVTNQV
Sbjct: 233 LLAVDSLTAHFRAEYVGRGELADRQQKLNKHLHDLMRVGDLNNTAVVVTNQV 284
>gi|55379507|ref|YP_137357.1| DNA repair and recombination protein RadA [Haloarcula marismortui
ATCC 43049]
gi|55232232|gb|AAV47651.1| DNA repair and recombination protein RadA [Haloarcula marismortui
ATCC 43049]
Length = 351
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 100/232 (43%), Gaps = 54/232 (23%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L + +D L GGV +TE+ G G GK+Q +L+
Sbjct: 69 FETGSTVLERREQI----GKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLA 124
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL-- 181
+ LPA +GGL+G I++D E TF R+ +M KG+A E+ +VL
Sbjct: 125 VNVQLPAEHGGLEGSAIFVDSEDTFRPERIEQM----------VKGLADEVLADTMVLHG 174
Query: 182 --------QPTS---LSEFTES-LEKIKVSLLQNQ-----------------------VK 206
PT L + S LEKI V+ N V+
Sbjct: 175 IVEEEADADPTDEALLDDLVASVLEKIHVAKAFNSNHQILLAEKAQEIASESQEEEFPVR 234
Query: 207 LLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
LL +DS+ A + R A Q L+ H+ + + + + +VVTNQV
Sbjct: 235 LLAVDSLTAHFRAEYVGRGELADRQQKLNKHLHDLMRVGDLNNTAVVVTNQV 286
>gi|407926554|gb|EKG19521.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 326
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 129/292 (44%), Gaps = 36/292 (12%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA +++V F TA + ++R +E + + T K LD L GG+ G +TE+ G
Sbjct: 54 LAEAAKLVPMGFTTATEMHQRR--SELI--SITTGSKQLDTLLAGGIETGSITEIFGEFR 109
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + + G++
Sbjct: 110 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLL--------AVANRYGLSG 161
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV----PGVHEQRAPG 227
+E+ + + + + L++ + + + LL++DS +L G E A
Sbjct: 162 EEVLDNVAYARAYNSDHQLQLLQQASQMMTETRFSLLIVDSATSLYRTDFAGRGELSARQ 221
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSH 286
H L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 222 VH-LAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK-------------- 266
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L+ G+ R + SP P F IN GI
Sbjct: 267 --PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCMFAINEDGIG 316
>gi|294656166|ref|XP_458414.2| DEHA2C16698p [Debaryomyces hansenii CBS767]
gi|199430910|emb|CAG86496.2| DEHA2C16698p [Debaryomyces hansenii CBS767]
Length = 350
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 41/264 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 107 ITTGSKQLDTLLGGGIETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLYID 166
Query: 144 VESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI 196
E TF R++ + + +++ E ++L +SE
Sbjct: 167 TEGTFRPVRLVSIAQRYGLNPEDCLDNVAYARAYNAEHQFQLLNHAAQMMSE-------- 218
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTN 253
++ L++DS+ +L + RA Q ++ ++ + LA+ I +V+TN
Sbjct: 219 ------SRFSCLIVDSIMSLYRTDYSGRAELSARQTHVAKYMRTLQRLADEFGIAVVITN 272
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQR 312
QV Q S ++ +K + G AH+ T RL + ++ QR
Sbjct: 273 QVVAQVDGASAMFNPDPKK----------------PIGGNIIAHSSTTRLSFKKGRAEQR 316
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
+ SP P F I GI
Sbjct: 317 ICKIYDSPCLPESECVFAIYEDGI 340
>gi|324516267|gb|ADY46476.1| Meiotic recombination protein DMC1/LIM15 [Ascaris suum]
Length = 348
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 37/322 (11%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGH 83
I T K + T L + + ++V + +++ F TAL ++E+R +
Sbjct: 52 ICTIKGIMMTTRKRLCDVKGLSEAKVDKIKEIAAKLTKNGFITALEVVERR----KMCFR 107
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGG-VIYI 142
+ T + LD L GG+ +TE+ G TGKTQ L +P GG VI+I
Sbjct: 108 ISTGSRELDKLLGGGIESQAITEVFGEFRTGKTQLSHTLCATCQMPNAATSFKGGKVIFI 167
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQE-MAGRILVLQPTSLSEFTESLEKIKVSLL 201
D E+TF R+ +I M QE M +L + + E L+ +
Sbjct: 168 DTENTFRPDRL--------RQICDRFNMDQEAMLDNVLYARAYTSDHQVELLDYVAAKFH 219
Query: 202 Q--NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256
+ KLL++DS+ AL + R A Q L+ +S + +AE I + +TNQ+
Sbjct: 220 EELGVFKLLIVDSVMALFRVDYSGRGELAERQQKLAQMMSRLQKIAEEYNIAVFITNQM- 278
Query: 257 PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMN 315
+ D FQ I HI+ AHA T R++L+ G+ R
Sbjct: 279 --TADPGAGMTFQADPKKPI-------GGHIL-------AHASTTRIMLKKGRGETRIAK 322
Query: 316 VEKSPTSPPLAFSFTINPSGIS 337
+ SP P +F I G++
Sbjct: 323 IYDSPDMPENEATFAITEGGVA 344
>gi|440639447|gb|ELR09366.1| DNA repair protein rhp51 [Geomyces destructans 20631-21]
Length = 349
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 125/291 (42%), Gaps = 34/291 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
L S++V F TA + ++R +E + + T K LD L GG+ G VTE+ G
Sbjct: 77 LTEASKLVPMGFTTATEMHQRR--SELI--SITTGSKQLDTLLAGGIETGSVTEIFGEFR 132
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + + G++
Sbjct: 133 TGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLL--------AVANRYGLSG 184
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQ 228
+E+ + + + + L+ + + + LL++DS +L R A Q
Sbjct: 185 EEVLDNVAYARAYNSDHQLQLLQLASQMMCETRFSLLIVDSATSLYRTDFVGRGELASRQ 244
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHI 287
L + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 245 THLGKFMRALQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK--------------- 289
Query: 288 VAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L+ G+ R + SP P F IN GI
Sbjct: 290 -PIGGHVIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAINEDGIG 339
>gi|383863171|ref|XP_003707056.1| PREDICTED: DNA repair protein XRCC3-like [Megachile rotundata]
Length = 257
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 116/272 (42%), Gaps = 28/272 (10%)
Query: 70 LMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALP 129
L E + L T LDA L GG+ +T++ G A TGKTQ L+L L LP
Sbjct: 7 LYETAKTVKERDKFLTTGCSKLDALLEGGITTRGITQIYGAASTGKTQLALQLCLTVQLP 66
Query: 130 AHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEF 189
GG G +YI ES F SRR+ E+ ++ +K + G ++ ++ S ++
Sbjct: 67 EVKGGFAAGAVYICTESIFPSRRLQEL----IQKLDATKKYG--INGDLVFVEHVSTTDE 120
Query: 190 TES--LEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSR- 246
E+ L +I + + ++ L++IDS+ A P S ++ L E S+
Sbjct: 121 LETCLLHRIPILMSAKKIGLIIIDSIAAPYRVEDWNSEFNNRPKSLR-TIGQQLHELSKH 179
Query: 247 -IPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL 305
I I+ NQV H+ +D + +R LG W+ +T +
Sbjct: 180 NICIICINQVTAVIHN---------NLLDDNVSER--------PALGTTWSSMITNSIYF 222
Query: 306 EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
+ R+ ++ S P + F I SG++
Sbjct: 223 YRINSLRYACIKLSSQLPQIIIPFKIEGSGVT 254
>gi|410720737|ref|ZP_11360090.1| DNA repair and recombination protein RadB [Methanobacterium sp.
Maddingley MBC34]
gi|410600448|gb|EKQ54976.1| DNA repair and recombination protein RadB [Methanobacterium sp.
Maddingley MBC34]
Length = 232
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G +PT +D+ + GGV G +T+ GP G+GKT L L + A + G I+
Sbjct: 12 GKIPTSSP-IDSLIGGGVEKGCITQFYGPPGSGKTNITLNLLIQNAKNGNSG------IF 64
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI-KVSL 200
+D E + R+ ++ + F E+A I+V +P++ +E +L +I K+
Sbjct: 65 VDTEGGLSIERVKQLAGADF----------NELASNIIVFEPSTFTEQDSTLRRIEKMVG 114
Query: 201 LQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+V+L+++DS AL + L + L+T LA I +V+TNQV
Sbjct: 115 SGEEVELVILDSAVALYRVRDGDSSQINLELGRQMGLLTRLARKHDIAVVITNQVYASFE 174
Query: 261 DESCLYP 267
E + P
Sbjct: 175 GEGMVEP 181
>gi|304314045|ref|YP_003849192.1| DNA repair and recombination protein RadB [Methanothermobacter
marburgensis str. Marburg]
gi|302587504|gb|ADL57879.1| predicted DNA repair and recombination protein RadB
[Methanothermobacter marburgensis str. Marburg]
Length = 234
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 40/259 (15%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G LPT +D+ L GGV G +T+ GP +GKT +KL++ + D ++
Sbjct: 11 GRLPTG-SSIDSILGGGVERGTITQFYGPPASGKTNIAIKLAVETSKR------DKKTVF 63
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
ID E + R+ ++ SSF + +A I+V +P+S +E E+++K +++L
Sbjct: 64 IDTEGGISVERIRQVSGSSF----------ERVADNIIVFEPSSFTEQGEAIQKT-LNVL 112
Query: 202 QNQ---VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+N V L+V+DS AL + L + L+ +A + +V+TNQ+
Sbjct: 113 KNHGDSVDLIVLDSAVALYRLKEGNGSNFNVDLGRQLFLLLQMARRFDLAVVITNQIYSL 172
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEK 318
D+ V+++ + RY+S + + L + + G+R + +
Sbjct: 173 RGDDG------VERVSPVGGTLLRYWSKTI------------VELEMGDRPGERVAILRR 214
Query: 319 SPTSPP-LAFSFTINPSGI 336
P L SF I P GI
Sbjct: 215 HRNRPEGLRASFRIVPEGI 233
>gi|431890845|gb|ELK01724.1| DNA repair protein RAD51 like protein 3 [Pteropus alecto]
Length = 308
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 16/133 (12%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHNQSFIITFCSALDNILGGGIPLTKTTEICGAPGVGKTQLCMQLAID 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKG--MAQEMAGRILVLQP 183
+P +GG++G ++ID E +F R++++ + + G M +E P
Sbjct: 133 VQIPECFGGVEGEAVFIDTEGSFMVDRVVDLATACIQHLHLIAGTHMGEE--------HP 184
Query: 184 TSLSEFTESLEKI 196
+L +FT LE I
Sbjct: 185 KALEDFT--LENI 195
>gi|366997935|ref|XP_003683704.1| hypothetical protein TPHA_0A01870 [Tetrapisispora phaffii CBS 4417]
gi|357521999|emb|CCE61270.1| hypothetical protein TPHA_0A01870 [Tetrapisispora phaffii CBS 4417]
Length = 332
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 127/329 (38%), Gaps = 45/329 (13%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGH 83
I T LS+T L KL + +V +I+ F A + + R L
Sbjct: 38 IYTVNTLLSVTRRNLCKLKGLSEIKVEKIKEAAGKIIQVGFIPATIQLNIRKKVYSL--- 94
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
T K LD L GG+ +TE+ G GKTQ L + LP GG +G V YID
Sbjct: 95 -STGSKQLDNILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTTQLPRELGGAEGKVAYID 153
Query: 144 VESTFTSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI 196
E TF R+ ++ S + +++ + E E +EK+
Sbjct: 154 TEGTFRPERIKQIAEKYGLDPESCLDNVSYARALNSEHQ--------------MELVEKL 199
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTN 253
L + KL+V+DS+ A + R Q L+ H+ + LAE + +TN
Sbjct: 200 GEELSTGEYKLIVVDSIMANFRVDYCGRGELNERQQKLNQHLFKLNRLAEEFNCAVFMTN 259
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QR 312
QV+ S +K V G AHA R++L G +R
Sbjct: 260 QVQSDPGASSLFASADGRK----------------PVGGHVLAHASATRILLRKGRGEER 303
Query: 313 FMNVEKSPTSPPLAFSFTINPSGISLLTD 341
++ SP P + I+ SGI+ T+
Sbjct: 304 VAKLQDSPDMPERECVYIISESGITDSTE 332
>gi|209946364|gb|ACI97413.1| spindle B [Drosophila melanogaster]
Length = 341
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 105/260 (40%), Gaps = 43/260 (16%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
LD GGV +TEL G AG GKTQ L+LSL LP GGL GV YI ES+F
Sbjct: 94 ALDRCTGGGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAYICTESSFP 153
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES-LEKIKVSLLQNQVKLL 208
+RR+++M + E H + M G I V + +I + Q+ + L+
Sbjct: 154 ARRLLQMSKAC--EKRHPE-MELNFLGNIFVENHIEAEPLLACVINRIPRLMQQHGIGLI 210
Query: 209 VIDSMEAL--VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+IDS+ + + + +RA L+ + S A+ +V NQV
Sbjct: 211 IIDSVXXIFRLYXXYLERARHMRRLA---DALLSYADKYNCAVVCVNQV----------- 256
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-----EAKSGQRFMNVEK--- 318
TR + LG WAH RL + + + G + + V K
Sbjct: 257 -------------ATRDGQDEIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEI 303
Query: 319 --SPTSPPLAFSFTINPSGI 336
SP +P I G+
Sbjct: 304 LYSPETPNDFAEXXITADGV 323
>gi|296487030|tpg|DAA29143.1| TPA: DMC1 dosage suppressor of mck1 homolog [Bos taurus]
Length = 340
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 128/303 (42%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGXIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H+ + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHNA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|429965461|gb|ELA47458.1| DNA repair protein RAD51 [Vavraia culicis 'floridensis']
Length = 343
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 104/260 (40%), Gaps = 45/260 (17%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGKTQ C L++ L GG G +YID E TF
Sbjct: 112 LDKLLKGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLDRESGGGSGKALYIDTEGTFRP 171
Query: 151 RRMIEMGASSF--------PEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
R I + A F I +++ + ++LV LSE
Sbjct: 172 ERCIAV-AQRFGLDPDQVLENISYARAYNSDHQSQLLVQAAAMLSE-------------- 216
Query: 203 NQVKLLVIDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+ L+++DS AL G E A H L+ + ++ LA+ + +V+TNQV
Sbjct: 217 SNYSLIIVDSAMALYRTDFSGRGELGARQIH-LARFLRMLLRLADEFSVAVVITNQVVAS 275
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
+ ++ +K V G AHA T RL L G+ R +
Sbjct: 276 VDGAAAMFNADPKK----------------PVGGHIMAHASTTRLYLRKGRGETRICKIY 319
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F I +G+
Sbjct: 320 DSPCLPESEAVFAITANGVD 339
>gi|260944444|ref|XP_002616520.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238850169|gb|EEQ39633.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 339
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 108/264 (40%), Gaps = 41/264 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GGV G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 96 LTTGSKQLDTLLGGGVETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLYID 155
Query: 144 VESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI 196
E TF R++ + + +++ E ++L +SE
Sbjct: 156 TEGTFRPVRLVSIAQRYGLNPDDCLDNVAYARAYNAEHQFQLLHQAAQMMSE-------- 207
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTN 253
++ LL++DS+ +L + R + Q ++ + + LA+ I +V+TN
Sbjct: 208 ------SRFSLLIVDSIMSLYRTDYSGRGELSARQTHVAKFMRTLQRLADEFGIAVVITN 261
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QR 312
QV Q + ++ +K + G AH+ T RL + G QR
Sbjct: 262 QVVAQVDGSAAMFNPDPKK----------------PIGGNIIAHSSTTRLSFKKGRGEQR 305
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
+ SP P F I GI
Sbjct: 306 ICKIYDSPCLPESECVFAIYEDGI 329
>gi|301757528|ref|XP_002914594.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Ailuropoda melanoleuca]
Length = 340
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 128/303 (42%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H+ + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHNA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|300797730|ref|NP_001178267.1| meiotic recombination protein DMC1/LIM15 homolog [Bos taurus]
gi|426225780|ref|XP_004007040.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Ovis
aries]
Length = 340
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 128/303 (42%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H+ + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHNA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|254572065|ref|XP_002493142.1| Strand exchange protein, forms a helical filament with DNA that
searches for homology [Komagataella pastoris GS115]
gi|238032940|emb|CAY70963.1| Strand exchange protein, forms a helical filament with DNA that
searches for homology [Komagataella pastoris GS115]
gi|328352840|emb|CCA39238.1| DNA repair protein rhp51 [Komagataella pastoris CBS 7435]
Length = 362
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 112/259 (43%), Gaps = 32/259 (12%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 122 ITTGSKKLDTLLGGGIETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLYID 181
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ I G+ ++ + + + + L + + +
Sbjct: 182 TEGTFRPIRLV--------SIAKRYGLNEDDTLDNVAYARAYNADHQLQLLNQAAAMMSE 233
Query: 203 NQVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
++ LL++DS+ AL G E A H ++ ++ + LA+ I +++TNQV Q
Sbjct: 234 SRFSLLIVDSIMALYRTDFSGRGELSARQMH-VAKYMRTLQRLADEFGIAVLITNQVVAQ 292
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVE 317
D S ++ +K + G AH+ T RL + K+ QR +
Sbjct: 293 V-DASAVFNPDPKK----------------PIGGNIVAHSSTTRLSFKKGKAEQRICKIY 335
Query: 318 KSPTSPPLAFSFTINPSGI 336
SP P F I GI
Sbjct: 336 DSPCLPESECVFAIYEDGI 354
>gi|21312694|ref|NP_083151.1| DNA repair protein XRCC3 [Mus musculus]
gi|20140780|sp|Q9CXE6.1|XRCC3_MOUSE RecName: Full=DNA repair protein XRCC3; AltName: Full=X-ray repair
cross-complementing protein 3
gi|12852383|dbj|BAB29391.1| unnamed protein product [Mus musculus]
Length = 349
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
+AL L +Q+ + L LD L GG+P +T L G + GKTQ L+L L
Sbjct: 64 SALHLFQQKESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLA 123
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRIL 179
P YGGL+ G +YI E F S+R+ ++ A + PE K + I
Sbjct: 124 VQFPRQYGGLEAGAVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEK---IRFSNHIF 180
Query: 180 VLQPTSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEA-LVPGVHEQRAPGQHPLSWHISL 237
+ + E + +K+ + L + +L+V+DS+ A H Q + + L +SL
Sbjct: 181 IEHAADVDTLLECVSKKVPILLSRGMARLVVVDSIAAPFRCEFHLQASAIRAKLL--LSL 238
Query: 238 ITSLAEFS---RIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
+L S R P++ NQV D+ Q + R L S LG
Sbjct: 239 GATLRRLSSTFRSPVLCINQVTDMVEDQ--------QSVSRSLGASEERLS---PALGIT 287
Query: 295 WAHAVTIRLVLEA-----------KSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
WA+ + +RL+++ +S R + V +P P + +T++ GI
Sbjct: 288 WANQLLMRLMVDRTHEDDVTTGLPRSPVRTLRVLFAPHLPLSSCCYTVSGEGI 340
>gi|148686665|gb|EDL18612.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Mus musculus]
Length = 349
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
+AL L +Q+ + L LD L GG+P +T L G + GKTQ L+L L
Sbjct: 64 SALHLFQQKESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLA 123
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRIL 179
P YGGL+ G +YI E F S+R+ ++ A + PE K + I
Sbjct: 124 VQFPRQYGGLEAGAVYICTEDAFPSKRLWQLIAQQPRLRTDAPEELIEK---IRFSNHIF 180
Query: 180 VLQPTSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEA-LVPGVHEQRAPGQHPLSWHISL 237
+ + E + +K+ + L + +L+V+DS+ A H Q + + L +SL
Sbjct: 181 IEHAADVDTLLECVSKKVPILLSRGMARLVVVDSIAAPFRCEFHLQASAIRAKLL--LSL 238
Query: 238 ITSLAEFS---RIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
+L S R P++ NQV D+ Q + R L S LG
Sbjct: 239 GATLRRLSSTFRSPVLCINQVTDMVEDQ--------QSVSRSLGASEERLS---PALGIT 287
Query: 295 WAHAVTIRLVLE-----------AKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
WA+ + +RL+++ +S R + V +P P + +T++ GI
Sbjct: 288 WANQLLMRLMVDRTHEDDVTTGLPRSPVRTLRVLFAPHLPLSSCCYTVSGEGI 340
>gi|344296228|ref|XP_003419811.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Loxodonta africana]
Length = 340
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYQGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|281201100|gb|EFA75314.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
PN500]
Length = 993
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 16/181 (8%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ +TE+VG +G GKTQ ++L + A LP GG++GG +YI ES F
Sbjct: 612 LDRHLQGGIMPSGITEIVGESGCGKTQLAIQLCIQAQLPFSLGGMEGGAVYIVTESNFPH 671
Query: 151 RRMIEMGASSFPEI-----------FHSKGMAQEMAGRILVLQ-PTSLSEFTESLEKIKV 198
+R+ +M P I S + + I++ + PT+ T ++
Sbjct: 672 KRLSQMIGKRRPIIEKLLQRNSENNNSSNSLNIQFEDNIIIHKVPTAQQLLTVLTQQFAE 731
Query: 199 SLLQNQVKLLVIDSMEALVP---GVHEQRAPGQHPLSWHIS-LITSLAEFSRIPIVVTNQ 254
+ + ++LLV+DS+ ALV G + + L W IS + ++E I +VV NQ
Sbjct: 732 LIFKRTIRLLVVDSIAALVRSEFGTESKDLIERTNLLWEISNQLKLISEEHGITVVVINQ 791
Query: 255 V 255
V
Sbjct: 792 V 792
>gi|209944588|gb|ACI96525.1| spindle D [Drosophila melanogaster]
gi|209944592|gb|ACI96527.1| spindle D [Drosophila melanogaster]
gi|209944598|gb|ACI96530.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++++ A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMDLALKLERQYAHRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 DHPDIKLIVIDSL 178
>gi|50556100|ref|XP_505458.1| YALI0F15477p [Yarrowia lipolytica]
gi|49651328|emb|CAG78267.1| YALI0F15477p [Yarrowia lipolytica CLIB122]
Length = 329
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 109/257 (42%), Gaps = 31/257 (12%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID E TF
Sbjct: 98 LDTLLGGGIETGAITEMFGEFRTGKSQLCHTLAVTCQLPIDQGGGEGKCLYIDTEGTFRP 157
Query: 151 RRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
R+ +I G+ E+ + + + + L+ + +++ L+
Sbjct: 158 ERL--------HQIARRYGLNGDEVLDNVAYARAHNSDHQMQLLQMAANMMTKSRFSCLI 209
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS+ AL + R + Q ++ + + LA+ I +V+TNQV Q D +
Sbjct: 210 VDSIMALYRTDYAGRGELSARQTHVAKFMRTLQRLADEFGIAVVITNQVVAQV-DGAVFN 268
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPL 325
P + + +IV AHA T RL + G QR + SP P
Sbjct: 269 PDPKKPIG----------GNIV-------AHASTTRLYFKKGRGVQRICKIYDSPCLPES 311
Query: 326 AFSFTINPSGISLLTDD 342
F I+ GI D+
Sbjct: 312 GCVFAIHEDGIGDPKDE 328
>gi|37931470|gb|AAP13463.1| Rad51p [Kluyveromyces lactis]
Length = 369
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 129/307 (42%), Gaps = 36/307 (11%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+LM++ + ++ LA S +V F TA +R E + L T K LD L
Sbjct: 86 DLMEIKGISEAKADKLLAEASRLVPMGFVTAADFHLRR--NEMI--CLTTGSKNLDTLLG 141
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G TGK+Q C L++ +P GG +G +YID E TF R++ +
Sbjct: 142 GGIETGSITELFGEFRTGKSQLCHTLAVTCQIPLDMGGGEGKCLYIDTEGTFRPIRLVSI 201
Query: 157 GASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEA 215
A F G+ + A + + + + L+ + +++ L+++DS+ A
Sbjct: 202 -AQRF-------GLDPDDALNNVAYARAYNADHQLKLLDAAAQMMSESRFSLIIVDSIMA 253
Query: 216 L----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQ 271
L G E A H L+ + + LA+ + VVTNQV Q P
Sbjct: 254 LYRTDFSGRGELSARQMH-LAKFMRSLQRLADQFGVAAVVTNQVVAQVDGGMMFNP---- 308
Query: 272 KMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFT 330
D + + G AH+ T RL + G QR+ V SP P F
Sbjct: 309 -------DPKKPFG------GNIMAHSSTTRLGFKKGKGPQRYCKVVDSPCLPEAECVFA 355
Query: 331 INPSGIS 337
I GI
Sbjct: 356 IYEDGIG 362
>gi|448683172|ref|ZP_21692146.1| DNA repair and recombination protein RadA [Haloarcula japonica DSM
6131]
gi|445784157|gb|EMA34975.1| DNA repair and recombination protein RadA [Haloarcula japonica DSM
6131]
Length = 349
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 99/232 (42%), Gaps = 54/232 (23%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L + +D L GGV +TE+ G G GK+Q +LS
Sbjct: 67 FETGSTVLERREQI----GKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLS 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL-- 181
+ LPA +GGL+G I++D E TF R+ +M KG+ E+ +VL
Sbjct: 123 VNVQLPAEHGGLEGSAIFVDSEDTFRPERIEQM----------VKGLTDEVLADTMVLHG 172
Query: 182 --------QPTS---LSEFTES-LEKIKVSLLQNQ-----------------------VK 206
PT L + S LEKI V+ N V+
Sbjct: 173 IVEEEADADPTDEDLLDDLVASVLEKIHVAKAFNSNHQILLAEKAQEIASESQEEEFPVR 232
Query: 207 LLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
LL +DS+ A + R A Q L+ H+ + + + + +VVTNQV
Sbjct: 233 LLAVDSLTAHFRAEYVGRGELADRQQKLNKHLHDLMRVGDLNNTAVVVTNQV 284
>gi|296202369|ref|XP_002748430.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Callithrix
jacchus]
Length = 304
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH+ G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 154 TALELLEQ----EHIQGSIITFCSALDNILGGGVPLMKTTEICGAPGIGKTQLCVQLAVD 209
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159
+P +GG+ G ++ID E +F R++++ +
Sbjct: 210 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATA 243
>gi|440903014|gb|ELR53728.1| Meiotic recombination protein DMC1/LIM15-like protein, partial [Bos
grunniens mutus]
Length = 345
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 128/303 (42%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 70 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 122
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 123 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDI-ADR 181
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H+ + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 182 F-NVDHNA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 235
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 236 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 292
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 293 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 338
Query: 335 GIS 337
GI
Sbjct: 339 GIG 341
>gi|6753650|ref|NP_034189.1| meiotic recombination protein DMC1/LIM15 homolog [Mus musculus]
gi|2500100|sp|Q61880.1|DMC1_MOUSE RecName: Full=Meiotic recombination protein DMC1/LIM15 homolog
gi|961476|dbj|BAA09590.1| MmLim15 protein [Mus musculus]
gi|1321647|dbj|BAA10969.1| DMC1 homologue [Mus musculus]
gi|109732931|gb|AAI16768.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Mus musculus]
gi|111601086|gb|AAI19082.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Mus musculus]
gi|148672696|gb|EDL04643.1| disrupted meiotic cDNA 1 homolog, isoform CRA_a [Mus musculus]
Length = 340
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 120/287 (41%), Gaps = 34/287 (11%)
Query: 57 SEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKT 116
++++ P F TA E+R + H+ T + D L GG+ +TE G TGKT
Sbjct: 78 NKLIEPGFLTAFQYSERR----KMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKT 133
Query: 117 QFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAG 176
Q L + A LP G G +I+ID E+TF R+ ++ A F + H + +
Sbjct: 134 QLSHTLCVTAQLPGTGGYSGGKIIFIDTENTFRPDRLRDI-ADRF-NVDH-----EAVLD 186
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L + + E L+ + + KLL+IDS+ AL R A Q L
Sbjct: 187 NVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKL 246
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
+ +S + ++E + + VTNQ+ + D FQ I HI+
Sbjct: 247 AQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKPI-------GGHIL--- 293
Query: 292 GFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
AHA T R+ L G+ R + SP P +F I GI
Sbjct: 294 ----AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIG 336
>gi|448679793|ref|ZP_21690338.1| DNA repair and recombination protein RadA [Haloarcula argentinensis
DSM 12282]
gi|445769952|gb|EMA21021.1| DNA repair and recombination protein RadA [Haloarcula argentinensis
DSM 12282]
Length = 351
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 99/232 (42%), Gaps = 54/232 (23%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L + +D L GGV +TE+ G G GK+Q +LS
Sbjct: 69 FETGSTVLERREQI----GKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLS 124
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL-- 181
+ LPA +GGL+G I++D E TF R+ +M KG+ E+ +VL
Sbjct: 125 VNVQLPAEHGGLEGSAIFVDSEDTFRPERIEQM----------VKGLDDEVLADTMVLHG 174
Query: 182 --------QPTS---LSEFTES-LEKIKVSLLQNQ-----------------------VK 206
PT L + S LEKI V+ N V+
Sbjct: 175 IVEEEADADPTDEDLLDDLVASVLEKIHVAKAFNSNHQILLAEKAQEIASESQEEEFPVR 234
Query: 207 LLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
LL +DS+ A + R A Q L+ H+ + + + + +VVTNQV
Sbjct: 235 LLAVDSLTAHFRAEYVGRGELADRQQKLNKHLHDLMRVGDLNNTAVVVTNQV 286
>gi|90969177|gb|ABE02576.1| RAD51D splice variant g [Arabidopsis thaliana]
gi|90969191|gb|ABE02664.1| RAD51D splice variant g [Arabidopsis thaliana]
Length = 266
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 24/212 (11%)
Query: 17 NIFAARNITTAKDAL--SLTELELMKLLDVELSEVRSALALVSEIV---CPPFQTALLLM 71
+ A+ I T +D L L EL ++ + L+ ++ C P L L+
