BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035774
(357 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SK02|RA51B_ARATH DNA repair protein RAD51 homolog 2 OS=Arabidopsis thaliana
GN=RAD51B PE=2 SV=2
Length = 370
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/358 (65%), Positives = 279/358 (77%), Gaps = 2/358 (0%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
MANKLI EM L I+NIFAARNI TAKDALS+TE ELM+LLDV + E+RSA++ +SE
Sbjct: 1 MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEAT 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
PP Q+A L+E++ EHL GHLPT LKGLD LCGG+PFGV+TELVGP G GK+QFC+
Sbjct: 61 SPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM 120
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
KL+L A+ P YGGLDG VIYIDVES F+SRR+IEMG SFPE+FH KGMAQEMAGRILV
Sbjct: 121 KLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILV 180
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240
L+PTSL+ FTES++++K S+LQNQVKLLVIDSM AL+ G ++ A Q L WHIS + S
Sbjct: 181 LRPTSLANFTESIQELKNSILQNQVKLLVIDSMTALLSGENKPGAQRQPQLGWHISFLKS 240
Query: 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYY-SHIVAVLGFHWAHAV 299
LAEFSRIPIVVTNQVR Q+ DE+ Y FQ + D KD T+ Y SH+VA LG +WAHAV
Sbjct: 241 LAEFSRIPIVVTNQVRSQNRDETSQYSFQAKVKDE-FKDNTKTYDSHLVAALGINWAHAV 299
Query: 300 TIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGTEMVVPETCNLSSR 357
TIRLVLEAKSGQR + V KSP SPPLAF F I +GISLL+D+GTE+ P + +R
Sbjct: 300 TIRLVLEAKSGQRIIKVAKSPMSPPLAFPFHITSAGISLLSDNGTELKGPGINTIHAR 357
>sp|O15315|RA51B_HUMAN DNA repair protein RAD51 homolog 2 OS=Homo sapiens GN=RAD51B PE=1
SV=2
Length = 384
Score = 177 bits (450), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 184/345 (53%), Gaps = 8/345 (2%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M +K + + L + + + + I T +D L L+ LELMK+ + V L +VS
Sbjct: 1 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60
Query: 61 CPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCL 120
P QTA + QR+A + L T L LD AL GGV G +TE+ GP G GKTQFC+
Sbjct: 61 APKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCI 119
Query: 121 KLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180
+S+LA LP + GGL+G V+YID ES F++ R++E+ S FP F+++ + ++ +
Sbjct: 120 MMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHL 179
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP-----LSWHI 235
+ + E + +E ++ ++ +KL+++DS+ ++V + + G L+
Sbjct: 180 YRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREA 239
Query: 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRI-LKDRTRYYSHIVAVLGFH 294
S + LAE IP+++TNQ+ V D + L + T S ++A LG
Sbjct: 240 SSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNT 299
Query: 295 WAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
W+H+V RL+L+ S +R + + KSP +P +F +TI G+ L
Sbjct: 300 WSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVL 344
>sp|O35719|RA51B_MOUSE DNA repair protein RAD51 homolog 2 OS=Mus musculus GN=Rad51b PE=2
SV=2
Length = 350
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/350 (34%), Positives = 187/350 (53%), Gaps = 18/350 (5%)
Query: 1 MANKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIV 60
M++K + + L + + + I + LSL+ LELMK+ + V L VS+
Sbjct: 1 MSSKKLRRVGLSPELCDRLSRYQIVNCQHFLSLSPLELMKVTGLSYRGVHELLHTVSKAC 60
Query: 61 CPPFQTALLLMEQRAATEHLG-GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFC 119
P QTA L +R+A HL L T L LD AL GGVP G +TE+ GP G GKTQFC
Sbjct: 61 APQMQTAYELKTRRSA--HLSPAFLSTTLCALDEALHGGVPCGSLTEITGPPGCGKTQFC 118
Query: 120 LKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL 179
+ +S+LA LP GGL+G V+YID ES FT+ R++E+ S FP+ F+++ + R+
Sbjct: 119 IMMSVLATLPTSLGGLEGAVVYIDTESAFTAERLVEIAESRFPQYFNTEEKLLLTSSRVH 178
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG-----QHPLSWH 234
+ + + + LE ++ ++ VKL+++DS+ ++V + + G L
Sbjct: 179 LCRELTCEGLLQRLESLEEEIISKGVKLVIVDSIASVVRKEFDPKLQGNIKERNKFLGKG 238
Query: 235 ISLITSLA-EFSRIPIVVTNQVRPQSHDESCLYPFQVQKM----DRILKDRTRYYSHIVA 289
SL+ LA EFS IP+++TNQ+ +H L P Q + D L + T S +VA
Sbjct: 239 ASLLKYLAGEFS-IPVILTNQI--TTHLSGAL-PSQADLVSPADDLSLSEGTSGSSCLVA 294
Query: 290 VLGFHWAHAVTIRLVLEA-KSGQRFMNVEKSPTSPPLAFSFTINPSGISL 338
LG W H V RL+L+ S +R + + KSP + +F +TI G+ L
Sbjct: 295 ALGNTWGHCVNTRLILQYLDSERRQILIAKSPLAAFTSFVYTIKGEGLVL 344
>sp|O43502|RA51C_HUMAN DNA repair protein RAD51 homolog 3 OS=Homo sapiens GN=RAD51C PE=1
SV=1
Length = 376
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 134/315 (42%), Gaps = 65/315 (20%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GGVP TE+ G G GKTQ C++L++
Sbjct: 86 TALELLEQ----EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVD 141
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF----------HSKGMAQEMA 175
+P +GG+ G ++ID E +F R++++ + + H K +
Sbjct: 142 VQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTL 201
Query: 176 GRILV-LQPTSLSEFTESLEKIKVSLL------QNQVKLLVIDSMEALVPGVHEQRAPGQ 228
IL + ++TE L +V LL ++V+L+++D + P H+
Sbjct: 202 DNILSHIYYFRCRDYTELL--AQVYLLPDFLSEHSKVRLVIVDGIA--FPFRHD-----L 252
Query: 229 HPLSWHISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRT 281
LS L+ SLA R+ +++TNQ+ K+D
Sbjct: 253 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID------- 291
Query: 282 RYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTD 341
R + +V LG W HA TIRL+ QR + KSP+ F I P G
Sbjct: 292 RNQALLVPALGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFR---- 347
Query: 342 DGTEMVVPETCNLSS 356
+ VV C+L +
Sbjct: 348 ---DTVVTSACSLQT 359
>sp|Q8R2J9|RA51C_CRIGR DNA repair protein RAD51 homolog 3 OS=Cricetulus griseus GN=RAD51C
PE=2 SV=1
Length = 366
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 147/350 (42%), Gaps = 66/350 (18%)
Query: 21 ARNITTAKDALSLTELELMKLLDVELSEVRSALALVSE------------IVCPPFQTAL 68
A TA+D L + EL K + + E L +V V TAL
Sbjct: 20 AAGFQTAEDVLGVKPSELSKEVGISKEEALETLQIVRRESLTDKPRCAGASVAGKKYTAL 79
Query: 69 LLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++ +
Sbjct: 80 ELLEQ----EHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQI 135
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMG----------ASSFPEIFHSKGMAQEMAGRI 178
P +GG+ G ++ID E +F R++ + A + + H K + I
Sbjct: 136 PECFGGVAGEAVFIDTEGSFMVDRVVTLANACIQHLHLIAGTHKDEEHQKALEGFTLENI 195
Query: 179 LV-LQPTSLSEFTESLEKIKV--SLLQN--QVKLLVIDSMEALVPGVHEQRAPGQHPLSW 233
L + ++TE L ++ + L N +V+L++ID + +P H+ LS
Sbjct: 196 LSHIYYFRCHDYTELLAQVYLLPDFLSNHSKVQLVIIDGIA--LPFRHD-----LDDLSL 248
Query: 234 HISLIT-------SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSH 286
L+ SLA R+ +++TNQ+ K+D + +
Sbjct: 249 RTRLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID-------KNQAL 287
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
