Query 035774
Match_columns 357
No_of_seqs 340 out of 2694
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03187 meiotic recombination 100.0 2.3E-52 4.9E-57 381.0 33.0 306 6-340 34-343 (344)
2 TIGR02238 recomb_DMC1 meiotic 100.0 5.5E-52 1.2E-56 376.6 33.1 305 6-338 4-312 (313)
3 PLN03186 DNA repair protein RA 100.0 6.9E-50 1.5E-54 365.4 31.5 307 6-340 31-341 (342)
4 PTZ00035 Rad51 protein; Provis 100.0 1.4E-49 3E-54 364.8 32.9 307 6-340 26-336 (337)
5 TIGR02239 recomb_RAD51 DNA rep 100.0 7.2E-49 1.6E-53 357.4 32.2 308 6-340 4-315 (316)
6 PF08423 Rad51: Rad51; InterP 100.0 2.6E-47 5.6E-52 338.2 25.3 250 62-339 2-255 (256)
7 PRK04301 radA DNA repair and r 100.0 3E-45 6.5E-50 336.7 34.0 307 1-338 3-316 (317)
8 KOG1434 Meiotic recombination 100.0 2E-47 4.3E-52 320.9 13.4 299 13-339 30-333 (335)
9 TIGR02236 recomb_radA DNA repa 100.0 2.3E-43 4.9E-48 324.0 32.9 299 8-337 4-309 (310)
10 KOG1564 DNA repair protein RHP 100.0 3.7E-39 7.9E-44 274.9 21.8 312 7-337 4-349 (351)
11 cd01123 Rad51_DMC1_radA Rad51_ 100.0 5.5E-39 1.2E-43 284.1 23.3 230 84-337 1-235 (235)
12 cd01393 recA_like RecA is a b 100.0 1.5E-35 3.2E-40 260.6 22.0 219 84-329 1-226 (226)
13 PRK09361 radB DNA repair and r 100.0 8.5E-35 1.8E-39 255.4 23.4 218 82-340 3-225 (225)
14 COG0468 RecA RecA/RadA recombi 100.0 3.1E-34 6.8E-39 253.3 26.4 223 81-344 39-272 (279)
15 cd01394 radB RadB. The archaea 100.0 1.1E-33 2.3E-38 247.3 22.4 213 84-337 1-218 (218)
16 TIGR02237 recomb_radB DNA repa 100.0 9.4E-33 2E-37 239.8 22.4 207 91-337 1-209 (209)
17 TIGR03877 thermo_KaiC_1 KaiC d 100.0 5.9E-31 1.3E-35 232.3 23.0 213 83-343 2-236 (237)
18 PRK04328 hypothetical protein; 100.0 1E-30 2.2E-35 231.9 23.1 218 81-347 2-242 (249)
19 TIGR03878 thermo_KaiC_2 KaiC d 100.0 1.4E-30 3.1E-35 232.2 23.0 214 83-339 3-254 (259)
20 cd00983 recA RecA is a bacter 100.0 1.2E-30 2.6E-35 235.7 21.6 216 81-340 33-268 (325)
21 PRK09354 recA recombinase A; P 100.0 3E-30 6.5E-35 234.7 21.4 216 81-340 38-273 (349)
22 cd01121 Sms Sms (bacterial rad 100.0 5.5E-30 1.2E-34 237.7 22.7 213 81-347 61-277 (372)
23 COG1066 Sms Predicted ATP-depe 100.0 8.8E-30 1.9E-34 229.6 20.3 211 81-346 72-286 (456)
24 PRK11823 DNA repair protein Ra 100.0 1.3E-29 2.8E-34 241.6 21.9 213 81-347 59-275 (446)
25 TIGR02012 tigrfam_recA protein 100.0 5.4E-30 1.2E-34 231.4 18.0 216 81-340 33-268 (321)
26 PF06745 KaiC: KaiC; InterPro 100.0 1.2E-29 2.7E-34 222.8 19.8 212 84-341 1-225 (226)
27 PRK08760 replicative DNA helic 100.0 1.2E-29 2.7E-34 243.4 21.3 236 78-340 206-466 (476)