Sbjct: 20 DFCASHGILTIEDFLLHDLYELTAFSQRQTNADRLKEGITLILSLIERQCRPLVNGLKLL 79
Query: 72 EQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAH 131
E +H L T K D+ L GG G +TELVGP+ +GKTQFC++ AA
Sbjct: 80 EDLHRNKHT---LSTGDKETDSLLQGGFREGQLTELVGPSSSGKTQFCMQ----AAASVA 132
Query: 132 YGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTE 191
L G V+Y+D ++F++RR+ + SS + Q++ RIL + +
Sbjct: 133 ENHL-GRVLYLDTGNSFSARRIAQFICSS-----SDATLGQKVMSRILCHTVYDIYTLFD 186
Query: 192 SLEKIKVSLL------QNQVKLLVIDSMEALV 217
+L+ ++++L +++++LLV+DS+ +L+
Sbjct: 187 TLQDLEITLRLQMNVNESRLRLLVVDSISSLI 218
>gi|448597787|ref|ZP_21654712.1| DNA repair and recombination protein RadA [Haloferax alexandrinus
JCM 10717]
gi|445739248|gb|ELZ90757.1| DNA repair and recombination protein RadA [Haloferax alexandrinus
JCM 10717]
Length = 343
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 33/225 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T +++E+R G L ++ +D L GG+ +TE+ G G GK+Q +L+
Sbjct: 66 FETGSMVLERRQQI----GKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGL GG I+ID E TF R+ +M E+ + +EM G I +
Sbjct: 122 VNVQLPPEQGGLGGGCIFIDSEDTFRPERIDDMVRGLEDEVLEATLEDREMEGSI-DDEE 180
Query: 184 TSLSEFTESLEKIKVSLLQNQ-----------------------VKLLVIDSMEALVPGV 220
T + + L+KI V+ N V+LL +DS+ A
Sbjct: 181 TMQALVDDFLDKIHVAKAFNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAE 240
Query: 221 HEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSH 260
+ R A Q L+ H+ + + + I+VTNQV P S+
Sbjct: 241 YVGRGELAERQQKLNKHLHDLMRIGDLFNTGILVTNQVASNPDSY 285
>gi|386875952|ref|ZP_10118100.1| Rad51 [Candidatus Nitrosopumilus salaria BD31]
gi|386806242|gb|EIJ65713.1| Rad51 [Candidatus Nitrosopumilus salaria BD31]
Length = 219
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 58/267 (21%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T L+ LD L GG+P GV+ ++ G GTGKTQ L+LS+ + G V+Y+D
Sbjct: 2 ISTGLQKLDEFLGGGIPAGVIVDIFGGNGTGKTQLLLQLSINSINDG------GSVLYLD 55
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
F R++E+ S + ++ +I V + T+ SE +S++ +L +N
Sbjct: 56 TTGGFRPERILEIQNKS--------NLDFDILEKITVSRITNTSEQIKSIK----TLQKN 103
Query: 204 QVKLLVIDSMEALVP---GVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
L++ID++ L E S ++ +++ A ++IPI+VTN +R
Sbjct: 104 VFSLIIIDNVTDLFSYEYKTDESIFEKNTLFSRYMHELSNFAITNKIPIIVTNMIRNIDG 163
Query: 261 DE-----SCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMN 315
E S + PF K+ + K+ +++ + +WA +N
Sbjct: 164 KEVENMKSAIDPFTHVKI-HLSKNSSKFQGEV------YWA-----------------LN 199
Query: 316 VEKSPTSPPLAFSFTINPSGISLLTDD 342
E +FS+TI+ GIS T+D
Sbjct: 200 KE--------SFSYTIDKFGISEHTED 218
>gi|328871813|gb|EGG20183.1| putative DNA repair protein [Dictyostelium fasciculatum]
Length = 328
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 112/276 (40%), Gaps = 40/276 (14%)
Query: 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145
T + LD L GG+P +TE G G GKTQ +L++ +P G++G I+ID E
Sbjct: 36 TFCRELDNMLGGGIPLQRITEFCGAPGVGKTQLAFQLAVNCCIPKILYGVEGKCIFIDTE 95
Query: 146 STFTSRRMIEMGASSFP--EIFHSKGMAQE--MAGRILV---LQPTSLSEFTESLEKIKV 198
F R+ +M S +I G QE A +I V L+ + +E++
Sbjct: 96 GGFYVDRVKQMADSLIEHLQIMGQTGTDQEKDAANQITVDSILENIMYYKIHHYIEQVAF 155
Query: 199 S-----LLQN--QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVV 251
+L+N +KL++IDS+ + LS + S+AE + +V+
Sbjct: 156 IHHLPLVLENDRNIKLIIIDSIAYPFRRHFSDMGARKRILSSMTQNLLSIAEQYNVAVVI 215
Query: 252 TNQVRPQ--SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS 309
NQV + +++S L P F+ + R+ L K
Sbjct: 216 MNQVTTKILPNNQSMLVP------------------------CFNLGNYCANRVFLYWKD 251
Query: 310 GQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTE 345
QR ++ KS P F IN G+ DG E
Sbjct: 252 QQRHCHIYKSSLIQPSDAPFDINQDGVRGFIPDGEE 287
>gi|308806876|ref|XP_003080749.1| DNA repair protein RAD51/RHP55 (ISS) [Ostreococcus tauri]
gi|116059210|emb|CAL54917.1| DNA repair protein RAD51/RHP55 (ISS) [Ostreococcus tauri]
Length = 420
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 113/261 (43%), Gaps = 40/261 (15%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
+D L GG+ G VTE+ G TGKTQ L++ LP GG +G +YID E TF
Sbjct: 190 VDEMLQGGIESGSVTEIYGEFRTGKTQLMHTLAVTCQLPIEQGGGEGKCLYIDTEGTFRP 249
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVS----LLQNQVK 206
+R+I++ A F Q G +L + + TE ++ V+ + + +
Sbjct: 250 QRLIQI-AERF----------QMDPGPVLDNVAYAKAHNTEHQTELLVAAAGMMAETRFA 298
Query: 207 LLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHD 261
L++IDS+ L +E R + Q L + + LA+ + ++V+NQV P+
Sbjct: 299 LMIIDSVTNLYRTEYEGRGELSARQMHLGKFLRQLARLADEFGVAVIVSNQVVANPEGG- 357
Query: 262 ESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSP 320
PF + + + G AHA T RL L G+ R M + SP
Sbjct: 358 -----PFA-------------GANALKPIGGNIMAHASTTRLALRKGRGENRVMKIVCSP 399
Query: 321 TSPPLAFSFTINPSGISLLTD 341
P F+I GI+ D
Sbjct: 400 MLPESEAQFSIGEDGINDAQD 420
>gi|410965553|ref|XP_003989311.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Felis
catus]
Length = 340
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|348686364|gb|EGZ26179.1| hypothetical protein PHYSODRAFT_327096 [Phytophthora sojae]
Length = 359
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 122/245 (49%), Gaps = 16/245 (6%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M ++++ + + +F A ITT + L ++ +D+ + E +A +S +
Sbjct: 1 MLQRVLARENVDERRRALFQASGITTHRQLLQRPVWDVAHAVDMSVRETEELVAKLSIRL 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P ++A L + A + L T L G+D AL GG+ ++E VG +G GK+Q +
Sbjct: 61 APASRSAFDLFLESA---NHPTFLRTGLAGIDQALNGGLHCRALSEFVGTSGIGKSQVAM 117
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS--SFPEIFHSKGMAQEMAG-- 176
L+++ A+ + GV++ DVE F+++R++++ + S + Q AG
Sbjct: 118 TLAVICAMDYP----ESGVMFFDVEHNFSAKRLLQITLARISLTSTGQEANLNQLAAGII 173
Query: 177 -RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI 235
RI V++ S++ L++++ S+ +VKLL+ID + L + +R H L +
Sbjct: 174 KRIRVVKVKSIAVLASKLKEMEDSMHSFRVKLLIIDCVTTLFNKLIMER----HSLYRAV 229
Query: 236 SLITS 240
++I S
Sbjct: 230 TIIKS 234
>gi|281211390|gb|EFA85555.1| putative DNA repair protein [Polysphondylium pallidum PN500]
Length = 398
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 129/306 (42%), Gaps = 62/306 (20%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
++T L L+ + + H+ + LD L GG+P +TE G G GKTQ L+L+
Sbjct: 20 YKTGLDLLNEHSQ------HIISFCMELDQKLGGGIPLRKMTEFCGVPGVGKTQMSLQLA 73
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQE---------- 173
+ LP +GG+ G IYID E +F+ R+ +M A + E H + ++++
Sbjct: 74 VNCCLPVEFGGVAGKTIYIDTEGSFSVTRLRQM-ALALCE--HLELISKDNSNNNNNNET 130
Query: 174 -------MAGRILVLQPTSLSEFTESLEKIKV--------------SLLQ--NQVKLLVI 210
GR +L+ + + ES+ +V S+LQ + V+L+VI
Sbjct: 131 TGGGDGVGDGRRKILESFTANHILESIYYYRVHHYLEQLALVNMLPSILQARSDVRLIVI 190
Query: 211 DSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQV 270
DS+ + A L+ + + S+A+ + +V+TN V + +++
Sbjct: 191 DSITCPFRRHFQDIAQRTRVLTQLATNLLSIAQQYNVAVVLTNHVSTKLNNKG------- 243
Query: 271 QKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFT 330
S ++ G H T R+ L K +RF + KS L F
Sbjct: 244 -------------QSQLMPSFGDALGHICTNRIFLYYKQNKRFCYLYKSLPFQGLESQFN 290
Query: 331 INPSGI 336
I+ GI
Sbjct: 291 IDEHGI 296
>gi|342879606|gb|EGU80851.1| hypothetical protein FOXB_08718 [Fusarium oxysporum Fo5176]
Length = 348
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 126/291 (43%), Gaps = 34/291 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
L S++V F TA + ++R +E + + T K LD L GG+ G VTEL G
Sbjct: 76 LGEASKLVPMGFTTATEMHQRR--SELI--SITTGSKNLDTLLAGGIETGSVTELFGEFR 131
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + A+ F G++
Sbjct: 132 TGKSQICHTLAVTCQLPFDMGGGEGKCMYIDTEGTFRPVRLLGV-ANRF-------GLSG 183
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQ 228
+E+ + + + + L + + + + LL++DS +L R Q
Sbjct: 184 EEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFCGRGELSNRQ 243
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHI 287
L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 244 THLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK--------------- 288
Query: 288 VAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T R+ L+ G+ R + SP P F I GI
Sbjct: 289 -PIGGNIIAHASTTRISLKKGRGETRIAKIYDSPCLPESDTLFAIGEEGIG 338
>gi|212542819|ref|XP_002151564.1| DNA repair protein RAD51, putative [Talaromyces marneffei ATCC
18224]
gi|111380646|gb|ABH09700.1| RAD51-like protein [Talaromyces marneffei]
gi|210066471|gb|EEA20564.1| DNA repair protein RAD51, putative [Talaromyces marneffei ATCC
18224]
Length = 349
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 120/291 (41%), Gaps = 34/291 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + +R+ + T K LD L GG+ G +TE+ G
Sbjct: 77 LAEASKLVPMGFTTATEMHARRSELISI----TTGSKQLDTLLAGGIETGSITEIFGEFR 132
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGM-A 171
TGK+Q C L++ LP GG +G +YID E TF R++ + G+
Sbjct: 133 TGKSQLCHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLL--------AVAQRYGLVG 184
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQ 228
+E+ + + + + L + + + + LL++DS AL R Q
Sbjct: 185 EEVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLLIVDSATALYRTDFNGRGELSNRQ 244
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHI 287
L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 245 THLAKFLRTLQRLADEFGIAVVITNQVVSQVDGGPSSMFNPDPKK--------------- 289
Query: 288 VAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L+ G+ R + SP P F I GI
Sbjct: 290 -PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIREDGIG 339
>gi|50309711|ref|XP_454867.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644002|emb|CAG99954.1| KLLA0E20241p [Kluyveromyces lactis]
Length = 369
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 131/307 (42%), Gaps = 36/307 (11%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+LM++ + ++ LA S +V F TA +R E + L T K LD L
Sbjct: 86 DLMEIKGISEAKADKLLAEASRLVPMGFVTAADFHLRR--NEMI--CLTTGSKNLDTLLG 141
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G TGK+Q C L++ +P GG +G +YID E TF R++ +
Sbjct: 142 GGIETGSITELFGEFRTGKSQLCHTLAVTCQIPLDMGGGEGKCLYIDTEGTFRPIRLVSI 201
Query: 157 GASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEA 215
A F G+ + A + + + + L+ + +++ L+++DS+ A
Sbjct: 202 -AQRF-------GLDPDDALNNVAYARAYNADHQLKLLDAAAQMMSESRFSLIIVDSIMA 253
Query: 216 L----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQ 271
L G E A H L+ + + LA+ + VVTNQV Q D ++ +
Sbjct: 254 LYRTDFSGRGELSARQMH-LAKFMRSLQRLADQFGVAAVVTNQVVAQV-DGGMMFNPDPK 311
Query: 272 KMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFT 330
K + G AH+ T RL + G QR+ V SP P F
Sbjct: 312 K----------------PIGGNIMAHSSTTRLGFKKGKGPQRYCKVVDSPCLPEAECVFA 355
Query: 331 INPSGIS 337
I GI
Sbjct: 356 IYEDGIG 362
>gi|412987893|emb|CCO19289.1| DNA repair protein RAD51 homolog 1 [Bathycoccus prasinos]
Length = 321
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 131/313 (41%), Gaps = 40/313 (12%)
Query: 29 DALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRL 88
D ++ ++ KLL+ + AL+ SE+ F TA E R + T
Sbjct: 40 DVRGFSDAKVDKLLEA----CKKALSNPSEL--GGFVTAATFREMRKDVVRI----TTGS 89
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K +D L GG+ +TE+ G GKTQ C L++ LP GG V YID E TF
Sbjct: 90 KAVDEVLAGGIQTRSITEIHGEWRCGKTQLCHTLAVSTQLPFEMGGGYAKVAYIDTEGTF 149
Query: 149 TSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKL 207
S R++ EI GM E I++ + + + ++L I + + KL
Sbjct: 150 RSERIL--------EIAERYGMDGEAVLENIMIARTFTHEQMEDALLAIAGKMAEEPFKL 201
Query: 208 LVIDSMEALVPGVHEQRAP---GQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESC 264
L++DS+ A R Q L +S ++ LA+ + IV TNQV+ D
Sbjct: 202 LIVDSVMAHYRVDFTGRGELSGRQQRLGQFMSKLSKLADEFNLAIVCTNQVQS---DPGA 258
Query: 265 LYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL-VLEAKSGQRFMNVEKSPTSP 323
+ V+ I H++ AHA TIRL V + ++ R + V + P
Sbjct: 259 MAFAGVEPKKPI-------GGHVL-------AHASTIRLCVRKGRAEARVLKVMQGPDLK 304
Query: 324 PLAFSFTINPSGI 336
F I+ G+
Sbjct: 305 EQDAEFMISNGGV 317
>gi|161527599|ref|YP_001581425.1| recombinase A [Nitrosopumilus maritimus SCM1]
gi|160338900|gb|ABX11987.1| RecA/RadA recombinase-like protein [Nitrosopumilus maritimus SCM1]
Length = 217
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T L+ LD +L GG+P GV+ ++ G GTGKTQ L+L++ + G V+Y D
Sbjct: 2 ISTGLEKLDKSLFGGIPNGVIVDIFGKNGTGKTQLLLQLAINSIKKG------GHVLYFD 55
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
F R++++ S + + +I V + T+ SE S++ I +
Sbjct: 56 TTGGFRPERILDIQKESESQ--------SDFLNQITVSRLTNTSEQINSIKNI-----ER 102
Query: 204 QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEF---SRIPIVVTNQVR 256
L+VID++ L +++ S + + LA F +RIPIVVTN +R
Sbjct: 103 NFSLIVIDNITDLFSYEYQKDESIFEKNSLFMKYMHDLANFAISNRIPIVVTNMIR 158
>gi|149743044|ref|XP_001501634.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Equus
caballus]
Length = 340
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|241958150|ref|XP_002421794.1| DNA repair protein rad51 homologue, putative [Candida dubliniensis
CD36]
gi|223645139|emb|CAX39736.1| DNA repair protein rad51 homologue, putative [Candida dubliniensis
CD36]
Length = 361
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 108/264 (40%), Gaps = 41/264 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 119 LTTGSKQLDTLLGGGIETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLYID 178
Query: 144 VESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI 196
E TF R++ + + +++ E +L + ++E
Sbjct: 179 TEGTFRPNRLVSIAQRYGLNPNDCLDNVAYARAYNAEHQLNLLNIASQMMAE-------- 230
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTN 253
++ LL++DS+ +L + R + Q ++ + + LA+ I +++TN
Sbjct: 231 ------SRFSLLIVDSIMSLYRTDYAGRGELSARQTHVARFMRTLQRLADEFGIAVIITN 284
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-R 312
QV Q S ++ +K + G AHA T RL + G+ R
Sbjct: 285 QVVAQVDGMSGMFNPDPKK----------------PIGGNIIAHASTTRLSFKKGRGETR 328
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
+ SP P F I GI
Sbjct: 329 ICKIYDSPCLPESECVFAIYEDGI 352
>gi|395819764|ref|XP_003783249.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Otolemur garnettii]
Length = 340
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHISTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGARGYPGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|242767957|ref|XP_002341472.1| DNA repair protein RAD51, putative [Talaromyces stipitatus ATCC
10500]
gi|218724668|gb|EED24085.1| DNA repair protein RAD51, putative [Talaromyces stipitatus ATCC
10500]
Length = 349
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 121/290 (41%), Gaps = 32/290 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + +R+ + T K LD L GG+ G +TE+ G
Sbjct: 77 LAEASKLVPMGFTTATEMHARRSELISI----TTGSKQLDTLLAGGIETGSITEIFGEFR 132
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ 172
TGK+Q C L++ LP GG +G +YID E TF R++ + A + + +
Sbjct: 133 TGKSQLCHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAV-AQRYGLV------GE 185
Query: 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQH 229
E+ + + + + L + + + + LL++DS AL R Q
Sbjct: 186 EVLDNVAYARAYNSDHQLQLLNQASQMMCETRFSLLIVDSATALYRTDFNGRGELSNRQT 245
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHIV 288
L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 246 HLAKFLRTLQRLADEFGIAVVITNQVVSQVDGGPSSMFNPDPKK---------------- 289
Query: 289 AVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
+ G AHA T RL L+ G+ R + SP P F I GI
Sbjct: 290 PIGGNIIAHASTTRLSLKKGRGETRICKIYDSPCLPESDCLFAIREDGIG 339
>gi|255722349|ref|XP_002546109.1| DNA repair protein RAD51 [Candida tropicalis MYA-3404]
gi|240136598|gb|EER36151.1| DNA repair protein RAD51 [Candida tropicalis MYA-3404]
Length = 364
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 109/258 (42%), Gaps = 29/258 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 122 LTTGSKQLDTLLGGGIETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLYID 181
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL-Q 202
E TF R+I I G+ + +E +L I ++ +
Sbjct: 182 TEGTFRPNRLI--------SIAERYGLNANDCLDNVAYARAYNAEHQLNLLNIAAQMMAE 233
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ LL++DS+ +L + R + Q ++ + + LA+ I +V+TNQV Q
Sbjct: 234 SRFSLLIVDSIMSLYRTDYAGRGELSARQTHVARFMRTLQRLADEFGIAVVITNQVVAQV 293
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEK 318
+ ++ +K + G AHA T RL L + ++ R +
Sbjct: 294 DGMAGMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRAETRICKIYD 337
Query: 319 SPTSPPLAFSFTINPSGI 336
SP P F I GI
Sbjct: 338 SPCLPESECVFAIYEDGI 355
>gi|190347494|gb|EDK39771.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 41/264 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 91 VTTGSKQLDTLLGGGIETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLYID 150
Query: 144 VESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI 196
E TF R++ + + +++ E ++L + ++E
Sbjct: 151 TEGTFRPVRLVSIAQRYGLNPDDCLDNVAYARAYNAEHQFQLLNMAAQMMAE-------- 202
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTN 253
++ LL++DS+ +L + R + Q ++ ++ + LA+ I +V+TN
Sbjct: 203 ------SRFSLLIVDSIMSLYRTDYSGRGELSARQAHVAKYMRTLQRLADEFGIAVVITN 256
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQR 312
QV Q + ++ +K + G AH+ T RL + ++ QR
Sbjct: 257 QVVAQVDGGASMFNPDPKK----------------PIGGNIIAHSSTTRLSFRKGRAEQR 300
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
V SP P F I GI
Sbjct: 301 VCKVYDSPCLPESECVFAIYEDGI 324
>gi|71028890|ref|XP_764088.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351042|gb|EAN31805.1| hypothetical protein, conserved [Theileria parva]
Length = 286
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 119/269 (44%), Gaps = 46/269 (17%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
HL +K +D AL GG+ G V E+ GP+G+GKTQF L L+ + D V+YI
Sbjct: 27 HLMFGVKEIDQALNGGLLLGKVCEIYGPSGSGKTQFALSLTSEVLINNLIHSKDYVVLYI 86
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQ--------EMAGRILVLQPTSLSE----FT 190
TF R+ E+ S + + +KG+ + ++ + V + T E FT
Sbjct: 87 YTNGTFPIERLNEILRSKYED---AKGLIKADENFNTSQLLKNLYVEKVTDNDELYFTFT 143
Query: 191 ESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLS-WHISLITS-LAEFSRIP 248
LE+ +LQ+ VKL+VIDS+ AL V + GQ S + LI ++ +
Sbjct: 144 SKLEE----MLQHNVKLIVIDSIAALFRTVQNESYHGQRINSITKVGLIMKRISHEYNLL 199
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
I+ NQ + + PF L R S I LG W + R+++ +
Sbjct: 200 ILAINQASGVFNLSNI--PF--------LNPR----SGIKPALGEAWERCINSRILVTRR 245
Query: 309 SGQRFMNVE----------KSPTSPPLAF 327
QRF N E SP++ P+ F
Sbjct: 246 RDQRF-NREIRHFQVIFSSNSPSTYPIPF 273
>gi|348569516|ref|XP_003470544.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Cavia
porcellus]
Length = 340
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|68485285|ref|XP_713476.1| hypothetical protein CaO19.11236 [Candida albicans SC5314]
gi|68485358|ref|XP_713440.1| hypothetical protein CaO19.3752 [Candida albicans SC5314]
gi|46434928|gb|EAK94324.1| hypothetical protein CaO19.3752 [Candida albicans SC5314]
gi|46434968|gb|EAK94361.1| hypothetical protein CaO19.11236 [Candida albicans SC5314]
gi|238879694|gb|EEQ43332.1| DNA repair protein RAD51 [Candida albicans WO-1]
Length = 361
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 108/258 (41%), Gaps = 29/258 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GGV G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 119 LTTGSKQLDTLLGGGVETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLYID 178
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL-Q 202
E TF R++ I G+ + +E +L I ++ +
Sbjct: 179 TEGTFRPNRLV--------SIAQRYGLNPNDCLDNVAYARAYNAEHQLNLLNIAAEMMAE 230
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ LL++DS+ +L + R + Q ++ + + LA+ I +V+TNQV Q
Sbjct: 231 SRFSLLIVDSIMSLYRTDYAGRGELSARQTHVAKFMRTLQRLADEFGIAVVITNQVVAQV 290
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
S ++ +K + G AH+ T RL + G+ R +
Sbjct: 291 DGMSGMFNPDPKK----------------PIGGNIIAHSSTTRLSFKKGRGETRICKIYD 334
Query: 319 SPTSPPLAFSFTINPSGI 336
SP P F I GI
Sbjct: 335 SPCLPESECIFAIYEDGI 352
>gi|449432271|ref|XP_004133923.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Cucumis
sativus]
gi|449480051|ref|XP_004155785.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Cucumis
sativus]
Length = 346
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 115/268 (42%), Gaps = 35/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T LD L GG+ VTE+ G G GKTQ ++L++ +P +GG+ G +YI
Sbjct: 87 RITTSCADLDNLLGGGINVSEVTEIGGVPGIGKTQLGIQLAVNVQIPGAFGGVGGKAVYI 146
Query: 143 DVESTFTSRRMIEMGASSFPEIF-HSKGMAQEMAGRILVLQPTSLSE---------FTES 192
D E +F R +++ + ++ +S + + + ++P + E +TE
Sbjct: 147 DTEGSFMVERALQIAEACIEDMSDYSVLLKKNAIPHQIQIEPKDILENIFYFRVCSYTEQ 206
Query: 193 LEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ I K VK++++DS+ + A LS LA+ +
Sbjct: 207 IALINYLDKFITEHKDVKVVIVDSVTFHFRQNFDDLALRTRLLSEMALKFMKLAKKFSLA 266
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + + S FQ + LG W+H+ T R++L
Sbjct: 267 VVLFNQVTTKFAEGS----FQ-----------------LTLALGDSWSHSCTNRIILYWN 305
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R+ +EKSP+ + +++ GI
Sbjct: 306 GDERYAYLEKSPSLQSASAPYSVTCRGI 333
>gi|351699284|gb|EHB02203.1| Meiotic recombination protein DMC1/LIM15-like protein
[Heterocephalus glaber]
Length = 340
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|197092361|gb|ACH42253.1| RAD51A recombination protein [Triticum aestivum]
Length = 316
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 122/285 (42%), Gaps = 47/285 (16%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + T + LD L
Sbjct: 63 DLLQIKGISEAKVDKIIEAASKLVPLGFTSATQLHAQRLEIIQV----TTGSRELDKILE 118
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 119 GGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQI 178
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + L+V
Sbjct: 179 ADRFGLYGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MVETRFALMV 224
Query: 210 IDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
IDS AL G E A H L+ + + LA+ + +V++NQV Q +
Sbjct: 225 IDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVISNQVVAQVDGGAMF 283
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG 310
Q++ + G AHA T RL L G
Sbjct: 284 AGPQIKPIG-----------------GNIMAHASTTRLYLRKGKG 311
>gi|1321636|dbj|BAA10970.1| DMC1 homologue [Homo sapiens]
Length = 340
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|212546047|ref|XP_002153177.1| meiotic recombination protein (Dmc1), putative [Talaromyces
marneffei ATCC 18224]
gi|111380644|gb|ABH09699.1| DMC1-like protein [Talaromyces marneffei]
gi|210064697|gb|EEA18792.1| meiotic recombination protein (Dmc1), putative [Talaromyces
marneffei ATCC 18224]
Length = 337
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 128/323 (39%), Gaps = 42/323 (13%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEH 79
+ + A T L++ ++++ +++ A+ C P F TA+ L QR
Sbjct: 43 VASVHGATRRTLLKIKGFSEIKVEKIKDAIQ-----KCLPTANGFITAIELCHQRKKVFK 97
Query: 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGV 139
+ T K D L GG ++E+ G GKTQ +S++A LP GG +G V
Sbjct: 98 I----STGSKQFDTILGGGFQSSSISEVYGEFRCGKTQLSHTMSVIAQLPKEMGGGEGKV 153
Query: 140 IYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT-ESLEKIKV 198
YID E TF R+ +I G+ E + SE E L +
Sbjct: 154 AYIDTEGTFRPDRI--------AQIAERYGLDAESTQENISYARALNSEHQLELLNTLSK 205
Query: 199 SLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
Q +LLVIDS+ R A Q L+ + ++ LAE + +++TNQV
Sbjct: 206 EFAGGQYRLLVIDSIMNCFRVDFSGRGELAERQQKLNQFLIRLSHLAEEFNVCVLMTNQV 265
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
+ + +K V G AHA T R++L G +R
Sbjct: 266 QSDPGASALFAGADGRK----------------PVGGHVLAHASTTRVLLRKGRGDERVA 309
Query: 315 NVEKSPTSPPLAFSFTINPSGIS 337
++ SP P ++ I GI+
Sbjct: 310 KIQDSPDCPEREATYVITNGGIN 332
>gi|440492453|gb|ELQ75018.1| DNA repair protein RAD51/RHP55 [Trachipleistophora hominis]
Length = 343
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 104/259 (40%), Gaps = 43/259 (16%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGKTQ C L++ L GG G +YID E TF
Sbjct: 112 LDKLLKGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLDRENGGGSGKALYIDTEGTFRP 171
Query: 151 RRMI----EMGASS---FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
R I G S I +++ + ++LV LSE +
Sbjct: 172 ERCIAVAQRFGLDSDQVLENISYARAYNSDHQSQLLVQAAAMLSE--------------S 217
Query: 204 QVKLLVIDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
L+++DS AL G E A H L+ + ++ LA+ + +V+TNQV
Sbjct: 218 NYSLIIVDSAMALYRTDFSGRGELGARQIH-LARFLRMLLRLADEFSVAVVITNQVVASV 276
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
+ ++ +K HI+ AHA T RL L G+ R +
Sbjct: 277 DGAAAMFNADPKKP---------AGGHII-------AHASTTRLYLRKGRGETRICKIYD 320
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP P F I +G+
Sbjct: 321 SPCLPESEAVFAITANGVD 339
>gi|258597225|ref|XP_001347762.2| Rad51 homolog [Plasmodium falciparum 3D7]
gi|25991345|gb|AAN76809.1|AF452489_1 recombinase Rad51 [Plasmodium falciparum]
gi|254832605|gb|AAN35675.2| Rad51 homolog [Plasmodium falciparum 3D7]
Length = 350
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 106/254 (41%), Gaps = 30/254 (11%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LDA L GG+ G +TEL G TGK+Q C L++ LP G +G ++ID E TF
Sbjct: 117 KQLDALLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTF 176
Query: 149 TSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLL 208
R++ + A + H + I + + TE L + + LL
Sbjct: 177 RPERIVAI-AKRYG--LHP----TDCLNNIAYAKAYNCDHQTELLIDASAMMADARFALL 229
Query: 209 VIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
++DS AL + R A Q L + + +A+ + +++TNQV
Sbjct: 230 IVDSATALYRSEYIGRGELANRQSHLCRFLRGLQRIADIYGVAVIITNQV---------- 279
Query: 266 YPFQVQKMDRILKDRTRYYSH-IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSP 323
V K+D + + + H + + G AHA RL L G+ R + SP P
Sbjct: 280 ----VAKVDAM----SMFGGHEKIPIGGNIIAHASQTRLYLRKGRGESRICKIYDSPVLP 331
Query: 324 PLAFSFTINPSGIS 337
F I GI+
Sbjct: 332 EGEAVFAITEGGIA 345
>gi|209944554|gb|ACI96508.1| spindle D [Drosophila yakuba]
Length = 212
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTNQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R+ E+ A PE A +M ++ ++ L + ++ L
Sbjct: 111 HPDRLKELALKLERQYAHKVPEF-----KAHKMLQKVYYVKCHKLHQLMATVLSCHRHLA 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 NHPDIKLIVIDSL 178
>gi|123408472|ref|XP_001303202.1| DNA repair protein RAD51 homolog [Trichomonas vaginalis G3]
gi|84784038|gb|ABC61984.1| Rad51-like protein A [Trichomonas vaginalis]
gi|121884563|gb|EAX90272.1| DNA repair protein RAD51 homolog, putative [Trichomonas vaginalis
G3]
Length = 329
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 108/267 (40%), Gaps = 44/267 (16%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+L T LD L GG+ G VTE+ G TGKTQ C L++ LP GG G ++I
Sbjct: 92 YLTTGSTELDKLLGGGIETGSVTEIFGEFRTGKTQLCHTLAVTCQLPIENGGGQGKCLWI 151
Query: 143 DVESTFTSRRMIEMGASSF--------PEIFHSKGMAQEMAGRILVLQPTSLSEFTESLE 194
D E TF R+I + A F I +++ + ++LV ++E
Sbjct: 152 DTEGTFRPERIIPI-AQRFGLDPDDVMDNIAYARAYNSDHQSQLLVTASAMMAEA----- 205
Query: 195 KIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVV 251
LL++DS L + R + Q L + I LA+ I +V+
Sbjct: 206 ---------HYALLIVDSSTNLYRTDYSGRGELSARQMHLGQFLRNIQRLADEYGIAVVI 256