+V LG W HA TIRL+ + QRF + KSP+ F I P G
Sbjct: 288 LVPALGESWGHAATIRLIFHWEQKQRFATLYKSPSQKESTIPFQITPQGF 337
>sp|Q74MX9|RADA_NANEQ DNA repair and recombination protein RadA OS=Nanoarchaeum equitans
(strain Kin4-M) GN=radA PE=3 SV=1
Length = 325
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 146/339 (43%), Gaps = 52/339 (15%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSAL-ALVSEIVCPPFQTALLL 70
PK+ + +A + K A + E ELM+ D+ + R + A + + F+TA +
Sbjct: 21 PKTAEKLISAGYDSLIKIASASVE-ELMEAADIGEATARKIIEAAMERLGLLEFKTAEEV 79
Query: 71 MEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA 130
+E+R T + T K LD+ L GG+ +TE G G+GKTQ +L++ LP
Sbjct: 80 LEERQKT----ARITTMSKNLDSLLGGGIETAALTEFYGEYGSGKTQVGHQLAVDVQLPP 135
Query: 131 HYGGLDGGVIYIDVESTFTSRRMIEMGAS-------SFPEIFHSKGMAQEMAGRILVLQP 183
GGL+G +YID E TF R+ +M + + ++H K + +L
Sbjct: 136 EQGGLEGKAVYIDTEGTFRPERIKQMAEALDLDPKKALKNVYHMKVFNTDHQ----MLAA 191
Query: 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240
E E I KL+V+DS+ AL + R A QH L H+ +
Sbjct: 192 RKAEELIRKGEPI---------KLIVVDSLTALFRAEYTGRGQLAERQHKLGRHVHDLLR 242
Query: 241 LAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
+AE + I VTNQV +P S + +D + AV G AHA
Sbjct: 243 IAELYNVAIYVTNQVMAKPDSF---------IPGLD-----------SVQAVGGHVLAHA 282
Query: 299 VTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
T R+ L + K G R + SP P +F I GI
Sbjct: 283 STYRVFLRKGKKGIRIARLVDSPHLPERETTFVITEEGI 321
>sp|Q924H5|RA51C_MOUSE DNA repair protein RAD51 homolog 3 OS=Mus musculus GN=Rad51c PE=2
SV=1
Length = 366
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 129/288 (44%), Gaps = 44/288 (15%)
Query: 66 TALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125
TAL L+EQ EH G + T LD L GG+P TE+ G G GKTQ C++L++
Sbjct: 77 TALELLEQ----EHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVD 132
Query: 126 AALPAHYGGLDGGVIYIDVESTFTSRRMIEMG----------ASSFPEIFHSKGMAQEMA 175
+P +GG+ G ++ID E +F R++ + A + E H K +
Sbjct: 133 VQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTL 192
Query: 176 GRILV-LQPTSLSEFTESLEKIKV--SLLQN--QVKLLVIDSMEALVPGVH--EQRAPGQ 228
IL + ++TE L ++ + L + +V+L++ID + P H E +
Sbjct: 193 ENILSHIYYFRCHDYTELLAQVYLLPDFLSDHPKVQLVIIDGIA--FPFRHDLEDLSLRT 250
Query: 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIV 288
L+ + SLA R+ +++TNQ+ K+D + + +V
Sbjct: 251 RLLNGLAQQMISLANNHRLAVILTNQM--------------TTKID-------KNQALLV 289
Query: 289 AVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
LG W HA TIRL+ + QRF + KSP+ F I P G
Sbjct: 290 PALGESWGHAATIRLIFHWEQKQRFATLYKSPSQKESTIPFQITPQGF 337
>sp|A3MXX9|RADA_PYRCJ DNA repair and recombination protein RadA OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=radA PE=3 SV=1
Length = 332
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 126/281 (44%), Gaps = 43/281 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +AL + E+R + T ++ LD L GG+ VTE+VG G+GKTQ C +L+
Sbjct: 85 FISALEVYERRKKIRRI----STGVRALDELLGGGIETRAVTEVVGEFGSGKTQLCHQLA 140
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQ 182
++ LP GGL IYID E+TF R++ +I ++G+ + A I +
Sbjct: 141 VMVQLPEDRGGLGAKAIYIDTENTFRPERIM--------QIAKARGLDPDQALNNIFYAR 192
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLI 238
S +E+ K + Q+ V LLV+DS+ A PG E A Q L+ HI+ +
Sbjct: 193 AYSADHQMVLVEQAKSLIRQHNVALLVVDSVIAHFRAEFPG-RENLAERQQKLNKHIADL 251
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
LA+ + +VVTNQV +P + L P G A
Sbjct: 252 LRLADAYDVAVVVTNQVMAQPDVFFGNPLRP----------------------AGGNILA 289
Query: 297 HAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
H T RL L ++K R + SP P SF I G+
Sbjct: 290 HGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 330
>sp|B1YC14|RADA_PYRNV DNA repair and recombination protein RadA OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=radA PE=3 SV=1
Length = 330
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 127/287 (44%), Gaps = 55/287 (19%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +AL + E+R + T +K LD L GG+ VTE+ G G+GKTQ C +L+
Sbjct: 83 FVSALEVYERRKTIRRI----STGVKALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLA 138
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS-------SFPEIFHSKGMAQEMAG 176
++ LP GGL IYID E+TF R++++ + + IF+++ + +
Sbjct: 139 VMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQ- 197
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLS 232
ILV Q S+ + QN V LLV+DS+ + PG E A Q L+
Sbjct: 198 MILVDQAKSI-------------IKQNNVALLVVDSVIAHFRSEFPG-RENLAERQQKLN 243
Query: 233 WHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
H++ + LA+ + +V+TNQV +P + L P
Sbjct: 244 KHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPLRP----------------------A 281
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G AH T RL L ++K R + SP P SF I G+
Sbjct: 282 GGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 328
>sp|Q8ZYR9|RADA_PYRAE DNA repair and recombination protein RadA OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=radA PE=3 SV=1
Length = 333
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 128/287 (44%), Gaps = 55/287 (19%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +AL + E+R + T ++ LD L GG+ VTE+VG G+GKTQ C +L+
Sbjct: 86 FISALEVYERRKKIRRI----STGVRSLDELLGGGIETRAVTEIVGEFGSGKTQLCHQLA 141
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS-------SFPEIFHSKGMAQEMAG 176
++ LP GGL IYID E+TF R++++ + + IF+++ + +
Sbjct: 142 VMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDSDQALHNIFYARAYSSDHQ- 200
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLS 232
ILV Q S+ + Q+ V LLV+DS+ + PG E A Q L+
Sbjct: 201 MILVEQAKSI-------------IKQHNVALLVVDSVIAHFRSEFPG-RENLAERQQKLN 246
Query: 233 WHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
H++ + LA+ + +V+TNQV +P + L P
Sbjct: 247 KHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPLRP----------------------A 284
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G AH T RL L ++K R + SP P SF I G+
Sbjct: 285 GGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 331
>sp|A4WN87|RADA_PYRAR DNA repair and recombination protein RadA OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=radA PE=3
SV=1
Length = 333
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 126/281 (44%), Gaps = 43/281 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +AL + E+R + T ++ LD L GG+ VTE+VG G+GKTQ C +L+
Sbjct: 86 FISALEVYERRKKIRRI----STGVRSLDELLGGGIETRAVTEVVGEFGSGKTQLCHQLA 141
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMA-GRILVLQ 182
++ LP GGL IYID E+TF R+++M ++G+ + A I +
Sbjct: 142 VMVQLPEERGGLGAKAIYIDTENTFRPERIMQMA--------RARGLDPDQALNNIFYAR 193
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLI 238
