BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035774
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
pdb|2ZUB|A Chain A, Left Handed Rada
pdb|2ZUB|B Chain B, Left Handed Rada
pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
Length = 324
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 49/299 (16%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEVKKERMNVKKIS----TGSQALDGLLAGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C +LS+ LP GGL G +YID E TF R+ M + +I
Sbjct: 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI- 169
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPGV 220
+ I ++ + ++ ++ + ++ +KL+V+DS+ A PG
Sbjct: 170 ------DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG- 222
Query: 221 HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILK 278
E A Q L+ H+ +T LAE I +++TNQV RP D
Sbjct: 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP----------------DMFYG 266
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ L+ G +R V +P P F + GI
Sbjct: 267 DPT------VAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319
>pdb|1PZN|A Chain A, Rad51 (Rada)
pdb|1PZN|B Chain B, Rad51 (Rada)
pdb|1PZN|C Chain C, Rad51 (Rada)
pdb|1PZN|D Chain D, Rad51 (Rada)
pdb|1PZN|E Chain E, Rad51 (Rada)
pdb|1PZN|F Chain F, Rad51 (Rada)
pdb|1PZN|G Chain G, Rad51 (Rada)
Length = 349
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 130/283 (45%), Gaps = 42/283 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F A +++RA G + T K LD L GG+ +TE+ G G+GKTQ L+
Sbjct: 97 FXRADEYLKKRATI----GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 152
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
+ LP GGL+G VI+ID E+TF R+ EI ++G+ E+ I V +
Sbjct: 153 VXVQLPPEEGGLNGSVIWIDTENTFRPERI--------REIAQNRGLDPDEVLKHIYVAR 204
Query: 183 PTSLSE----FTESLEKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQR---APGQHPLSWH 234
+ + ++ +KIK L ++ VKLL++DS+ + + R A Q L+ H
Sbjct: 205 AFNSNHQXLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 264
Query: 235 ISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
++ + LA I + VTNQV+ + D D TR + G
Sbjct: 265 LADLHRLANLYDIAVFVTNQVQARP--------------DAFFGDPTR------PIGGHI 304
Query: 295 WAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
AH+ T+R+ L + K G+R + +P P F+I GI
Sbjct: 305 LAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGI 347
>pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
Structure Of A Crenarchaeal Rada
Length = 324
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 129/300 (43%), Gaps = 51/300 (17%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + + T + LD L GG+ T
Sbjct: 62 IKEARDALDI-------RFKTALEVKKERXNVKKIS----TGSQALDGLLAGGIETRTXT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C +LS+ LP GGL G +YID E TF R IE A +
Sbjct: 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWER-IENXAKAL---- 165
Query: 166 HSKGMA-QEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPG 219
G+ + I ++ + ++ ++ + ++ +KL+V+DS+ A PG
Sbjct: 166 ---GLDIDNVXNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222
Query: 220 VHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRIL 277
E A Q L+ H+ +T LAE I +++TNQV RP D
Sbjct: 223 -RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVXARP----------------DXFY 265
Query: 278 KDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ L+ G +R V +P P F + GI
Sbjct: 266 GDPT------VAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 120/265 (45%), Gaps = 50/265 (18%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T K LD L GG+ +TE+ G G+GKTQ L+++ LP GGL+G VI+
Sbjct: 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW 64
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSE----FTESLEKI 196
ID E+TF R+ EI ++G+ E+ I V + + + ++ +KI
Sbjct: 65 IDTENTFRPERI--------REIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKI 116
Query: 197 KVSLLQNQ-VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
K L ++ VKLL++DS+ + + R A Q L+ H++ + LA I + VT
Sbjct: 117 KELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT 176
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQ 311
NQV+ HI+ AH+ T+R+ L + K G+
Sbjct: 177 NQVQANG-------------------------GHIL-------AHSATLRVYLRKGKGGK 204
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
R + +P P F+I GI
Sbjct: 205 RIARLIDAPHLPEGEAVFSITEKGI 229
>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 112/264 (42%), Gaps = 48/264 (18%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T K LD L GG+ +TE+ G G+GKTQ L+++ LP GGL+G V++