Query: 252 TNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ 311
TNQV Q D + ++ +K + G AHA RL L G+
Sbjct: 257 TNQVVAQV-DGAAMFVSDPKK----------------PIGGNIMAHASQTRLSLRKGRGE 299
Query: 312 -RFMNVEKSPTSPPLAFSFTINPSGIS 337
R + SP+ P +F I GI+
Sbjct: 300 TRVCKIYDSPSLPENEATFQITNGGIT 326
>gi|304367643|gb|ADM26629.1| DNA repair protein rad51 [Polypedilum vanderplanki]
Length = 347
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 31/277 (11%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
+A L+++QRA E + + T + LD L GG+ G +TE+ G +GKTQ L++
Sbjct: 93 SASLILKQRA--EQIS--ITTGSRELDKLLGGGIETGSITEVFGEFRSGKTQLAHTLAVT 148
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTS 185
LPA+ GG G +YID E TF R+ SS E F K E+ I V + +
Sbjct: 149 CQLPANSGGGQGKCLYIDTEGTFRPERL-----SSIAERF--KMDPNEVLDNIAVARAYN 201
Query: 186 LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLA 242
L + + LLV+DS AL + R A Q L+ + + +A
Sbjct: 202 TDHQLTLLVHASAIMADTRFALLVVDSATALYRTDYSGRGELAARQMHLAKFMRHLLRMA 261
Query: 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIR 302
+ I +++TNQV + S V + D +R +Y+S + + +H +
Sbjct: 262 DEFGIAVLITNQVVANVANSS-----HVWREDSKKPNRRKYHS---SCIDYH------VY 307
Query: 303 LVLEAKSGQRFMNVE--KSPTSPPLAFSFTINPSGIS 337
+ ++A+ G++ ++V+ P+ P F+I GI+
Sbjct: 308 IYVKAR-GRKSVSVKFMIHPSLPEAEAQFSIGVDGIN 343
>gi|255718721|ref|XP_002555641.1| KLTH0G14014p [Lachancea thermotolerans]
gi|238937025|emb|CAR25204.1| KLTH0G14014p [Lachancea thermotolerans CBS 6340]
Length = 333
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 105/264 (39%), Gaps = 31/264 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD+ L GGV +TE+ G GKTQ L + A LP GG +G V YID
Sbjct: 95 ISTGSKQLDSVLGGGVMTMSITEVFGEFRCGKTQMSHTLCVTAQLPRELGGGEGKVAYID 154
Query: 144 VESTFTSRRMIEMGASS--FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
E TF R+ ++ A PE E L E TE L L
Sbjct: 155 TEGTFRPERIKQIAARYDLDPE------ACLENVSYARALNSEHQMELTEQLGS---ELS 205
Query: 202 QNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+ +LL++DS+ A + R Q L+ H+S + ++E I + +TNQV+
Sbjct: 206 SGEYRLLIVDSIMANFRVDYCGRGELNERQQKLNQHLSRLNRISEEYNIAVFMTNQVQSD 265
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVE 317
+ +K V G AHA R++L G +R ++
Sbjct: 266 PGASALFAGADGRK----------------PVGGHVLAHASATRILLRKGRGDERVAKLQ 309
Query: 318 KSPTSPPLAFSFTINPSGISLLTD 341
SP P + I GI+ D
Sbjct: 310 DSPDMPERECVYIIGEKGITDAED 333
>gi|209944566|gb|ACI96514.1| spindle D [Drosophila simulans]
Length = 212
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G V EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHVVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKLERQYAHRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 DHPDIKLIVIDSL 178
>gi|126339552|ref|XP_001367929.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Monodelphis domestica]
Length = 342
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 128/303 (42%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 67 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHVTTGSQEFDKLLGGGIE 119
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 120 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGTGGYPGGKIIFIDTENTFRPDRLRDI-ADR 178
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H+ + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 179 F-NVDHNA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGVFKLLIIDSIMALFR 232
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 233 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 289
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 290 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPDMPENEATFAITAG 335
Query: 335 GIS 337
GI
Sbjct: 336 GIG 338
>gi|448638833|ref|ZP_21676503.1| DNA repair and recombination protein RadA [Haloarcula sinaiiensis
ATCC 33800]
gi|445763165|gb|EMA14368.1| DNA repair and recombination protein RadA [Haloarcula sinaiiensis
ATCC 33800]
Length = 349
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 100/232 (43%), Gaps = 54/232 (23%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L + +D L GGV +TE+ G G GK+Q +L+
Sbjct: 67 FETGSTVLERREQI----GKLSWGVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLA 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL-- 181
+ LPA +GGL+G I++D E TF R+ +M KG+A E+ +VL
Sbjct: 123 VNVQLPAEHGGLEGSAIFVDSEDTFRPERIEQM----------VKGLADEVLADTMVLHG 172
Query: 182 --------QPTS---LSEFTES-LEKIKVSLLQNQ-----------------------VK 206
PT L + S LE+I V+ N V+
Sbjct: 173 IVEEEADADPTDEALLDDLVASVLERIHVAKAFNSNHQILLAEKAQEIASESQEEEFPVR 232
Query: 207 LLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
LL +DS+ A + R A Q L+ H+ + + + + +VVTNQV
Sbjct: 233 LLAVDSLTAHFRAEYVGRGELADRQQKLNKHLHDLMRVGDLNNTAVVVTNQV 284
>gi|118151310|ref|NP_001071585.1| DNA repair protein XRCC3 [Bos taurus]
gi|122132264|sp|Q08DH8.1|XRCC3_BOVIN RecName: Full=DNA repair protein XRCC3; AltName: Full=X-ray repair
cross-complementing protein 3
gi|115304929|gb|AAI23743.1| X-ray repair complementing defective repair in Chinese hamster
cells 3 [Bos taurus]
gi|296475234|tpg|DAA17349.1| TPA: DNA repair protein XRCC3 [Bos taurus]
Length = 341
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 146/352 (41%), Gaps = 56/352 (15%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLL-----DVELSEVRSALALVSEIVCPPFQT 66
P+ +A + A+ + + K+ L L+ +L + DV+L SA L VC T
Sbjct: 10 PRIVAAVKKAK-LRSVKEVLHLSGPDLQRRTHLSSPDVQLLLRASASLLRGHGVC----T 64
Query: 67 ALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126
AL L+ Q L LDA L GG+P +TEL G + GKTQ L+L L
Sbjct: 65 ALHLLRQEGPFPEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAV 124
Query: 127 ALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILV 180
LP +GGL G +Y+ E F SRR+ ++ A + P SK +I +
Sbjct: 125 QLPPRHGGLGAGAVYVCTEDAFPSRRLQQLIAQQQRLRADVPGHVISK---IRFGHQIFI 181
Query: 181 LQPTSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLIT 239
+ + + EK+ V L + +L+VIDS+ A + A L+ +
Sbjct: 182 EHAADVDTLLQCVREKVPVLLARGMARLVVIDSVAAPFRCEFDGAA-----LALRAQRLL 236
Query: 240 SL-AEFSRI------PIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLG 292
+L AE R+ P++ NQV ++ D + LG
Sbjct: 237 ALGAELRRLSCAFRSPVLCVNQVTEAVEEQ----------------DLVAGPPGMSPALG 280
Query: 293 FHWAHAVTIRLVLEAKSGQ--------RFMNVEKSPTSPPLAFSFTINPSGI 336
WA+ + +RL+ + + + R + V +P P + S+TI G+
Sbjct: 281 ITWANQLLVRLLADRQRPEEAPLTPPGRTLRVVFAPHLPASSCSYTIAAEGV 332
>gi|291389878|ref|XP_002711438.1| PREDICTED: DMC1 dosage suppressor of mck1 homolog [Oryctolagus
cuniculus]
Length = 340
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 127/302 (42%), Gaps = 37/302 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGASGYPGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GI 336
GI
Sbjct: 334 GI 335
>gi|395538165|ref|XP_003771055.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Sarcophilus harrisii]
Length = 342
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 126/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 67 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHVTTGSQEFDKLLGGGIE 119
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G VI+ID E+TF R+ ++ +
Sbjct: 120 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGTGGYTGGKVIFIDTENTFRPDRLRDI--AD 177
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
+ H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 178 RYNVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEGGIFKLLIIDSIMALFR 232
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 233 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATLTFQADPKKP 289
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 290 I-------GGHIL-------AHASTTRICLRKGRGELRIAKIYDSPEMPENEATFAITAG 335
Query: 335 GIS 337
GI
Sbjct: 336 GIG 338
>gi|196049702|pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
gi|196049703|pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
Length = 343
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 126/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R H+ T + D L GG+
Sbjct: 68 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKRKMV----FHITTGSQEFDKLLGGGIE 120
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADR 179
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 180 F-NVDHDA-----VLDNVLYARAYTSEHQVELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 234 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 290
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 291 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 336
Query: 335 GIS 337
GI
Sbjct: 337 GIG 339
>gi|242824534|ref|XP_002488278.1| meiotic recombination protein (Dmc1), putative [Talaromyces
stipitatus ATCC 10500]
gi|218713199|gb|EED12624.1| meiotic recombination protein (Dmc1), putative [Talaromyces
stipitatus ATCC 10500]
Length = 337
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 128/323 (39%), Gaps = 42/323 (13%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEH 79
I A T L++ ++++ +++ A+ C P F TA+ L QR
Sbjct: 43 IAAVHGATRRTLLKIKGFSEIKVEKIKEAIQ-----KCLPTANGFITAMELCHQRKKVFK 97
Query: 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGV 139
+ T K DA L GG ++E+ G GKTQ +S++A LP GG +G V
Sbjct: 98 I----STGSKQFDAILGGGFSSMSISEVYGEFRCGKTQLSHTMSVIAQLPKEMGGGEGKV 153
Query: 140 IYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT-ESLEKIKV 198
Y+D E TF R+ +I G+ E + SE E L +
Sbjct: 154 AYMDTEGTFRPERI--------AQIAERYGLDAESTQENISYARALNSEHQLELLNTLSK 205
Query: 199 SLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
Q +LLVIDS+ R A Q L+ + ++ LAE + +++TNQV
Sbjct: 206 EFAGGQYRLLVIDSIMNCFRVDFSGRGELAERQQKLNQFLIRLSHLAEEFNVCVLMTNQV 265
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
+ + +K V G AHA T R++L G +R
Sbjct: 266 QSDPGASALFAGADGRK----------------PVGGHVLAHASTTRVLLRKGRGDERVA 309
Query: 315 NVEKSPTSPPLAFSFTINPSGIS 337
++ SP P ++ I GI+
Sbjct: 310 KIQDSPDCPEREATYVITNGGIN 332
>gi|114686387|ref|XP_515130.2| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Pan
troglodytes]
gi|410348666|gb|JAA40937.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination [Pan troglodytes]
gi|410348668|gb|JAA40938.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination [Pan troglodytes]
gi|410348670|gb|JAA40939.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination [Pan troglodytes]
Length = 340
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|73969089|ref|XP_849984.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog isoform
1 [Canis lupus familiaris]
Length = 340
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRVSLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|383848475|ref|XP_003699875.1| PREDICTED: DNA repair protein RAD51 homolog 4-like [Megachile
rotundata]
Length = 321
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 122/265 (46%), Gaps = 36/265 (13%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+PT L LD L GG+ G + E+ G + +GKTQ CL ++ AL + V YID
Sbjct: 80 IPTNLLSLDDILKGGLYPGQIYEICGASSSGKTQLCLTIANNVALESK-----NIVRYID 134
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
+ F+ R+ ++ + ++K + E+ RI V L + + L + VSL +
Sbjct: 135 TKRDFSGSRIEQI----LFKKNYNKQVIDEVMNRIKVCCIYKLDQLFKILRLLTVSLKEE 190
Query: 204 Q----VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEF----SRIPIVVTNQV 255
+ ++++IDS+ A++ + H + ++ I ++ F ++ IV N V
Sbjct: 191 KAEYRTRIIIIDSLPAIIFKFSQ-----SHETTVALNHIANMCHFIANEFQLSIVTVNLV 245
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG--QRF 313
+ +R+ Y+ + LG +W+H RL++E K G R
Sbjct: 246 T----------QWNTNAEGSTNTNRSENYNEVTPALGKYWSHVPNTRLLME-KIGIESRK 294
Query: 314 MNVEKS-PTSPPLAFSFTINPSGIS 337
++V KS +P +A + +IN GIS
Sbjct: 295 ISVWKSFQLAPNVACTLSINDCGIS 319
>gi|209944558|gb|ACI96510.1| spindle D [Drosophila simulans]
Length = 212
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++++ A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMDLALKLERQYAHRVPEF-----KAHKMLRKIHYVRCPKLDQLMATVLICHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 DHPDIKLIVIDSL 178
>gi|23238219|ref|NP_008999.2| meiotic recombination protein DMC1/LIM15 homolog [Homo sapiens]
gi|109094191|ref|XP_001094012.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Macaca
mulatta]
gi|397501959|ref|XP_003821641.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Pan
paniscus]
gi|13878923|sp|Q14565.2|DMC1_HUMAN RecName: Full=Meiotic recombination protein DMC1/LIM15 homolog
gi|40786809|gb|AAR89915.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Homo sapiens]
gi|47678503|emb|CAG30372.1| DMC1 [Homo sapiens]
gi|109451232|emb|CAK54477.1| DMC1 [synthetic construct]
gi|109451810|emb|CAK54776.1| DMC1 [synthetic construct]
gi|115528933|gb|AAI25164.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Homo sapiens]
gi|115529065|gb|AAI25165.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Homo sapiens]
gi|119580653|gb|EAW60249.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Homo sapiens]
gi|158258671|dbj|BAF85306.1| unnamed protein product [Homo sapiens]
gi|306921535|dbj|BAJ17847.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination [synthetic construct]
Length = 340
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|194474078|ref|NP_001124039.1| meiotic recombination protein DMC1/LIM15 homolog [Rattus
norvegicus]
gi|149065923|gb|EDM15796.1| rCG59573, isoform CRA_b [Rattus norvegicus]
Length = 340
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 119/286 (41%), Gaps = 34/286 (11%)
Query: 57 SEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKT 116
++++ P F TA E+R + H+ T + D L GG+ +TE G TGKT
Sbjct: 78 NKLIEPGFLTAFQYSEKR----KMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKT 133
Query: 117 QFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAG 176
Q L + A LP G G +I+ID E+TF R+ ++ A F + H +
Sbjct: 134 QLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDI-ADRF-NVDHDA-----VLD 186
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L + + E L+ + + KLL++DS+ AL R A Q L
Sbjct: 187 NVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIVDSIMALFRVDFSGRGELAERQQKL 246
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
+ +S + ++E + + VTNQ+ + D FQ I HI+
Sbjct: 247 AQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKPI-------GGHIL--- 293
Query: 292 GFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
AHA T R+ L G+ R + SP P +F I GI
Sbjct: 294 ----AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGI 335
>gi|311255074|ref|XP_003126070.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog isoform
1 [Sus scrofa]
Length = 340
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 125/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYSGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKK- 286
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
V G AHA T R+ L G+ R + SP P +F I
Sbjct: 287 -------------PVGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|49259489|pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
gi|49259490|pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
Length = 343
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 68 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 120
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADR 179
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 180 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 234 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 290
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 291 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 336
Query: 335 GIS 337
GI
Sbjct: 337 GIG 339
>gi|343475765|emb|CCD12932.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 520
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 60 VCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
V P ++ L+E ATE + + + LD L GG G VTEL GP G GKTQ
Sbjct: 93 VAPTIRSLRDLLELGEATELE--SVTSLCRSLDVLLGGGPRVGAVTELCGPPGVGKTQLS 150
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEI 164
++L++ LP GGLDGG ++ID E +F S R E+ ++ +
Sbjct: 151 MQLAVNCLLPKELGGLDGGCLFIDTEGSFLSERFCEIAQAAVSHV 195
>gi|68490817|ref|XP_710777.1| hypothetical protein CaO19.11244 [Candida albicans SC5314]
gi|46432020|gb|EAK91529.1| hypothetical protein CaO19.11244 [Candida albicans SC5314]
Length = 220
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 96/237 (40%), Gaps = 27/237 (11%)
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163
+TE+ G GKTQ C L + A LP GG +G V YID E TF R+ S E
Sbjct: 3 ITEVFGEFRCGKTQLCHTLCVAAQLPTDMGGGEGRVAYIDTEGTFRPDRI-----RSIAE 57
Query: 164 IFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ 223
+ A I + + E +E++ L + +LL++DS+ A +
Sbjct: 58 RYGVD--ADTCLENISYARALNSEHQIELVEQLSNELAEGTFRLLIVDSIMACFRVDYSG 115
Query: 224 RA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDR 280
R Q L+ H+S +T +AE I + +TNQV+ + +K
Sbjct: 116 RGELNERQQKLNQHLSNLTRVAEDYNIAVFLTNQVQSDPGASALFAAADGRK-------- 167
Query: 281 TRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
V G AHA R++L G +R ++ SP P + I GI
Sbjct: 168 --------PVGGHVLAHASATRILLRKGRGEERVAKLQDSPNMPEKECVYVIGEGGI 216
>gi|332231229|ref|XP_003264800.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Nomascus leucogenys]
Length = 340
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDA-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSVMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|358378198|gb|EHK15880.1| hypothetical protein TRIVIDRAFT_227821 [Trichoderma virens Gv29-8]
Length = 467
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 85/178 (47%), Gaps = 15/178 (8%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
GLDAAL GGVP G +TE G +G GKTQF L L L LPA GL +YI ES
Sbjct: 107 DGLDAALGGGVPVGHITEFTGESGVGKTQFLLSLCLAVQLPAPR-GLGKQALYISTESGL 165
Query: 149 TSRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVK 206
+RR+ +M G + E + G + G + P S+ ++ V L ++ +
Sbjct: 166 ATRRLAQMLEGNTILQEASEA-GTPASLDGIHSAVTPDLESQDHILEYQVPVLLSRHDIG 224
Query: 207 LLVIDSMEALVPGVHEQRAPGQHPLSWHI---------SLITSLAEFSRIPIVVTNQV 255
L++IDS+ A E++ G H + +L+ LA I I+V NQV
Sbjct: 225 LMIIDSVAANYRAEFERQ--GSHGSNMATRSADLIRLGALLRDLARRHSIAIIVANQV 280
>gi|367015798|ref|XP_003682398.1| hypothetical protein TDEL_0F03760 [Torulaspora delbrueckii]
gi|359750060|emb|CCE93187.1| hypothetical protein TDEL_0F03760 [Torulaspora delbrueckii]
Length = 334
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 128/322 (39%), Gaps = 39/322 (12%)
Query: 24 ITTAKDALSLTELELMK---LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHL 80
I T LS T L K L +V++ +++ A + ++ P L + ++ A
Sbjct: 40 IFTINTVLSTTRRNLAKIKGLSEVKVEKIKEAAGKIIKVGFIPATIQLDIRQKVFA---- 95
Query: 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVI 140
L T K LD+ L GG+ +TE+ G GKTQ L + A LP GG +G V
Sbjct: 96 ---LSTGSKQLDSVLGGGIMTMSITEVFGEFRCGKTQMAHTLCITAQLPREMGGGEGKVA 152
Query: 141 YIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESL-EKIKVS 199
YID E TF R+ +I G+ E + SE L E++
Sbjct: 153 YIDTEGTFRPERI--------KQIAERYGLDPEACLENISYARALNSEHQMELAEQLGEE 204
Query: 200 LLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256
L +L+V+DS+ A + R Q L+ H+ + LAE I I +TNQV+
Sbjct: 205 LSSGDYRLIVVDSIMANFRVDYCGRGELNERQQKLNQHLFKLNRLAEEFNIAIFMTNQVQ 264
Query: 257 PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMN 315
+ +K V G AHA R++L G +R
Sbjct: 265 SDPGASALFASADGRK----------------PVGGHVLAHASATRILLRKGRGEERVAK 308
Query: 316 VEKSPTSPPLAFSFTINPSGIS 337
++ SP P + I GI+
Sbjct: 309 LQDSPDMPERECVYVIGEKGIT 330
>gi|195503840|ref|XP_002098822.1| GE23723 [Drosophila yakuba]
gi|194184923|gb|EDW98534.1| GE23723 [Drosophila yakuba]
Length = 406
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 187 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTNQDF 246
Query: 149 TSRRMIEMGASSFPEIFHS--KGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QV 205
R+ E+ + H + A +M ++ ++ L + ++ L + +
Sbjct: 247 HPDRLKELALKLERQYAHKVPEFKAHKMLQKVYYVKCHKLHQLMATVLSCHRHLANHPDI 306
Query: 206 KLLVIDSM 213
KL+VIDS+
Sbjct: 307 KLIVIDSL 314
>gi|68490790|ref|XP_710790.1| hypothetical protein CaO19.3760 [Candida albicans SC5314]
gi|46432034|gb|EAK91542.1| hypothetical protein CaO19.3760 [Candida albicans SC5314]
Length = 220
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 96/237 (40%), Gaps = 27/237 (11%)
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163
+TE+ G GKTQ C L + A LP GG +G V YID E TF R+ S E
Sbjct: 3 ITEVFGEFRCGKTQLCHTLCVAAQLPTDMGGGEGRVAYIDTEGTFRPDRI-----RSIAE 57
Query: 164 IFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ 223
+ A I + + E +E++ L + +LL++DS+ A +
Sbjct: 58 RYGVD--ADTCLENISYARALNSEHQIELVEQLGNELAEGTFRLLIVDSIMACFRVDYSG 115
Query: 224 RA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDR 280
R Q L+ H+S +T +AE I + +TNQV+ + +K
Sbjct: 116 RGELNERQQKLNQHLSNLTRVAEDYNIAVFLTNQVQSDPGASALFAAADGRK-------- 167
Query: 281 TRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
V G AHA R++L G +R ++ SP P + I GI
Sbjct: 168 --------PVGGHVLAHASATRILLRKGRGEERVAKLQDSPNMPEKECVYVIGEGGI 216
>gi|343471276|emb|CCD16262.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 520
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 60 VCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
V P ++ L+E ATE + + + LD L GG G VTEL GP G GKTQ
Sbjct: 93 VAPTIRSLRDLLELGEATELE--SVTSLCRSLDVLLGGGPRVGAVTELCGPPGVGKTQLS 150
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEI 164
++L++ LP GGLDGG ++ID E +F S R E+ ++ +
Sbjct: 151 MQLAVNCLLPKELGGLDGGCLFIDTEGSFLSERFCEIAQAAVNHV 195
>gi|209944590|gb|ACI96526.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F + + Q A+ + L G+ K LD GG+ G + EL+G +GTGKTQ CL+L
Sbjct: 31 FDNSCWDISQSASNKILTGN-----KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLC 85
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG-------ASSFPEIFHSKGMAQEMAG 176
L +P GGL+G ++ID F R++ + A PE A +M
Sbjct: 86 LNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEF-----KAHKMLQ 140
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM 213
+I ++ L + ++ L+ + +KL+VIDS+
Sbjct: 141 KIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSL 178
>gi|424813640|ref|ZP_18238828.1| RecA/RadA recombinase [Candidatus Nanosalina sp. J07AB43]
gi|339758586|gb|EGQ43841.1| RecA/RadA recombinase [Candidatus Nanosalina sp. J07AB43]
Length = 225
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T K LD L GG+ GV++ G +G+GKT C+++S A +H G V YI
Sbjct: 5 RVSTGSKPLDTLLEGGIERGVISNFYGESGSGKTNACIQISAEVA-SSH-----GNVAYI 58
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMA--QEMAGRILVLQPTSLSEFTESLEKIKVSL 200
D E++F++ R ++ + + E K + Q+ G I LQ
Sbjct: 59 DTEASFSAERFAQIASEAELENVFVKDVTDFQQQKGAINSLQA----------------- 101
Query: 201 LQNQVKLLVIDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256
++ ++L+V+DSM +L V G + + LS +S ++ +A IP+V+TNQV
Sbjct: 102 MEQDLELVVVDSMVSLYRLKVDGGNASEV--NNELSEQLSKLSEIARNQDIPVVITNQVY 159
Query: 257 PQSHDE 262
D+
Sbjct: 160 TSFDDD 165
>gi|444323171|ref|XP_004182226.1| hypothetical protein TBLA_0I00440 [Tetrapisispora blattae CBS 6284]
gi|387515273|emb|CCH62707.1| hypothetical protein TBLA_0I00440 [Tetrapisispora blattae CBS 6284]
Length = 478
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 106/265 (40%), Gaps = 44/265 (16%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GG+ G +TEL G TGK+Q C L++ +P GG +G +YID
Sbjct: 238 LTTGSKNLDTLLGGGIETGSITELFGEFRTGKSQLCHTLAVTCQIPLDSGGGEGKCLYID 297
Query: 144 VESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI 196
E TF R++ + + + +++ + R+L +SE
Sbjct: 298 TEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSE-------- 349
Query: 197 KVSLLQNQVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVT 252
++ L+++DS+ AL G E A H L+ + + LA+ + +V+T
Sbjct: 350 ------SRFALVIVDSVMALYRTDFAGRGELSARQMH-LARFMRALQRLADQFGVAVVIT 402
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-Q 311
NQV Q + P + + G AH+ T RL G Q
Sbjct: 403 NQVVAQVDGAAQFNPDPKK-----------------PIGGNIMAHSSTTRLSFRKGRGCQ 445
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
R V SP P F I GI
Sbjct: 446 RVCKVIDSPCLPEADCVFAIYEDGI 470
>gi|281204720|gb|EFA78915.1| putative DNA repair protein [Polysphondylium pallidum PN500]
Length = 350
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 107/265 (40%), Gaps = 42/265 (15%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T K LD+ L GG G +TE+ G TGKTQ C L + L GG +G +YI
Sbjct: 112 QIRTGSKELDSLLEGGFETGSITEIFGEFRTGKTQICHTLCVTCQLTLAQGGGEGRALYI 171
Query: 143 DVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEK 195
D E TF R++ + G + +++ + ++LV +SE
Sbjct: 172 DTEGTFRPERLLAIAERYNLNGEHVLDNVAYARAYNSDHQMQLLVQASAMMSE------- 224
Query: 196 IKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
++ LL++DS +L + R + Q L+ + + LA+ + +V+T
Sbjct: 225 -------SRYILLIVDSATSLYRTDYSGRGELSDRQRHLARFLRALQRLADEFGVAVVIT 277
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ- 311
NQV Q + P + + HI+ AHA T RL L G+
Sbjct: 278 NQVVAQVDGGAMFNPNPNKPIG----------GHIM-------AHASTTRLSLRKGKGEN 320
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
R + SP P F I GI
Sbjct: 321 RICKIYDSPCLPEDEKQFAIYSDGI 345
>gi|337743291|gb|AEI73142.1| DMC1 [Kryptolebias marmoratus]
Length = 265
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 120/289 (41%), Gaps = 34/289 (11%)
Query: 55 LVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTG 114
L +++ FQTA +R H+ T + D L GG+ +TE G TG
Sbjct: 1 LQGKMLNVGFQTAFEYSAKRKQVSHI----TTGSQEFDKLLGGGIESMAITEAFGEFRTG 56
Query: 115 KTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEM 174
KTQ L + A LP G L G +I+ID E+TF R+ ++ A F + H +
Sbjct: 57 KTQLSHTLCVTAQLPGEDGYLGGKIIFIDTENTFRPDRLRDI-ADRF-NVDHDA-----V 109
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQH 229
+L + + E L+ + + KLL+IDS+ AL R A Q
Sbjct: 110 LDNVLYARAYTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGELAERQQ 169
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVA 289
L+ +S + ++E + + VTNQ+ + D FQ I HI+
Sbjct: 170 KLAQMLSRLQKISEEYNVAVFVTNQM---TADPGAGMTFQADPKKPI-------GGHIL- 218
Query: 290 VLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
AHA T R+ L G+ R + SP P +F I+ G++
Sbjct: 219 ------AHASTTRISLRKGRGEMRIAKIFDSPDMPENEATFAISGGGVT 261
>gi|161899443|ref|XP_001712948.1| DNA recombination and repair protein [Bigelowiella natans]
gi|75756442|gb|ABA27336.1| DNA recombination and repair protein [Bigelowiella natans]
Length = 331
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 148/350 (42%), Gaps = 56/350 (16%)
Query: 6 ISEMRLPKSIAN-IFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPF 64
IS++ + K I N IF ++ A S EL +K L+ +E L+L + V F
Sbjct: 24 ISDLDIQKLIDNGIFTINSLAKA----SKKELYSIKGLNDRKAE--KILSLAKKRVPVGF 77
Query: 65 QTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124
T ++ T+ H+ T K +D L GG+ VTE+ G + TGKTQFC L +
Sbjct: 78 ST----LKNYLKTKKQQFHISTLNKTIDNLLEGGIESSSVTEIFGESKTGKTQFCHILCV 133
Query: 125 LAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS---SFP----EIFHSKGMAQEMAGR 177
A + + VIYID E F R+IE+ +F +F+++ E +
Sbjct: 134 SAMVDNYSFVQTKKVIYIDTEGNFRPERLIEISEKFKINFDFLINNVFYARAFNTEHQFQ 193
Query: 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQHPLSWH 234
+LV S++ F+ V L+++DS AL+ + R Q L
Sbjct: 194 LLV-AAASITAFS-------------NVALIIVDSCTALLRTEYVGRGELFLRQTLLGKF 239