S +E K + Q+ V L+V+DS+ + PG E A Q L+ H++ +
Sbjct: 194 AYSSDHQMILVEHAKSIVKQHNVALIVVDSVIAHFRSEFPG-RENLAERQQKLNKHVADL 252
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
LA+ + +V+TNQV +P + L P G A
Sbjct: 253 LRLADAYDVAVVITNQVMAQPDVFFGNPLRP----------------------AGGNILA 290
Query: 297 HAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
H T RL L ++K R + + SP P SF I G+
Sbjct: 291 HGATYRLWLRKSKENIRIVKIFDSPYHPEGEVSFRITEEGL 331
>sp|Q2NE95|RADA_METST DNA repair and recombination protein RadA OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=radA PE=3 SV=1
Length = 311
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 42/281 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA +ME+R G + T KGLD + GG+ +TE+ G G+GK+Q +LS
Sbjct: 63 FETAFEVMERREDV----GRITTGSKGLDELIGGGIETQSITEVYGEFGSGKSQISHELS 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF----PEIFHSKGMAQEMAGRIL 179
+ LP GGLDG V++ID E+TF R IE A F E+ +A+
Sbjct: 119 VTTQLPVEEGGLDGEVVFIDTENTFRPER-IEQIAEGFGLNIEEVLKKIHVARAFNSSHQ 177
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVH---EQRAPGQHPLSWHIS 236
+L ++E +S +KL++IDS+ A + E A Q L+ H+
Sbjct: 178 ILMADKINELIQS---------GVNIKLIIIDSLMAHFRAEYVGRESLATRQQKLNQHLH 228
Query: 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
+ ++A + +++TNQV+ K D T+ AV G
Sbjct: 229 TLQTIANTYNVAVLITNQVQS--------------KPDSFFGTPTK------AVGGHVLG 268
Query: 297 HAVTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HA T R++L+ SG+R + SP P F + G+
Sbjct: 269 HASTYRILLKKGLSGKRIARLVDSPHLPEGESVFKVTTEGL 309
>sp|Q9UWR5|RADA_PYRIL DNA repair and recombination protein RadA OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=radA PE=3 SV=2
Length = 330
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 127/287 (44%), Gaps = 55/287 (19%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F +AL + E+R + T ++ LD L GG+ VTE+ G G+GKTQ C +L+
Sbjct: 83 FVSALEVYERRKKIRRI----STGVRALDELLGGGIETRAVTEVAGEFGSGKTQLCHQLA 138
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS-------SFPEIFHSKGMAQEMAG 176
++ LP GGL IYID E+TF R++++ + + IF+++ + +
Sbjct: 139 VMVQLPEERGGLGAKAIYIDTENTFRPERIMQIAKARGLDPDQALNNIFYARAYSSDHQ- 197
Query: 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLS 232
ILV Q S+ + Q+ V LL++DS+ + PG E A Q L+
Sbjct: 198 MILVDQAKSI-------------IRQHNVALLIVDSVIAHFRSEFPG-RENLAERQQKLN 243
Query: 233 WHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAV 290
H++ + LA+ + +V+TNQV +P + L P
Sbjct: 244 KHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPLRP----------------------A 281
Query: 291 LGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
G AH T RL L ++K R + SP P SF I G+
Sbjct: 282 GGNILAHGATYRLWLRKSKENIRIAKIFDSPYHPEGEVSFRITEEGL 328
>sp|A4YCN4|RADA_METS5 DNA repair and recombination protein RadA OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=radA PE=3 SV=1
Length = 324
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 136/298 (45%), Gaps = 47/298 (15%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++RA+ + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEIEQERASVKKI----TTGSQALDGLLGGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
EL G G+GKTQ C ++S+ LP GGL G +YID E TF + R+ M ++ E
Sbjct: 111 ELFGEFGSGKTQICHQVSVNVQLPPERGGLSGKALYIDTEGTFRTERIKAMASALGLE-- 168
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIK-VSLLQNQVKLLVIDSMEALVPGVHEQR 224
+E+ I+ ++ + +E+++ + N +KL+V+DS+ + + R
Sbjct: 169 -----PKEVLQNIMSIRAINTDHQIAIVEELQDIIAKDNSIKLVVVDSITSHFRAEYSGR 223
Query: 225 ---APGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKD 279
A Q L+ H+ + LAE + ++VTNQV RP D D
Sbjct: 224 ENLAVRQQKLNRHLHQLVRLAEIYDLAVIVTNQVMARP----------------DMFYGD 267
Query: 280 RTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
T VAV G H IR+ ++ G +R + +P P F+I +GI
Sbjct: 268 PT------VAVGGHTLYHVPGIRVQIKKSRGNRRIARMVDAPHLPEGEVVFSITNTGI 319
>sp|Q91917|RA51B_XENLA DNA repair protein RAD51 homolog B OS=Xenopus laevis GN=rad51-b
PE=2 SV=1
Length = 336
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 135/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ +G T K LD L
Sbjct: 56 ELLNIKGISEAKAEKILAEAAKLVPMGFTTATEFHQRRSEIIQIG----TGSKELDKLLQ 111
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 112 GGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 169
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + + +++ LL++DS AL
Sbjct: 170 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIVDSATAL 224
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 225 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 282
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 283 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 327
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 328 ADGVGDAKD 336
>sp|O74036|RADA_PYRFU DNA repair and recombination protein RadA OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=radA
PE=1 SV=1
Length = 349
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 124/265 (46%), Gaps = 38/265 (14%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T K LD L GG+ +TE+ G G+GKTQ L+++ LP GGL+G VI+
Sbjct: 111 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW 170
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSE----FTESLEKI 196
ID E+TF R+ EI ++G+ E+ I V + + + ++ +KI
Sbjct: 171 IDTENTFRPERI--------REIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKI 222
Query: 197 KVSLLQNQ-VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
K L ++ VKLL++DS+ + + R A Q L+ H++ + LA I + VT
Sbjct: 223 KELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT 282
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQ 311
NQV+ + D D TR + G AH+ T+R+ L + K G+
Sbjct: 283 NQVQARP--------------DAFFGDPTR------PIGGHILAHSATLRVYLRKGKGGK 322
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
R + +P P F+I GI
Sbjct: 323 RIARLIDAPHLPEGEAVFSITEKGI 347
>sp|Q55075|RADA_SULSO DNA repair and recombination protein RadA OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=radA PE=1 SV=2
Length = 324
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 49/299 (16%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEVKKERMNVKKIS----TGSQALDGLLAGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C +LS+ LP GGL G +YID E TF R+ M + +I
Sbjct: 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI- 169
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPGV 220
+ I ++ + ++ ++ + ++ +KL+V+DS+ A PG
Sbjct: 170 ------DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG- 222
Query: 221 HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILK 278
E A Q L+ H+ +T LAE I +++TNQV RP D
Sbjct: 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP----------------DMFYG 266