28 TIGR00416 sms DNA repair prote 100.0 3.1E-29 6.7E-34 239.0 21.2 213 81-347 73-289 (454)
29 PRK08006 replicative DNA helic 100.0 2.7E-29 5.9E-34 240.1 20.6 227 81-334 204-456 (471)
30 PRK09165 replicative DNA helic 100.0 3.2E-29 6.9E-34 242.0 21.2 243 78-339 194-485 (497)
31 PRK07004 replicative DNA helic 100.0 3.3E-29 7.3E-34 239.6 19.6 232 80-338 192-448 (460)
32 PRK06321 replicative DNA helic 100.0 6.8E-29 1.5E-33 237.2 21.2 235 80-338 205-462 (472)
33 COG0305 DnaB Replicative DNA h 100.0 9.2E-29 2E-33 229.4 21.1 301 13-339 105-431 (435)
34 PRK06904 replicative DNA helic 100.0 5E-29 1.1E-33 238.7 19.3 234 80-340 200-461 (472)
35 PHA02542 41 41 helicase; Provi 100.0 3.8E-28 8.2E-33 231.9 24.1 240 66-334 153-421 (473)
36 TIGR03600 phage_DnaB phage rep 100.0 3.1E-28 6.7E-33 232.7 22.2 223 80-330 173-420 (421)
37 PRK08840 replicative DNA helic 100.0 2.3E-28 5.1E-33 233.3 21.2 233 80-339 196-454 (464)
38 PRK05748 replicative DNA helic 100.0 1.8E-28 4E-33 235.6 20.7 233 80-338 182-439 (448)
39 PRK05636 replicative DNA helic 100.0 1.4E-28 3E-33 236.6 19.5 231 80-336 244-497 (505)
40 PRK05595 replicative DNA helic 100.0 4.2E-28 9.1E-33 232.5 20.3 234 79-339 179-436 (444)
41 PRK09519 recA DNA recombinatio 100.0 9.4E-28 2E-32 237.2 22.7 210 81-334 38-265 (790)
42 PRK06749 replicative DNA helic 100.0 1.1E-27 2.5E-32 226.9 22.1 229 79-334 164-420 (428)
43 TIGR00665 DnaB replicative DNA 100.0 8.4E-28 1.8E-32 230.8 21.3 232 80-338 174-429 (434)
44 PRK08506 replicative DNA helic 100.0 2E-27 4.4E-32 228.3 22.7 230 81-338 172-448 (472)
45 TIGR03881 KaiC_arch_4 KaiC dom 100.0 1.8E-26 3.9E-31 203.2 22.8 208 83-339 1-228 (229)
46 PF03796 DnaB_C: DnaB-like hel 100.0 2.4E-26 5.3E-31 205.9 22.3 230 83-338 1-254 (259)
47 TIGR03880 KaiC_arch_3 KaiC dom 99.9 4.5E-26 9.8E-31 199.9 23.1 211 87-344 1-223 (224)
48 KOG1433 DNA repair protein RAD 99.9 2E-28 4.4E-33 219.4 6.3 293 6-340 27-323 (326)
49 TIGR02655 circ_KaiC circadian 99.9 1.1E-25 2.4E-30 217.7 22.0 226 81-351 242-478 (484)
50 TIGR02655 circ_KaiC circadian 99.9 1.3E-25 2.9E-30 217.2 21.4 216 83-344 2-234 (484)
51 PF00154 RecA: recA bacterial 99.9 1.3E-25 2.8E-30 202.3 19.7 214 81-338 31-264 (322)
52 cd01122 GP4d_helicase GP4d_hel 99.9 1.7E-25 3.6E-30 202.1 20.6 236 82-338 11-268 (271)
53 PRK06067 flagellar accessory p 99.9 3.5E-25 7.7E-30 195.5 22.0 213 81-342 4-230 (234)
54 PRK09302 circadian clock prote 99.9 3.8E-25 8.3E-30 216.2 22.9 219 81-344 10-244 (509)