Query: 235 ISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
+ I L E I I++TNQV + D S++ + G
Sbjct: 240 LRNIQRLGEECNIAILLTNQVVTSNLDGMTFSA----------------ASNLKPIGGHI 283
Query: 295 WAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLA---FSFTINPSGISLLTD 341
AH R+ L+ ++ Q NV K +S L+ F I +G+ ++++
Sbjct: 284 MAHYTNTRIWLKKRTSQ--YNVMKVISSSKLSEKEVKFIIQNTGLRVVSE 331
>gi|46108550|ref|XP_381333.1| hypothetical protein FG01157.1 [Gibberella zeae PH-1]
gi|408395010|gb|EKJ74198.1| hypothetical protein FPSE_05637 [Fusarium pseudograminearum CS3096]
Length = 348
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 127/290 (43%), Gaps = 34/290 (11%)
Query: 53 LALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
LA S++V F TA + ++R +E + + T K LD L GG+ G VTEL G
Sbjct: 76 LAEASKLVPMGFTTATEMHQRR--SELI--SITTGSKNLDTLLAGGIETGSVTELFGEFR 131
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA- 171
TGK+Q C L++ LP GG +G +YID E TF R++ + A+ F G++
Sbjct: 132 TGKSQICHTLAVTCQLPFDMGGGEGKCMYIDTEGTFRPVRLLGV-ANRF-------GLSG 183
Query: 172 QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQ 228
+E+ + + + + L + + + + LL++DS +L R Q
Sbjct: 184 EEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFCGRGELSNRQ 243
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHI 287
L+ + + LA+ I +V+TNQV Q S ++ +K
Sbjct: 244 THLAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK--------------- 288
Query: 288 VAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+ G AHA T R+ L + ++ R + SP P F I GI
Sbjct: 289 -PIGGNIIAHASTTRISLKKGRAETRIAKIYDSPCLPESDTLFAIGEEGI 337
>gi|308453438|ref|XP_003089441.1| hypothetical protein CRE_02731 [Caenorhabditis remanei]
gi|308240341|gb|EFO84293.1| hypothetical protein CRE_02731 [Caenorhabditis remanei]
Length = 390
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 21/262 (8%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGKTQ C L++L LP GG +G +YID +TF
Sbjct: 140 LDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRP 199
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+I + + H + I V + + + + + +++ ++++
Sbjct: 200 ERIIAIAQRYNMDSAH-------VLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIV 252
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
D A + R A Q LS + + LA+ + +++TNQV Q + ++
Sbjct: 253 DCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQ 312
Query: 268 FQVQK--MDRILKDRTRYYSHIVAVLGFHWAHAVTI----RLVLEAKSGQ-RFMNVEKSP 320
+K I+ + + + G H++T+ RL L G+ R + +SP
Sbjct: 313 ADAKKPIGGHIIAHMSTTRLSVKVIRG----HSLTVLFFCRLYLRKGKGENRVAKMVQSP 368
Query: 321 TSPPLAFSFTINPSGISLLTDD 342
P +++I GI +D
Sbjct: 369 NLPEAEATYSITNHGIEDARED 390
>gi|169236999|ref|YP_001690199.1| DNA repair and recombination protein RadA [Halobacterium salinarum
R1]
gi|13878695|sp|Q9HMM4.2|RADA_HALSA RecName: Full=DNA repair and recombination protein RadA
gi|226736606|sp|B0R7Y4.1|RADA_HALS3 RecName: Full=DNA repair and recombination protein RadA
gi|167728065|emb|CAP14853.1| DNA repair and recombination protein RadA [Halobacterium salinarum
R1]
Length = 343
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 33/220 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R L ++P +D L GGV +TE+ G G GK+Q +L+
Sbjct: 66 FETGATVLERREQIGKLTWNIPE----VDDLLGGGVETQSITEVYGEFGAGKSQVTHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP YGGL G ++ID E TF R+ +M E + A E+ G
Sbjct: 122 VNVQLPTEYGGLHGRAVFIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGS--TDDE 179
Query: 184 TSLSEFTES-LEKIKVSLLQNQ-----------------------VKLLVIDSMEALVPG 219
+L+E ++ L+KI V+ N V++L +DS+ A
Sbjct: 180 DTLTELVDAFLDKIHVAKGFNSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRA 239
Query: 220 VHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256
+ R A Q L+ H+ + + ++VTNQV+
Sbjct: 240 EYVGRGELADRQQKLNKHLHDLEKVGNLYNAAVLVTNQVQ 279
>gi|1066001|dbj|BAA09932.1| HsLim15 [Homo sapiens]
Length = 340
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 41 LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVP 100
L + ++ +++ A ++++ P F TA E+R + H+ T + D L GG+
Sbjct: 65 LSEAKVDKIKEA---ANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIE 117
Query: 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160
+TE G TGKTQ L + A LP G G +I+ID E+TF R+ ++ A
Sbjct: 118 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADR 176
Query: 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVP 218
F + H + +L + + E L+ + + KLL+IDS+ AL
Sbjct: 177 F-NVDHDP-----VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 219 GVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDR 275
R A Q L+ +S + ++E + + VTNQ+ + D FQ
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKP 287
Query: 276 ILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPS 334
I HI+ AHA T R+ L G+ R + SP P +F I
Sbjct: 288 I-------GGHIL-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAG 333
Query: 335 GIS 337
GI
Sbjct: 334 GIG 336
>gi|308493054|ref|XP_003108717.1| hypothetical protein CRE_10879 [Caenorhabditis remanei]
gi|308248457|gb|EFO92409.1| hypothetical protein CRE_10879 [Caenorhabditis remanei]
Length = 390
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 21/262 (8%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TE+ G TGKTQ C L++L LP GG +G +YID +TF
Sbjct: 140 LDRLLGGGIETGSITEVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRP 199
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+I + + H + I V + + + + + +++ ++++
Sbjct: 200 ERIIAIAQRYNMDSAH-------VLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIV 252
Query: 211 DSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
D A + R A Q LS + + LA+ + +++TNQV Q + ++
Sbjct: 253 DCATAHFRNEYTGRGDLAERQMKLSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQ 312
Query: 268 FQVQK--MDRILKDRTRYYSHIVAVLGFHWAHAVTI----RLVLEAKSGQ-RFMNVEKSP 320
+K I+ + + + G H++T+ RL L G+ R + +SP
Sbjct: 313 ADAKKPIGGHIIAHMSTTRLSVKVIRG----HSLTVLFFCRLYLRKGKGENRVAKMVQSP 368
Query: 321 TSPPLAFSFTINPSGISLLTDD 342
P +++I GI +D
Sbjct: 369 NLPEAEATYSITNHGIEDARED 390
>gi|6321027|ref|NP_011106.1| Dmc1p [Saccharomyces cerevisiae S288c]
gi|118683|sp|P25453.1|DMC1_YEAST RecName: Full=Meiotic recombination protein DMC1
gi|171401|gb|AAA34571.1| Dmc1, partial [Saccharomyces cerevisiae]
gi|287608|dbj|BAA01637.1| hypothetical protein [Saccharomyces cerevisiae]
gi|603420|gb|AAB64706.1| Dmc1p: DNA repair protein [Saccharomyces cerevisiae]
gi|151944897|gb|EDN63156.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190405735|gb|EDV09002.1| meiotic recombination protein DMC1 [Saccharomyces cerevisiae
RM11-1a]
gi|259146109|emb|CAY79369.1| Dmc1p [Saccharomyces cerevisiae EC1118]
gi|285811814|tpg|DAA07842.1| TPA: Dmc1p [Saccharomyces cerevisiae S288c]
gi|349577841|dbj|GAA23009.1| K7_Dmc1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299885|gb|EIW10977.1| Dmc1p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|446776|prf||1912300A ISC2 gene
Length = 334
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 133/332 (40%), Gaps = 51/332 (15%)
Query: 24 ITTAKDALSLTELELMK---LLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHL 80
I T LS T L K L +V++ +++ A + ++ P T L + QR +
Sbjct: 40 IYTVNTVLSTTRRHLCKIKGLSEVKVEKIKEAAGKIIQVGFIP-ATVQLDIRQRVYS--- 95
Query: 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVI 140
L T K LD+ L GG+ +TE+ G GKTQ L + LP GG +G V
Sbjct: 96 ---LSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVA 152
Query: 141 YIDVESTFTSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESL 193
YID E TF R+ ++ S + +++ + E E +
Sbjct: 153 YIDTEGTFRPERIKQIAEGYELDPESCLANVSYARALNSEHQ--------------MELV 198
Query: 194 EKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIV 250
E++ L +L+V+DS+ A + R + Q L+ H+ + LAE + +
Sbjct: 199 EQLGEELSSGDYRLIVVDSIMANFRVDYCGRGELSERQQKLNQHLFKLNRLAEEFNVAVF 258
Query: 251 VTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG 310
+TNQV+ + +K + G AHA R++L G
Sbjct: 259 LTNQVQSDPGASALFASADGRK----------------PIGGHVLAHASATRILLRKGRG 302
Query: 311 -QRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
+R ++ SP P + I GI+ +D
Sbjct: 303 DERVAKLQDSPDMPEKECVYVIGEKGITDSSD 334
>gi|209944610|gb|ACI96536.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F + + Q A+ + L G+ K LD GG+ G + EL+G +GTGKTQ CL+L
Sbjct: 31 FDKSCWDISQSASNKILTGN-----KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLC 85
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG-------ASSFPEIFHSKGMAQEMAG 176
L +P GGL+G ++ID F R++ + A PE A +M
Sbjct: 86 LNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEF-----KAHKMLQ 140
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM 213
+I ++ L + ++ L+ + +KL+VIDS+
Sbjct: 141 KIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSL 178
>gi|30578211|gb|AAP35102.1|AF485823_1 DMC1-A [Giardia intestinalis]
Length = 389
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 115/287 (40%), Gaps = 54/287 (18%)
Query: 62 PPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLK 121
P F + ++ +E+R + T LDA L GG+ +TE+ G +GKTQ C
Sbjct: 140 PGFMSGVVALERRQRIRRI----STGCSDLDALLGGGIESMAITEVFGEFRSGKTQLCHT 195
Query: 122 LSLLAALPAHYGGLDGG-VIYIDVESTFTSRRMIEMG-------ASSFPEIFHSKGMAQE 173
+++ A LDG V Y+D E TF ++ + ++ I +++ E
Sbjct: 196 IAVTAQ-------LDGSRVAYLDTEGTFRPEKIGPIAERYKLDPTTTLSRIAYARAYTHE 248
Query: 174 MAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHP 230
+L +SE + LL+IDS+ AL R A Q
Sbjct: 249 QQIELLAAAAEQMSE--------------KKFALLIIDSLTALFRVDFTGRGELADRQQK 294
Query: 231 LSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
L H++ + LA+ I I VTNQV Q D + ++ +K +
Sbjct: 295 LGQHLASLAKLADGFNIAIFVTNQVMAQV-DGAAMFTADPKK----------------PI 337
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G AHA T RL L + + R + SP+ P +F + G+
Sbjct: 338 GGHILAHASTTRLYLRKGRGNNRVAKIYDSPSLPEAEATFAVGEQGV 384
>gi|224069256|ref|XP_002326313.1| predicted protein [Populus trichocarpa]
gi|222833506|gb|EEE71983.1| predicted protein [Populus trichocarpa]
Length = 348
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 107/252 (42%), Gaps = 44/252 (17%)
Query: 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM----- 156
G +TE+ G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 129 GSITEMYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFG 188
Query: 157 --GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSME 214
GA + +++ + R+L L+ S+ +++ + L+++DS
Sbjct: 189 LNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MVETRFALMIVDSAT 234
Query: 215 ALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQV 270
AL G E A H L+ + + LA+ + +V+TNQV Q D S ++
Sbjct: 235 ALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVITNQVVAQV-DGSAIFA--- 289
Query: 271 QKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSF 329
I + G AHA T RL L G +R V SP F
Sbjct: 290 -------------GPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARF 336
Query: 330 TINPSGISLLTD 341
I+ G++ + D
Sbjct: 337 QISAEGVTDVKD 348
>gi|449020076|dbj|BAM83478.1| DNA recombination protein DMC1 [Cyanidioschyzon merolae strain 10D]
Length = 407
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 115/267 (43%), Gaps = 37/267 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC--LKLSLLAALPAHYGGLDGGVI 140
HL T LD L GG+ +TE+ G GKTQ C L ++ AA +H G V+
Sbjct: 170 HLRTGSDALDTLLGGGLESASITEVYGEYRCGKTQLCHTLAVTAQAADESHA----GRVV 225
Query: 141 YIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSL 200
YID E F R I A+ F A ++ I + + + E L + +
Sbjct: 226 YIDTEGNFRPER-IRAIATRFSID------ADDVLENIAHARAYTTDQQLELLREAAALM 278
Query: 201 LQNQVKLLVIDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256
+++ L+++DS AL G E A QH L+ +S + LAE + +VTNQV
Sbjct: 279 CESRFALVIVDSATALYRVDYSGRGELSARQQH-LNQFMSTLGKLAEEFNVCALVTNQV- 336
Query: 257 PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH-WAHAVTIRLVLEAKSG-QRFM 314
++C P M + S+ + +G H AHA T RL L G QR
Sbjct: 337 -----QAC--PDGAAAM---------FSSNPLKPIGGHIMAHASTTRLALRKGRGEQRIA 380
Query: 315 NVEKSPTSPPLAFSFTINPSGISLLTD 341
+ SP P +F IN GI+ D
Sbjct: 381 KLVDSPCLPEGEATFEINAGGIADAAD 407
>gi|15791243|ref|NP_281067.1| DNA repair and recombination protein RadA [Halobacterium sp. NRC-1]
gi|10581871|gb|AAG20547.1| DNA repair protein [Halobacterium sp. NRC-1]
Length = 386
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 33/220 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R L ++P +D L GGV +TE+ G G GK+Q +L+
Sbjct: 109 FETGATVLERREQIGKLTWNIPE----VDDLLGGGVETQSITEVYGEFGAGKSQVTHQLA 164
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP YGGL G ++ID E TF R+ +M E + A E+ G
Sbjct: 165 VNVQLPTEYGGLHGRAVFIDSEDTFRPERIDDMVRGLSDETLQAAMEAHEIEGS--TDDE 222
Query: 184 TSLSEFTES-LEKIKVSLLQNQ-----------------------VKLLVIDSMEALVPG 219
+L+E ++ L+KI V+ N V++L +DS+ A
Sbjct: 223 DTLTELVDAFLDKIHVAKGFNSNHQMLLAEKAKEIASEHEDGDWPVRMLTVDSLTAHFRA 282
Query: 220 VHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256
+ R A Q L+ H+ + + ++VTNQV+
Sbjct: 283 EYVGRGELADRQQKLNKHLHDLEKVGNLYNAAVLVTNQVQ 322
>gi|146417037|ref|XP_001484488.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 41/259 (15%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID E TF
Sbjct: 96 KQLDTLLGGGIETGSITEVFGEFRTGKSQLCHTLAVTCQLPIDMGGGEGKCLYIDTEGTF 155
Query: 149 TSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + + +++ E ++L + ++E
Sbjct: 156 RPVRLVLIAQRYGLNPDDCLDNVAYARAYNAEHQFQLLNMAAQMMAE------------- 202
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
++ LL++DS+ +L + R + Q ++ ++ + LA+ I +V+TNQV Q
Sbjct: 203 -SRFSLLIVDSIMSLYRTDYSGRGELSARQAHVAKYMRTLQRLADEFGIAVVITNQVVAQ 261
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVE 317
+ ++ +K + G AH+ T RL + ++ QR V
Sbjct: 262 VDGGASMFNPDPKK----------------PIGGNIIAHSSTTRLSFRKGRAEQRVCKVY 305
Query: 318 KSPTSPPLAFSFTINPSGI 336
SP P F I GI
Sbjct: 306 DSPCLPESECVFAIYEDGI 324
>gi|70982368|ref|XP_746712.1| meiotic recombination protein (Dmc1) [Aspergillus fumigatus Af293]
gi|66844336|gb|EAL84674.1| meiotic recombination protein (Dmc1), putative [Aspergillus
fumigatus Af293]
gi|159123045|gb|EDP48165.1| meiotic recombination protein (Dmc1), putative [Aspergillus
fumigatus A1163]
Length = 338
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 113/278 (40%), Gaps = 31/278 (11%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F TA+ L QR + T K D+ L GG ++E+ G GKTQ +S
Sbjct: 83 FITAMELSHQRKRVVKI----STGSKQFDSILGGGFQSMSISEVFGEFRCGKTQLSHTMS 138
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
++A LP GG DG V YID E TF R+ ++ A F S AQE L
Sbjct: 139 VVAQLPKEMGGADGKVAYIDTEGTFRPERIAQI-AERFSVDPDS---AQENIAYARALNS 194
Query: 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240
E +L + + +LL+IDS+ + R A Q L+ + +
Sbjct: 195 EHQLELLNTLSR---EFAGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMRLAH 251
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300
+AE + +++TNQV+ + +K V G AHA T
Sbjct: 252 MAEEFNVCVLMTNQVQSDPGASALFAGADGRK----------------PVGGHVLAHAST 295
Query: 301 IRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
R++L G +R ++ SP P ++ I GI+
Sbjct: 296 TRVLLRKGRGEERVAKIQDSPDCPEREATYVITNGGIN 333
>gi|84996361|ref|XP_952902.1| DNA repair (Rad51 homologue) protein [Theileria annulata strain
Ankara]
gi|65303899|emb|CAI76278.1| DNA repair (Rad51 homologue) protein, putative [Theileria annulata]
Length = 369
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 110/274 (40%), Gaps = 40/274 (14%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGV G +TE++G TGK+Q C L++ LP G +G +++D E TF
Sbjct: 112 LDKLLQGGVETGSITEIIGEFKTGKSQLCHTLAVTCQLPVEQSGGEGKCLWVDSEGTFRP 171
Query: 151 RRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
R++ + A F G++ + + + + E L + + Q + LL+
Sbjct: 172 ERIVSI-AKRF-------GLSPSDCLDNVAYARAYNTDHQLELLVEASAMMAQTRFALLI 223
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS +L + R A Q L + + +A+ + +V+TNQV + S +
Sbjct: 224 VDSATSLYRSDYSGRGELASRQMHLCKFLRALQRIADTFGVAVVITNQVVARVDAMSTFF 283
Query: 267 ------------------PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
F + K + D+ HI+ AHA RL L
Sbjct: 284 GILLLYIIIYCYILINICKFYIDKF--VGNDKLPVGGHII-------AHASQTRLFLRQS 334
Query: 309 SGQ-RFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
G+ R V SP P F I GI+ D
Sbjct: 335 KGESRICKVYDSPVLPEGEAVFAITDGGINDYHD 368
>gi|209944580|gb|ACI96521.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F + + Q A+ + L G+ K LD GG+ G + EL+G +GTGKTQ CL+L
Sbjct: 31 FDKSCWDISQSASNKILTGN-----KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLC 85
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG-------ASSFPEIFHSKGMAQEMAG 176
L +P GGL+G ++ID F R++ + A PE A +M
Sbjct: 86 LNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEF-----KAHKMLQ 140
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM 213
+I ++ L + ++ L+ + +KL+VIDS+
Sbjct: 141 KIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSL 178
>gi|209944576|gb|ACI96519.1| spindle D [Drosophila melanogaster]
gi|209944602|gb|ACI96532.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKLERQYAHRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 DHPDIKLIVIDSL 178
>gi|209944572|gb|ACI96517.1| spindle D [Drosophila melanogaster]
gi|209944584|gb|ACI96523.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKLERQYAHRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 DHPDIKLIVIDSL 178
>gi|389595323|ref|XP_003722884.1| RAD51/dmc1 protein [Leishmania major strain Friedlin]
gi|3132711|gb|AAC16335.1| Dmc1 homolog [Leishmania major]
gi|323364112|emb|CBZ13119.1| RAD51/dmc1 protein [Leishmania major strain Friedlin]
Length = 364
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 127/307 (41%), Gaps = 38/307 (12%)
Query: 36 LELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAAL 95
+++ L + ++ ++ A VSE+ F T ++QR+ + T LD L
Sbjct: 85 IQIKGLSEAKVDKIIEAARRVSEV---GFITGSSCLQQRSTLLRI----STGSTALDQLL 137
Query: 96 CGG-VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMI 154
GG + +TE G TGKTQ L + LP GG +G +Y+D E TF R+
Sbjct: 138 GGGGIESRSITEAFGEFRTGKTQIGHTLCVTCQLPLEMGGGNGKAVYVDTEGTFRPERI- 196
Query: 155 EMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM 213
E F GM + + ILV + + L + + ++Q LLV+DS+
Sbjct: 197 ----RPIAERF---GMDSNSVLDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLLVVDSI 249
Query: 214 EALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQV 270
AL R A Q L+ +S + +AE I + +TNQV S
Sbjct: 250 TALFRVDFSGRGELAERQQKLAKMLSQLIKIAEEFNIAVYITNQVVSDPGGASMF----- 304
Query: 271 QKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSF 329
+ + HI+ AHA T RL L G QR + SP+ P L +
Sbjct: 305 -----VADPKKPVGGHIL-------AHASTTRLSLRKGRGDQRVCKIFDSPSLPELECVY 352
Query: 330 TINPSGI 336
+I+ GI
Sbjct: 353 SISEQGI 359
>gi|225680556|gb|EEH18840.1| DNA repair and recombination protein radA [Paracoccidioides
brasiliensis Pb03]
Length = 337
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 134/329 (40%), Gaps = 54/329 (16%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEH 79
+ + A T L++ +V++ +++ A+ C P F TA+ L QR
Sbjct: 43 VASVHGATRKTLLKIKGFSEVKVEKIKEAVQK-----CQPSASGFITAMELGHQRKRVVK 97
Query: 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGV 139
+ T K D+ L GG ++E+ G GKTQ +S++A LP GG +G V
Sbjct: 98 I----STGSKQFDSILAGGFQSMSISEVYGEFRCGKTQLSHTMSVVAQLPKDMGGAEGKV 153
Query: 140 IYIDVESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES 192
YID E TF R+ ++ S+ I +++ + E L L T EF S
Sbjct: 154 AYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQ---LELLNTLSKEFAGS 210
Query: 193 LEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPI 249
+ +LL+IDS+ + R A Q L+ + + +AE + +
Sbjct: 211 -----------EYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCV 259
Query: 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS 309
++TNQV+ + +K V G AHA T R++L
Sbjct: 260 LMTNQVQSDPGASALFAGADGRK----------------PVGGHILAHASTTRVLLRKGR 303
Query: 310 G-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
G +R ++ SP P ++ I GI+
Sbjct: 304 GEERVAKIQDSPDCPEREATYVITNGGIN 332
>gi|156098342|ref|XP_001615203.1| DNA repair protein RAD51 [Plasmodium vivax Sal-1]
gi|148804077|gb|EDL45476.1| DNA repair protein RAD51, putative [Plasmodium vivax]
Length = 350
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 106/254 (41%), Gaps = 30/254 (11%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD+ L GG+ G +TEL G TGK+Q C L++ LP G +G ++ID E TF
Sbjct: 117 KQLDSLLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTF 176
Query: 149 TSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLL 208
R++ + A + H + I + + TE L + + LL
Sbjct: 177 RPERIVAI-AKRYG--LHP----TDCLNNIAYAKAYNCDHQTELLIDASAMMADARFALL 229
Query: 209 VIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
++DS AL + R A Q L + + +A+ + +++TNQV
Sbjct: 230 IVDSATALYRSEYIGRGELASRQSHLCRFLRGLQRIADIYGVAVIITNQV---------- 279
Query: 266 YPFQVQKMDRILKDRTRYYSH-IVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSP 323
V K+D + + + H + + G AHA RL L G+ R + SP P
Sbjct: 280 ----VAKVDAM----SMFGGHEKIPIGGNIIAHASQTRLYLRKGRGESRICKIYDSPVLP 331
Query: 324 PLAFSFTINPSGIS 337
F I GI+
Sbjct: 332 EGEAVFAITEGGIA 345
>gi|209944614|gb|ACI96538.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F + + Q A+ + L G+ K LD GG+ G + EL+G +GTGKTQ CL+L
Sbjct: 31 FDKSCWDISQSASNKILTGN-----KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLC 85
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG-------ASSFPEIFHSKGMAQEMAG 176
L +P GGL+G ++ID F R++ + A PE A +M
Sbjct: 86 LNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEF-----KAHKMLQ 140
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM 213
+I ++ L + ++ L+ + +KL+VIDS+
Sbjct: 141 KIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSL 178
>gi|209944586|gb|ACI96524.1| spindle D [Drosophila melanogaster]
gi|209944594|gb|ACI96528.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKLERQYAHRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 DHPDIKLIVIDSL 178
>gi|255718911|ref|XP_002555736.1| KLTH0G16148p [Lachancea thermotolerans]
gi|238937120|emb|CAR25299.1| KLTH0G16148p [Lachancea thermotolerans CBS 6340]
Length = 478
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 31/252 (12%)
Query: 20 AARNITTAKDALSLTELELMKLLDVELSE-VRSALALVSEI------VCPPFQTALLLME 72
A +N T + L+L EL KL+ +++ V+ AL E + PP Q + E
Sbjct: 25 AKQNGVTVVEFLTLNPDELTKLVTRSINDIVKFQNALKQEFRAQVFELNPPKQVS----E 80
Query: 73 QRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHY 132
Q + G + +D L GG+ +TE+ G + TGK+QF ++LSL LP
Sbjct: 81 QDCSLAFTSGD-----RDVDDLLGGGLRTHGITEIFGSSSTGKSQFLMQLSLCVQLPKSL 135
Query: 133 GGLDGGVIYIDVESTFTSRRMIEM-GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTE 191
GGLDG +YI E +RR+ EM + S + F S ++Q+ I + L+ E
Sbjct: 136 GGLDGKCVYITTEGDLPTRRLDEMIRSKSQKDGFQS--LSQD---NIFTVNCNDLAN-QE 189
Query: 192 SLEKIKVSLL---QNQVKLLVIDSMEALVPGVHEQRA--PGQHPLSWHISLITSLAEFS- 245
+ +++ +L + ++L+++DS+ V E+R+ Q + + +L FS
Sbjct: 190 HILNVQLPILMERNHDIRLIIVDSVSHHVRVELERRSFKDSQDNRHYVDKMAQNLLNFSI 249
Query: 246 --RIPIVVTNQV 255
+ +VV NQV
Sbjct: 250 KHSVAVVVANQV 261
>gi|222481028|ref|YP_002567265.1| DNA repair and recombination protein RadA [Halorubrum lacusprofundi
ATCC 49239]
gi|222453930|gb|ACM58195.1| DNA repair and recombination protein RadA [Halorubrum lacusprofundi
ATCC 49239]
Length = 343
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 119/289 (41%), Gaps = 60/289 (20%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L ++ +D L GG+ +TE+ G +GK+Q +++
Sbjct: 66 FETGATVLERREEI----GKLSWQIDEVDDLLGGGIETQSITEVYGEFASGKSQVTHQMA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LPA +GGLDGG I++D E TF R+ +M +I +A EM R + P
Sbjct: 122 VNVQLPAEHGGLDGGCIFVDSEDTFRPERIDDMVRGLDDDI-----LADEMERREIEGTP 176
Query: 184 TSLSEFTE----SLEKIKVSLLQNQ-----------------------VKLLVIDSMEAL 216
E L++I V+ N ++++ +DS+ A
Sbjct: 177 NDEEAMEELIAAFLDQIHVAKAFNSNHQILLAEKAKELAGELEESEWPIRIVCVDSLTAH 236
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R A Q L+ H+ + + + I+VTNQV
Sbjct: 237 FRAEYVGRGELADRQQKLNKHLHDLMRIGDLFNTAILVTNQV--------------ASNP 282
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPT 321
D D T+ A+ G HA T R+ L ++K +R + + +P
Sbjct: 283 DSYFGDPTQ------AIGGNILGHASTFRMYLRKSKGNKRIVRLVDAPN 325
>gi|448731443|ref|ZP_21713743.1| DNA repair and recombination protein RadA [Halococcus
saccharolyticus DSM 5350]
gi|445792196|gb|EMA42808.1| DNA repair and recombination protein RadA [Halococcus
saccharolyticus DSM 5350]
Length = 344
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 41/229 (17%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L ++ +D L GGV +TE+ G G GK+Q +LS
Sbjct: 67 FETGANVLERRNEI----GKLSWQVDEVDDLLGGGVETQSITEVYGEFGAGKSQVTHQLS 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP YGGL+G I+ID E TF R+ +M P+ + +A + R + P
Sbjct: 123 VNVQLPKEYGGLEGSAIFIDSEDTFRPERIAQM-VRGLPD----EAIAAALEAREIEGGP 177
Query: 184 TS---LSEFTES-LEKIKVSLLQNQ-----------------------VKLLVIDSMEAL 216
S + + ES L+ I V+ N V+L+ IDS+ A
Sbjct: 178 ESEDAMDQLIESVLDNIHVAKAFNSNHQILLAQKAQDIASEHEDSEWPVRLVCIDSLTAH 237
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSH 260
+ R A Q L+ H+ I + VVTNQV P S+
Sbjct: 238 FRAEYVGRGELASRQQKLNKHLHDIDKVGNLYNAATVVTNQVASNPDSY 286
>gi|448573639|ref|ZP_21641122.1| DNA repair and recombination protein RadA [Haloferax lucentense DSM
14919]
gi|445718545|gb|ELZ70235.1| DNA repair and recombination protein RadA [Haloferax lucentense DSM
14919]
Length = 343
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 33/225 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T +++E+R G L ++ +D L GG+ +TE+ G G GK+Q +L+
Sbjct: 66 FETGSMVLERRQQI----GKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGL GG I+ID E TF R+ +M E + +EM G I +
Sbjct: 122 VNVQLPPEQGGLGGGCIFIDSEDTFRPERIDDMVRGLEDEALEATLEDREMEGSI-DDEE 180
Query: 184 TSLSEFTESLEKIKVSLLQNQ-----------------------VKLLVIDSMEALVPGV 220
T + + L+KI V+ N V+LL +DS+ A
Sbjct: 181 TMQALVDDFLDKIHVAKAFNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAE 240
Query: 221 HEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSH 260
+ R A Q L+ H+ + + + I+VTNQV P S+
Sbjct: 241 YVGRGELAERQQKLNKHLHDLMRIGDLFNTGILVTNQVASNPDSY 285
>gi|209944606|gb|ACI96534.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKLERQYAHRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 DHPDIKLIVIDSL 178
>gi|358374534|dbj|GAA91125.1| meiotic recombination protein Dmc1 [Aspergillus kawachii IFO 4308]
Length = 337
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 113/281 (40%), Gaps = 37/281 (13%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F TA+ L QR + T K D+ L GG ++E+ G GKTQ +S
Sbjct: 82 FITAMELCHQRKRIVRI----STGSKQFDSILGGGFQSMSISEVFGEFRCGKTQLSHTMS 137
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF---PEIFHSKGMAQEMAGRILV 180
++A LP GG DG V YID E TF R+ ++ A F P+ AQE
Sbjct: 138 VVAQLPKELGGADGKVAYIDTEGTFRPERIAQI-AERFGVDPD------AAQENIAYARA 190
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISL 237
L E +L K + +LL+IDS+ + R A Q L+ +
Sbjct: 191 LNSEHQLELLNTLSK---EFAGGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMK 247
Query: 238 ITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAH 297
+ +AE I +++TNQV+ + +K V G AH