Sbjct: 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVMW 64
Query: 142 IDVESTFTSRRMIEMGASSF---PEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKV 198
ID E+TF R+ E+ + E+ A+ +L + E +
Sbjct: 65 IDTENTFRPERIREIAQNRGLDPDEVLKHIAYARAFNSNHQML-------LVQQAEDMIK 117
Query: 199 SLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTN 253
LL VKLL++DS+ + + R A Q L+ H++ + LA I + VTN
Sbjct: 118 ELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 177
Query: 254 QVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQR 312
QV+ HI+ AH+ T+R+ L + K G+R
Sbjct: 178 QVQANG-------------------------GHIL-------AHSATLRVYLRKGKGGKR 205
Query: 313 FMNVEKSPTSPPLAFSFTINPSGI 336
+ +P P F+I GI
Sbjct: 206 IARLIDAPHLPEGEAVFSITEKGI 229
>pdb|1N0W|A Chain A, Crystal Structure Of A Rad51-Brca2 Brc Repeat Complex
Length = 243
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 108/264 (40%), Gaps = 30/264 (11%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T K LD L GG+ G +TE G TGKTQ C L++ LP GG +G YI
Sbjct: 5 QITTGSKELDKLLQGGIETGSITEXFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAXYI 64
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E TF R++ + E + G ++ + + + T+ L + ++
Sbjct: 65 DTEGTFRPERLL-----AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAXXVE 117
Query: 203 NQVKLLVIDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
++ LL++DS AL G E A H + L+ EF + +V+TNQV Q
Sbjct: 118 SRYALLIVDSATALYRTDYSGRGELSARQXHLARFLRXLLRLADEFG-VAVVITNQVVAQ 176
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVE 317
D + + +K + G AHA T RL L G+ R +
Sbjct: 177 V-DGAAXFAADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIY 219
Query: 318 KSPTSPPLAFSFTINPSGISLLTD 341
SP P F IN G+ D
Sbjct: 220 DSPCLPEAEAXFAINADGVGDAKD 243
>pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
Length = 343
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 119/287 (41%), Gaps = 34/287 (11%)
Query: 57 SEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKT 116
++++ P F TA E+R + H+ T + D L GG+ +TE G TGKT
Sbjct: 81 NKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKT 136
Query: 117 QFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAG 176
Q L + A LP G G +I+ID E+TF R+ ++ A F + H +
Sbjct: 137 QLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADRF-NVDHDA-----VLD 189
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L + + E L+ + + KLL+IDS+ AL R A Q L
Sbjct: 190 NVLYARAYTSEHQVELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKL 249
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
+ +S + ++E + + VTNQ+ + D FQ I HI+
Sbjct: 250 AQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKPI-------GGHIL--- 296
Query: 292 GFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
AHA T R+ L G+ R + SP P +F I GI
Sbjct: 297 ----AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIG 339
>pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
Length = 343
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 118/287 (41%), Gaps = 34/287 (11%)
Query: 57 SEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKT 116
++++ P F TA E+R H+ T + D L GG+ +TE G TGKT
Sbjct: 81 NKLIEPGFLTAFEYSEKRKMV----FHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKT 136
Query: 117 QFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAG 176
Q L + A LP G G +I+ID E+TF R+ ++ A F + H +
Sbjct: 137 QLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI-ADRF-NVDHDA-----VLD 189
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L + + E L+ + + KLL+IDS+ AL R A Q L
Sbjct: 190 NVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKL 249
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
+ +S + ++E + + VTNQ+ + D FQ I HI+
Sbjct: 250 AQMLSRLQKISEEYNVAVFVTNQM---TADPGATMTFQADPKKPI-------GGHIL--- 296
Query: 292 GFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
AHA T R+ L G+ R + SP P +F I GI
Sbjct: 297 ----AHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIG 339
>pdb|3NTU|A Chain A, Rada Recombinase D302k Mutant In Complex With Amp-Pnp
Length = 319
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 119/296 (40%), Gaps = 62/296 (20%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF----C 119
F++ + L++QR+ L T LD+ L GG+ VTE G G+GKTQ C
Sbjct: 61 FKSGIDLLKQRSTV----WKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 116
Query: 120 LKLSLLAALPAHYGGLDGG------VIYIDVESTFTSRRMIEM-------GASSFPEIFH 166
+ L L + G +YID E TF R+++M G + F