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ L+ G +R V +P P F + GI
Sbjct: 267 DPT------VAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319
>sp|C3N7M8|RADA_SULIY DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=radA PE=3 SV=1
Length = 324
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 49/299 (16%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEVKKERMNVKKIS----TGSQALDGLLAGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C +LS+ LP GGL G +YID E TF R+ M + +I
Sbjct: 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI- 169
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPGV 220
+ I ++ + ++ ++ + ++ +KL+V+DS+ A PG
Sbjct: 170 ------DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG- 222
Query: 221 HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILK 278
E A Q L+ H+ +T LAE I +++TNQV RP D
Sbjct: 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP----------------DMFYG 266
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ L+ G +R V +P P F + GI
Sbjct: 267 DPT------VAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319
>sp|C3NFU5|RADA_SULIN DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=radA PE=3 SV=1
Length = 324
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 49/299 (16%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEVKKERMNVKKIS----TGSQALDGLLAGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C +LS+ LP GGL G +YID E TF R+ M + +I
Sbjct: 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI- 169
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPGV 220
+ I ++ + ++ ++ + ++ +KL+V+DS+ A PG
Sbjct: 170 ------DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG- 222
Query: 221 HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILK 278
E A Q L+ H+ +T LAE I +++TNQV RP D
Sbjct: 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP----------------DMFYG 266
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ L+ G +R V +P P F + GI
Sbjct: 267 DPT------VAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319
>sp|C3MY77|RADA_SULIM DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=radA PE=3 SV=1
Length = 324
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 49/299 (16%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEVKKERMNVKKIS----TGSQALDGLLAGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C +LS+ LP GGL G +YID E TF R+ M + +I
Sbjct: 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI- 169
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPGV 220
+ I ++ + ++ ++ + ++ +KL+V+DS+ A PG
Sbjct: 170 ------DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG- 222
Query: 221 HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILK 278
E A Q L+ H+ +T LAE I +++TNQV RP D
Sbjct: 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP----------------DMFYG 266
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ L+ G +R V +P P F + GI
Sbjct: 267 DPT------VAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319
>sp|C3MRI1|RADA_SULIL DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=radA PE=3 SV=1
Length = 324
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 49/299 (16%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEVKKERMNVKKIS----TGSQALDGLLAGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C +LS+ LP GGL G +YID E TF R+ M + +I
Sbjct: 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI- 169
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPGV 220
+ I ++ + ++ ++ + ++ +KL+V+DS+ A PG
Sbjct: 170 ------DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG- 222
Query: 221 HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILK 278
E A Q L+ H+ +T LAE I +++TNQV RP D
Sbjct: 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP----------------DMFYG 266
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ L+ G +R V +P P F + GI
Sbjct: 267 DPT------VAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319
>sp|C4KIT6|RADA_SULIK DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=radA PE=3 SV=1
Length = 324
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 49/299 (16%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEVKKERMNVKKIS----TGSQALDGLLAGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C +LS+ LP GGL G +YID E TF R+ M + +I
Sbjct: 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI- 169
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPGV 220
+ I ++ + ++ ++ + ++ +KL+V+DS+ A PG
Sbjct: 170 ------DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG- 222
Query: 221 HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILK 278
E A Q L+ H+ +T LAE I +++TNQV RP D
Sbjct: 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP----------------DMFYG 266
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ L+ G +R V +P P F + GI
Sbjct: 267 DPT------VAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319
>sp|C3MZK6|RADA_SULIA DNA repair and recombination protein RadA OS=Sulfolobus islandicus
(strain M.16.27) GN=radA PE=3 SV=1
Length = 324
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 49/299 (16%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R + + T + LD L GG+ +T
Sbjct: 62 IKEARDALDI-------RFKTALEVKKERMNVKKIS----TGSQALDGLLAGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C +LS+ LP GGL G +YID E TF R+ M + +I
Sbjct: 111 EFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDI- 169
Query: 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPGV 220
+ I ++ + ++ ++ + ++ +KL+V+DS+ A PG
Sbjct: 170 ------DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG- 222
Query: 221 HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILK 278
E A Q L+ H+ +T LAE I +++TNQV RP D
Sbjct: 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP----------------DMFYG 266
Query: 279 DRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T VAV G H IR+ L+ G +R V +P P F + GI
Sbjct: 267 DPT------VAVGGHTLYHVPGIRIQLKKSRGNRRIARVVDAPHLPEGEVVFALTEEGI 319
>sp|Q9UUL2|RAD57_SCHPO DNA repair protein rhp57 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp57 PE=1 SV=1
Length = 354
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 154/356 (43%), Gaps = 33/356 (9%)
Query: 9 MRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEV-RSALALVSEIVCPPFQTA 67
M + + N + I +A L E+ + LL ++++E+ R SE++ Q +
Sbjct: 1 MDISNYVDNFYFDEKIASA---FELGEVSTVDLLTLDITELERRTHCSQSELLQLIEQIS 57
Query: 68 LLLMEQR-AATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126
LLL R +A++ +L T LD L GG+P G +TE+ G +G+GK+QFC++L L+
Sbjct: 58 LLLQPVRCSASKVTSKYLTTGDVKLDETLHGGIPVGQLTEICGESGSGKSQFCMQLCLMV 117
Query: 127 ALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA---SSFPEIFHSKGMAQEMAGRILVLQP 183