Sbjct: 248 LAHMAEEFNICVLMTNQVQSDPGASALFAGADGRK----------------PVGGHVLAH 291
Query: 298 AVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
A R++L G +R ++ SP P ++ I GI+
Sbjct: 292 ASATRVLLRKGRGEERVAKIQDSPDCPEREATYVITNGGIN 332
>gi|146102147|ref|XP_001469294.1| RAD51/dmc1 protein [Leishmania infantum JPCM5]
gi|398023821|ref|XP_003865072.1| RAD51/dmc1 protein [Leishmania donovani]
gi|134073663|emb|CAM72400.1| RAD51/dmc1 protein [Leishmania infantum JPCM5]
gi|322503308|emb|CBZ38393.1| RAD51/dmc1 protein [Leishmania donovani]
Length = 287
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 101/245 (41%), Gaps = 30/245 (12%)
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ +TE G TGKTQ L + LP GG +G +Y+D E TF R+
Sbjct: 63 GGIESRSITEAFGEFRTGKTQIGHTLCVTCQLPLEMGGGNGKAVYVDTEGTFRPERI--- 119
Query: 157 GASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEA 215
E F GM + + ILV + + L + + ++Q LLV+DS+ A
Sbjct: 120 --RPIAERF---GMDSNSVLDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLLVVDSITA 174
Query: 216 LVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQK 272
L R A Q L+ +S + +AE I + +TNQV S
Sbjct: 175 LFRVDFSGRGELAERQQKLAKMLSQLMKIAEEFNIAVYITNQVVSDPGGASMF------- 227
Query: 273 MDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTI 331
+ + HI+ AHA T RL L G QR + SP+ P L ++I
Sbjct: 228 ---VADPKKPVGGHIL-------AHASTTRLSLRKGRGDQRVCKIFDSPSLPELECVYSI 277
Query: 332 NPSGI 336
+ GI
Sbjct: 278 SEQGI 282
>gi|209944556|gb|ACI96509.1| spindle D [Drosophila simulans]
Length = 212
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKLERQYAHRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 DHPDIKLIVIDSL 178
>gi|16605546|emb|CAC86603.1| Rad51A protein [Physcomitrella patens]
gi|16605577|emb|CAC82996.1| Rad51A protein [Physcomitrella patens]
Length = 342
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 126/300 (42%), Gaps = 46/300 (15%)
Query: 47 SEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTE 106
++V + +++V F +A + EQRA E + + T K D L GG+ G +TE
Sbjct: 72 AKVDKIIEAATKLVPMGFTSAKQMHEQRA--ELI--QITTGAKEFDNILEGGIETGSITE 127
Query: 107 LVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM-------GAS 159
+ G +GK+Q C L + LP GG +G +YID E TF +R++++ G
Sbjct: 128 IYGEFRSGKSQICHTLCVTCQLPLDQGGGEGKALYIDAEGTFRPQRLLQIAEKYGLNGQD 187
Query: 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPG 219
+ +++ + ++LV + ++E + L+V+DS AL
Sbjct: 188 VLDNVAYARAYNTDHQMKLLVEAASMMAE--------------TRFALMVVDSSTALYRT 233
Query: 220 VHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI 276
+ R A Q L+ + +A+ I +V+TNQV Q D S ++ K
Sbjct: 234 DYSGRGELAARQVHLAKFLRGCQKIADEFGIAVVITNQVVAQV-DGSAMFNGPQHK---- 288
Query: 277 LKDRTRYYSHIVAVLGFHWAHAVTIRL-VLEAKSGQRFMNVEKSPTSPPLAFSFTINPSG 335
+ G AHA T RL V + + +R + V SP F I G
Sbjct: 289 ------------PIGGNIIAHASTTRLSVRKGRGEERVIKVVASPCLAEQEARFQITNEG 336
>gi|159118412|ref|XP_001709425.1| DNA repair protein RAD51 [Giardia lamblia ATCC 50803]
gi|33667818|gb|AAQ24509.1| Dmc1a [Giardia intestinalis]
gi|157437541|gb|EDO81751.1| DNA repair protein RAD51 [Giardia lamblia ATCC 50803]
Length = 389
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 115/287 (40%), Gaps = 54/287 (18%)
Query: 62 PPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLK 121
P F + ++ +E+R + T LDA L GG+ +TE+ G +GKTQ C
Sbjct: 140 PGFMSGVVALERRQRIRRI----STGCSDLDALLGGGIESMAITEVFGEFRSGKTQLCHT 195
Query: 122 LSLLAALPAHYGGLDGG-VIYIDVESTFTSRRMIEMG-------ASSFPEIFHSKGMAQE 173
+++ A LDG V Y+D E TF ++ + ++ I +++ E
Sbjct: 196 IAVTAQ-------LDGSRVAYLDTEGTFRPEKIGPIAERYKLDPTTTLSRIAYARAYTHE 248
Query: 174 MAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHP 230
+L +SE + LL+IDS+ AL R A Q
Sbjct: 249 QQIELLAAAAEQMSE--------------KKFALLIIDSLTALFRVDFTGRGELADRQQK 294
Query: 231 LSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
L H++ + LA+ I I VTNQV Q D + ++ +K +
Sbjct: 295 LGQHLASLAKLADEFNIAIFVTNQVMAQV-DGAAMFTADPKK----------------PI 337
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G AHA T RL L + + R + SP+ P +F + G+
Sbjct: 338 GGHILAHASTTRLYLRKGRGNNRVAKIYDSPSLPEAEATFAVGEQGV 384
>gi|327292132|ref|XP_003230774.1| PREDICTED: DNA repair protein RAD51 homolog 3-like, partial [Anolis
carolinensis]
Length = 186
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+E+ A G + T LD L GG+ G +TE+ G G GKTQ C++L++
Sbjct: 37 TALELLEEEQAQ----GFIVTFCSALDGVLGGGIQLGKITEICGAPGVGKTQLCMQLTVD 92
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159
+P +GGL G ++ID E +F R+ +M +
Sbjct: 93 IQIPESFGGLAGEAVFIDTEGSFMVDRVADMAVA 126
>gi|448544133|ref|ZP_21625446.1| DNA repair and recombination protein RadA [Haloferax sp. ATCC
BAA-646]
gi|448551145|ref|ZP_21629287.1| DNA repair and recombination protein RadA [Haloferax sp. ATCC
BAA-645]
gi|448558362|ref|ZP_21633036.1| DNA repair and recombination protein RadA [Haloferax sp. ATCC
BAA-644]
gi|445705637|gb|ELZ57530.1| DNA repair and recombination protein RadA [Haloferax sp. ATCC
BAA-646]
gi|445710701|gb|ELZ62499.1| DNA repair and recombination protein RadA [Haloferax sp. ATCC
BAA-645]
gi|445713250|gb|ELZ65029.1| DNA repair and recombination protein RadA [Haloferax sp. ATCC
BAA-644]
Length = 343
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 33/225 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T +++E+R G L ++ +D L GG+ +TE+ G G GK+Q +L+
Sbjct: 66 FETGSMVLERRQQI----GKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGL GG I+ID E TF R+ +M E + +EM G I +
Sbjct: 122 VNVQLPPEQGGLGGGCIFIDSEDTFRPERIDDMVRGLEDEALEATLEDREMEGSI-DDEE 180
Query: 184 TSLSEFTESLEKIKVSLLQNQ-----------------------VKLLVIDSMEALVPGV 220
T + + L+KI V+ N V+LL +DS+ A
Sbjct: 181 TMKALVDDFLDKIHVAKAFNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAE 240
Query: 221 HEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSH 260
+ R A Q L+ H+ + + + I+VTNQV P S+
Sbjct: 241 YVGRGELAERQQKLNKHLHDLMRIGDLFNTGILVTNQVASNPDSY 285
>gi|242004733|ref|XP_002423233.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506212|gb|EEB10495.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 341
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 124/306 (40%), Gaps = 39/306 (12%)
Query: 43 DVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFG 102
+ ++ +++ A A +I F TAL + +R + T + LD + GG+
Sbjct: 68 EAKVDKIKEACA---KIYTVHFSTALEVSNKRKQV----FKISTGSQELDKLIGGGIESM 120
Query: 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFP 162
+TE G TGKTQ L + A LP G G VI++D E TF R+ + A F
Sbjct: 121 AITEAFGEFRTGKTQMSHTLCVTAQLPNDTGYTGGKVIFLDTEHTFRPDRL-RLIADRFD 179
Query: 163 EIFHSKGMAQ-EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPG 219
++Q E+ G +L + + E L+ + + KLLV+DS+ AL
Sbjct: 180 -------LSQEEVLGNVLYARAYTSEHQQELLDYVAAKFYEEAGIYKLLVVDSIMALFRV 232
Query: 220 VHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI 276
+ R A Q L+ +S + ++E + + +TNQ+ + D FQ
Sbjct: 233 DYSGRGELADRQQKLAQLMSRLQKISEEYNVAVFITNQM---TADPGATLSFQADPKK-- 287
Query: 277 LKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSG 335
+ G AHA T RL G+ R V SP P +F I G
Sbjct: 288 ------------PIGGNILAHASTTRLSFRKGRGEIRIAKVYDSPDMPENEATFAITAGG 335
Query: 336 ISLLTD 341
I D
Sbjct: 336 IDDAKD 341
>gi|433417120|ref|ZP_20404636.1| DNA repair and recombination protein RadA [Haloferax sp. BAB2207]
gi|432200139|gb|ELK56249.1| DNA repair and recombination protein RadA [Haloferax sp. BAB2207]
Length = 343
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 33/225 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T +++E+R G L ++ +D L GG+ +TE+ G G GK+Q +L+
Sbjct: 66 FETGSMVLERRQQI----GKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGL GG I+ID E TF R+ +M E + +EM G I +
Sbjct: 122 VNVQLPPEQGGLGGGCIFIDSEDTFRPERIDDMVRGLEDEALEATLEDREMEGSI-DDEE 180
Query: 184 TSLSEFTESLEKIKVSLLQNQ-----------------------VKLLVIDSMEALVPGV 220
T + + L+KI V+ N V+LL +DS+ A
Sbjct: 181 TMQALVDDFLDKIHVAKAFNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAE 240
Query: 221 HEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSH 260
+ R A Q L+ H+ + + + I+VTNQV P S+
Sbjct: 241 YVGRGELAERQQKLNKHLHDLMRIGDLFNTGILVTNQVASNPDSY 285
>gi|307352867|ref|YP_003893918.1| DNA repair and recombination protein RadA [Methanoplanus
petrolearius DSM 11571]
gi|307156100|gb|ADN35480.1| DNA repair and recombination protein RadA [Methanoplanus
petrolearius DSM 11571]
Length = 323
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 46/288 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+ ++E+R L +P DA + GG+ + E G G+GK+Q +++
Sbjct: 66 FRKGTDVLEERKKVRKLTTFVPE----FDALMGGGLETMSIIEFYGEFGSGKSQIAHQMA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM----------GASSFPEIFHSKGMAQE 173
+ A LP GGL+G VIYID E+TF R+ +M F E H +A+
Sbjct: 122 VNAQLPEDVGGLNGSVIYIDTENTFRPERIRQMVEGLDLEDVPSPEEFLEHIH---VAEA 178
Query: 174 MAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQHP 230
+L ++ E L++ L KL+V+DS+ A + R Q
Sbjct: 179 FTSDHQMLLLDNVRELAAELKETDKPL-----KLIVVDSLMAHFRAEYAGRGTLSLRQQK 233
Query: 231 LSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
L+ H+ + LA+ ++VTNQV+ D T+
Sbjct: 234 LNKHMYDLAKLAKEFNAVVIVTNQVQSNPA--------------VFFGDPTK------PT 273
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
G HA R+ L ++K G+R + SP P +F++ +G+
Sbjct: 274 GGNIVGHASKFRVYLRKSKGGKRVAKLVDSPDQPEGEAAFSVEMAGLK 321
>gi|209944578|gb|ACI96520.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKLERQYAHRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 DHPDIKLIVIDSL 178
>gi|440797025|gb|ELR18120.1| DNA repair protein XRCC3, putative [Acanthamoeba castellanii str.
Neff]
Length = 403
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 141/307 (45%), Gaps = 31/307 (10%)
Query: 11 LPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLL 70
L + +A + + + TA+D L + + EL ++L E R+ L VS +CP AL L
Sbjct: 40 LAQRLALLEKSLRVRTAEDLLKVPKAELKRVLPGAAVEARNLLHEVSIHLCPAPLPALAL 99
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+ T L P LD L GG+ +TE+ G AG+GKTQ CL+L+L LP
Sbjct: 100 ASDPSFTHKLKLGCPL----LDQCLGGGLLPRHITEIAGEAGSGKTQLCLQLALQVQLPP 155
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGAS---SFPEIFHSKGMAQEMAGRILVLQPTSLS 187
GGL GG IYI E F RR+ ++ + +F + ++ I + S+
Sbjct: 156 EEGGLGGGAIYIGTEGNFPQRRLDQLHEAFRHKHAHVFPPRRKGFDLRDNIYIKHVGSID 215
Query: 188 E-FTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS-LAEFS 245
+ F L+++ + Q V+L+++DS+ AL L + TS + E S
Sbjct: 216 QLFHSMLKQVPPLVQQRNVRLVIVDSIAAL--------------LRYEYGSGTSQMVERS 261
Query: 246 RIPIVVTNQVRPQSHDESCLYPFQVQKMDR-------ILKDRTRYYSHIVAVLGFHWAHA 298
R+ NQ++ Q D+ + + ++ +L D + +V LG W++
Sbjct: 262 RVLFSQANQLK-QIADQLQVVVVVINQVSDYVDDSRLVLSDFAAHKKRVVPALGLAWSNC 320
Query: 299 VTIRLVL 305
+ RL+L
Sbjct: 321 INSRLLL 327
>gi|255728639|ref|XP_002549245.1| meiotic recombination protein DMC1 [Candida tropicalis MYA-3404]
gi|240133561|gb|EER33117.1| meiotic recombination protein DMC1 [Candida tropicalis MYA-3404]
Length = 221
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 97/249 (38%), Gaps = 41/249 (16%)
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA----- 158
+TE+ G GKTQ C L + A LP GG +G V YID E TF R+ +
Sbjct: 3 ITEVFGEFRCGKTQLCHTLCVAAQLPRDMGGAEGRVAYIDTEGTFRPDRIRSIAERYGVD 62
Query: 159 --SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ I +++ + E E +E++ + +LL++DS+ A
Sbjct: 63 PDTCLENISYARALNSEHQ--------------IELVEQLGHEFAEGTFRLLIVDSIMAC 108
Query: 217 VPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
R Q L+ H+S +T +AE I + +TNQV+ S +K
Sbjct: 109 FRVDFSGRGELNERQQKLNQHLSNLTRVAEDYNIAVFLTNQVQSDPGASSLFAAADGRK- 167
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTIN 332
V G AHA R++L G +R ++ SP P + I
Sbjct: 168 ---------------PVGGHVLAHASATRILLRKGRGEERVAKLQDSPNMPEKECVYVIG 212
Query: 333 PSGISLLTD 341
GI TD
Sbjct: 213 NGGIRDSTD 221
>gi|209944600|gb|ACI96531.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F + + Q A+ + L G+ K LD GG+ G + EL+G +GTGKTQ CL+L
Sbjct: 31 FDKSCWDISQSASNKILTGN-----KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLC 85
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG-------ASSFPEIFHSKGMAQEMAG 176
L +P GGL+G ++ID F R++ + A PE A +M
Sbjct: 86 LNVQIPKAAGGLEGSALFIDTRQDFHPDRLMGLALKLERQYAHRVPEF-----KAHKMLQ 140
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM 213
+I ++ L + ++ L+ + +KL+VIDS+
Sbjct: 141 KIHYVRCPKLDQLMATVLSCHRHLVDHPDIKLIVIDSL 178
>gi|361127985|gb|EHK99937.1| putative Meiotic recombination protein DMC1 [Glarea lozoyensis
74030]
Length = 314
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 29/231 (12%)
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163
++E+ G GKTQ ++++A LP GG +G V YID E TF R++E+ A F
Sbjct: 79 ISEVYGEFRCGKTQLAHTMAVIAQLPKEMGGAEGKVAYIDTEGTFRPERIMEI-AERF-- 135
Query: 164 IFHSKGMAQEMAGRILVLQPTSLSEF-TESLEKIKVSLLQNQVKLLVIDSMEALVPGVHE 222
G+ + A + SE TE LE + + N+ +LL+IDS+ AL +
Sbjct: 136 -----GVDPDQACENIAYARAQNSEMQTELLESLAANFATNEYRLLIIDSVMALYRTDYS 190
Query: 223 QR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKD 279
R + Q L + T +AE + +++TNQV + +K
Sbjct: 191 GRGELSERQQVLGSFLRRATQMAEEFNLAVLMTNQVMSDPGASALFAGADGRK------- 243
Query: 280 RTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSF 329
V G AHA T RL+L G +R + SP P +++
Sbjct: 244 ---------PVGGHILAHASTTRLLLRKGRGEERVAKIVDSPGIYPSSYNI 285
>gi|304569601|gb|ADM45305.1| Dmc1 [Litopenaeus vannamei]
Length = 341
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 118/282 (41%), Gaps = 37/282 (13%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F TAL++ E+R L + T LDA L GG+ +TE+ G TGKTQ L
Sbjct: 85 FVTALVMCEKR----RLVFRVSTGSAELDALLGGGIESMAITEVFGEFRTGKTQISHTLC 140
Query: 124 LLAALPAHYGGLDGG-VIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVL 181
+ A +P G GG VI+ID E+TF R+ I + Q+ +L
Sbjct: 141 VTAQIPNEAGTYSGGKVIFIDTENTFRPDRL--------RPIADRYNLEQDAVLDNVLYT 192
Query: 182 QPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHIS 236
+ + E L+ + + KLL++DS+ AL R A Q L+ ++S
Sbjct: 193 RAFTSEHQLEILDHVAAQFHEEPGIFKLLIVDSVMALFRVDFSGRGELADRQQKLAQYMS 252
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+ ++E + + +TNQ+ + D FQ I HI+ A
Sbjct: 253 RLQKISEEYNVSVFITNQM---TADPGAAMSFQADPKKPI-------GGHIL-------A 295
Query: 297 HAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
HA T R+ L G+ R + SP P +F I GI+
Sbjct: 296 HASTTRVCLRKGRGETRIAKIYDSPELPENECTFAITAGGIA 337
>gi|358396157|gb|EHK45544.1| meiosis defective protein MEI3, partial [Trichoderma atroviride IMI
206040]
Length = 351
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 126/288 (43%), Gaps = 34/288 (11%)
Query: 56 VSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGK 115
S++V F TA + ++R +E + + T K LD L GG+ G VTEL G TGK
Sbjct: 82 ASKLVPMGFTTATEMHQRR--SELI--SITTGSKNLDTLLAGGIETGSVTELFGEFRTGK 137
Query: 116 TQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEM 174
+Q C L++ LP GG +G +YID E TF R++ + A+ F G++ +E+
Sbjct: 138 SQICHTLAVTCQLPFDMGGGEGKCLYIDTEGTFRPVRLLAV-ANRF-------GLSGEEV 189
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQHPL 231
+ + + + L + + + + LL++DS +L R Q L
Sbjct: 190 LDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSLYRTDFTGRGELSNRQTHL 249
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
+ + + LA+ I +V+TNQV Q S ++ +K +
Sbjct: 250 ARFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPKK----------------PI 293
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGIS 337
G AHA T R+ L + ++ R + SP P F I GI+
Sbjct: 294 GGNIIAHASTTRISLKKGRAETRIAKIYDSPCLPESDTLFAIAEDGIT 341
>gi|401430004|ref|XP_003879484.1| RAD51/dmc1 protein [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495734|emb|CBZ31040.1| RAD51/dmc1 protein [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 358
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 101/245 (41%), Gaps = 30/245 (12%)
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ +TE G TGKTQ L + LP GG +G +Y+D E TF R+
Sbjct: 134 GGIESRSITEAFGEFRTGKTQIGHTLCVTCQLPLEMGGGNGKAVYVDTEGTFRPERI--- 190
Query: 157 GASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEA 215
E F GM + + ILV + + L + + ++Q LLV+DS+ A
Sbjct: 191 --RPIAERF---GMDSNSVLDNILVARAYTHEHQAHLLSMVAAKMAEDQFSLLVVDSITA 245
Query: 216 LVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQK 272
L R A Q L+ +S + +AE I + +TNQV S
Sbjct: 246 LFRVDFSGRGELAERQQKLAKMLSQLIKIAEEFNIAVYITNQVVSDPGGASMF------- 298
Query: 273 MDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTI 331
+ + HI+ AHA T RL L G QR + SP+ P L ++I
Sbjct: 299 ---VADPKKPVGGHIL-------AHASTTRLSLRKGRGDQRVCKIFDSPSLPELECVYSI 348
Query: 332 NPSGI 336
+ GI
Sbjct: 349 SEQGI 353
>gi|149044063|gb|EDL97445.1| rCG27697 [Rattus norvegicus]
Length = 345
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 121/300 (40%), Gaps = 40/300 (13%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L +QR + L LD L GG+P +T L G + GKTQ L+L L
Sbjct: 64 TALHLFQQRESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGRSSAGKTQLALQLCLA 123
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRR---MIEMGASSFPEIFHSKGMAQEMAGRILVLQ 182
P YGGL+ G +YI E F S+R +IE ++ I +
Sbjct: 124 VQFPRQYGGLEAGAVYICTEDAFPSKRLWQLIEQLQELRTDVPGEVTQKIRFGNHIFIEH 183
Query: 183 PTSLSEFTESLEK-IKVSLLQNQVKLLVIDSMEA-LVPGVHEQ----RAPGQHPLSWHIS 236
+ E + K + + L + +L+V+DS+ A H Q RA H L +
Sbjct: 184 AADVDTLMECVSKRVPILLSRGMARLVVVDSIAAPFRCEFHLQASAVRAKHLHSLG---A 240
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+ L+ R P++ NQV D+ + + + LG WA
Sbjct: 241 ALQRLSSTFRSPVLCINQVTEMVEDQ---------------ESAGAWEERLSPALGITWA 285
Query: 297 HAVTIRLVLEA-----------KSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTE 345
+ + ++L+++ +S R + V +P P + +T++ G+ + GTE
Sbjct: 286 NQLLMQLMVDRIHEDSVTTGLPRSPARTLRVLFAPHLPLSSCCYTVSGEGVRGMA--GTE 343
>gi|134045413|ref|YP_001096899.1| DNA repair and recombination protein RadA [Methanococcus
maripaludis C5]
gi|166218761|sp|A4FWV5.1|RADA_METM5 RecName: Full=DNA repair and recombination protein RadA
gi|132663038|gb|ABO34684.1| DNA repair and recombination protein RadA [Methanococcus
maripaludis C5]
Length = 322
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 121/296 (40%), Gaps = 62/296 (20%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF----C 119
F++ + L++QR + L T K LD L GG+ VTE G G+GKTQ C
Sbjct: 64 FKSGVELLKQRQSV----WRLSTGSKELDTVLAGGLESQSVTEFAGMYGSGKTQIMHQTC 119
Query: 120 LKLSLLAALPAHYGGL------DGGVIYIDVESTFTSRRMIEM-------GASSFPEIFH 166
+ L + + A G+ + +YID E TF R+++M G + F
Sbjct: 120 VNLQMAEKIFADLEGVVEEEMENPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFV 179
Query: 167 SKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR-- 224
++ +M ++L F E +E + N +KL++IDS+ + R
Sbjct: 180 ARAYNSDM--QML---------FAEKIEDLIKG--GNNIKLVIIDSLTSTFRNEFTGRGK 226
Query: 225 -APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRT 281
A Q L H++ + LA+ ++VTNQV +P + F V +
Sbjct: 227 LAERQQKLGRHMATLNKLADLYNCIVLVTNQVAAKPDAF-------FGVAEQ-------- 271
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
A+ G HA T R L ++K +R + SP P F I GI
Sbjct: 272 -------AIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPHLPDSEAVFRITEKGI 320
>gi|209944582|gb|ACI96522.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKLERQYAHRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 DHPDIKLIVIDSL 178
>gi|386002409|ref|YP_005920708.1| DNA repair and recombination protein RadB [Methanosaeta
harundinacea 6Ac]
gi|357210465|gb|AET65085.1| DNA repair and recombination protein RadB [Methanosaeta
harundinacea 6Ac]
Length = 221
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 93/198 (46%), Gaps = 21/198 (10%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
L + +GLD L GG G++T++ G AGTGKT L+ AA+ A GL VI+I
Sbjct: 4 RLSSGCEGLDRLLGGGYEPGIITQIYGEAGTGKTTIVLQ----AAVGAVGRGLK--VIFI 57
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E F+ R ++ A+E+ +I+V +P +L + S+ K +
Sbjct: 58 DTEG-FSVERFRQIAGEG----------AKEIGAKIVVFEPLNLEQQHSSI-KDATKIAG 105
Query: 203 NQVKLLVIDSMEALVPGVHE--QRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260
+ LL++DS +L E P + L+ + + +A RIP+VVTNQV +
Sbjct: 106 KEFGLLILDSATSLYRAAFEGDDNRPVRRALAAQLGELQEMARRHRIPVVVTNQVYMEI- 164
Query: 261 DESCLYPFQVQKMDRILK 278
+ L P MD K
Sbjct: 165 ETGNLRPLGGMAMDHATK 182
>gi|209944612|gb|ACI96537.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKLERQYAHRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 DHPDIKLIVIDSL 178
>gi|410076230|ref|XP_003955697.1| hypothetical protein KAFR_0B02650 [Kazachstania africana CBS 2517]
gi|372462280|emb|CCF56562.1| hypothetical protein KAFR_0B02650 [Kazachstania africana CBS 2517]
Length = 335
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 127/325 (39%), Gaps = 45/325 (13%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGH 83
I T LS T L K+ + +V S+I+ F +A + + R
Sbjct: 41 IYTVNTVLSTTRRNLCKIKGLSEVKVEKIKEAASKIISVGFISATVQFDIRQKI----FA 96
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD+ L GG+ +TE+ G GKTQ L + A LP GG +G V Y+D
Sbjct: 97 LSTGSKQLDSILGGGIMTMSITEVFGEFRCGKTQMSHTLCVTAQLPKELGGGEGKVAYVD 156
Query: 144 VESTFTSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKI 196
E TF R+ ++ + + +++ + E E +E++
Sbjct: 157 TEGTFRPERIKQIAERYDLDPEACLDNVTYARALNSEHQ--------------MELVEQL 202
Query: 197 KVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTN 253
L +L++IDS+ A + R Q L+ H+ + LAE + I +TN
Sbjct: 203 GGELSSGDYRLIIIDSIMANFRVDYCGRGELNERQQKLNQHLFKLNRLAEEFNVAIFMTN 262
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QR 312
QV+ + +K V G AHA R++L G +R
Sbjct: 263 QVQSDPGASALFASADGRK----------------PVGGHVLAHASATRILLRKGRGEER 306
Query: 313 FMNVEKSPTSPPLAFSFTINPSGIS 337
++ SP P + I +GI+
Sbjct: 307 VAKLQDSPDMPERECVYIIGENGIT 331
>gi|292654282|ref|YP_003534179.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2]
gi|448293826|ref|ZP_21483929.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2]
gi|2500108|sp|Q48328.1|RADA_HALVD RecName: Full=DNA repair and recombination protein RadA
gi|1378032|gb|AAC44121.1| RadA [Haloferax volcanii]
gi|291370076|gb|ADE02303.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2]
gi|445569747|gb|ELY24318.1| DNA repair and recombination protein RadA [Haloferax volcanii DS2]
Length = 343
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 33/225 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T +++E+R G L ++ +D L GG+ +TE+ G G GK+Q +L+
Sbjct: 66 FETGSMVLERRQQI----GKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGL GG I+ID E TF R+ +M E + +EM G I +
Sbjct: 122 VNVQLPPEQGGLGGGCIFIDSEDTFRPERIDDMVRGLEDEALEATLDDREMEGSI-DDEE 180
Query: 184 TSLSEFTESLEKIKVSLLQNQ-----------------------VKLLVIDSMEALVPGV 220
T + + L+KI V+ N V+LL +DS+ A
Sbjct: 181 TIKALVDDFLDKIHVAKAFNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAE 240
Query: 221 HEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSH 260
+ R A Q L+ H+ + + + I+VTNQV P S+
Sbjct: 241 YVGRGELAERQQKLNKHLHDLMRIGDLFNTGILVTNQVSSNPDSY 285
>gi|395504462|ref|XP_003756568.1| PREDICTED: DNA repair protein XRCC3 [Sarcophilus harrisii]
Length = 346
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 150/354 (42%), Gaps = 50/354 (14%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
PK I + A+ + + K+ L L+ +L +L + + +V+ L VS + TAL +
Sbjct: 10 PKVITAVKKAK-LKSIKEVLHLSGPDLQRLTKLSIIDVQHLLKTVSLALRNNCVLTALQI 68
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+Q+ L L+ L GG+P ++ELVG + GKTQ L+LSL P
Sbjct: 69 YQQKEEFPVQHKKLGFGCSILNRLLRGGLPLVGISELVGQSSAGKTQIGLQLSLCVQYPY 128
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT 190
YGGL+ GVIYI E F +R+ ++ I + ++ G I+ S F
Sbjct: 129 EYGGLESGVIYICTEDVFPDKRLQQL-------IALQHQLRTDVPGEIIKKIKFGNSIFI 181
Query: 191 ESLEKIK-----------VSLLQNQVKLLVIDSMEALVP---GVHEQRAPGQHPLSWHIS 236
E + I + L + V+L++IDS+ AL G+ + ++ +
Sbjct: 182 EHVADIDTLFECIAKRAPILLSRGMVRLIIIDSIAALFRCEFGIQQSITKAKYLQTLGAK 241
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
L + F P++ NQ+ + DE L + +++ + LG W+
Sbjct: 242 LYQLSSGFQS-PVLCINQI-TSTVDERGLAGTNMDVLEK-----------VSPALGITWS 288
Query: 297 HAVTIRLVLEAKSGQ--------------RFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +RL++ S + R ++V +P P + +N G+
Sbjct: 289 NQLLMRLMVSRPSYEFSRDTDASTTGTVIRTLSVIFAPHLPQSCCHYIVNAEGV 342
>gi|414881528|tpg|DAA58659.1| TPA: hypothetical protein ZEAMMB73_968311 [Zea mays]
Length = 268
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 113/268 (42%), Gaps = 37/268 (13%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T L+ L GG+ VTE+ G G GKTQ ++L++ +P GGL G +YI
Sbjct: 10 HITTGSGDLNDILGGGIHCKEVTEIGGVPGVGKTQLGIQLAINVQIPVECGGLGGKAVYI 69
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV-LQPT---------SLSEFTES 192
E +F R+ ++ +I + E + + LQP + +TE
Sbjct: 70 --EGSFMVERVYQIAEGCIRDILEHFPHSHEKSSSVQKQLQPERFLADIYYFRICSYTEQ 127
Query: 193 LEKI----KVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248
+ I K V++++IDS+ E A LS + +A+ +
Sbjct: 128 IAVINYMEKFLREHKDVRIVIIDSVTFHFRQDFEDLALRTRVLSGLSLKLMKIAKTYNLA 187
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+V+ NQV + + S FQ + LG W+H+ T RL+L
Sbjct: 188 VVLLNQVTTKFTEGS----FQ-----------------LTLALGDSWSHSCTNRLILHWN 226
Query: 309 SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+R+ +++KSP+ P + + + GI
Sbjct: 227 GNERYAHLDKSPSLPVASAPYAVTGKGI 254
>gi|257387245|ref|YP_003177018.1| DNA repair and recombination protein RadA [Halomicrobium mukohataei
DSM 12286]
gi|257169552|gb|ACV47311.1| DNA repair and recombination protein RadA [Halomicrobium mukohataei
DSM 12286]
Length = 349
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 36/223 (16%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L + +D L GG+ +TE+ G G GK+Q ++S
Sbjct: 67 FETGATVLERREQI----GKLTWSVSEVDDLLGGGIETQSITEVYGEFGAGKSQVTHQIS 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHS----KGMAQEMAGRIL 179
+ LPA +GGL+G I++D E TF R+ +M ++ G+ +E AG
Sbjct: 123 VTVQLPAEHGGLEGSAIFVDSEDTFRPERIDQMVRGLDDDVLEDTMVLHGIVEE-AGDAD 181
Query: 180 VLQPTSLSEFTES-LEKIKVSLLQNQ-----------------------VKLLVIDSMEA 215
L ES L+KI V+ N V+LL +DS+ A
Sbjct: 182 AGDEELLEALVESVLDKIHVAKAFNSNHQILLAEKAQEIASESQDDDFPVRLLCVDSLTA 241
Query: 216 LVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
+ R A Q L+ H+ + + + + +VVTNQV
Sbjct: 242 HFRAEYVGRGELADRQQKLNKHLHDLMRVGDLNNTAVVVTNQV 284
>gi|320591998|gb|EFX04437.1| DNA repair protein rad51 [Grosmannia clavigera kw1407]
Length = 354
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 107/260 (41%), Gaps = 30/260 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 105 ITTGSKNLDTLLGGGIETGSITEIFGEFRTGKSQLCHTLAVTCQLPFDCGGGEGKCLYID 164
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + G++ +E+ I + + + L + +
Sbjct: 165 TEGTFRPSRVLAAA--------NRYGLSGEEVLDNIAIARAHNSDHQLALLRDAARMMAE 216
Query: 203 NQVKLLVIDSMEALVPGVHEQRAP---GQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ- 258
+ LLVIDS AL + R Q L + + S+ + I +V+TNQV Q
Sbjct: 217 TRFSLLVIDSATALYRTDYMGRGELNNRQMHLGQFLRQLQSMTDTYGIAVVITNQVVAQV 276
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVE 317
S ++ +K + G AHA T R+ L + ++ R +
Sbjct: 277 DGGPSSMFNPDPKK----------------PIGGNIIAHASTTRISLKKGRAETRIAKIY 320
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P F I GI
Sbjct: 321 DSPCLPESDCMFAITADGIG 340
>gi|320032013|gb|EFW13969.1| meiotic recombination protein dmc1 [Coccidioides posadasii str.