55 PRK09302 circadian clock prote 99.9 7.4E-25 1.6E-29 214.2 22.8 225 81-350 252-487 (509)
56 cd00984 DnaB_C DnaB helicase C 99.9 6.1E-24 1.3E-28 188.7 19.9 216 90-332 2-241 (242)
57 PRK07773 replicative DNA helic 99.9 5.3E-24 1.1E-28 219.2 14.5 173 78-260 194-381 (886)
58 COG0467 RAD55 RecA-superfamily 99.9 8.5E-22 1.8E-26 176.6 20.3 218 81-346 2-240 (260)
59 PRK08533 flagellar accessory p 99.9 4.9E-21 1.1E-25 167.7 20.3 210 83-340 5-226 (230)
60 PRK05973 replicative DNA helic 99.9 1.6E-20 3.4E-25 163.2 15.0 143 91-260 54-197 (237)
61 PF13481 AAA_25: AAA domain; P 99.8 1.5E-19 3.2E-24 155.0 10.9 170 82-258 12-191 (193)
62 COG2874 FlaH Predicted ATPases 99.8 6.1E-18 1.3E-22 140.6 19.4 210 83-341 9-232 (235)
63 cd01124 KaiC KaiC is a circadi 99.7 8.5E-16 1.8E-20 130.8 18.1 174 104-325 1-186 (187)
64 KOG2859 DNA repair protein, me 99.7 2.5E-16 5.4E-21 130.5 13.2 205 100-310 36-259 (293)
65 cd01125 repA Hexameric Replica 99.7 1.1E-14 2.3E-19 129.0 19.0 210 102-336 1-236 (239)
66 KOG2373 Predicted mitochondria 99.5 5.5E-14 1.2E-18 124.5 9.0 222 87-338 259-493 (514)
67 cd01120 RecA-like_NTPases RecA 99.5 7.7E-13 1.7E-17 109.6 12.1 140 104-260 1-141 (165)
68 COG3598 RepA RecA-family ATPas 99.4 1.6E-11 3.5E-16 108.2 13.7 151 97-260 84-246 (402)
69 PF07088 GvpD: GvpD gas vesicl 99.2 4.8E-10 1E-14 101.8 13.9 195 99-341 7-215 (484)
70 cd00544 CobU Adenosylcobinamid 98.8 4.9E-08 1.1E-12 81.2 11.4 122 104-253 1-123 (169)
71 PRK04296 thymidine kinase; Pro 98.8 2.1E-07 4.6E-12 79.2 14.4 115 101-257 1-117 (190)
72 COG1126 GlnQ ABC-type polar am 98.8 1.6E-07 3.4E-12 79.2 12.0 137 99-255 25-195 (240)
73 PF13479 AAA_24: AAA domain 98.7 6.3E-07 1.4E-11 77.8 14.5 122 102-260 3-141 (213)
74 PRK05800 cobU adenosylcobinami 98.7 1.4E-07 3.1E-12 78.6 9.9 123 103-254 2-124 (170)
75 PF05621 TniB: Bacterial TniB 98.7 3.5E-07 7.6E-12 81.7 12.3 123 105-253 64-187 (302)
76 COG1136 SalX ABC-type antimicr 98.6 5E-07 1.1E-11 77.8 11.1 44 203-255 159-202 (226)
77 COG1135 AbcC ABC-type metal io 98.6 9.7E-07 2.1E-11 78.4 12.8 151 87-255 18-201 (339)
78 PF13401 AAA_22: AAA domain; P 98.6 1.6E-07 3.4E-12 74.8 6.4 124 100-255 2-125 (131)
79 TIGR01618 phage_P_loop phage n 98.5 2.1E-06 4.6E-11 74.2 13.5 122 102-257 12-144 (220)
80 smart00382 AAA ATPases associa 98.5 1E-06 2.2E-11 70.3 10.9 121 102-255 2-125 (148)
81 COG1120 FepC ABC-type cobalami 98.5 1.4E-06 3.1E-11 76.6 10.4 44 203-255 155-198 (258)
82 COG1127 Ttg2A ABC-type transpo 98.5 2.3E-06 5E-11 73.4 11.2 141 99-256 31-206 (263)