LP GG++ ++I ES ++R+ E+ +P+ + + R+ +
Sbjct: 118 QLPLSLGGMNKAAVFISTESGLETKRLFELARYLPERYPKADKKDIIIKNPGDRVYTILC 177
Query: 184 TSLSEFTESLEKIKVSLLQNQVK--LLVIDSMEALVPGVHEQRAPGQH------------ 229
L E E + + ++ +L N+ K L+++DS+ + H
Sbjct: 178 PDL-ESQEHIIQYQLPILFNRDKIGLVILDSVASNYRAELRYNRSKSHFRDLDNIAKRGN 236
Query: 230 PLSWHISLITSLAEFSRIPIVVTNQVR---PQSHDESCLYPFQVQKMDRILKDRTRYYSH 286
L + +LA +V+ NQV P+ +D L+ Q D T
Sbjct: 237 QLGKLAMTLRTLAHQHEAAVVIANQVSDRIPRDYDAIGLFSLDYQSQWFSGWDDTDPNPK 296
Query: 287 IVAVLGFHWAHAVTIRLVLEAKSGQ------RFMNVEKSPTSPPLAFSFTINPSGI 336
I + LG W + ++ RL L K+ R V SP SP L I GI
Sbjct: 297 IPS-LGLVWTNNISTRLALIKKTDSATNNSGRIFRVVYSPNSPRLDVRICIGSVGI 351
>sp|Q4JAT5|RADA_SULAC DNA repair and recombination protein RadA OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=radA PE=3 SV=1
Length = 321
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 131/300 (43%), Gaps = 51/300 (17%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R T+ + T + LD L GG+ +T
Sbjct: 59 IKEAREALDI-------RFKTALEVKKERMNTKKI----TTGSQALDGLLGGGIETRTMT 107
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165
E G G+GKTQ C ++S+ LP GGL+G +YID E TF R+ M +
Sbjct: 108 EFFGEFGSGKTQLCHQISISVQLPQEKGGLNGKAVYIDTEGTFRWERIEAMAKGA----- 162
Query: 166 HSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSM----EALVPG 219
G+ ++A I ++ + ++ ++ + ++ +KL+++DS+ A PG
Sbjct: 163 ---GLESDIAMNNIYYMRAINSDHQMAIVDDLQELITKDPAIKLIIVDSITSHFRAEYPG 219
Query: 220 VHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRIL 277
E A Q L+ H+ + LAE I +++TNQV RP D
Sbjct: 220 -RENLAVRQQKLNKHLHQLVRLAEMYDIAVIITNQVMARP----------------DMFY 262
Query: 278 KDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTINPSGI 336
D T AV G H IR+ L+ G +R + +P P F I G+
Sbjct: 263 GDPT------TAVGGHTLYHVPGIRVQLKKSRGNKRIARIVDAPHLPEGEVVFAITEEGV 316
>sp|Q9V233|RADA_PYRAB DNA repair and recombination protein RadA OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=radA PE=3 SV=2
Length = 353
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 123/265 (46%), Gaps = 38/265 (14%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T K LD L GG+ +TE+ G G+GKTQ L+++ LP GGL+G VI+
Sbjct: 115 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW 174
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQPTSLSE----FTESLEKI 196
ID E+TF R+ EI ++G+ E+ I V + + + ++ +KI
Sbjct: 175 IDTENTFRPERI--------REIAKNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKI 226
Query: 197 KVSLLQNQ-VKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVT 252
K L ++ VKLL++DS+ + + R A Q L+ H++ + LA I + VT
Sbjct: 227 KELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYEIAVFVT 286
Query: 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQ 311
NQV+ + D D TR + G AH+ T+R+ L + K G+
Sbjct: 287 NQVQARP--------------DAFFGDPTR------PIGGHILAHSATLRVYLRKGKGGK 326
Query: 312 RFMNVEKSPTSPPLAFSFTINPSGI 336
R + +P P F I GI
Sbjct: 327 RVARLIDAPHLPEGEAVFRITEKGI 351
>sp|Q9Y8J4|RADA_DESAM DNA repair and recombination protein RadA OS=Desulfurococcus
amylolyticus GN=radA PE=3 SV=1
Length = 328
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 124/281 (44%), Gaps = 43/281 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA + ++R+ G + T K LD L GGV +TE G G+GKTQ C +LS
Sbjct: 77 FKTAREVKQERSNI----GKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLS 132
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
+ L GGL+G +YID E TF R+ M + G+ ++ I ++
Sbjct: 133 VNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMA--------RALGLDPDKVMDNIYYMR 184
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLI 238
+ ++++ + +N V+L+++DS+ A PG E A Q L+ H+ +
Sbjct: 185 AYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPG-REHLAERQQKLNSHLHQL 243
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
LAE + +VVTNQV RP D D T AV G A
Sbjct: 244 MRLAEAYNVAVVVTNQVMARP----------------DVFYGDPT------TAVGGHVLA 281
Query: 297 HAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
H +R+ L ++K +R V +P P F I GI
Sbjct: 282 HTPGVRIQLRKSKGNKRIARVVDAPHLPEGEVVFVITEEGI 322
>sp|O29269|RADA_ARCFU DNA repair and recombination protein RadA OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=radA PE=3 SV=1
Length = 337
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 123/283 (43%), Gaps = 42/283 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F++ ++E+R + + + T K LD L GGV +TE G G+GKTQ C +L+
Sbjct: 74 FESGDKVLERRRSVKKI----TTGSKDLDELLGGGVETQAITEFFGEFGSGKTQICHQLA 129
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS---SFPEIFHSKGMAQEMAGRILV 180
+ LP GGL+G VI ID E+TF R+I+M + E+ + +AQ +
Sbjct: 130 VNVQLPEDEGGLEGSVIIIDTENTFRPERIIQMAEAKGLDGNEVLKNIYVAQAYNSNHQM 189
Query: 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISL 237
L + E E L+K V+L+++DS+ + + R A Q L+ H+
Sbjct: 190 LLVDNAKELAEKLKK-----EGRPVRLIIVDSLMSHFRAEYVGRGTLADRQQKLNRHLHD 244
Query: 238 ITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAVLGFH 294
+ E IVVTNQV RP D + D T+ HIV
Sbjct: 245 LMKFGELYNAAIVVTNQVMARP----------------DVLFGDPTKPVGGHIV------ 282
Query: 295 WAHAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
AH T R+ L + K R + SP P F + GI
Sbjct: 283 -AHTATFRIYLKKGKDDLRIARLIDSPHLPEGEAIFRVTERGI 324
>sp|Q975Y1|RADA_SULTO DNA repair and recombination protein RadA OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=radA
PE=3 SV=1
Length = 324
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 129/305 (42%), Gaps = 61/305 (20%)
Query: 46 LSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVT 105
+ E R AL + F+TAL + ++R T+ + T + LD L GG+ +T
Sbjct: 62 IKEAREALDI-------RFKTALEVKKERINTKKI----TTGSQALDGLLGGGIETRTMT 110
Query: 106 ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA------- 158
EL G G+GKTQ C +LS+ LP GGL G +YID E TF R+ M
Sbjct: 111 ELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGKAVYIDTEGTFRWERIEAMSKAIGLEPD 170
Query: 159 SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----E 214
S+ I++ + + + Q + + E + K +KL+++DS+
Sbjct: 171 SAMNNIYYMRAINSDH-------QMAIVDDLQELISK------DPAIKLVIVDSVTSHFR 217
Query: 215 ALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQK 272
A PG E A Q L+ H+ + LAE + +++TNQV RP
Sbjct: 218 AEFPG-RENLAVRQQKLNKHLHQLVRLAEMYDLAVIITNQVMARP--------------- 261
Query: 273 MDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFMNVEKSPTSPPLAFSFTI 331
D D T VAV G H IR+ L+ G +R + +P P F I
Sbjct: 262 -DMFYGDPT------VAVGGHTLYHVPGIRVQLKKSRGNKRIARIVDAPHLPEGEVVFAI 314
Query: 332 NPSGI 336
G+
Sbjct: 315 TEEGV 319
>sp|Q91918|RA51A_XENLA DNA repair protein RAD51 homolog A OS=Xenopus laevis GN=rad51-a
PE=2 SV=1
Length = 336