Silveira]
Length = 338
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 133/329 (40%), Gaps = 54/329 (16%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEH 79
+ + A T L++ +V++ +++ A+ C P F TA+ L QR
Sbjct: 44 VASVHGATRRTLLKIKGFSEVKVEKIKEAIQK-----CQPSASGFITAMELGHQRKRVVR 98
Query: 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGV 139
+ T K DA L GG ++E+ G GKTQ +S++A LP GG +G V
Sbjct: 99 I----STGSKQFDAILNGGFQSMSISEVYGEFRCGKTQLSHTMSVVAQLPRSMGGAEGKV 154
Query: 140 IYIDVESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES 192
YID E TF R+ ++ SS I +++ + E L L T EF
Sbjct: 155 AYIDTEGTFRPERVGQIAERFGVDPDSSLENIAYARALNSEHQ---LELLNTLSKEFA-- 209
Query: 193 LEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPI 249
+ +LL+IDS+ + R A Q L+ + + +AE + +
Sbjct: 210 ---------GGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCV 260
Query: 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS 309
++TNQV+ + +K V G AHA T R++L
Sbjct: 261 LMTNQVQSDPGASALFAGADGRK----------------PVGGHILAHASTTRVLLRKGR 304
Query: 310 G-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
G +R ++ SP P ++ I GI+
Sbjct: 305 GEERVAKIQDSPDCPEREATYIITNGGIN 333
>gi|209944570|gb|ACI96516.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M ++ ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKLERQYAHRVPEF-----KAHKMLQKVHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 DHPDIKLIVIDSL 178
>gi|221055874|ref|XP_002259075.1| recombinase rad51 [Plasmodium knowlesi strain H]
gi|193809146|emb|CAQ39848.1| recombinase rad51, putative [Plasmodium knowlesi strain H]
Length = 350
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 28/253 (11%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD+ L GG+ G +TEL G TGK+Q C L++ LP G +G ++ID E TF
Sbjct: 117 KQLDSLLKGGIETGGITELFGEFRTGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTF 176
Query: 149 TSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLL 208
R++ + A + H + I + + TE L + + LL
Sbjct: 177 RPERIVAI-AKRYG--LHP----TDCLNNIAYAKAYNCDHQTELLIDASAMMADARFALL 229
Query: 209 VIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
++DS AL + R A Q L + + +A+ + +++TNQV
Sbjct: 230 IVDSATALYRSEYIGRGELANRQSHLCRFLRGLQRIADIYGVAVIITNQV---------- 279
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPP 324
V K+D + + + + G AHA RL L G+ R + SP P
Sbjct: 280 ----VAKVDAM---NVFGGNDKIPIGGNIIAHASQTRLYLRKSRGESRICKIYDSPVLPE 332
Query: 325 LAFSFTINPSGIS 337
F I GI+
Sbjct: 333 AEAVFAITEGGIA 345
>gi|403416182|emb|CCM02882.1| predicted protein [Fibroporia radiculosa]
Length = 492
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 114/251 (45%), Gaps = 35/251 (13%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G++ E+VG + GKTQ L+LSL +P GGL G Y+ + +
Sbjct: 85 LDEVLDGGIRTGMLWEIVGESAAGKTQLALQLSLSVQIPHTLGGLSGTACYLTTSTALPT 144
Query: 151 RRMIEM---------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R+ E+ S I K E+ + VL T L +SL K +
Sbjct: 145 SRLTEIMERHPLLSRENCSLSAIHTIK--TPEIPILLHVLS-TRLPNLVDSLAKEQNP-- 199
Query: 202 QNQVKLLVIDSMEALVPGVHEQRAP---GQHPLSWHI----SLITSLAEFSRIPIVVTNQ 254
N VKLLVID++ L +H++ GQ S H+ +L+ +LA RI ++V N+
Sbjct: 200 -NPVKLLVIDALAELF-HMHDKTTADVLGQR--SKHLAEISTLLHTLASKYRIAVLVLNE 255
Query: 255 VRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV---------LGFHWAHAVTIRLVL 305
V+ + S P + D D+ R++ V LG WA+ V R++L
Sbjct: 256 VQDVFSNFS-YSPEENSSEDLAYHDQVRWFGRADGVPGEDRKEASLGLVWANQVNTRIML 314
Query: 306 EAKSGQRFMNV 316
+ +R ++V
Sbjct: 315 SRTTRERVLDV 325
>gi|448457837|ref|ZP_21595842.1| DNA repair and recombination protein RadA [Halorubrum lipolyticum
DSM 21995]
gi|445810138|gb|EMA60169.1| DNA repair and recombination protein RadA [Halorubrum lipolyticum
DSM 21995]
Length = 343
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 112/279 (40%), Gaps = 59/279 (21%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L ++ +D L GG+ +TE+ G G+GK+Q +++
Sbjct: 66 FETGATVLERREEI----GKLSWQIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP +GGLDGG I++D E TF R+ +M EI + EM R + P
Sbjct: 122 VNVQLPPEHGGLDGGCIFVDSEDTFRPERIDDMVRGLDDEI-----LVDEMERREIEGTP 176
Query: 184 TSLSEFTE----SLEKIKVSLLQNQ-----------------------VKLLVIDSMEAL 216
+ E L++I V+ N ++++ +DS+ A
Sbjct: 177 SDEEAMEELVGAFLDQIHVAKAFNSNHQILLAEKAKELAGEHEESEWPIRIVCVDSLTAH 236
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R A Q L+ H+ + + + I+VTNQV
Sbjct: 237 FRAEYVGRGELADRQQKLNKHLHDLMRIGDLFNTAILVTNQV--------------ASNP 282
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQR 312
D D T+ A+ G HA T R+ L G +
Sbjct: 283 DSYFGDPTQ------AIGGNILGHASTFRMYLRKSKGDK 315
>gi|149239438|ref|XP_001525595.1| meiotic recombination protein DMC1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451088|gb|EDK45344.1| meiotic recombination protein DMC1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 220
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 96/244 (39%), Gaps = 41/244 (16%)
Query: 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA----- 158
+TE+ G GKTQ C L + A LP GG +G V YID E TF R+ +
Sbjct: 3 ITEVFGEFRCGKTQLCHTLCVAAQLPKDLGGGEGRVAYIDTEGTFRPERIRAIANRFGVD 62
Query: 159 --SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ I +++ + E E +E++ L + LL++DS+ A
Sbjct: 63 PDNCLENISYARALNSEHQ--------------IELVEQLGNELAEGTYSLLIVDSILAC 108
Query: 217 VPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R Q L+ H+S +T LAE I + +TNQV+ S +K
Sbjct: 109 FRVDYSGRGELNERQQKLNQHLSHLTRLAEDYNIAVFLTNQVQSDPGASSLFAAADGRK- 167
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTIN 332
V G AHA R++L G +R ++ SP P + I
Sbjct: 168 ---------------PVGGHVLAHASATRILLRKGRGEERVGKLQDSPNMPEKECVYVIG 212
Query: 333 PSGI 336
GI
Sbjct: 213 EGGI 216
>gi|448629900|ref|ZP_21672795.1| DNA repair and recombination protein RadA [Haloarcula vallismortis
ATCC 29715]
gi|445757321|gb|EMA08676.1| DNA repair and recombination protein RadA [Haloarcula vallismortis
ATCC 29715]
Length = 349
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 98/226 (43%), Gaps = 42/226 (18%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L + +D L GGV +TE+ G G GK+Q +L+
Sbjct: 67 FETGSTVLERREQI----GKLSWGVDEVDELLGGGVETQSITEVYGEFGAGKSQVTHQLA 122
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHS----KGMAQEMAGRIL 179
+ LPA +GGL+G I++D E TF R+ +M E+ G+ +E A
Sbjct: 123 VNVQLPAEHGGLEGSAIFVDSEDTFRPERIEQMVKGLDDEVLADTMTLHGIVEEEAD--- 179
Query: 180 VLQPTS---LSEFTES-LEKIKVSLLQNQ-----------------------VKLLVIDS 212
PT L + S LEKI V+ N V+LL +DS
Sbjct: 180 -ADPTDEDLLDDLVASVLEKIHVAKAFNSNHQILLAEKAQEIASESQDEEFPVRLLAVDS 238
Query: 213 MEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
+ A + R A Q L+ H+ + + + + +VVTNQV
Sbjct: 239 LTAHFRAEYVGRGELADRQQKLNKHLHDLMRVGDLNNTAVVVTNQV 284
>gi|380027258|ref|XP_003697346.1| PREDICTED: DNA repair protein XRCC3-like [Apis florea]
Length = 254
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 108/267 (40%), Gaps = 42/267 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T D L GG+ +T++ G A TGKTQ L+L L LP GGL G IYI
Sbjct: 18 LTTGCLKFDTLLQGGITNRGITQIYGAASTGKTQLALQLCLTVQLPKTDGGLAAGAIYIC 77
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ- 202
ES F SRR+ E+ EI G+ ++ E ++E++++ LL
Sbjct: 78 TESIFPSRRLQELIQK--LEITKKHGINGDLV----------FVEHISTIEELEICLLHR 125
Query: 203 -------NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLI-TSLAEFSR--IPIVVT 252
++ L+VIDS+ A P E + + + +I L + + I +V
Sbjct: 126 IPTLISVQKIGLIVIDSIAA--PYRVEDWKDKSNNRAKSLRIIGQQLHKLCKNNICVVCI 183
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQR 312
NQV + +L D ++ LG W+ +T + R
Sbjct: 184 NQVTTDVYSN-------------VLNDNL----NVRPTLGTTWSSMITTSIQFYRIDSLR 226
Query: 313 FMNVEKSPTSPPLAFSFTINPSGISLL 339
+ ++ S P L SF I GI L
Sbjct: 227 YACIKLSSNLPELIISFEIQGCGIKAL 253
>gi|209944564|gb|ACI96513.1| spindle D [Drosophila simulans]
Length = 212
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 111 HPDRLMGLALKLEKQYAPRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 166 DHPDIKLIVIDSL 178
>gi|183397237|gb|ACC62173.1| Dmc1 [Penaeus monodon]
Length = 341
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 118/282 (41%), Gaps = 37/282 (13%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F TAL++ E+R L + T LDA L GG+ +TE+ G TGKTQ L
Sbjct: 85 FVTALVMCEKR----RLVFRVSTGSAELDALLGGGIESMAITEVFGEFRTGKTQISHTLC 140
Query: 124 LLAALPAHYGGLDGG-VIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVL 181
+ A +P G GG VI+ID E+TF R+ I + Q+ +L
Sbjct: 141 VTAQIPNEAGTYSGGKVIFIDTENTFRPDRL--------RPIADRYNLEQDAVLDNVLYT 192
Query: 182 QPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHIS 236
+ + E L+ + + KLL++DS+ AL R A Q L+ ++S
Sbjct: 193 RAFTSEHQLEILDHVAAQFHEEPGIFKLLIVDSVMALFRVDFSGRGELADRQQKLAQYMS 252
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+ ++E + + +TNQ+ + D FQ I HI+ A
Sbjct: 253 RLQKISEEYNVSVFITNQM---TADPGAAMSFQADPKKPI-------GGHIL-------A 295
Query: 297 HAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
HA T R+ L G+ R + SP P +F I GI+
Sbjct: 296 HAPTTRVCLRKGRGETRIAKIYDSPELPENECTFAITAGGIA 337
>gi|448503151|ref|ZP_21612918.1| DNA repair and recombination protein RadA [Halorubrum coriense DSM
10284]
gi|445693160|gb|ELZ45320.1| DNA repair and recombination protein RadA [Halorubrum coriense DSM
10284]
Length = 343
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 115/279 (41%), Gaps = 59/279 (21%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R G L ++ +D L GG+ +TE+ G G+GK+Q +++
Sbjct: 66 FETGATVLERREEI----GKLSWQIDEVDDLLGGGIETQSITEVYGEFGSGKSQVTHQMA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ L GGLDGG I++D E TF R+ +M EI +A EM R + P
Sbjct: 122 VNVQLEPENGGLDGGCIFVDSEDTFRPERIDDMVRGLDDEI-----LADEMERREIEGTP 176
Query: 184 T---SLSEFTES-LEKIKVSLLQNQ-----------------------VKLLVIDSMEAL 216
+ ++ E E+ L++I V+ N ++++ +DS+ A
Sbjct: 177 SDKEAMEELVEAFLDQIHVAKAFNSNHQILLAEKAKELAGEHEETEWPIRIVCVDSLTAH 236
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R A Q L+ H+ + + + I+VTNQV
Sbjct: 237 FRAEYVGRGELADRQQKLNKHLHDLMRIGDLFNTAILVTNQV--------------ASNP 282
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQR 312
D D T+ A+ G HA T R+ L G +
Sbjct: 283 DSYFGDPTQ------AIGGNILGHASTFRMYLRKSKGDK 315
>gi|21805949|gb|AAM76793.1| Dmc1 protein type A [Oryza sativa Indica Group]
Length = 344
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 106/260 (40%), Gaps = 33/260 (12%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T + LD L GG+ +TE G +GKTQ L + A LP H G +G V YI
Sbjct: 107 RITTGSQALDKLLGGGIETLCITEAFGEFRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYI 166
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
D E TF R++ + A F GM A + I+ + + L + +
Sbjct: 167 DTEGTFRPERIVPI-AERF-------GMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMA 218
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+ +LL++DS+ AL R A Q L+ +S +T +AE + + +TNQV
Sbjct: 219 EEPFRLLIVDSVIALFRVDFSGRGELAKRQQKLAQMLSRLTKIAEEFNVAVYITNQVIAD 278
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH-WAHAVTIRLVLEAKSG-QRFMNV 316
+ + + G H AHA TIRL+L G QR +
Sbjct: 279 PGG-------------------GMFITDLKKPAGGHVLAHAATIRLMLRKGKGEQRVCKI 319
Query: 317 EKSPTSPPLAFSFTINPSGI 336
+P P F + GI
Sbjct: 320 FDAPNLPEGEAVFQVTSGGI 339
>gi|345308874|ref|XP_001519391.2| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Ornithorhynchus anatinus]
Length = 296
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 119/290 (41%), Gaps = 35/290 (12%)
Query: 54 ALVSEIVCPP-FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAG 112
+VS +V P F TA E+R H+ T + D L GG+ +TE G
Sbjct: 30 GIVSTLVKEPGFLTAFEYSEKRKMV----FHVTTGSQEFDKLLGGGIESMAITEAFGEFR 85
Query: 113 TGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ 172
TGKTQ L + A LP G G +I+ID E+TF R+ ++ A F + H
Sbjct: 86 TGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADRF-NLDHDA---- 139
Query: 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APG 227
+ +L + + E L+ + + KLL+IDS+ AL R A
Sbjct: 140 -VLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAER 198
Query: 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHI 287
Q L+ +S + ++E + + VTNQ+ + D FQ I HI
Sbjct: 199 QQKLAQMLSRLQKISEEYNVAVFVTNQM---TSDPGATMTFQADPKKPI-------GGHI 248
Query: 288 VAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGI 336
+ AHA T R+ L G+ R + SP P +F I GI
Sbjct: 249 L-------AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGI 291
>gi|115487302|ref|NP_001066138.1| Os12g0143800 [Oryza sativa Japonica Group]
gi|14669854|dbj|BAB62026.1| RiLIM15A [Oryza sativa]
gi|18700483|dbj|BAB85213.1| DMC1 [Oryza sativa Japonica Group]
gi|113648645|dbj|BAF29157.1| Os12g0143800 [Oryza sativa Japonica Group]
gi|215766778|dbj|BAG99006.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 344
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 106/260 (40%), Gaps = 33/260 (12%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T + LD L GG+ +TE G +GKTQ L + A LP H G +G V YI
Sbjct: 107 RITTGSQALDKLLGGGIETLCITEAFGEFRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYI 166
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
D E TF R++ + A F GM A + I+ + + L + +
Sbjct: 167 DTEGTFRPERIVPI-AERF-------GMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMA 218
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+ +LL++DS+ AL R A Q L+ +S +T +AE + + +TNQV
Sbjct: 219 EEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIAD 278
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH-WAHAVTIRLVLEAKSG-QRFMNV 316
+ + + G H AHA TIRL+L G QR +
Sbjct: 279 PGG-------------------GMFITDLKKPAGGHVLAHAATIRLMLRKGKGEQRVCKI 319
Query: 317 EKSPTSPPLAFSFTINPSGI 336
+P P F + GI
Sbjct: 320 FDAPNLPEGEAVFQVTSGGI 339
>gi|66472867|ref|NP_001018618.1| meiotic recombination protein DMC1/LIM15 homolog [Danio rerio]
gi|63852092|dbj|BAD98462.1| RecA homolog Dmc1 [Danio rerio]
Length = 342
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 111/265 (41%), Gaps = 30/265 (11%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T D L GGV +TE G TGKTQ L + A LP YG G VI+I
Sbjct: 102 HITTGSLEFDKLLGGGVESMAITEAFGEFRTGKTQLSHTLCVTAQLPGEYGYTGGKVIFI 161
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E+TF R+ ++ A F + H + + +L + + E L+ + +
Sbjct: 162 DTENTFRPERLKDI-ADRF-NVDH-----EAVLDNVLYARAYTSEHQMELLDFVAAKFHE 214
Query: 203 NQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257
KLL+IDS+ AL R A Q L+ +S + ++E + + VTNQ+
Sbjct: 215 EGGVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM-- 272
Query: 258 QSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNV 316
+ D FQ I HI+ AHA T R+ L + ++ R +
Sbjct: 273 -TADPGAGMTFQADPKKPI-------GGHIL-------AHASTTRISLRKGRAELRIAKI 317
Query: 317 EKSPTSPPLAFSFTINPSGISLLTD 341
SP P +F I GI+ D
Sbjct: 318 FDSPHMPENEATFAITAGGITDAKD 342
>gi|209944562|gb|ACI96512.1| spindle D [Drosophila simulans]
Length = 205
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 44 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 103
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ L + ++ L+
Sbjct: 104 HPDRLMGLALKLERQYAPRVPEF-----KAHKMLQKIHYVRCPKLDQLMATVLSCHRHLV 158
Query: 202 -QNQVKLLVIDSM 213
+ +KL+VIDS+
Sbjct: 159 DHSDIKLIVIDSL 171
>gi|345561224|gb|EGX44320.1| hypothetical protein AOL_s00193g48 [Arthrobotrys oligospora ATCC
24927]
Length = 343
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 139/330 (42%), Gaps = 35/330 (10%)
Query: 14 SIANIFAARNITTAK--DALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLM 71
IA + AA T A A+ T ++ L ++++ +++ A++ ++ F TA
Sbjct: 34 DIAKLRAAGYWTVASVHSAMRKTLGKIKGLSEIKVDKIKDAVSKINP-SGSTFVTASEYG 92
Query: 72 EQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAH 131
+QR + T K LDA L GG ++E+ G GKTQ L + LP
Sbjct: 93 QQRKRVIRI----STGSKNLDAILGGGFTTMSISEVFGEFRCGKTQMGHTLCVTCQLPKD 148
Query: 132 YGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTE 191
GG G Y+D E TF R+ + E F G A IL + + E
Sbjct: 149 MGGAAGKAAYVDTEGTFRPDRI-----RAISERFGVDGDA--CLENILYARAVNSEVQME 201
Query: 192 SLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIP 248
++K+ + +LLV+DS+ A + R + Q L ++ +T++AE I
Sbjct: 202 LIQKLAEPFASGEYRLLVVDSIMACFRVDYSGRGELSERQQKLGQMLARLTTMAEEFNIA 261
Query: 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308
+ +TNQV+ S L+ D + H++ AHA R++L
Sbjct: 262 VYMTNQVQSDP-GASALFAG---------ADGRKPGGHVL-------AHASATRVLLRKG 304
Query: 309 SG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
G +R ++ SP P ++ I+ GI+
Sbjct: 305 RGEERVAKIQDSPDCPEREATYIISNGGIA 334
>gi|392867439|gb|EJB11331.1| meiotic recombinase Dmc1 [Coccidioides immitis RS]
Length = 338
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 132/329 (40%), Gaps = 54/329 (16%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEH 79
+ + A T L++ +V++ +++ A+ C P F TA+ L QR
Sbjct: 44 VASVHGATRRTLLKIKGFSEVKVEKIKEAIQK-----CQPSASGFITAMELGHQRKRVVR 98
Query: 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGV 139
+ T K DA L GG ++E+ G GKTQ +S++A LP GG +G V
Sbjct: 99 I----STGSKQFDAILNGGFQSMSISEVYGEFRCGKTQLSHTMSVVAQLPRSMGGAEGKV 154
Query: 140 IYIDVESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES 192
YID E TF R+ ++ SS I +++ + E L L T EF
Sbjct: 155 AYIDTEGTFRPERVGQIAERFGVDPDSSLENIAYARALNSEHQ---LELLNTLSKEFA-- 209
Query: 193 LEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPI 249
+ +LL+IDS+ + R A Q L+ + + +AE + +
Sbjct: 210 ---------GGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCV 260
Query: 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS 309
++TNQV+ + +K V G AHA T R+ L
Sbjct: 261 LMTNQVQSDPGASALFAGADGRK----------------PVGGHILAHASTTRVFLRKGR 304
Query: 310 G-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
G +R ++ SP P ++ I GI+
Sbjct: 305 GEERVAKIQDSPDCPEREATYIITNGGIN 333
>gi|21805940|gb|AAM76791.1| Dmc1 protein type A [Oryza sativa Japonica Group]
Length = 344
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 106/260 (40%), Gaps = 33/260 (12%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T + LD L GG+ +TE G +GKTQ L + A LP H G +G V YI
Sbjct: 107 RITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVSAQLPIHMHGGNGKVAYI 166
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
D E TF R++ + A F GM A + I+ + + L + +
Sbjct: 167 DTEGTFRPERIVPI-AERF-------GMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMA 218
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+ +LL++DS+ AL R A Q L+ +S +T +AE + + +TNQV
Sbjct: 219 EEPFRLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIAD 278
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH-WAHAVTIRLVLEAKSG-QRFMNV 316
+ + + G H AHA TIRL+L G QR +
Sbjct: 279 PGG-------------------GMFITDLKKPAGGHVLAHAATIRLMLRKGKGEQRVCKI 319
Query: 317 EKSPTSPPLAFSFTINPSGI 336
+P P F + GI
Sbjct: 320 FDAPNLPEGEAVFQVTSGGI 339
>gi|50311197|ref|XP_455622.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644758|emb|CAG98330.1| KLLA0F11957p [Kluyveromyces lactis]
Length = 329
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 126/326 (38%), Gaps = 49/326 (15%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGH 83
I T LS T L K+ + +V ++I+ F A L + R A +
Sbjct: 35 IFTVNTCLSTTRRNLCKVRGLSEVKVEKIKEAANKIITIGFIPATLQWQIRQAVMSI--- 91
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
T K D+ L GG+ +TE+ G GKTQ L + A LP G +G V YID
Sbjct: 92 -STGSKQFDSVLGGGIMTMSITEVFGEFRCGKTQLSHTLCVTAQLPKELNGPEGKVAYID 150
Query: 144 VESTFTSRRM--IEMGASSFPE-----IFHSKGMAQE--MAGRILVLQPTSLSEFTESLE 194
E TF R+ I G PE I +++ + E M + + S E+
Sbjct: 151 TEGTFRPERIKQIAQGYDLDPEVCLENISYARALNSEHQMELLEQLGEELSSGEY----- 205
Query: 195 KIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVV 251
+LL++DS+ A + R Q L+ H+S + +AE + I + +
Sbjct: 206 -----------RLLIVDSIMANFRVDYSGRGELNERQQKLNQHLSRLNRIAEENNIAVFM 254
Query: 252 TNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG- 310
TNQV+ + +K V G AHA R++L G
Sbjct: 255 TNQVQSDPGASALFASADGRK----------------PVGGHVLAHASATRILLRKGRGD 298
Query: 311 QRFMNVEKSPTSPPLAFSFTINPSGI 336
+R ++ SP P + I GI
Sbjct: 299 ERVAKLQDSPDMPEKECVYVIGERGI 324
>gi|354545816|emb|CCE42544.1| hypothetical protein CPAR2_201870 [Candida parapsilosis]
Length = 324
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 98/250 (39%), Gaps = 27/250 (10%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
D L GGV +TE+ G GKTQ C L + A L GG +G V +ID E TF
Sbjct: 94 FDEMLGGGVTSMSITEVFGEYRCGKTQLCHTLCVAAQLTKSLGGAEGKVAFIDTEGTFRP 153
Query: 151 RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVI 210
R+ + E F M I + + E +E++ L +LLVI
Sbjct: 154 ERI-----KAIAERFDVDPMV--CLENISYARALNSEHQIELVEQLGSELATGSYRLLVI 206
Query: 211 DSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYP 267
DS+ A + R Q L+ H++ +T +AE + + +TNQV+ S
Sbjct: 207 DSILACFRVDYSGRGELNEKQQKLNQHLAYLTRVAEDYNVAVFLTNQVQSDPGASSLFAA 266
Query: 268 FQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLA 326
+K V G AHA R++L G +R + SP P
Sbjct: 267 ADGRK----------------PVGGHVLAHASATRILLRKGRGDERVGKLLDSPNMPESE 310
Query: 327 FSFTINPSGI 336
+ I GI
Sbjct: 311 CVYVIGEGGI 320
>gi|408404276|ref|YP_006862259.1| DNA repair and recombination protein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364872|gb|AFU58602.1| DNA repair and recombination protein [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 335
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 122/290 (42%), Gaps = 36/290 (12%)
Query: 57 SEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKT 116
S ++ F TA + +E+R + T K LD L GGV +TE G G+GK+
Sbjct: 64 SGVLDNEFTTADVELEKRKSLL----RCSTGAKALDELLLGGVETQAITEFYGEFGSGKS 119
Query: 117 QFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMA 175
Q C L + A P GGL GGVI ID E TF R+ +I ++G+ +E+
Sbjct: 120 QICHTLCVTAQQPVEEGGLGGGVILIDTEGTFRPERV--------DQIARARGLNPEEIL 171
Query: 176 GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLS 232
R+ + + + S ++ + + + K+++IDS+ +L R A Q L+
Sbjct: 172 KRVAICKAYNSSHLELIVKSMGKYIDDFKAKMIIIDSIISLHRAEFSGRGTLADRQQRLN 231
Query: 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLG 292
+ + +AE I I+VTNQV+ D D T+ G
Sbjct: 232 SIMHKLVRIAEIYNIAIIVTNQVQSTP--------------DTFFGDPTK------PAGG 271
Query: 293 FHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDD 342
HA T R+ L R + SP P FT+N G+ + D
Sbjct: 272 NVIGHASTYRVYLRKAGNDRIAKIIDSPYHPYSDVRFTVNEKGVDDIESD 321
>gi|443921989|gb|ELU41506.1| Rah1 [Rhizoctonia solani AG-1 IA]
Length = 363
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 106/259 (40%), Gaps = 45/259 (17%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GG+ G +TEL G TGK+Q C L++ LP++ GG +G +YID E F
Sbjct: 133 LDTLLGGGIETGSITELFGEFRTGKSQLCHTLAVTCQLPSNMGGGEGKCMYIDTEGGFRP 192
Query: 151 RRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
R++++ G + +++ + +LV Q ++
Sbjct: 193 VRLLQVAERLGLDGEEVLQNVAYARAYNADHQNALLV-QASAFGAC-------------- 237
Query: 204 QVKLLVIDSMEALV----PGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LL++DS L G E A H L + ++ LA+ I +V+TNQV S
Sbjct: 238 RFALLIVDSCTNLYRTDFSGRGELSARQAH-LGKFLRVLQRLADEFGIAVVITNQV--MS 294
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
++ P Y + + G AHA T RL L+ G R +
Sbjct: 295 SPDAAAGP---------------YAGGVKPIGGNIIAHASTTRLQLKKGRGNTRICKIYD 339
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP P F I+ GI
Sbjct: 340 SPCLPESEAQFAIHSYGIG 358
>gi|171680227|ref|XP_001905059.1| hypothetical protein [Podospora anserina S mat+]
gi|170939740|emb|CAP64966.1| unnamed protein product [Podospora anserina S mat+]
Length = 348
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 132/307 (42%), Gaps = 36/307 (11%)
Query: 38 LMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCG 97
L ++ + + + L S++V F TA + ++R +E + + T K LD L G