83 COG1124 DppF ABC-type dipeptid 98.4 2.3E-06 4.9E-11 73.6 10.6 44 203-255 158-201 (252)
84 COG0410 LivF ABC-type branched 98.4 3.2E-06 7E-11 72.2 10.9 139 99-257 26-198 (237)
85 COG1121 ZnuC ABC-type Mn/Zn tr 98.4 5.1E-06 1.1E-10 72.8 12.1 43 203-255 156-198 (254)
86 COG4604 CeuD ABC-type enteroch 98.4 1.7E-05 3.8E-10 66.1 13.8 41 98-145 23-63 (252)
87 COG1122 CbiO ABC-type cobalt t 98.3 1.2E-05 2.6E-10 70.5 13.4 45 204-257 156-200 (235)
88 PF00004 AAA: ATPase family as 98.3 1.8E-06 4E-11 68.5 7.6 107 105-255 1-111 (132)
89 COG3845 ABC-type uncharacteriz 98.3 3.8E-06 8.2E-11 79.0 10.0 152 82-257 12-201 (501)
90 COG4619 ABC-type uncharacteriz 98.3 1.5E-05 3.3E-10 64.6 12.0 64 84-155 12-77 (223)
91 cd03115 SRP The signal recogni 98.3 1.8E-05 3.9E-10 66.3 13.3 37 104-146 2-38 (173)
92 cd03216 ABC_Carb_Monos_I This 98.3 1.5E-05 3.3E-10 66.1 12.3 120 99-256 23-142 (163)
93 PF05625 PAXNEB: PAXNEB protei 98.3 2.2E-05 4.8E-10 73.4 14.4 222 81-338 27-328 (363)
94 COG3638 ABC-type phosphate/pho 98.2 8.3E-06 1.8E-10 69.8 9.8 156 83-256 12-208 (258)
95 PRK12726 flagellar biosynthesi 98.2 8.6E-05 1.9E-09 68.9 17.0 93 99-216 203-297 (407)
96 PRK10867 signal recognition pa 98.2 0.00011 2.3E-09 70.1 18.3 40 102-146 100-139 (433)
97 PRK00771 signal recognition pa 98.2 0.00012 2.6E-09 69.9 18.6 40 101-146 94-133 (437)
98 cd03214 ABC_Iron-Siderophores_ 98.2 1.9E-05 4.1E-10 66.7 11.2 136 99-257 22-159 (180)
99 TIGR00064 ftsY signal recognit 98.2 9.8E-05 2.1E-09 66.4 16.4 41 100-146 70-110 (272)
100 PRK13650 cbiO cobalt transport 98.2 1.9E-05 4.2E-10 71.5 11.9 45 203-256 157-201 (279)
101 cd03229 ABC_Class3 This class 98.2 1.7E-05 3.7E-10 66.8 10.7 133 99-256 23-161 (178)
102 COG1131 CcmA ABC-type multidru 98.2 1E-05 2.3E-10 73.6 10.0 47 203-258 153-199 (293)
103 cd03246 ABCC_Protease_Secretio 98.2 3.4E-05 7.3E-10 64.7 12.3 128 99-255 25-155 (173)
104 COG0444 DppD ABC-type dipeptid 98.2 2E-05 4.3E-10 70.8 11.2 44 203-255 170-213 (316)
105 PRK11629 lolD lipoprotein tran 98.2 1.4E-05 3.1E-10 70.3 10.3 45 203-256 162-206 (233)
106 cd03237 ABC_RNaseL_inhibitor_d 98.2 2.9E-05 6.3E-10 68.9 12.2 145 97-255 20-175 (246)
107 TIGR01425 SRP54_euk signal rec 98.2 0.0002 4.3E-09 68.0 18.4 39 102-146 100-138 (429)
108 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.2 1.5E-05 3.3E-10 69.4 10.2 44 203-255 157-200 (218)
109 TIGR02211 LolD_lipo_ex lipopro 98.2 1.6E-05 3.6E-10 69.3 10.3 45 203-256 158-202 (221)
110 PRK13635 cbiO cobalt transport 98.2 2.6E-05 5.6E-10 70.6 11.8 45 203-256 157-201 (279)