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 134/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 56 ELLNIKGISEAKAEKILAEAAKLVPMGFTTATEFHQRRSEIIQI----STGSKELDKLLQ 111
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GGV G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 112 GGVETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 169
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + + +++ LL++DS AL
Sbjct: 170 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMAESRYALLIVDSATAL 224
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 225 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 282
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 283 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 327
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 328 ADGVGDAKD 336
>sp|P70099|RAD51_CRIGR DNA repair protein RAD51 homolog 1 OS=Cricetulus griseus GN=RAD51
PE=2 SV=1
Length = 339
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 135/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R V SP P
Sbjct: 280 TADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKVYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>sp|P0CW91|RADA_AERPX DNA repair and recombination protein RadA OS=Aeropyrum pernix
GN=radA PE=3 SV=1
Length = 319
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 116/262 (44%), Gaps = 41/262 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GG+ +TEL G G+GKTQ C +LS+ LP GGL+G +YID
Sbjct: 86 ITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYID 145
Query: 144 VESTFTSRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
E TF R+ +M G P+ E+ I ++ + ++K+ +
Sbjct: 146 TEGTFRWERIEQMARGVGLDPD---------EVMKNIYWIRAINSHHQIAIVDKLFTMVK 196
Query: 202 QNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV-- 255
+ +KL+V+DS+ A PG E A Q L+ H+ + LA+ + +V+TNQV
Sbjct: 197 NDNIKLVVVDSVTSHFRAEFPG-RENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMA 255
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
RP D D T+ AV G HA +R+ L+ G +R
Sbjct: 256 RP----------------DVFYGDPTQ------AVGGHVLGHAPGVRVYLKKSRGNKRIA 293
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
V +P P F I GI
Sbjct: 294 RVVDAPHLPEGETVFAITEWGI 315
>sp|Q06609|RAD51_HUMAN DNA repair protein RAD51 homolog 1 OS=Homo sapiens GN=RAD51 PE=1
SV=1
Length = 339
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 135/309 (43%), Gaps = 32/309 (10%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-- 172
Query: 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216
+ E + G ++ + + + T+ L + +++++ LL++DS AL
Sbjct: 173 ---AVAERYGLSG--SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATAL 227
Query: 217 VPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKM 273
+ R + Q L+ + ++ LA+ + +V+TNQV Q D + ++ +K
Sbjct: 228 YRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKK- 285
Query: 274 DRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTIN 332
+ G AHA T RL L G+ R + SP P F IN
Sbjct: 286 ---------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN 330
Query: 333 PSGISLLTD 341
G+ D
Sbjct: 331 ADGVGDAKD 339
>sp|P37383|RAD51_CHICK DNA repair protein RAD51 homolog 1 OS=Gallus gallus GN=RAD51A PE=2
SV=1
Length = 339
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 133/311 (42%), Gaps = 46/311 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ LA +++V F TA ++R+ + T K LD L
Sbjct: 59 ELLNIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + ++L ++E ++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGFNTDHQTQLLYQASAMMAE--------------SRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGI 336
F IN G+
Sbjct: 324 EAMFAINADGV 334
>sp|P0CW92|RADA_AERPE DNA repair and recombination protein RadA OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=radA PE=3 SV=1
Length = 319
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 116/262 (44%), Gaps = 41/262 (15%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T + LD L GG+ +TEL G G+GKTQ C +LS+ LP GGL+G +Y+D
Sbjct: 86 ITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNVQLPEDKGGLEGKAVYVD 145
Query: 144 VESTFTSRRMIEM--GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
E TF R+ +M G P+ E+ I ++ + ++K+ +
Sbjct: 146 TEGTFRWERIEQMARGVGLDPD---------EVMKNIYWIRAINSHHQIAIVDKLFTMVK 196
Query: 202 QNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV-- 255
+ +KL+V+DS+ A PG E A Q L+ H+ + LA+ + +V+TNQV
Sbjct: 197 NDNIKLVVVDSVTSHFRAEFPG-RENLAMRQQLLNRHLHQLMRLADIFNVAVVITNQVMA 255
Query: 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG-QRFM 314
RP D D T+ AV G HA +R+ L+ G +R
Sbjct: 256 RP----------------DVFYGDPTQ------AVGGHVLGHAPGVRVYLKKSRGNKRIA 293
Query: 315 NVEKSPTSPPLAFSFTINPSGI 336
V +P P F I GI
Sbjct: 294 RVVDAPHLPEGETVFAITEWGI 315
>sp|B8D610|RADA_DESK1 DNA repair and recombination protein RadA OS=Desulfurococcus
kamchatkensis (strain 1221n / DSM 18924) GN=radA PE=3
SV=1
Length = 328
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 123/281 (43%), Gaps = 43/281 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA + ++R G + T K LD L GGV +TE G G+GKTQ C +LS
Sbjct: 77 FKTAREVKQERLNI----GKITTGSKSLDELLGGGVETKTITEFFGEYGSGKTQICHQLS 132
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGRILVLQ 182
+ L GGL+G +YID E TF R+ M + G+ ++ I ++
Sbjct: 133 VNVQLTPEKGGLNGRAVYIDTEGTFRWERIEAMA--------RALGLDPDKVMDNIYYMR 184
Query: 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSM----EALVPGVHEQRAPGQHPLSWHISLI 238
+ ++++ + +N V+L+++DS+ A PG E A Q L+ H+ +
Sbjct: 185 AYNSDHQIAIVDELFTFVPKNDVRLVILDSVTSHFRAEYPG-REHLAERQQKLNSHLHQL 243
Query: 239 TSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
LAE + +VVTNQV RP D D T AV G A
Sbjct: 244 MRLAEAYNVAVVVTNQVMARP----------------DVFYGDPT------TAVGGHVLA 281
Query: 297 HAVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGI 336
H +R+ L ++K +R V +P P F I GI
Sbjct: 282 HTPGVRIQLRKSKGNKRIARVVDAPHLPEGEVVFVITEEGI 322
>sp|O27436|RADA_METTH DNA repair and recombination protein RadA OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=radA PE=3 SV=1
Length = 311
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 124/283 (43%), Gaps = 46/283 (16%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA +ME+R G + T K LD + GG+ +TE+ G G+GK+Q +L+
Sbjct: 63 FETAFDVMERRKDV----GRITTGSKALDELIGGGIETQAITEVFGEFGSGKSQLSHELA 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF----PEIFHSKGMAQEMAGRIL 179
+ LP GGLD ++ID E+TF R IE A++F E+ + +A+
Sbjct: 119 VTVQLPEERGGLDAEAVFIDTENTFRPER-IEQIANAFELDLEEVLNKIHIARAFNSSHQ 177
Query: 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHIS 236
+L ++E + + I +L+++DS+ A + R A Q L+ H+
Sbjct: 178 ILMAEKVNELIQEGKNI---------RLVIVDSLTAHFRAEYVGREALATRQQKLNQHLH 228
Query: 237 LITSLAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294