Sbjct: 61 LEQIKGISEQKAQKILTEASKLVPMGFTTATEMHQRR--SELI--SITTGSKNLDTLLAG 116
Query: 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157
G+ G VTE+ G TGK+Q C L++ LP GG +G +YID E TF R++
Sbjct: 117 GIETGSVTEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCMYIDTEGTFRPVRLL--- 173
Query: 158 ASSFPEIFHSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ + G++ +E+ + + + + L + + + + LL++DS +L
Sbjct: 174 -----AVANRYGLSGEEVLDNVAYARAYNSDHQLQLLNQAAAMMCETRFSLLIVDSATSL 228
Query: 217 VP----GVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-SHDESCLYPFQVQ 271
G E + H L+ + + LA+ I +V+TNQV Q S ++ +
Sbjct: 229 YRTDFLGRGELSSRQTH-LAKFMRTLQRLADEFGIAVVITNQVVAQVDGGPSAMFNPDPK 287
Query: 272 KMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFT 330
K + G AHA T R+ L + ++ R + SP P F
Sbjct: 288 K----------------PIGGNIIAHASTTRISLKKGRAETRIAKIYDSPCLPESDCLFA 331
Query: 331 INPSGIS 337
I GI
Sbjct: 332 IGEDGIG 338
>gi|308159744|gb|EFO62265.1| DNA repair protein RAD51 [Giardia lamblia P15]
Length = 389
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 115/287 (40%), Gaps = 54/287 (18%)
Query: 62 PPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLK 121
P F + + +E+R + T LDA L GG+ +TE+ G +GKTQ C
Sbjct: 140 PGFMSGVAALERRQRIRRI----STGCSDLDALLGGGIESMAITEVFGEFRSGKTQLCHT 195
Query: 122 LSLLAALPAHYGGLDGG-VIYIDVESTFTSRRMIEMG-------ASSFPEIFHSKGMAQE 173
+++ A LDG V Y+D E TF ++ + ++ +I +++ E
Sbjct: 196 IAVTAQ-------LDGSRVAYLDTEGTFRPEKIGPIAERYKLDPTTALSKIAYARAYTHE 248
Query: 174 MAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHP 230
+L +SE + LL++DS+ AL R A Q
Sbjct: 249 QQIELLAAAAEQMSE--------------KKFALLIVDSLTALFRVDFTGRGELADRQQK 294
Query: 231 LSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
L H++ + LA+ I I VTNQV Q D + ++ +K +
Sbjct: 295 LGQHLASLAKLADEFNIAIFVTNQVMAQV-DGAAMFTADPKK----------------PI 337
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G AHA T RL L + + R + SP+ P +F + G+
Sbjct: 338 GGHILAHASTTRLYLRKGRGNNRVAKIYDSPSLPEAEATFAVGEQGV 384
>gi|190338308|gb|AAI63218.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination (yeast) [Danio rerio]
Length = 342
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 109/264 (41%), Gaps = 28/264 (10%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T D L GGV +TE G TGKTQ L + A LP YG G VI+I
Sbjct: 102 HITTGSLEFDKLLGGGVESMAITEAFGEFRTGKTQLSHTLCVTAQLPGEYGYTGGKVIFI 161
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQ-PTSLSEFTESLEKIKVSLL 201
D E+TF R+ ++ A F + H + + R + L +F + K
Sbjct: 162 DTENTFRPERLKDI-ADRF-NVDHDAVLDNVLYARAYTSEHQMELLDFVAA----KFHEE 215
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
KLL+IDS+ AL R A Q L+ +S + ++E + + VTNQ+
Sbjct: 216 GGVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM--- 272
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVE 317
+ D FQ I HI+ AHA T R+ L + ++ R +
Sbjct: 273 TADPGAGMTFQADPKKPI-------GGHIL-------AHASTTRISLRKGRAELRIAKIF 318
Query: 318 KSPTSPPLAFSFTINPSGISLLTD 341
SP P +F I GI+ D
Sbjct: 319 DSPHMPENEATFAITAGGITDAKD 342
>gi|331242297|ref|XP_003333795.1| hypothetical protein PGTG_15555 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312785|gb|EFP89376.1| hypothetical protein PGTG_15555 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 514
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 18/200 (9%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQT--ALLLMEQRAATEHLG 81
TTA + + +T L + EV+ +SEI P T A L+ + LG
Sbjct: 37 FTTASEIILITPESLKSQTGLSSEEVQDVYRRLSEICSPQVSTVSARLIEGSKQGFITLG 96
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
R+ G + GG+P G++TE+ G + GKT L+LSL LP GGL GG IY
Sbjct: 97 SADLDRVFG---SPQGGIPTGLLTEIAGESACGKTCLALQLSLNVQLPHSLGGLLGGCIY 153
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
+ ES F +RR+ EM A G+ + + L P + L+ ++V L
Sbjct: 154 LCTESAFPTRRLHEMAA----------GLCARVKNILDSLDPETQELI---LQDLRVESL 200
Query: 202 QNQVKLLVIDSMEALVPGVH 221
V L + +AL+ +H
Sbjct: 201 MENVHLTRVHDPQALIHTIH 220
>gi|211904093|ref|NP_001129988.1| DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous
recombination [Oryzias latipes]
gi|199652322|gb|ACH91672.1| DMC1 [Oryzias latipes]
Length = 342
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 128/320 (40%), Gaps = 34/320 (10%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGH 83
I T K T L + + ++V +++ FQTA +R H
Sbjct: 47 ICTVKGIQMTTRKALCNIKGLSEAKVEKIKEAAGKVLNVGFQTAFEYSSKRKQV----FH 102
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + D L GGV +TE G TGKTQ L + A LP G G VI+ID
Sbjct: 103 ISTGSQEFDKLLGGGVESMAITEAFGEFRTGKTQLSHTLCVTAQLPGENGYSGGKVIFID 162
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E+TF R+ ++ A F + H + +L + + E L+ + +
Sbjct: 163 TENTFRPDRLRDI-ADRF-NVDHGA-----VLDNVLYARAYTSEHQMELLDFVAAKFHEE 215
Query: 204 Q--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
KLL+IDS+ AL R A Q L+ +S + ++E + + VTNQ+
Sbjct: 216 GGVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM--- 272
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
+ D FQ I HI+ AHA T R+ L G+ R +
Sbjct: 273 TADPGAGMTFQADPKKPI-------GGHIL-------AHASTTRISLRKGRGEMRIAKIF 318
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P +F I+ G++
Sbjct: 319 DSPVMPENEATFAISAGGVT 338
>gi|296811726|ref|XP_002846201.1| meiotic recombination protein dmc1 [Arthroderma otae CBS 113480]
gi|238843589|gb|EEQ33251.1| meiotic recombination protein dmc1 [Arthroderma otae CBS 113480]
Length = 342
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 132/329 (40%), Gaps = 54/329 (16%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEH 79
I + A T L++ +V++ +++ A+ C P F TA+ L QR
Sbjct: 48 IQSVHGATRKTLLKIKGFSEVKVEKIKEAIQK-----CQPSASGFITAMELGHQRKRVVK 102
Query: 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGV 139
+ T K D+ L GG ++E+ G GKTQ +S++A LP GG +G
Sbjct: 103 I----STGSKQFDSILGGGFQSMSISEVYGEFRCGKTQLSHTMSVIAQLPKDMGGAEGKA 158
Query: 140 IYIDVESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES 192
YID E TF R+ ++ S+ I +++ + E L L T EF
Sbjct: 159 AYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQ---LELLNTLAKEFASG 215
Query: 193 LEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPI 249
+ +LL+IDS+ + R A Q L+ + + +AE + +
Sbjct: 216 -----------EYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCV 264
Query: 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS 309
++TNQV+ + +K V G AHA T R++L
Sbjct: 265 LMTNQVQSDPGASALFAGADGRK----------------PVGGHILAHASTTRVLLRKGR 308
Query: 310 G-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
G +R ++ SP P ++ I GI+
Sbjct: 309 GDERVAKIQDSPDCPEREATYVITNGGIN 337
>gi|126290417|ref|XP_001373207.1| PREDICTED: DNA repair protein XRCC3-like [Monodelphis domestica]
Length = 379
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 160/377 (42%), Gaps = 69/377 (18%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
PK IA I A+ + + K+ L + +L +L + +V+ L VS + TAL +
Sbjct: 10 PKVIAAIKKAK-LKSIKEVLHFSGPDLQRLTKLSSIDVQHLLKTVSLALRNNCVLTALHI 68
Query: 71 MEQR----AATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126
+ + A + LG P + L GG+P +TELVG + GKTQ L+LSL
Sbjct: 69 YQHKEEFPAQHKKLGFGCPV----FNRLLQGGLPLVGITELVGQSSAGKTQIGLQLSLCV 124
Query: 127 ALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILV 180
P YGGL+ G IYI E F +R+ ++ A + P+ K + I +
Sbjct: 125 QYPYEYGGLESGAIYICTEDVFPDKRLQQLIALQHQLRTDVPQDVIKK---IKFGNSIFI 181
Query: 181 LQPTSLSEFTESLEKIKVSLL-QNQVKLLVIDSMEALVP---GVHEQRAPGQHPLSWHIS 236
+ E + K LL + V+L++IDS+ AL G+ QH ++
Sbjct: 182 EHAADIDALFECVTKRAPILLSRGMVRLIIIDSIAALFRCEFGI-------QHSITKAKY 234
Query: 237 LITSLAEFSRI------PIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
L T A+ ++ P++ NQV + DE L + + R +
Sbjct: 235 LQTLGAKLHQLSSGFQSPVLCINQV-TDTVDERGLAGTNLDVLAR-----------VSPA 282
Query: 291 LGFHWAHAVTIRLVLE------------AKSGQ--RFMNVEKSPTSPPLAFSFTINPSGI 336
LG W++ + +RL++ A +G R ++V +P P +T++ G+
Sbjct: 283 LGITWSNQLLMRLMVSRLARELSRDTHAAATGTVVRTLSVIFAPHLPQSCCHYTVSAEGV 342
Query: 337 -------SLLTDDGTEM 346
S DGT++
Sbjct: 343 KGADVGYSSCDADGTDV 359
>gi|315043933|ref|XP_003171342.1| meiotic recombinase Dmc1 [Arthroderma gypseum CBS 118893]
gi|311343685|gb|EFR02888.1| meiotic recombinase Dmc1 [Arthroderma gypseum CBS 118893]
Length = 337
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 132/329 (40%), Gaps = 54/329 (16%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEH 79
+ + A T L++ +V++ +++ A+ C P F TA+ L QR
Sbjct: 43 VASVHGATRKTLLKIKGFSEVKVEKIKEAIQK-----CQPSASGFITAMELGHQRKRVVK 97
Query: 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGV 139
+ T K D+ L GG ++E+ G GKTQ +S++A LP GG +G
Sbjct: 98 I----STGSKQFDSILGGGFQSMSISEVYGEFRCGKTQLSHTMSVIAQLPKDMGGAEGKA 153
Query: 140 IYIDVESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES 192
YID E TF R+ ++ S+ I +++ + E L L T EF
Sbjct: 154 AYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQ---LELLNTLAKEFASG 210
Query: 193 LEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPI 249
+ +LL+IDS+ + R A Q L+ + + +AE + +
Sbjct: 211 -----------EYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCV 259
Query: 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS 309
++TNQV+ + +K V G AHA T R++L
Sbjct: 260 LMTNQVQSDPGASALFAGADGRK----------------PVGGHILAHASTTRVLLRKGR 303
Query: 310 G-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
G +R V+ SP P ++ I GI+
Sbjct: 304 GDERVAKVQDSPDCPEREATYVITNGGIN 332
>gi|226292806|gb|EEH48226.1| meiotic recombination protein DMC1 [Paracoccidioides brasiliensis
Pb18]
Length = 632
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 132/323 (40%), Gaps = 54/323 (16%)
Query: 30 ALSLTELELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEHLGGHLP 85
A T L++ +V++ +++ A+ C P F TA+ L QR +
Sbjct: 17 ATRKTLLKIKGFSEVKVEKIKEAVQ-----KCQPSASGFITAMELGHQRKRVVKIS---- 67
Query: 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145
T K D+ L GG ++E+ G GKTQ +S++A LP GG +G V YID E
Sbjct: 68 TGSKQFDSILAGGFQSMSISEVYGEFRCGKTQLSHTMSVVAQLPKDMGGAEGKVAYIDTE 127
Query: 146 STFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKV 198
TF R+ ++ S+ I +++ + E L L T EF S
Sbjct: 128 GTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQ---LELLNTLSKEFAGS------ 178
Query: 199 SLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
+ +LL+IDS+ + R A Q L+ + + +AE + +++TNQV
Sbjct: 179 -----EYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCVLMTNQV 233
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
+ + +K V G AHA T R++L G +R
Sbjct: 234 QSDPGASALFAGADGRK----------------PVGGHILAHASTTRVLLRKGRGEERVA 277
Query: 315 NVEKSPTSPPLAFSFTINPSGIS 337
++ SP P ++ I GI+
Sbjct: 278 KIQDSPDCPEREATYVITNGGIN 300
>gi|345100717|pdb|3NTU|A Chain A, Rada Recombinase D302k Mutant In Complex With Amp-Pnp
Length = 319
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 136/334 (40%), Gaps = 65/334 (19%)
Query: 29 DALSLTELELMKLLDVELSEVRSALALV--SEIVCP-PFQTALLLMEQRAATEHLGGHLP 85
D + + + +L D+E ++A ++ + +C F++ + L++QR+ L
Sbjct: 23 DFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQRSTV----WKLS 78
Query: 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF----CLKLSLLAALPAHYGGLDGG--- 138
T LD+ L GG+ VTE G G+GKTQ C+ L L + G
Sbjct: 79 TSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVA 138
Query: 139 ---VIYIDVESTFTSRRMIEM-------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSE 188
+YID E TF R+++M G + F ++ +M ++L
Sbjct: 139 QPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDM--QML--------- 187
Query: 189 FTESLEKIKVSLLQ--NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAE 243
F E +E L+Q N +KL+VIDS+ + + R A Q L H++ + LA+
Sbjct: 188 FAEKIE----DLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLAD 243
Query: 244 FSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIR- 302
++VTNQV S + Q + HIV HA T R
Sbjct: 244 LFNCVVLVTNQV---SAKPDAFFGMAEQAIG----------GHIV-------GHAATFRF 283
Query: 303 LVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
V + K +R + KSP P F I GI
Sbjct: 284 FVRKGKGDKRVAKLYKSPHLPDAEAIFRITEKGI 317
>gi|154344200|ref|XP_001568044.1| putative recombinase rad51 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065378|emb|CAM40808.1| putative recombinase rad51 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 684
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T + LD L GG+P VTE+ GP G GKTQ ++L++ A+P +GG+ G +++
Sbjct: 221 HVTTFSRQLDGILGGGIPVDGVTEISGPPGVGKTQLLMQLAVSCAMPVEFGGMGGACLFV 280
Query: 143 DVESTFTSRRMIEMGASS 160
D E +F R+ +M ++
Sbjct: 281 DTEGSFVVERLEQMATAA 298
>gi|340059041|emb|CCC53412.1| putative RAD51 protein [Trypanosoma vivax Y486]
Length = 410
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 131/308 (42%), Gaps = 31/308 (10%)
Query: 38 LMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCG 97
L+ + + ++V +A +++V F +A++ E R + T + +D L G
Sbjct: 130 LLAVKGISEAKVEKIMAECAKLVPMGFASAIVYHEARKEIIMV----TTGSREVDKLLGG 185
Query: 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157
G+ G +TEL G TGKTQ C L + LP GG +G +YID E TF R++
Sbjct: 186 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPISNGGAEGMALYIDTEGTFRPERLV--- 242
Query: 158 ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217
+ E + K AQ++ + + + L + + +N+ ++++DS AL
Sbjct: 243 --AVAERY--KLDAQDVLANVACARAYNSDHQQNLLVQASAMMAENRFAIIIVDSATALY 298
Query: 218 PGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMD 274
+ R A Q L + + +LAE + +VVTNQV + ++ +K
Sbjct: 299 RTDYNGRSELAARQMHLGKFLRSLQNLAEEYGVAVVVTNQVVANVDGSAQMFQADPRK-- 356
Query: 275 RILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINP 333
+ G AHA T RL L G QR + V SP P F I
Sbjct: 357 --------------PIGGHIMAHASTTRLSLRKGRGEQRIIKVYDSPCLPEAEAIFGIYE 402
Query: 334 SGISLLTD 341
G+ + D
Sbjct: 403 DGVGDVRD 410
>gi|399217798|emb|CCF74685.1| unnamed protein product [Babesia microti strain RI]
Length = 371
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 110/266 (41%), Gaps = 32/266 (12%)
Query: 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150
LD L GGV G +TE+ G TGKTQ C L++ LP G +G ++ID E TF
Sbjct: 117 LDQLLQGGVETGNITEIFGEFRTGKTQLCHTLAVTCQLPVECSGGEGKCLWIDTEGTFRP 176
Query: 151 RRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES----LEKIKVS 199
R++ + + I ++K M +V L +TE L +
Sbjct: 177 ERIVAIAKRFGLSPSDCLDNIAYAKAYNCGMY-SFVVNSSLFLCFYTEHQLELLVEATAM 235
Query: 200 LLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256
+ +++ L+++DS AL + R A Q L + + +A+ + V++NQV
Sbjct: 236 MAESRFALVIVDSATALYRSEYLGRGELANRQMHLCQFLRSLQRIADTFGVACVISNQVV 295
Query: 257 PQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMN 315
+ D S ++ D+ +I+ AHA RL L + K R
Sbjct: 296 CKVGDMSSMFGGN---------DKLPIGGNII-------AHASQTRLFLRKGKGDSRICK 339
Query: 316 VEKSPTSPPLAFSFTINPSGISLLTD 341
+ SP+ P F I+ GI D
Sbjct: 340 IYDSPSLPEGEAIFCISQGGIKDCDD 365
>gi|146330537|gb|ABQ23182.1| Dmc1 [Carassius auratus]
Length = 342
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 111/265 (41%), Gaps = 30/265 (11%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
H+ T D L GGV +TE G TGKTQ L + A LP YG G VI+I
Sbjct: 102 HITTGSLEFDKLLGGGVESMAITEAFGEFRTGKTQLSHTLCVTAQLPGEYGYPGGKVIFI 161
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E+TF R+ ++ A F + H + + +L + + E L+ + +
Sbjct: 162 DSENTFRPERLKDI-ADRFS-VDH-----EAVLDNVLYARAYTSEHQMELLDFVAAKFHE 214
Query: 203 NQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257
KLL+IDS+ AL R A Q L+ +S + ++E + + VTNQ+
Sbjct: 215 EGGVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM-- 272
Query: 258 QSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNV 316
+ D FQ I H++ AHA T R+ L + ++ R +
Sbjct: 273 -TADPGAGMTFQADPKKPI-------GGHVL-------AHASTTRISLRKGRAELRIAKI 317
Query: 317 EKSPTSPPLAFSFTINPSGISLLTD 341
SP P +F I GIS D
Sbjct: 318 FDSPDMPENEATFAITAGGISDAKD 342
>gi|359478653|ref|XP_002281461.2| PREDICTED: DNA repair protein RAD51 homolog 4-like [Vitis vinifera]
Length = 326
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 101/200 (50%), Gaps = 20/200 (10%)
Query: 63 PFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
P+ + L+E + + L T +G+D L GG+ G +TELVGP+ GKTQ CLK+
Sbjct: 71 PWLNGMELLEDAQQNKQV---LSTGCEGIDMLLHGGLCVGHLTELVGPSSAGKTQICLKV 127
Query: 123 SLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE-IFHSKGMAQEMAGRILVL 181
+ + + Y GGV++ID ++F+ R+ + P+ IF M+Q + V
Sbjct: 128 A--SGVATRYM---GGVVFIDTGNSFSPLRIAHF-INQIPDTIFKEVIMSQILCHS--VF 179
Query: 182 QPTSLSEFTESLE---KIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHIS-- 236
++ + LE + +V +QV+LL++DS+ +L+ + G H + IS
Sbjct: 180 DIFAMLDVVHQLEYSLRSQVQTGADQVRLLIVDSISSLITPI--LGGSGSHGRALMISAG 237
Query: 237 -LITSLAEFSRIPIVVTNQV 255
L+ LA + +VVTN +
Sbjct: 238 FLLKKLAHEHNLAVVVTNHM 257
>gi|448582805|ref|ZP_21646309.1| DNA repair and recombination protein RadA [Haloferax gibbonsii ATCC
33959]
gi|445732453|gb|ELZ84036.1| DNA repair and recombination protein RadA [Haloferax gibbonsii ATCC
33959]
Length = 343
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 33/225 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T +++E+R G L ++ +D L GG+ +TE+ G G GK+Q +L+
Sbjct: 66 FETGSMVLERRQQI----GKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGL GG I+ID E TF R+ +M ++ + +E+ G + +
Sbjct: 122 VNVQLPPEQGGLGGGCIFIDSEDTFRPERIDDMVRGLEDDVLEATLADREIEGSV-DDEE 180
Query: 184 TSLSEFTESLEKIKVSLLQNQ-----------------------VKLLVIDSMEALVPGV 220
T + + L+KI V+ N V+LL +DS+ A
Sbjct: 181 TMQALVDDVLDKIHVAKAFNSNHQILLAEKAKELAGEHEDTEWPVRLLCVDSLTAHFRAE 240
Query: 221 HEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSH 260
+ R A Q L+ H+ + + + I+VTNQV P S+
Sbjct: 241 YVGRGELAERQQKLNKHLHDLMRIGDLFNTGILVTNQVASNPDSY 285
>gi|448525707|ref|XP_003869178.1| Elp4 protein [Candida orthopsilosis Co 90-125]
gi|380353531|emb|CCG23041.1| Elp4 protein [Candida orthopsilosis]
Length = 324
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 135/344 (39%), Gaps = 59/344 (17%)
Query: 6 ISEMRLPK--SIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP 63
IS++RL SIA++ + AK + L +V++ +++ A + I
Sbjct: 23 ISKLRLAGICSIASVLSTTRRNLAK---------IKGLSEVKVEKIKEAAGKIQTI---G 70
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +A ++ E R + + T D L GGV +TE+ G GKTQ C L
Sbjct: 71 FVSASVVAELRESVFKI----TTGSNQFDEMLGGGVTSMSITEVFGEYRCGKTQLCHTLC 126
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAG 176
+ A L GG +G V +ID E TF R+ + + I +++ + E
Sbjct: 127 VAAQLTKSLGGAEGKVAFIDTEGTFRPERIKAIAERFGVDPLTCLENISYARALNSEHQ- 185
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSW 233
E +E++ L +LL+IDS+ A + R Q L+
Sbjct: 186 -------------IELVEQLGTELATGSYRLLIIDSILACFRVDYSGRGELNERQQKLNQ 232
Query: 234 HISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGF 293
H++ +T ++E + + +TNQV+ S +K V G
Sbjct: 233 HLAYLTRVSEDYNVAVFLTNQVQSDPGASSLFAAADGRK----------------PVGGH 276
Query: 294 HWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
AHA R++L G +R + SP P + I GI
Sbjct: 277 VLAHASATRILLRKGRGDERVGKLLDSPNMPESECVYVIGEGGI 320
>gi|226501424|ref|NP_001141379.1| meiotic recombination protein DMC1 isoform 1 [Zea mays]
gi|194698360|gb|ACF83264.1| unknown [Zea mays]
gi|194704244|gb|ACF86206.1| unknown [Zea mays]
gi|195626386|gb|ACG35023.1| meiotic recombination protein DMC1 [Zea mays]
gi|414882036|tpg|DAA59167.1| TPA: meiotic recombination protein DMC1 isoform 1 [Zea mays]
gi|414882037|tpg|DAA59168.1| TPA: meiotic recombination protein DMC1 isoform 2 [Zea mays]
Length = 344
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 109/263 (41%), Gaps = 31/263 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GG+ +TE G +GKTQ L + LP H G +G V YID
Sbjct: 108 ITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYID 167
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + A F GM A + I+ + + L + + +
Sbjct: 168 TEGTFRPERIVPI-AERF-------GMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAE 219
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
KLL++DS+ AL R A Q L+ +S +T +AE + + +TNQV
Sbjct: 220 EPFKLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADP 279
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
++ I + H++ AHA TIRL+L G QR +
Sbjct: 280 G--GGMF---------ITDPKKPAGGHVL-------AHAATIRLMLRKGKGEQRVCKIFD 321
Query: 319 SPTSPPLAFSFTINPSGISLLTD 341
+P P F + GI + D
Sbjct: 322 APNLPEGEAVFQVTSGGIMDVKD 344
>gi|320580957|gb|EFW95179.1| DNA repair protein Rad51 [Ogataea parapolymorpha DL-1]
Length = 369
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 30/258 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 124 LTTGSKQLDTLLGGGIETGAITEVFGEFRTGKSQLCHTLAVTCQLPIDNGGGEGKCLYID 183
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQ-EMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + A F G+ + E + + + + L + + +
Sbjct: 184 TEGTFRPIRLVAI-ARRF-------GLDENETLDNVAYARAYNADHQLQLLHQAASMMTE 235
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ LL++DS+ AL + R + Q ++ + + LA+ I +V+TNQV Q
Sbjct: 236 SRFSLLIVDSIMALYRTDYSGRGELSARQMHVAKFMRTLQRLADEFGIAVVITNQVVAQV 295
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEK 318
+ P D + + G AH+ T RL +AK R +
Sbjct: 296 DGGAIFNP-----------DPKK------PIGGNIVAHSSTTRLYFKKAKGANRICKIYD 338
Query: 319 SPTSPPLAFSFTINPSGI 336
SP F + G+
Sbjct: 339 SPCLAESETVFALGQGGV 356
>gi|219127959|ref|XP_002184192.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
CCAP 1055/1]
gi|217404423|gb|EEC44370.1| Rad51 DNA recombination/repair protein [Phaeodactylum tricornutum
CCAP 1055/1]
Length = 456
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 114/268 (42%), Gaps = 68/268 (25%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+LPT L+ LD AL GGV G +TELVGPAG GKTQ ++L ++A+ A G +Y+
Sbjct: 159 YLPTGLEPLDQALRGGVRVGTITELVGPAGVGKTQLAMQLCIMASRYAQ------GCVYV 212
Query: 143 DVESTFTSRRMIEMG---ASSFPEI-FHSKGM------------------------AQEM 174
D E + R+ E+ +S P+ H + + QE+
Sbjct: 213 DTEKKLSVARLREIALQRSSRVPDTNTHGEFLYPSDTTLVESTVDISATSRNCFRSPQEV 272
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQ------------VKLLVIDSMEALVPGVHE 222
+ V P+++ E +L +++ L V+LLV+DS+ A P +
Sbjct: 273 LDNVTVHSPSNIDELFGALSEVEDELFSRNHQSVGSSNAKFPVRLLVLDSIAA--PARRD 330
Query: 223 QRAPGQHPLSWHISLITS----LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILK 278
A L+ + I LA+ + +VV NQV + D ++
Sbjct: 331 FGAGSAPELASTVIKIAQTLKRLADQHHLVVVVINQVGS-----------SILGTDAVI- 378
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLE 306
D+T I LG W H V+ R++ E
Sbjct: 379 DQT----GIRPALGTSWHHCVSTRVLFE 402
>gi|239609785|gb|EEQ86772.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis ER-3]
Length = 337
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 132/329 (40%), Gaps = 54/329 (16%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEH 79
+ + A T L++ +V++ +++ A+ C P F TA+ L QR
Sbjct: 43 VASVHGATRKTLLKIKGFSEVKVEKIKEAIQK-----CQPSASGFITAMELGHQRKRVVR 97
Query: 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGV 139
+ T K D+ L GG ++E+ G GKTQ +S++A LP GG +G V
Sbjct: 98 I----STGSKQFDSILAGGFQSMSISEVYGEFRCGKTQLSHTMSVVAQLPKDMGGAEGKV 153
Query: 140 IYIDVESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES 192
YID E TF R+ ++ S+ I +++ + E L L T EF
Sbjct: 154 AYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQ---LELLNTLAKEFA-- 208
Query: 193 LEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPI 249
+ +LL+IDS+ + R A Q L+ + + +AE + +
Sbjct: 209 ---------GGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCV 259
Query: 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS 309
++TNQV+ + +K V G AHA T R++L
Sbjct: 260 LMTNQVQSDPGASALFAGADGRK----------------PVGGHILAHASTTRVLLRKGR 303
Query: 310 G-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