111 PRK11701 phnK phosphonate C-P 98.2 2.8E-05 6.2E-10 69.6 12.0 45 203-256 168-212 (258)
112 PRK10584 putative ABC transpor 98.2 1.9E-05 4.1E-10 69.3 10.6 45 203-256 163-207 (228)
113 PRK09473 oppD oligopeptide tra 98.2 2.3E-05 4.9E-10 72.7 11.5 46 203-257 178-223 (330)
114 cd03301 ABC_MalK_N The N-termi 98.1 1.3E-05 2.7E-10 69.6 9.2 45 203-256 147-191 (213)
115 COG0411 LivG ABC-type branched 98.1 2.5E-06 5.3E-11 73.4 4.5 45 203-256 166-210 (250)
116 PF00448 SRP54: SRP54-type pro 98.1 3.3E-05 7.1E-10 66.0 11.5 93 103-215 2-94 (196)
117 TIGR02314 ABC_MetN D-methionin 98.1 2E-05 4.4E-10 73.2 10.9 46 203-257 157-202 (343)
118 cd00009 AAA The AAA+ (ATPases 98.1 2.9E-05 6.4E-10 62.3 10.6 40 101-146 18-57 (151)
119 PRK13648 cbiO cobalt transport 98.1 3.1E-05 6.8E-10 69.7 11.8 45 203-256 159-203 (269)
120 PRK10416 signal recognition pa 98.1 0.00014 3E-09 66.8 16.1 41 100-146 112-152 (318)
121 TIGR00959 ffh signal recogniti 98.1 0.00028 6.1E-09 67.3 18.4 40 102-146 99-138 (428)
122 PRK13633 cobalt transporter AT 98.1 1.6E-05 3.5E-10 72.1 9.6 46 203-257 161-206 (280)
123 TIGR01166 cbiO cobalt transpor 98.1 1.6E-05 3.4E-10 67.8 8.9 26 99-124 15-40 (190)
124 PRK13646 cbiO cobalt transport 98.1 2.9E-05 6.4E-10 70.6 11.1 45 203-256 162-206 (286)
125 COG4608 AppF ABC-type oligopep 98.1 3.1E-05 6.6E-10 68.1 10.6 139 88-256 26-170 (268)
126 PRK13636 cbiO cobalt transport 98.1 3E-05 6.4E-10 70.4 11.1 46 203-257 158-203 (283)
127 cd03230 ABC_DR_subfamily_A Thi 98.1 3.4E-05 7.4E-10 64.6 10.6 129 99-255 23-154 (173)
128 cd03238 ABC_UvrA The excision 98.1 1.7E-05 3.6E-10 66.6 8.6 25 99-123 18-42 (176)
129 PRK13634 cbiO cobalt transport 98.1 2E-05 4.4E-10 71.8 9.8 46 203-257 162-207 (290)
130 cd03298 ABC_ThiQ_thiamine_tran 98.1 3.6E-05 7.7E-10 66.7 10.9 45 203-256 145-189 (211)
131 cd03222 ABC_RNaseL_inhibitor T 98.1 4.4E-05 9.6E-10 64.1 11.0 111 99-256 22-132 (177)
132 cd00267 ABC_ATPase ABC (ATP-bi 98.1 6.4E-05 1.4E-09 61.9 11.9 120 99-257 22-141 (157)
133 cd03265 ABC_DrrA DrrA is the A 98.1 3.3E-05 7.2E-10 67.4 10.7 44 203-255 148-191 (220)
134 cd03225 ABC_cobalt_CbiO_domain 98.1 4.3E-05 9.3E-10 66.2 11.3 26 99-124 24-49 (211)
135 COG1125 OpuBA ABC-type proline 98.1 8.3E-05 1.8E-09 64.5 12.6 52 87-146 13-64 (309)
136 TIGR03415 ABC_choXWV_ATP choli 98.1 2.4E-05 5.3E-10 73.6 10.3 46 203-257 181-226 (382)
137 TIGR01186 proV glycine betaine 98.1 2.1E-05 4.5E-10 73.6 9.8 46 203-257 146-191 (363)
138 cd03247 ABCC_cytochrome_bd The 98.1 3.4E-05 7.4E-10 64.9 10.3 131 99-255 25-156 (178)