+ ++A + VTNQV RP + + S A+ G
Sbjct: 229 TLQNIANTYNAAVFVTNQVQARPDAF----------------------FGSPTKAIGGHV 266
Query: 295 WAHAVTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
HA T R+ L+ +G+R + SP P F I +GI
Sbjct: 267 LGHAATYRIWLKKGLAGKRIARLVDSPHLPEGECVFKITTAGI 309
>sp|Q2KJ94|RAD51_BOVIN DNA repair protein RAD51 homolog 1 OS=Bos taurus GN=RAD51 PE=2 SV=1
Length = 339
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>sp|Q08297|RAD51_MOUSE DNA repair protein RAD51 homolog 1 OS=Mus musculus GN=Rad51 PE=1
SV=1
Length = 339
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>sp|O77507|RAD51_RABIT DNA repair protein RAD51 homolog 1 OS=Oryctolagus cuniculus
GN=RAD51 PE=2 SV=1
Length = 339
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++R+ + T K LD L
Sbjct: 59 ELINIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVTVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>sp|Q8MKI8|RAD51_CANFA DNA repair protein RAD51 homolog 1 OS=Canis familiaris GN=RAD51
PE=2 SV=1
Length = 339
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 134/316 (42%), Gaps = 46/316 (14%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
EL+ + + ++ L +++V F TA ++R+ + T K LD L
Sbjct: 59 ELISIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQI----TTGSKELDKLLQ 114
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TE+ G TGKTQ C L++ LP GG +G +YID E TF R++ +
Sbjct: 115 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 174
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
G+ + +++G + T+ L + +++++ LL+
Sbjct: 175 AERYGLSGSDVLDNVAYARGF--------------NTDHQTQLLYQASAMMVESRYALLI 220
Query: 210 IDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY 266
+DS AL + R + Q L+ + ++ LA+ + +V+TNQV Q D + ++
Sbjct: 221 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMF 279
Query: 267 PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPL 325
+K + G AHA T RL L G+ R + SP P
Sbjct: 280 AADPKK----------------PIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEA 323
Query: 326 AFSFTINPSGISLLTD 341
F IN G+ D
Sbjct: 324 EAMFAINADGVGDAKD 339
>sp|A5UMW0|RADA_METS3 DNA repair and recombination protein RadA OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=radA PE=3
SV=1
Length = 311
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 38/279 (13%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+TA ++E+R GH+ +G + + GG+ +TE+ G G+GK+Q +L+
Sbjct: 63 FETAYDVLERRRDV----GHISVGSEGFNDLIGGGIETQSITEVFGEFGSGKSQISHELA 118
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFP-EIFHSKGMAQEMAGRILVLQ 182
+ LP GGLDG ++ID E+TF R IE A+ F +I E+ +I V +
Sbjct: 119 VTVQLPPEKGGLDGECVFIDTENTFRPER-IEQIANGFELDI-------DEVLQKIHVAR 170
Query: 183 PTSLSEFTESLEKIKVSLLQ-NQVKLLVIDSMEALVPGVH---EQRAPGQHPLSWHISLI 238
+ S EKI + Q N +KL+++DS+ A + E A Q L+ H+ +
Sbjct: 171 AFNSSHQILMAEKINELIQQGNNIKLVIVDSLMAHFRAEYVGRESLAVRQQKLNQHLHAL 230
Query: 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298
+A + + +TNQV+ K D T+ A+ G HA
Sbjct: 231 QQIANTYNVAVFITNQVQA--------------KPDSFFGSPTK------AIGGHVLGHA 270
Query: 299 VTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGI 336
T R+ L+ +G+R + SP P F I GI
Sbjct: 271 STYRIWLKKGLAGKRIARLVDSPHLPEGECVFKIKTEGI 309
>sp|Q12UG7|RADA_METBU DNA repair and recombination protein RadA OS=Methanococcoides
burtonii (strain DSM 6242) GN=radA PE=3 SV=1
Length = 325
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 121/287 (42%), Gaps = 42/287 (14%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T L++E+R L G L T D + GG+ +TE+ G G+GKTQ +L+
Sbjct: 66 FETGDLVLERRK----LVGKLSTGCTEFDEMMGGGIETQSITEMYGEFGSGKTQIAHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM--------GASSFPEIF-HSKGMAQEM 174
+ LP GGL G VI ID E+TF R+ +M G PE F + +A+
Sbjct: 122 VNVQLPPEQGGLGGSVIMIDTENTFRPERIAQMVKGISDKHGIEYDPEEFLKNIHVARAF 181
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L S +E L+ ++ VKLL++DS+ A + R A Q L
Sbjct: 182 NSNHQILLVDSANELANELKNTEMP-----VKLLIVDSLTAHFRAEYIGRGTLADRQQKL 236
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291
+ H+ I + S +VVTNQV + K D D T+ +
Sbjct: 237 NKHLHEILRFGDLSNACVVVTNQV--------------MSKPDAFFGDPTK------PIG 276
Query: 292 GFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
G H T RL + G+ R + + SP P ++ GI
Sbjct: 277 GHILGHTATFRLYIRKSKGEKRIVKLVDSPNLPDGEALISVTTDGIG 323
>sp|Q99133|RAD51_USTMA DNA repair protein RAD51 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RAD51 PE=3 SV=1
Length = 339
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 113/258 (43%), Gaps = 30/258 (11%)
Query: 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143
+ T K LDA L GG+ G +TEL G TGK+Q C L++ LP GG +G +YID
Sbjct: 102 ITTGSKNLDAILGGGMETGSITELYGEFRTGKSQLCHTLAVTCQLPVDMGGGEGKCLYID 161
Query: 144 VESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN 203
E+TF R++ + E F G +E+ + + + + L + + ++
Sbjct: 162 TENTFRPTRLL-----AVAERFGLNG--EEVLDNVAYARAYNADHQLQLLMQASAMMAES 214
Query: 204 QVKLLVIDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQS 259
+ LL++DS+ +L G E A H + L+ EF + +V+TNQV Q
Sbjct: 215 RFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADEFG-VAVVITNQVVAQV 273
Query: 260 HDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEK 318
D + + +K + G AHA T RL L + + QR +
Sbjct: 274 -DGATAFTADAKK----------------PIGGNIVAHASTTRLSLRKGRGNQRICRIAD 316
Query: 319 SPTSPPLAFSFTINPSGI 336
SP P F I P GI
Sbjct: 317 SPCLPEADAVFAIGPEGI 334
>sp|O93748|RADA_CENSY DNA repair and recombination protein RadA OS=Cenarchaeum symbiosum
(strain A) GN=radA PE=3 SV=2
Length = 398
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 110/259 (42%), Gaps = 31/259 (11%)
Query: 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141
G + T LDA L GG+ +TE+ G G+GKTQFC + + P GGL GGV+Y
Sbjct: 87 GMITTGTDALDALLGGGIETQAITEVFGEFGSGKTQFCHTMCVTTQKPKEEGGLGGGVMY 146
Query: 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL 201
ID E TF R++ + + ++ A+ + G I+V + + S LE+ ++
Sbjct: 147 IDTEGTFRPERVVTIAKA------NNMDPAKLLDG-IIVARAYNSSHQVLILEEAGKTIQ 199
Query: 202 QNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258
+ +KL++ DS L + R A Q L +I L+ +AE ++ TNQV
Sbjct: 200 EENIKLIISDSTTGLFRSEYLGRGTLASRQQKLGRYIRLLARIAETYNCAVLATNQVSSS 259
Query: 259 SHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVE 317
D D TR V G HA T R+ + +R +
Sbjct: 260 P--------------DSFFGDPTR------PVGGNVVGHASTYRIYFRKGGKNKRVAKII 299
Query: 318 KSPTSPPLAFSFTINPSGI 336
SP P F + G+
Sbjct: 300 DSPHHPASEAVFELGERGV 318
>sp|O43542|XRCC3_HUMAN DNA repair protein XRCC3 OS=Homo sapiens GN=XRCC3 PE=1 SV=1
Length = 346
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 153/348 (43%), Gaps = 43/348 (12%)