Sbjct: 117 VNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFV 176
Query: 167 SKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ--NQVKLLVIDSMEALVPGVHEQR 224
++ +M ++L F E +E L+Q N +KL+VIDS+ + + R
Sbjct: 177 ARAYNSDM--QML---------FAEKIE----DLIQEGNNIKLVVIDSLTSTFRNEYTGR 221
Query: 225 ---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
A Q L H++ + LA+ ++VTNQV S + Q +
Sbjct: 222 GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV---SAKPDAFFGMAEQAIG------- 271
Query: 282 RYYSHIVAVLGFHWAHAVTIR-LVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HIV HA T R V + K +R + KSP P F I GI
Sbjct: 272 ---GHIV-------GHAATFRFFVRKGKGDKRVAKLYKSPHLPDAEAIFRITEKGI 317
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD+ L GG GV+T++ GP +GKT L+ LL+ V Y+D
Sbjct: 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK---------VAYVD 52
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQ 202
E F+ R+++M ++G+ E A R ++ P+ E + +K ++
Sbjct: 53 TEGGFSPERLVQMA--------ETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDS 104
Query: 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDE 262
N L+V+DS+ A E R+ LS + ++ +A IP++V NQV S E
Sbjct: 105 N-FALVVVDSITAHYRA-EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTE 162
>pdb|1T4G|A Chain A, Atpase In Complex With Amp-pnp
pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium
Co-F
pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp
pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low
Concentration Of K+
pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High
Concentration Of K+
pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0
pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium
pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate
Length = 322
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 118/296 (39%), Gaps = 62/296 (20%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF----C 119
F++ + L++QR+ L T LD+ L GG+ VTE G G+GKTQ C
Sbjct: 64 FKSGIDLLKQRSTV----WKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 119
Query: 120 LKLSLLAALPAHYGGLDGG------VIYIDVESTFTSRRMIEM-------GASSFPEIFH 166
+ L L + G +YID E TF R+++M G + F
Sbjct: 120 VNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFV 179
Query: 167 SKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ--NQVKLLVIDSMEALVPGVHEQR 224
++ +M ++L F E +E L+Q N +KL+VIDS+ + + R
Sbjct: 180 ARAYNSDM--QML---------FAEKIE----DLIQEGNNIKLVVIDSLTSTFRNEYTGR 224
Query: 225 ---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
A Q L H++ + LA+ ++VTNQV S + Q +
Sbjct: 225 GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV---SAKPDAFFGMAEQAIG------- 274
Query: 282 RYYSHIVAVLGFHWAHAVTIR-LVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HIV HA T R V + K +R + SP P F I GI
Sbjct: 275 ---GHIV-------GHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEKGI 320
>pdb|4DC9|A Chain A, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|B Chain B, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|C Chain C, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|D Chain D, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|E Chain E, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|F Chain F, Hexameric Ring Of Methanococcus Voltae Rada
Length = 266
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 118/296 (39%), Gaps = 62/296 (20%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF----C 119
F++ + L++QR+ L T LD+ L GG+ VTE G G+GKTQ C
Sbjct: 8 FKSGIDLLKQRSTV----WKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 63
Query: 120 LKLSLLAALPAHYGGLDGG------VIYIDVESTFTSRRMIEM-------GASSFPEIFH 166
+ L L + G +YID E TF R+++M G + F
Sbjct: 64 VNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFV 123
Query: 167 SKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ--NQVKLLVIDSMEALVPGVHEQR 224
++ +M ++L F E +E L+Q N +KL+VIDS+ + + R
Sbjct: 124 ARAYNSDM--QML---------FAEKIE----DLIQEGNNIKLVVIDSLTSTFRNEYTGR 168
Query: 225 ---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
A Q L H++ + LA+ ++VTNQV S + Q +
Sbjct: 169 GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV---SAKPDAFFGMAEQAIG------- 218
Query: 282 RYYSHIVAVLGFHWAHAVTIR-LVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HIV HA T R V + K +R + SP P F I GI
Sbjct: 219 ---GHIV-------GHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEKGI 264
>pdb|2GDJ|A Chain A, Delta-62 Rada Recombinase In Complex With Amp-Pnp And
Magnesium
Length = 264