139 TIGR01184 ntrCD nitrate transp 98.1 3.1E-05 6.7E-10 68.1 10.3 44 203-255 131-174 (230)
140 TIGR03864 PQQ_ABC_ATP ABC tran 98.1 3.5E-05 7.6E-10 68.0 10.7 45 203-256 149-193 (236)
141 PRK11022 dppD dipeptide transp 98.1 4.1E-05 8.8E-10 70.9 11.5 46 203-257 170-215 (326)
142 PRK13652 cbiO cobalt transport 98.1 2.3E-05 5E-10 70.9 9.6 46 203-257 154-199 (277)
143 PRK14250 phosphate ABC transpo 98.1 4.8E-05 1E-09 67.4 11.4 44 203-255 148-191 (241)
144 PRK11308 dppF dipeptide transp 98.1 4.1E-05 9E-10 70.9 11.3 46 203-257 171-216 (327)
145 cd03256 ABC_PhnC_transporter A 98.1 2.7E-05 5.8E-10 68.9 9.7 44 203-255 161-204 (241)
146 PRK13537 nodulation ABC transp 98.0 3.1E-05 6.7E-10 71.1 10.2 34 90-124 22-55 (306)
147 cd03261 ABC_Org_Solvent_Resist 98.0 4.8E-05 1E-09 67.1 11.1 44 203-255 153-196 (235)
148 COG1123 ATPase components of v 98.0 5.7E-05 1.2E-09 72.9 12.2 44 203-255 446-489 (539)
149 PRK13539 cytochrome c biogenes 98.0 4.9E-05 1.1E-09 65.7 10.9 26 99-124 25-50 (207)
150 TIGR03608 L_ocin_972_ABC putat 98.0 3.6E-05 7.8E-10 66.4 10.0 26 99-124 21-46 (206)
151 PRK10070 glycine betaine trans 98.0 2.7E-05 5.8E-10 73.8 9.8 46 203-257 181-226 (400)
152 cd03294 ABC_Pro_Gly_Bertaine T 98.0 3.3E-05 7.1E-10 69.6 9.9 44 203-255 177-220 (269)
153 TIGR01188 drrA daunorubicin re 98.0 5.4E-05 1.2E-09 69.4 11.5 45 203-257 141-185 (302)
154 cd03259 ABC_Carb_Solutes_like 98.0 3.6E-05 7.8E-10 66.8 9.8 44 203-255 147-190 (213)
155 cd03268 ABC_BcrA_bacitracin_re 98.0 6E-05 1.3E-09 65.1 11.2 26 99-124 23-48 (208)
156 PRK09544 znuC high-affinity zi 98.0 3.5E-05 7.7E-10 68.6 9.9 142 99-257 27-182 (251)
157 cd03228 ABCC_MRP_Like The MRP 98.0 7.1E-05 1.5E-09 62.6 11.2 27 99-125 25-51 (171)
158 cd03231 ABC_CcmA_heme_exporter 98.0 4.4E-05 9.5E-10 65.7 10.1 26 99-124 23-48 (201)
159 PRK11153 metN DL-methionine tr 98.0 2.7E-05 5.8E-10 72.6 9.4 46 203-257 157-202 (343)
160 PRK12377 putative replication 98.0 6.6E-05 1.4E-09 66.4 11.3 37 103-145 102-138 (248)
161 TIGR02323 CP_lyasePhnK phospho 98.0 7.6E-05 1.6E-09 66.6 11.9 44 203-255 165-208 (253)
162 cd03293 ABC_NrtD_SsuB_transpor 98.0 6E-05 1.3E-09 65.7 11.0 44 203-255 148-191 (220)
163 COG2884 FtsE Predicted ATPase 98.0 2.3E-05 4.9E-10 65.0 7.6 44 82-126 9-52 (223)
164 PRK10247 putative ABC transpor 98.0 7.5E-05 1.6E-09 65.4 11.6 44 203-255 154-197 (225)
165 PRK13640 cbiO cobalt transport 98.0 7E-05 1.5E-09 68.0 11.7 45 203-256 160-204 (282)
166 TIGR00968 3a0106s01 sulfate AB 98.0 4.3E-05 9.3E-10 67.5 10.1 46 203-257 147-192 (237)