Query: 12 PKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVS-EIVCPPFQTALLL 70
P+ IA I A+ + + K+ L + +L +L ++ EV L S + TAL L
Sbjct: 10 PRIIAAIKKAK-LKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALQL 68
Query: 71 MEQ--RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128
+Q R T+H L LDA L GG+P +TEL G + GKTQ L+L L
Sbjct: 69 HQQKERFPTQH--QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQF 126
Query: 129 PAHYGGLDGGVIYIDVESTFTSRRMIEMGA------SSFPEIFHSKGMAQEMAGRILVLQ 182
P +GGL+ G +YI E F +R+ ++ A + P K +I +
Sbjct: 127 PRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQK---LRFGSQIFIEH 183
Query: 183 PTSLSEFTESL-EKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI-SLITS 240
+ E + +K+ V L + +L+VIDS+ A P E + P + H+ SL +
Sbjct: 184 VADVDTLLECVNKKVPVLLSRGMARLVVIDSVAA--PFRCEFDSQASAPRARHLQSLGAT 241
Query: 241 LAEFS---RIPIVVTNQVRPQSHDESCLY-PFQVQKMDRILKDRTRYYSHIVAVLGFHWA 296
L E S + P++ NQV ++ + P + + LG WA
Sbjct: 242 LRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGF------------WDERVSPALGITWA 289
Query: 297 HAVTIRLVL------EAKSG--QRFMNVEKSPTSPPLAFSFTINPSGI 336
+ + +RL+ EA G R + V +P PP + S+TI+ G+
Sbjct: 290 NQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGV 337
>sp|P94102|RAD51_ARATH DNA repair protein RAD51 homolog 1 OS=Arabidopsis thaliana GN=RAD51
PE=1 SV=1
Length = 342
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 137/317 (43%), Gaps = 48/317 (15%)
Query: 37 ELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALC 96
+L+++ + ++V + S++V F +A L QR + + + LD L
Sbjct: 62 DLLQIKGISDAKVDKIVEAASKLVPLGFTSASQLHAQRQEIIQI----TSGSRELDKVLE 117
Query: 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156
GG+ G +TEL G +GKTQ C L + LP GG +G +YID E TF +R++++
Sbjct: 118 GGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGTFRPQRLLQI 177
Query: 157 -------GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLV 209
GA + +++ + R+L L+ S+ +++ + LL+
Sbjct: 178 ADRFGLNGADVLENVAYARAYNTDHQSRLL-LEAASM-------------MIETRFALLI 223
Query: 210 IDSMEAL----VPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCL 265
+DS AL G E A H L+ + + LA+ + +V+TNQV Q D S L
Sbjct: 224 VDSATALYRTDFSGRGELSARQMH-LAKFLRSLQKLADEFGVAVVITNQVVAQV-DGSAL 281
Query: 266 YPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL-EAKSGQRFMNVEKSPTSPP 324
+ + G AHA T RL L + ++ +R V SP P
Sbjct: 282 FA----------------GPQFKPIGGNIMAHATTTRLALRKGRAEERICKVISSPCLPE 325
Query: 325 LAFSFTINPSGISLLTD 341
F I+ G++ D
Sbjct: 326 AEARFQISTEGVTDCKD 342
>sp|Q8TK71|RADA_METAC DNA repair and recombination protein RadA OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=radA PE=3 SV=1
Length = 325
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 124/288 (43%), Gaps = 44/288 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T L++E+R L G L T D + GG+ +TEL G G+GKTQ +L+
Sbjct: 66 FETGDLVLERR----KLVGKLTTGCVEFDEMMGGGIETQSITELYGEFGSGKTQVAHQLA 121
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM--------GASSFPEIF-HSKGMAQEM 174
+ + +GGLDG VI ID E+TF R+ +M G PE F + +A+
Sbjct: 122 VNVQMDKEHGGLDGSVIIIDTENTFRPERITQMVKGLSEKYGMELDPEEFLQNIHVARAY 181
Query: 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPL 231
+L S ++ L++ + V+LL++DS+ A + R A Q L
Sbjct: 182 NSNHQILLVDSATDLANELKE-----MGKPVRLLIVDSLMAHFRAEYVGRGTLADRQQKL 236
Query: 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTR-YYSHIVAV 290
+ H+ + + +VVTNQV + K D D TR HIV
Sbjct: 237 NKHMHGLLRFGDLFNACVVVTNQV--------------MAKPDAFFGDPTRPVGGHIV-- 280
Query: 291 LGFHWAHAVTIRLVLEAKSGQ-RFMNVEKSPTSPPLAFSFTINPSGIS 337
H T RL L G+ R + + SP+ P + +G++
Sbjct: 281 -----GHTATFRLYLRKSKGEKRIIRLVDSPSLPEGEAVVAVTTAGLT 323
>sp|Q9HJ68|RADA_THEAC DNA repair and recombination protein RadA OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=radA PE=3 SV=1
Length = 323
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 121/288 (42%), Gaps = 45/288 (15%)
Query: 64 FQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123
F+T ++E+R + + L T K LD L GG+ +TE G G+GKTQ +L+
Sbjct: 74 FETGEEILERRKSIQKL----TTGSKNLDDLLGGGLETQAITEFFGEFGSGKTQIMHQLA 129
Query: 124 LLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183
+ LP GG D V+ ID E+TF R+I+M S + E RI V +
Sbjct: 130 VNCTLPKEKGGFDSDVMMIDTENTFRPERIIQMAKSKGAD-------PDETLKRIHVARA 182
Query: 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240
+ EK + + + +KLL++DS+ A + R A Q L+ H+ +
Sbjct: 183 YNSHHQILLAEKAQDTAKEYNIKLLIVDSLTAHFRSEYVGRGSLAERQQLLNKHMHDLLR 242
Query: 241 LAEFSRIPIVVTNQV--RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHW-AH 297
I VTNQV RP ++ +A +G + H
Sbjct: 243 FGTIYNAVIAVTNQVSARPDV-----------------------FFGDPMAPIGGNIVGH 279
Query: 298 AVTIRLVL-EAKSGQRFMNVEKSPTSPPLAFSFTINPSGISLLTDDGT 344
T R+ L ++K G+R + SP P I+ G+S DGT
Sbjct: 280 TATFRIYLRKSKGGKRIARLIDSPYLPEGETVIQISEEGVS----DGT 323
>sp|P50265|DLH1_CANAX Meiotic recombination protein DLH1 OS=Candida albicans GN=DLH1 PE=3
SV=1
Length = 324
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 134/328 (40%), Gaps = 39/328 (11%)
Query: 17 NIFAARNITTAKDALSLTELELMK---LLDVELSEVRSALALVSEIVCPPFQTALLLMEQ 73
N + I + LS T L K L ++++ +++ A + + F A ++ E
Sbjct: 24 NKLKSAGICSITSVLSTTRRNLTKIKGLSEIKVEKIKEAAGKIKKY---GFLPATIVAES 80
Query: 74 RAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYG 133
R H+ T K D L GG+ +TE+ G GKTQ C L + A LP G
Sbjct: 81 RTKVFHI----TTGSKQFDEILGGGIQSMSITEVFGEFRCGKTQLCHTLCVAAQLPTDMG 136
Query: 134 GLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFT-ES 192
G +G V YID E TF R+ S E + G+ ++ + SE E
Sbjct: 137 GGEGRVAYIDTEGTFRPDRI-----RSIAERY---GVDADICLENISYARALNSEHQIEL 188
Query: 193 LEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLAEFSRIPI 249
+E++ L + +LL++DS+ A + R Q L+ H+S +T +AE I +
Sbjct: 189 VEQLGNELAEGTFRLLIVDSIMACFRVDYSGRGELNERQQKLNQHLSNLTRVAEDYNIAV 248
Query: 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS 309
+TNQV+ + +K V G AHA R++L
Sbjct: 249 FLTNQVQSDPGASALFAAADGRK----------------PVGGHVLAHASATRILLRKGR 292
Query: 310 G-QRFMNVEKSPTSPPLAFSFTINPSGI 336
G +R ++ SP P + I GI
Sbjct: 293 GEERVAKLQDSPNMPEKECVYVIGEGGI 320
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,942,796
Number of Sequences: 539616
Number of extensions: 4772075
Number of successful extensions: 17600
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 613
Number of HSP's that attempted gapping in prelim test: 16788
Number of HSP's gapped (non-prelim): 829
length of query: 357
length of database: 191,569,459
effective HSP length: 119
effective length of query: 238
effective length of database: 127,355,155
effective search space: 30310526890
effective search space used: 30310526890
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)