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 118/296 (39%), Gaps = 62/296 (20%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF----C 119
F++ + L++QR+ L T LD+ L GG+ VTE G G+GKTQ C
Sbjct: 6 FKSGIDLLKQRSTV----WKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 61
Query: 120 LKLSLLAALPAHYGGLDGG------VIYIDVESTFTSRRMIEM-------GASSFPEIFH 166
+ L L + G +YID E TF R+++M G + F
Sbjct: 62 VNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFV 121
Query: 167 SKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ--NQVKLLVIDSMEALVPGVHEQR 224
++ +M ++L F E +E L+Q N +KL+VIDS+ + + R
Sbjct: 122 ARAYNSDM--QML---------FAEKIE----DLIQEGNNIKLVVIDSLTSTFRNEYTGR 166
Query: 225 ---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
A Q L H++ + LA+ ++VTNQV S + Q +
Sbjct: 167 GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV---SAKPDAFFGMAEQAIG------- 216
Query: 282 RYYSHIVAVLGFHWAHAVTIR-LVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HIV HA T R V + K +R + SP P F I GI
Sbjct: 217 ---GHIV-------GHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEKGI 262
>pdb|3ETL|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp
pdb|3EW9|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Potassium Ions
pdb|3EWA|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Ammonium Ions
Length = 322
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 120/296 (40%), Gaps = 62/296 (20%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF----C 119
F++ + L++QR + L T LD L GG+ VTE G G+GKTQ C
Sbjct: 64 FKSGVELLKQRQSVWRL----STGSTELDTVLAGGIESQSVTEFAGMFGSGKTQIMHQTC 119
Query: 120 LKLSLLAALPAHYGGLDG------GVIYIDVESTFTSRRMIEM-------GASSFPEIFH 166
+ L + + A G+ +YID E TF R+++M G + F
Sbjct: 120 VNLQMREKIFADLEGVVEEELEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFV 179
Query: 167 SKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR-- 224
++ +M ++L F E +E + N +KL++IDS+ + R
Sbjct: 180 ARAYNSDM--QML---------FAEKIEDLIKG--GNNIKLVIIDSLTSTFRNEFTGRGK 226
Query: 225 -APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRT 281
A Q L H++ + LA+ ++VTNQV +P ++ F V +
Sbjct: 227 LAERQQKLGRHMATLNKLADLYNCIVLVTNQVAAKPDAY-------FGVAEQ-------- 271
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
A+ G HA T R L ++K +R + SP P F I GI
Sbjct: 272 -------AIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPHLPDSEAVFRITEKGI 320
>pdb|2F1H|A Chain A, Recombinase In Complex With Amp-pnp And Potassium
pdb|2F1I|A Chain A, Recombinase In Complex With Amp-pnp
pdb|2F1J|A Chain A, Recombinase In Complex With Adp
Length = 322
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 118/296 (39%), Gaps = 62/296 (20%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQF----C 119
F++ + L++QR+ L T LD+ L GG+ VTE G G+GKTQ C
Sbjct: 64 FKSGIDLLKQRSTV----WKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 119
Query: 120 LKLSLLAALPAHYGGLDGG------VIYIDVESTFTSRRMIEM-------GASSFPEIFH 166
+ L L + G +YID + TF R+++M G + F
Sbjct: 120 VNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTDGTFRPERIMQMAEHAGIDGQTVLDNTFV 179
Query: 167 SKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ--NQVKLLVIDSMEALVPGVHEQR 224
++ +M ++L F E +E L+Q N +KL+VIDS+ + + R
Sbjct: 180 ARAYNSDM--QML---------FAEKIE----DLIQEGNNIKLVVIDSLTSTFRNEYTGR 224
Query: 225 ---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
A Q L H++ + LA+ ++VTNQV S + Q +
Sbjct: 225 GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV---SAKPDAFFGMAEQAIG------- 274
Query: 282 RYYSHIVAVLGFHWAHAVTIR-LVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HIV HA T R V + K +R + SP P F I GI
Sbjct: 275 ---GHIV-------GHAATFRFFVRKGKGDKRVAKLYDSPHLPDAEAIFRITEKGI 320
>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
Length = 400
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GGV G +TEL G TGK+Q C L++ +P GG +G +YID
Sbjct: 160 LTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219
Query: 144 VESTFTSRRMIEM 156
E TF R++ +
Sbjct: 220 TEGTFRPVRLVSI 232
>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
Length = 321
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
L T K LD L GGV G +TEL G TGK+Q C L++ +P GG +G +YID
Sbjct: 81 LTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 140
Query: 144 VESTFTSRRMIEM 156
E TF R++ +
Sbjct: 141 TEGTFRPVRLVSI 153
>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
Length = 349
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 84 LPTRLKGLDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+PT LD AL GG+P G V E+ GP +GKT L A A G G +I