167 cd03258 ABC_MetN_methionine_tr 98.0 4.9E-05 1.1E-09 66.9 10.4 44 203-255 157-200 (233)
168 cd03300 ABC_PotA_N PotA is an 98.0 3.9E-05 8.4E-10 67.5 9.6 45 203-256 147-191 (232)
169 PRK13642 cbiO cobalt transport 98.0 5.5E-05 1.2E-09 68.5 10.8 45 203-256 157-201 (277)
170 PRK13647 cbiO cobalt transport 98.0 6.5E-05 1.4E-09 67.9 11.2 44 203-256 155-198 (274)
171 PRK11247 ssuB aliphatic sulfon 98.0 0.00011 2.4E-09 65.7 12.3 45 203-256 150-194 (257)
172 TIGR01277 thiQ thiamine ABC tr 98.0 4.9E-05 1.1E-09 65.9 9.8 45 203-256 145-189 (213)
173 COG3842 PotA ABC-type spermidi 98.0 4E-05 8.6E-10 70.6 9.5 51 88-146 18-68 (352)
174 COG1117 PstB ABC-type phosphat 98.0 6.5E-05 1.4E-09 63.5 9.8 28 98-125 29-56 (253)
175 PRK13632 cbiO cobalt transport 98.0 7E-05 1.5E-09 67.5 11.0 45 203-256 159-203 (271)
176 PRK14722 flhF flagellar biosyn 98.0 0.00027 5.8E-09 66.1 14.7 44 99-146 134-177 (374)
177 PRK13637 cbiO cobalt transport 98.0 3.7E-05 8.1E-10 69.9 9.0 45 203-256 161-205 (287)
178 PRK10771 thiQ thiamine transpo 98.0 9E-05 1.9E-09 65.2 11.2 46 203-257 146-191 (232)
179 cd03296 ABC_CysA_sulfate_impor 98.0 5.1E-05 1.1E-09 67.1 9.7 44 203-255 153-196 (239)
180 cd03226 ABC_cobalt_CbiO_domain 98.0 6.9E-05 1.5E-09 64.6 10.2 26 99-124 23-48 (205)
181 cd03262 ABC_HisP_GlnQ_permease 98.0 6.3E-05 1.4E-09 65.2 10.0 26 99-124 23-48 (213)
182 TIGR02982 heterocyst_DevA ABC 97.9 0.00018 3.8E-09 62.8 12.6 44 203-255 158-201 (220)
183 cd03292 ABC_FtsE_transporter F 97.9 7.9E-05 1.7E-09 64.6 10.4 26 99-124 24-49 (214)
184 cd03267 ABC_NatA_like Similar 97.9 4.9E-05 1.1E-09 67.1 9.1 45 203-256 170-214 (236)
185 PF13173 AAA_14: AAA domain 97.9 0.00015 3.3E-09 57.4 11.1 98 102-257 2-100 (128)
186 TIGR02315 ABC_phnC phosphonate 97.9 5E-05 1.1E-09 67.3 9.3 44 203-255 162-205 (243)
187 cd03232 ABC_PDR_domain2 The pl 97.9 0.00011 2.5E-09 62.6 11.1 135 99-255 30-167 (192)
188 PRK13538 cytochrome c biogenes 97.9 0.00012 2.7E-09 63.0 11.4 26 99-124 24-49 (204)
189 COG4107 PhnK ABC-type phosphon 97.9 0.00019 4.1E-09 58.7 11.5 41 99-145 29-69 (258)
190 PRK10851 sulfate/thiosulfate t 97.9 4.1E-05 9E-10 71.6 9.0 46 203-257 153-198 (353)
191 PRK12724 flagellar biosynthesi 97.9 9.2E-05 2E-09 69.7 11.2 43 99-146 220-262 (432)
192 cd03266 ABC_NatA_sodium_export 97.9 6.9E-05 1.5E-09 65.2 9.8 26 99-124 28-53 (218)
193 cd03215 ABC_Carb_Monos_II This 97.9 9.8E-05 2.1E-09 62.4 10.4 27 99-125 23-49 (182)
194 TIGR03005 ectoine_ehuA ectoine 97.9 7.7E-05 1.7E-09 66.5 10.3 45 203-256 163-207 (252)