G +R ++ SP P + I GI+
Sbjct: 304 GDERVAKIQDSPDCPEREAIYVITNGGIN 332
>gi|20094468|ref|NP_614315.1| RadA recombinase [Methanopyrus kandleri AV19]
gi|19887561|gb|AAM02245.1| RadA recombinase [Methanopyrus kandleri AV19]
Length = 316
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 138/336 (41%), Gaps = 46/336 (13%)
Query: 10 RLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALL 69
R P IA I+ A I T D + + V+ S + +A E A
Sbjct: 16 RDPDKIAEIYKAIGIETLSDLAATDPATISDAFGVKESTAKKIIADAREEASKGIMEAKT 75
Query: 70 LMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALP 129
L + E +PT ++G D + GG+P GV+ + GP G GK+QF +++
Sbjct: 76 LADL-LEEEKKRDVIPTGIQGFDERMGGGLPTGVIVGMYGPPGAGKSQFATQVA------ 128
Query: 130 AHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL---VLQPTSL 186
AH V+YID E+ F +R++E+G E+ +E++ R + ++ +L
Sbjct: 129 AHALKEGESVLYIDTENAFRPQRLLEIGGFKKDEL-------KEVSDRFVLRRIIDAAAL 181
Query: 187 SEFTESLEKIKVS-LLQNQVKLLVIDSM-EALVPGVHEQRAPGQHPLSWHI--SLITSLA 242
++ + E +S + K++VIDS+ + P + P + + HI +L+
Sbjct: 182 RQYFDEKEGEFISEAYELTPKVVVIDSISQPFRPYSARDKLPERSRMIAHILNTLLKYCT 241
Query: 243 EFSRIPIVVTN-QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTI 301
++ + +V T+ Q P + + R+ VL H T
Sbjct: 242 AYNALGMVTTHVQANPDAWGK-------------------RWQDVAPTVL----KHIATY 278
Query: 302 RLVLEAKS-GQRFMNVEKSPTSPPLAFSFTINPSGI 336
R ++ K +R + +E +P PP + G+
Sbjct: 279 RFSIDYKGRTERVITLEDAPDKPPFEVQVELTDRGL 314
>gi|448578852|ref|ZP_21644228.1| DNA repair and recombination protein RadA [Haloferax larsenii JCM
13917]
gi|445725435|gb|ELZ77059.1| DNA repair and recombination protein RadA [Haloferax larsenii JCM
13917]
Length = 343
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 33/225 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T +++E+R G L ++ +D L GG+ +TE+ G G GK+Q +L+
Sbjct: 66 FETGSMVLERRQQI----GKLSWQIDEVDELLGGGLETQSITEVYGEFGAGKSQITHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GGL GG I+ID E TF R+ +M ++ + +E+ G + +
Sbjct: 122 VNVQLPPEQGGLGGGCIFIDSEDTFRPERIDDMVRGLEDDVLEATLEDREIEGSV-DDEE 180
Query: 184 TSLSEFTESLEKIKVSLLQNQ-----------------------VKLLVIDSMEALVPGV 220
T + + L+KI V+ N V+LL +DS+ A
Sbjct: 181 TMQALVDDVLDKIHVAKAFNSNHQILLAEKAKELAGDHEDTDWPVRLLCVDSLTAHFRAE 240
Query: 221 HEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSH 260
+ R A Q L+ H+ + + + I+VTNQV P S+
Sbjct: 241 YVGRGELAERQQKLNKHLHDLMRIGDLFNTGILVTNQVASNPDSY 285
>gi|326427154|gb|EGD72724.1| DMC1 protein [Salpingoeca sp. ATCC 50818]
Length = 340
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 115/282 (40%), Gaps = 35/282 (12%)
Query: 63 PFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
PF TA +E R + T K LDA L GG+ +TE+ G TGK+Q C+ L
Sbjct: 84 PFVTAANFLEARQQV----FFISTGAKELDAILGGGIESQQITEIHGEYRTGKSQICMTL 139
Query: 123 SLLAALPAHYGGLDGG-VIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL 181
+ A +P GG VIYID E F R+ + F+ Q +
Sbjct: 140 CISAQVPTDETNYSGGKVIYIDTEGAFRPERL-----EGICDRFNVD--YQAALNNVYFC 192
Query: 182 QPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHIS 236
+ + + + + L Q V+LL+IDS+ A + R A Q L+ ++
Sbjct: 193 RAYNSEQLATLMADVGAILAQEAGIVRLLIIDSIMATFRTDYCGRGELAERQQMLNQVLA 252
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
I LAE + +V+TNQ+ C P M + + HI+ A
Sbjct: 253 AIKRLAEEWNLAVVLTNQM--------CSDPGAT--MSFVSDPKKPVGGHIL-------A 295
Query: 297 HAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
HAV RL L SG QRF + S SF + G++
Sbjct: 296 HAVQTRLSLRKGSGEQRFAKLVCSSRFSEKDASFNLTEGGVA 337
>gi|198451235|ref|XP_001358289.2| GA15983 [Drosophila pseudoobscura pseudoobscura]
gi|198131396|gb|EAL27427.2| GA15983 [Drosophila pseudoobscura pseudoobscura]
Length = 254
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 65 QTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124
++ L + +R + + GH K LD L GG+ +TELVG +GTGKT+ CL+L L
Sbjct: 16 KSCLDRLRERQSKKIATGH-----KSLDRHLGGGISLRQITELVGNSGTGKTKMCLQLCL 70
Query: 125 LAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEI------FHSKGMAQEMAGRI 178
+P GGL+G ++ID F R+ E+ E F + M Q +
Sbjct: 71 NVQIPKTAGGLEGAALFIDTRQDFHPDRLQELARDLEKEYKQRAPDFQASKMLQNVH--- 127
Query: 179 LVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM 213
V P ++ L + + +K++VIDS+
Sbjct: 128 YVSCPNAVQLMATVLSSYRHLIAHPNIKVIVIDSL 162
>gi|156848553|ref|XP_001647158.1| hypothetical protein Kpol_1036p43 [Vanderwaltozyma polyspora DSM
70294]
gi|156117842|gb|EDO19300.1| hypothetical protein Kpol_1036p43 [Vanderwaltozyma polyspora DSM
70294]
Length = 460
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT 149
GLD AL GG+ +TE+ G + TGK+Q + LSL LP GGL+G +YI E
Sbjct: 93 GLDEALGGGIYTQCITEIYGESSTGKSQLAMLLSLCVQLPKSLGGLEGKSVYITTEGDLP 152
Query: 150 SRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN---QVK 206
+ R+ G + E F S G++QE +I + L L+ LL N +K
Sbjct: 153 TERL--EGIINSNETFSSNGVSQE---KIFTVSCNDLINQEHILDVQLPVLLDNSKGSIK 207
Query: 207 LLVIDSME-----ALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
++IDS+ L +++ +H + + LA+ + ++VTNQ+
Sbjct: 208 AIIIDSISHHLRVELQSTSYKESQENRHYIDILAEKLLLLAKKYNVAVIVTNQI 261
>gi|261199103|ref|XP_002625953.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis SLH14081]
gi|239595105|gb|EEQ77686.1| meiotic recombinase Dmc1 [Ajellomyces dermatitidis SLH14081]
Length = 337
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 132/329 (40%), Gaps = 54/329 (16%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPP----FQTALLLMEQRAATEH 79
+ + A T L++ +V++ +++ A+ C P F TA+ L QR
Sbjct: 43 VASVHGATRKTLLKIKGFSEVKVEKIKEAIQK-----CQPSASGFITAMELGHQRKRVVR 97
Query: 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGV 139
+ T K D+ L GG ++E+ G GKTQ +S++A LP GG +G V
Sbjct: 98 I----STGSKQFDSILAGGFQSMSISEVYGEFRCGKTQLSHTMSVVAQLPKDMGGAEGKV 153
Query: 140 IYIDVESTFTSRRMIEMGA-------SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTES 192
YID E TF R+ ++ S+ I +++ + E L L T EF
Sbjct: 154 AYIDTEGTFRPERIAQIAERFGVDPDSALENIAYARALNSEHQ---LELLNTLAKEFA-- 208
Query: 193 LEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPI 249
+ +LL+IDS+ + R A Q L+ + + +AE + +
Sbjct: 209 ---------GGEYRLLIIDSIMNCFRVDYCGRGELADRQQKLNQFLMKLAHMAEEFNVCV 259
Query: 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS 309
++TNQV+ + +K V G AHA T R++L
Sbjct: 260 LMTNQVQSDPGASALFAGADGRK----------------PVGGHILAHASTTRVLLRKGR 303
Query: 310 G-QRFMNVEKSPTSPPLAFSFTINPSGIS 337
G +R ++ SP P + I GI+
Sbjct: 304 GDERVAKIQDSPDCPEREAIYVITNGGIN 332
>gi|32250967|gb|AAP74362.1| DNA repair protein Rad51 [Ogataea angusta]
Length = 369
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 30/258 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GG+ G +TE+ G TGK+Q C L++ LP GG +G +YID
Sbjct: 124 LTTGSKQLDTLLGGGIETGAITEVFGEFRTGKSQLCHTLAVTCQLPIDNGGGEGKCLYID 183
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQ-EMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + A F G+ + E + + + + L + + +
Sbjct: 184 TEGTFRPIRLVAI-ARRF-------GLDENETLDNVAYARAYNADHQLQLLHQAASMMTE 235
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
++ LL++DS+ AL + R + Q ++ + + LA+ I +V+TNQV Q
Sbjct: 236 SRFSLLIVDSIMALYRTDYSGRGELSARQMHVAKFMRTLQRLADEFGIAVVITNQVVAQV 295
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEK 318
+ P D + + G AH+ T RL +AK R +
Sbjct: 296 DGGAIFNP-----------DPKK------PIGGNIVAHSSTTRLYFKKAKGANRICKIYD 338
Query: 319 SPTSPPLAFSFTINPSGI 336
SP F + G+
Sbjct: 339 SPCLAESETVFALGQGGV 356
>gi|414882035|tpg|DAA59166.1| TPA: hypothetical protein ZEAMMB73_144544 [Zea mays]
Length = 342
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 109/263 (41%), Gaps = 31/263 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GG+ +TE G +GKTQ L + LP H G +G V YID
Sbjct: 106 ITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVSTQLPIHMHGGNGKVAYID 165
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E TF R++ + A F GM A + I+ + + L + + +
Sbjct: 166 TEGTFRPERIVPI-AERF-------GMDANAVLDNIIYARAYTYEHQYNLLLGLAAKMAE 217
Query: 203 NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
KLL++DS+ AL R A Q L+ +S +T +AE + + +TNQV
Sbjct: 218 EPFKLLIVDSVIALFRVDFSGRGELAERQQKLAQMLSRLTKIAEEFNVAVYITNQVIADP 277
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEK 318
++ I + H++ AHA TIRL+L G QR +
Sbjct: 278 G--GGMF---------ITDPKKPAGGHVL-------AHAATIRLMLRKGKGEQRVCKIFD 319
Query: 319 SPTSPPLAFSFTINPSGISLLTD 341
+P P F + GI + D
Sbjct: 320 APNLPEGEAVFQVTSGGIMDVKD 342
>gi|330506380|ref|YP_004382808.1| DNA repair and recombination protein RadB [Methanosaeta concilii
GP6]
gi|328927188|gb|AEB66990.1| DNA repair and recombination protein RadB [Methanosaeta concilii
GP6]
Length = 223
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 20/175 (11%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
LP + LD L GG G++TEL G +G+GK+ L+L++ A VI+I
Sbjct: 6 RLPVGCQSLDLLLGGGFESGIITELYGESGSGKSNIVLQLAVAAVARGFR------VIFI 59
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E F++ R ++ A ++A +I++ +P SL + ++ + +
Sbjct: 60 DTEG-FSAERFKQIAGPG----------AADIAAKIMIFEPMSLEQQAMAIREAS-KIAG 107
Query: 203 NQVKLLVIDSMEALVPGV--HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
+ L+++DS +L + E P + L+ +S + +A RIP+V+TNQV
Sbjct: 108 RDLGLVILDSATSLYRMLLEAEDSRPARRALTVQLSELQEIARRHRIPVVITNQV 162
>gi|242398101|ref|YP_002993525.1| DNA repair and recombination protein radB [Thermococcus sibiricus
MM 739]
gi|259551847|sp|C6A0N1.1|RADB_THESM RecName: Full=DNA repair and recombination protein RadB
gi|242264494|gb|ACS89176.1| DNA repair and recombination protein radB [Thermococcus sibiricus
MM 739]
Length = 228
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 21/200 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LDA L GG+ G++T++ GP TGKT +++ LL +G V YID
Sbjct: 2 LTTGSKNLDALLGGGIDKGILTQVYGPFATGKTTLAMQIGLLN---------EGKVAYID 52
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGM-AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
E F+ R+ +M S+GM + + L+ + E +++ +K ++
Sbjct: 53 TEGGFSPERLAKM--------VESRGMDSNSTLQKFLIFEAFDFKEQKKTISNLK-KIVN 103
Query: 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDE 262
+ ++V+DS+ V E+++ L + ++ LA + ++VTNQV S +
Sbjct: 104 EKFSMIVVDSITNHYR-VEEKKSSMTTDLGKQLQVLLWLARKYNLAVIVTNQVYFDSK-Q 161
Query: 263 SCLYPFQVQKMDRILKDRTR 282
+ L P M KD R
Sbjct: 162 NALKPLAEHIMGYKCKDILR 181
>gi|449666109|ref|XP_002158412.2| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog [Hydra
magnipapillata]
gi|11994855|dbj|BAB19960.1| DMC1 homologue CnDMC1 [Hydra vulgaris]
Length = 331
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 130/320 (40%), Gaps = 34/320 (10%)
Query: 24 ITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGH 83
I T K T+ +L+++ + ++V V++ F TAL E R
Sbjct: 36 ICTVKGIQMTTKRKLLQIKGISEAKVDKIKEAVAKCCSSGFFTALEYSEIRKQC----FR 91
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T LD L GG+ +TE G TGKTQ L + A LP G V++ID
Sbjct: 92 ISTGSMELDKLLGGGIESMSITEAFGEFRTGKTQISHTLCVTAQLPGPNNYPGGKVMFID 151
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E+TF R+ S + F+ A M G I+ + + + E L+ + +
Sbjct: 152 TENTFRPNRL-----RSIADRFNLDHEA--MLGNIVFCRAYTSEQQFEVLDMVSAKFHEE 204
Query: 204 Q--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
KLL+IDS+ AL + R A Q L +S + ++E + + +TNQ+
Sbjct: 205 AGVFKLLIIDSIMALFRVDYSGRGELADRQQKLGQMLSKLQKISEEYNVAVWITNQM--- 261
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
+ D FQ I HI+ AHA T R+ L G+ R +
Sbjct: 262 TADPGATMSFQSDPKKPI-------GGHIL-------AHASTTRISLRKGRGELRIAKIY 307
Query: 318 KSPTSPPLAFSFTINPSGIS 337
SP P ++ I GI+
Sbjct: 308 DSPDLPECEATYAITNEGIT 327
>gi|432328525|ref|YP_007246669.1| DNA repair and recombination protein RadA [Aciduliprofundum sp.
MAR08-339]
gi|432135234|gb|AGB04503.1| DNA repair and recombination protein RadA [Aciduliprofundum sp.
MAR08-339]
Length = 330
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 90/213 (42%), Gaps = 50/213 (23%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++ E+R L P D L GG+ +TE G G+GKTQ +L+
Sbjct: 82 FETGDVIYERRKNVTKLTTGSPE----FDRLLGGGLETQAITEFFGEFGSGKTQIMHQLA 137
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LPA GGL+G IYID E+TF R+ +M + L L P
Sbjct: 138 VNVQLPADKGGLEGHAIYIDTENTFRPERIKQMAEA-------------------LGLDP 178
Query: 184 TSLSEFTESLEKIKVSLLQNQ------------------VKLLVIDSMEALVPGVHEQR- 224
+SL+KI V+ N V+LL++DS+ A + R
Sbjct: 179 ------IDSLKKIHVARAFNSNHQILLVDKAMELAKEYPVRLLIVDSLTAHFRAEYVGRG 232
Query: 225 --APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255
A Q L+ H+ + A+ + + VTNQV
Sbjct: 233 SLAERQQLLNKHMHDLLKFADLNNAVVAVTNQV 265
>gi|409082637|gb|EKM82995.1| hypothetical protein AGABI1DRAFT_125473 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 475
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 142/334 (42%), Gaps = 45/334 (13%)
Query: 11 LPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCP----PFQT 66
L S I N+ + D + + EL K + SE+ L+ ++ C FQ
Sbjct: 12 LTDSQKAILRRGNVASVADLVLIPPQELSKRCRTQPSEISQ---LIRDVCCNRDSLAFQF 68
Query: 67 ALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126
L TEHL P LD L GG+ G++ E+VG + GKTQF L+LSL
Sbjct: 69 QTLEDPNNGGTEHLSLGDPV----LDDTLSGGLRTGMIWEIVGESAAGKTQFALQLSLHV 124
Query: 127 ALPAHYGGLDGGVIYIDVESTFTSRRMIEMG-----ASSFPEIFHSKGMAQEMAGRILVL 181
L + GGL G Y+ + + R++++ + + E H+ ++ +L +
Sbjct: 125 QLHSSQGGLGGAACYLTTSTKLQTSRLLQIKQMRNLSDASLEDVHT--ISTPTVHVLLNV 182
Query: 182 QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS- 240
L F +E I ++ + VKL+VID++ L ++ S ++ I++
Sbjct: 183 LDKQLPTF---IETISQTVARKPVKLVVIDALAELFHVANKVTTASLVERSQQLTRISAL 239
Query: 241 ---LAEFSRIPIVVTNQV-------RPQS-HDESCL--YPFQVQKMDRIL----KDRTRY 283
L + I VV N+V P S +E+ L Y Q + +R +DR
Sbjct: 240 LHQLVQRHNIVTVVLNEVLDAFDYNTPDSGKNENGLLVYSEQAKWFNRGYGVYGEDRKE- 298
Query: 284 YSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVE 317
A LG WA+ V R++L +R++ E
Sbjct: 299 -----ASLGLVWANQVNARVMLSRTGRRRYIEEE 327
>gi|410895827|ref|XP_003961401.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Takifugu rubripes]
Length = 342
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 118/281 (41%), Gaps = 36/281 (12%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
FQTA E A +H+ H+ T + D L GG+ +TE G TGKTQ L
Sbjct: 87 FQTAF---EYSAKRKHVF-HITTGSQDFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLC 142
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQ 182
+ + LP G G VI+ID E+TF R+ ++ A F + Q+ +L +
Sbjct: 143 VTSQLPGDDGYSGGKVIFIDTENTFRPDRLRDI-ADKF-------NVDQDAVLDNVLYAR 194
Query: 183 PTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISL 237
+ E L+ + + KLLVIDS+ AL R A Q L+ +S
Sbjct: 195 AYTSEHQMELLDFVAAKFHEEGGVFKLLVIDSIMALFRVDFSGRGELAERQQKLAQMLSR 254
Query: 238 ITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAH 297
+ ++E + + +TNQ+ + D FQ I HI+ AH
Sbjct: 255 LQKISEEYNVAVFITNQM---TADPGAGMTFQADPKKPI-------GGHIL-------AH 297
Query: 298 AVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
A T R+ L G+ R + SP P +F I+ G++
Sbjct: 298 ASTTRISLRKGRGEMRIAKIFDSPDMPENEATFAISTGGVT 338
>gi|407461587|ref|YP_006772904.1| recombinase A [Candidatus Nitrosopumilus koreensis AR1]
gi|407045209|gb|AFS79962.1| recombinase A [Candidatus Nitrosopumilus koreensis AR1]
Length = 215
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 28/216 (12%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T L+ +D L GG+P GV+ ++ G GTGKTQ L+L++ + G V+Y D
Sbjct: 2 ISTGLEKIDKFLSGGIPDGVIVDIFGKNGTGKTQLLLQLAINSIKNG------GHVLYFD 55
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
F R++E+ S ++ ++ +I V + T+ SE S++ I N
Sbjct: 56 TTGGFRPERILEIQKKSETQL--------DLLNQITVSRLTNTSEQINSIKNI-----DN 102
Query: 204 QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFS---RIPIVVTNQVRPQSH 260
L+VID++ L +++ S + + L+ + +IP+VVTN +R
Sbjct: 103 NFSLIVIDNVTDLFSYEYKKDESVFEKNSLFMKYMQKLSYLAISKKIPVVVTNMIRNIEG 162
Query: 261 DE-----SCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
E S + PF K+ ++K+ +++ I +
Sbjct: 163 KEIENMKSAIDPFTHIKI-HLIKNSSKFNGKIYSAF 197
>gi|324517282|gb|ADY46774.1| DNA repair protein RAD51 3 [Ascaris suum]
Length = 266
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 119/282 (42%), Gaps = 37/282 (13%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F T +L+E+ E L T + LD L GG+ G E+VG + GK+Q C++L
Sbjct: 15 FITGDVLLEKENEEEIL----STGVIQLDTLLGGGITAGTFLEIVGLSSAGKSQLCMQL- 69
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
A+ +Y+D E F+++R+ ++ P + + + RI +
Sbjct: 70 ---AVNVQKHKRRNECVYVDTEGGFSTKRICDIAMRCLPSEYVASCLQ-----RIHHCRC 121
Query: 184 TSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLA 242
+ T +L ++ + QN ++ L+++DS+ + G + +H + L++SLA
Sbjct: 122 HDAVQLTSTLHRLDTLISQNPKIGLIIVDSVAMPLRGEIDHM---RHMIMDFSCLLSSLA 178
Query: 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIR 302
R ++V N V F R D ++ + LG W+H T R
Sbjct: 179 VSCRCVVIVVNHV-----------AF------RFRNDEDSESGYLASALGTSWSHRPTSR 221
Query: 303 LVL---EAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
L + E + R + KSP S A + I G+ + D
Sbjct: 222 LWMCPAEGVASYRTAYLMKSPFSAIGAVPYIITEGGVESIDD 263
>gi|328874953|gb|EGG23318.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
Length = 410
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG +TE+ G AG+GKTQ C++L LP GGL+GG IYI E+ F R +++
Sbjct: 59 GGFTPNGITEISGEAGSGKTQLCMQLCFHVQLPYELGGLNGGAIYIGTETPFPMNRFLKI 118
Query: 157 GASSFPEIFHSKGMAQEMA--------GRILVLQPTSLSEFTESLEKIKVSLLQNQV-KL 207
+ I ++ QE ++ + ++ + L K L++N V KL
Sbjct: 119 SQNRLAVINQAR---QENGLPPIDVPPDMVMTRRANDINNLLDMLTKNFHELIKNHVTKL 175
Query: 208 LVIDSMEALV 217
L+IDS+ AL+
Sbjct: 176 LIIDSIAALI 185
>gi|345491182|ref|XP_003426545.1| PREDICTED: DNA repair protein XRCC3 [Nasonia vitripennis]
Length = 252
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 116/269 (43%), Gaps = 49/269 (18%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T LD+ L GG+P +T++ G +GTGKTQ L+ L A +P + + GGV YI
Sbjct: 12 LSTGCSKLDSFLRGGLPRKGITQIYGESGTGKTQLALQFCLSAQIPKNSTDV-GGVAYIC 70
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMA--GRILVLQPTSLSEFTESL----EKIK 197
E+ F S R+ E+F + ++ A + ++ S +E E +++
Sbjct: 71 TEAAFPSSRL--------HELFKKSPLVKDYAISNEKIFIEHISNTEGLEDCIFQPDRLP 122
Query: 198 VSLLQNQVKLLVIDSMEALVPGVHE-----QRAPGQHPLSWHISLITSLAEFSRIPIVVT 252
L +++KLL+IDS+ A ++ RA + + + ++ + E + +V
Sbjct: 123 TLLSMHKIKLLIIDSIAATYRVEYDLMNVKSRAKSLRKVGYQLQKLSKIHEMA---VVCI 179
Query: 253 NQV-----RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA 307
NQV + + SC K++ LG WA VT L
Sbjct: 180 NQVTAMMGNNYTENLSC-------------KEQPS--------LGITWASMVTNSFYLYK 218
Query: 308 KSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
K +R++ + SP P + I SGI
Sbjct: 219 KFNRRYLFITGSPYLPRKNIEYEIIESGI 247
>gi|407847790|gb|EKG03393.1| DNA repair protein RAD51, putative [Trypanosoma cruzi]
Length = 282
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 33 LTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLD 92
LT+ E ++++ LS R S+ PP L M + A + + T +G+D
Sbjct: 73 LTQAEAVEVMGAVLSLYRGNDPADSDYHIPPETRTLEEMLKLEADKE-SERVTTFCRGID 131
Query: 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRR 152
L GG+P G V+E+ GP G GKTQ ++L++ LP GGL G ++ID E +F R
Sbjct: 132 TLLGGGLPVGTVSEVCGPPGVGKTQMLMQLAVNCLLPRELGGLHGSCLFIDTEGSFVPER 191
Query: 153 MIEMGASSFPEI 164
E+ ++ ++
Sbjct: 192 FREIAHAAVMQV 203
>gi|409194654|gb|AFV31617.1| Dmc1 [Acanthopagrus schlegelii]
Length = 342
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 115/280 (41%), Gaps = 34/280 (12%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
FQTA +R H+ T + D L GG+ +TE G TGKTQ L
Sbjct: 87 FQTAFEYSAKRKQV----FHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLC 142
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ A LP G G VI+ID E+TF R+ ++ A F + H + +L +
Sbjct: 143 VTAQLPGEDGYSGGKVIFIDTENTFRPDRLRDI-ADRF-NVDHDA-----VLDNVLYARA 195
Query: 184 TSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLI 238
+ E L+ + + KLL+IDS+ AL R A Q L+ +S +
Sbjct: 196 YTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRL 255
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
++E + + VTNQ+ + D FQ I HI+ AHA
Sbjct: 256 QKISEEYNVAVFVTNQM---TADPGAGMTFQADPKKPI-------GGHIL-------AHA 298
Query: 299 VTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
T R+ L G+ R + SP P +F I+ G++
Sbjct: 299 STTRISLRKGRGEMRIAKIFDSPDMPENEATFAISAGGVT 338
>gi|348502397|ref|XP_003438754.1| PREDICTED: meiotic recombination protein DMC1/LIM15 homolog
[Oreochromis niloticus]
gi|63852084|dbj|BAD98460.1| RecA homolog Dmc1 [Oreochromis niloticus]
Length = 342
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 116/284 (40%), Gaps = 34/284 (11%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
FQTA +R H+ T + D L GGV +TE G TGKTQ L
Sbjct: 87 FQTAFEYSARRKQV----FHVTTGSQEFDKLLGGGVESMAITEAFGEFRTGKTQLSHTLC 142
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ A LP G G VI+ID E+TF R+ ++ A F + H + +L +
Sbjct: 143 VTAQLPGEDGYSGGKVIFIDTENTFRPDRLRDI-ADRF-NVDHDA-----VLDNVLYARA 195
Query: 184 TSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLI 238
+ E L+ + + KLL+IDS+ AL R A Q L+ +S +
Sbjct: 196 YTSEHQMELLDFVAAKFHEEGGVFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRL 255
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
++E + + +TNQ+ + D FQ I HI+ AHA
Sbjct: 256 QKISEEYNVAVFITNQM---TADPGAGMTFQADPKKPI-------GGHIL-------AHA 298
Query: 299 VTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
T R+ L G+ R + SP P +F I+ G++ D
Sbjct: 299 STTRISLRKGRGEMRIAKIFDSPDMPENEATFAISAGGVTDAKD 342
>gi|378729398|gb|EHY55857.1| DNA repair protein rhp51 [Exophiala dermatitidis NIH/UT8656]
Length = 349
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 109/259 (42%), Gaps = 28/259 (10%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LD L GGV G +TE+ G TGK+Q C +++ LP GG +G +YID
Sbjct: 105 ITTGSKNLDRLLGGGVETGSITEIFGEFRTGKSQICHTMAVTCQLPFDMGGGEGKCLYID 164
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E TF R++ + E +E+ + + + + L++ + +
Sbjct: 165 TEGTFRPVRLLSVANRYGLE-------GEEVLDNVAYARAYNSEHQLQLLQQASQMMCET 217
Query: 204 QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ-S 259
+ LL++DS +L + R + Q ++ + + LA+ I +V+TNQV Q
Sbjct: 218 RFSLLIVDSATSLYRTDYNGRGELSSRQSHMAKFLRTLQRLADEFGIAVVITNQVVAQVD 277
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEK 318
S ++ +K + G AHA T RL L+ G+ R +
Sbjct: 278 GGPSAMFNPDPKK----------------PIGGNIIAHASTTRLSLKKGRGETRICKIYD 321
Query: 319 SPTSPPLAFSFTINPSGIS 337
SP P F I GI
Sbjct: 322 SPCLPESDTLFAIYEHGIG 340
>gi|209944608|gb|ACI96535.1| spindle D [Drosophila melanogaster]
Length = 212
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148
K LD GG+ G + EL+G +GTGKTQ CL+L L +P GGL+G ++ID F
Sbjct: 51 KALDTHFGGGISLGHLVELIGNSGTGKTQMCLQLCLNVQIPKAAGGLEGSALFIDTRQDF 110
Query: 149 TSRRMIEMG-------ASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
R++ + A PE A +M +I ++ + + ++ L+
Sbjct: 111 HPDRLMGLALKLERQYAHRVPEF-----KAHKMLQKIHYVRCPKMDQLMATVLSCHRHLV 165
Query: 202 QN-QVKLLVIDSM 213
+ KL+VIDS+
Sbjct: 166 DHPDXKLIVIDSL 178
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,082,533,297
Number of Sequences: 23463169
Number of extensions: 200168927
Number of successful extensions: 665322
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1697
Number of HSP's successfully gapped in prelim test: 5076
Number of HSP's that attempted gapping in prelim test: 657833
Number of HSP's gapped (non-prelim): 7146
length of query: 357
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 214
effective length of database: 9,003,962,200
effective search space: 1926847910800
effective search space used: 1926847910800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)