Sbjct: 42 IPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALH----AVANAQAAG--GIAAFI 95
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E PE G+ + +LV QP + ++LE + +
Sbjct: 96 DAEHALD------------PEYAKKLGVDTD---SLLVSQPDT---GEQALEIADMLVRS 137
Query: 203 NQVKLLVIDSMEALVP 218
+ ++VIDS+ ALVP
Sbjct: 138 GALDIIVIDSVAALVP 153
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 84 LPTRLKGLDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+PT LD AL GG+P G V E+ GP +GKT L A A G G +I
Sbjct: 42 IPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALH----AVANAQAAG--GIAAFI 95
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E PE G+ + +LV QP + ++LE + +
Sbjct: 96 DAEHALD------------PEYAKKLGVDTD---SLLVSQPDT---GEQALEIADMLVRS 137
Query: 203 NQVKLLVIDSMEALVP 218
+ ++VIDS+ ALVP
Sbjct: 138 GALDIIVIDSVAALVP 153
>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
Length = 349
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 84 LPTRLKGLDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+PT LD AL GG+P G V E+ GP +GKT L A A G G +I
Sbjct: 42 IPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALH----AVANAQAAG--GIAAFI 95
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E PE G+ + +LV QP + ++LE + +
Sbjct: 96 DAEHALD------------PEYAKKLGVDTD---SLLVSQPDT---GEQALEIADMLVRS 137
Query: 203 NQVKLLVIDSMEALVP 218
+ ++VIDS+ ALVP
Sbjct: 138 GALDIIVIDSVAALVP 153
>pdb|1UBC|A Chain A, Structure Of Reca Protein
pdb|1UBE|A Chain A, Msreca-Adp Complex
pdb|1UBF|A Chain A, Msreca-Atpgs Complex
pdb|1UBG|A Chain A, Msreca-Datp Complex
pdb|2G88|A Chain A, Msreca-datp Complex
pdb|2ODN|A Chain A, Msreca-Datp Complex
pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
pdb|2OEP|A Chain A, Msreca-adp-complex
pdb|2OES|A Chain A, Msreca-Native-Ssb
pdb|2OFO|A Chain A, Msreca-native
pdb|2ZR7|A Chain A, Msreca Native Form Ii'
pdb|2ZRM|A Chain A, Msreca Datp Form Iv
pdb|2ZRN|A Chain A, Msreca Form Iv
pdb|2ZRO|A Chain A, Msreca Adp Form Iv
pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
Length = 349
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 84 LPTRLKGLDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+PT LD AL GG+P G V E+ GP +GKT L A A G G +I
Sbjct: 42 IPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALH----AVANAQAAG--GIAAFI 95
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E PE G+ + +LV QP + ++LE + +
Sbjct: 96 DAEHALD------------PEYAKKLGVDTD---SLLVSQPDT---GEQALEIADMLVRS 137
Query: 203 NQVKLLVIDSMEALVP 218
+ ++VIDS+ ALVP
Sbjct: 138 GALDIIVIDSVAALVP 153
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 25/136 (18%)
Query: 84 LPTRLKGLDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+PT LD AL GG+P G V E+ GP +GKT L A A G G +I
Sbjct: 41 IPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALH----AVANAQAAG--GVAAFI 94
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E ++G + +LV QP + ++LE + +
Sbjct: 95 DAEHALDPDYAKKLGVDT---------------DSLLVSQPDT---GEQALEIADMLIRS 136
Query: 203 NQVKLLVIDSMEALVP 218
+ ++VIDS+ ALVP
Sbjct: 137 GALDIVVIDSVAALVP 152
>pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca
Length = 356
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 32/181 (17%)
Query: 84 LPTRLKGLDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+PT +D A GG P G + E+ G +GKT L+L A A G G +I
Sbjct: 42 IPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTT----LALHAIAEAQKMG--GVAAFI 95
Query: 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ 202
D E ++K + ++ +L+ QP ++LE + +
Sbjct: 96 DAEHALDP--------------VYAKNLGVDLK-SLLISQP---DHGEQALEIVDELVRS 137
Query: 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISL-------ITSLAEFSRIPIVVTNQV 255
V L+V+DS+ ALVP + A G + L I S+ ++ TNQ+
Sbjct: 138 GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197
Query: 256 R 256
R
Sbjct: 198 R 198
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKL 122
+ T ++G D GG+P G T + G +GTGKT F ++
Sbjct: 8 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 46
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145
LD AL GG+P G +TE+ GP GKT L A+ A G +ID E
Sbjct: 62 LDLALGVGGIPRGRITEIYGPESGGKTTLAL------AIVAQAQKAGGTCAFIDAE 111
>pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus
P2
Length = 235
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
L T + D + GG+P G L G GTGKT F L
Sbjct: 5 LSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41
>pdb|1N03|A Chain A, Model For Active Reca Filament
pdb|1N03|B Chain B, Model For Active Reca Filament
pdb|1N03|C Chain C, Model For Active Reca Filament
pdb|1N03|D Chain D, Model For Active Reca Filament
pdb|1N03|E Chain E, Model For Active Reca Filament
pdb|1N03|F Chain F, Model For Active Reca Filament
pdb|1N03|G Chain G, Model For Active Reca Filament
pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
Polymer
Length = 352
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 47 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 79
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 48 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 80
>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form 2
pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form3"
pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
Helical Filament Form 4"
pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
Length = 356
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 83
>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1706
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 22 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 54
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 403
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 752
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 1070 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 1102
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 1419 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 1451
>pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 2050
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 22 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 54
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 403
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 752
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 1069 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 1101
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 1447
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 1763 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 1795
>pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1357
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 22 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 54
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 371 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 403
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 752
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 91 LDAAL-CGGVPFGVVTELVGPAGTGKTQFCLKL 122
LD AL GG+P G + E+ GP +GKT L++
Sbjct: 1070 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 1102
>pdb|2DR3|A Chain A, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|B Chain B, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|C Chain C, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|D Chain D, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|E Chain E, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|F Chain F, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
Length = 247
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 25/148 (16%)
Query: 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142
+ T + G+D L GG+P V L G GTGKT F + L L G IY+
Sbjct: 4 RVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQF-LWNGLKMGEPG-----IYV 57
Query: 143 DVES--TFTSRRMIEMGASSFPEIFHSKGMAQEM----AG--------RILVLQPTSLSE 188
+E + M + G P + KGM + AG + +V T + E
Sbjct: 58 ALEEHPVQVRQNMAQFGWDVKP--YEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIRE 115
Query: 189 FTESLEKIKVSLLQNQVKLLVIDSMEAL 216
F E L + ++ K +V+DS+ L
Sbjct: 116 FIEVLRQ---AIRDINAKRVVVDSVTTL 140
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 62 PPFQTALLLMEQRAATEH----------LGGHLPTRLKGLDAALCGGVPFGVVTELVGPA 111
P QT L R H L G L LD P GV+T + G +
Sbjct: 477 PESQTGQYLFADRHTEPHTPREPAGWLELNGVTRNNLDNLDVRF----PLGVMTSVTGVS 532
Query: 112 GTGKTQFCLKLSLLAALPAHYG 133
G+GK+ + +L+ AL AH+G
Sbjct: 533 GSGKSTLVSQ-ALVDALAAHFG 553
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 99 VPFGVVTELVGPAGTGKT 116
+P G VT LVGP+G+GK+
Sbjct: 367 IPSGSVTALVGPSGSGKS 384
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 99 VPFGVVTELVGPAGTGKT 116
+P G VT LVGP+G+GK+
Sbjct: 398 IPSGSVTALVGPSGSGKS 415
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,112,250
Number of Sequences: 62578
Number of extensions: 341972
Number of successful extensions: 824
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 746
Number of HSP's gapped (non-prelim): 73
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)