195 PRK11650 ugpC glycerol-3-phosp 97.9 6.2E-05 1.4E-09 70.5 9.9 46 203-257 151-196 (356)
196 PRK14974 cell division protein 97.9 0.0002 4.2E-09 66.2 12.9 39 101-145 139-177 (336)
197 PRK13645 cbiO cobalt transport 97.9 6.4E-05 1.4E-09 68.5 9.7 45 203-256 167-211 (289)
198 cd03219 ABC_Mj1267_LivG_branch 97.9 3.9E-05 8.5E-10 67.6 8.1 26 99-124 23-48 (236)
199 cd03235 ABC_Metallic_Cations A 97.9 6E-05 1.3E-09 65.4 9.1 26 99-124 22-47 (213)
200 PRK11432 fbpC ferric transport 97.9 7.9E-05 1.7E-09 69.6 10.4 47 203-258 153-199 (351)
201 cd03223 ABCD_peroxisomal_ALDP 97.9 0.00036 7.7E-09 58.0 13.4 27 99-125 24-50 (166)
202 cd03213 ABCG_EPDR ABCG transpo 97.9 0.0001 2.2E-09 63.0 10.3 26 99-124 32-57 (194)
203 cd03224 ABC_TM1139_LivF_branch 97.9 4.6E-05 1E-09 66.5 8.4 26 99-124 23-48 (222)
204 PRK13536 nodulation factor exp 97.9 7.1E-05 1.5E-09 69.6 10.0 46 203-258 189-234 (340)
205 PRK15079 oligopeptide ABC tran 97.9 3.5E-05 7.7E-10 71.4 7.9 46 203-257 178-223 (331)
206 cd03299 ABC_ModC_like Archeal 97.9 6.8E-05 1.5E-09 66.1 9.4 44 203-255 146-189 (235)
207 PF01695 IstB_IS21: IstB-like 97.9 6.1E-05 1.3E-09 63.4 8.6 40 100-145 45-84 (178)
208 PRK07952 DNA replication prote 97.9 9.1E-05 2E-09 65.3 10.0 36 103-144 100-135 (244)
209 cd03269 ABC_putative_ATPase Th 97.9 7.4E-05 1.6E-09 64.7 9.3 26 99-124 23-48 (210)
210 PRK13651 cobalt transporter AT 97.9 0.00013 2.8E-09 66.9 11.4 34 90-124 22-55 (305)
211 PRK13548 hmuV hemin importer A 97.9 0.00016 3.6E-09 64.7 11.8 45 203-256 157-201 (258)
212 TIGR00960 3a0501s02 Type II (G 97.9 0.00011 2.4E-09 63.9 10.5 26 99-124 26-51 (216)
213 TIGR03410 urea_trans_UrtE urea 97.9 3.6E-05 7.7E-10 67.6 7.4 45 203-256 148-192 (230)
214 TIGR01288 nodI ATP-binding ABC 97.9 8.5E-05 1.9E-09 68.1 10.1 45 203-257 152-196 (303)
215 PRK09493 glnQ glutamine ABC tr 97.9 7.2E-05 1.6E-09 66.2 9.3 27 99-125 24-50 (240)
216 PRK13638 cbiO cobalt transport 97.9 0.0001 2.2E-09 66.5 10.4 26 99-124 24-49 (271)
217 PRK13643 cbiO cobalt transport 97.9 0.00011 2.3E-09 67.0 10.5 26 99-124 29-54 (288)
218 cd03218 ABC_YhbG The ABC trans 97.9 0.00015 3.3E-09 63.7 11.2 26 99-124 23-48 (232)
219 PF05729 NACHT: NACHT domain 97.9 0.0001 2.2E-09 60.8 9.6 26 104-129 2-27 (166)
220 PRK11000 maltose/maltodextrin 97.9 7.1E-05 1.5E-09 70.5 9.5 46 203-257 150-195 (369)
221 cd03217 ABC_FeS_Assembly ABC-t 97.9 9.2E-05 2E-09 63.6 9.5 137 99-255 23-163 (200)
222 PRK11248 tauB taurine transpor 97.9 0.00031 6.7E-09 62.8 13.2 44 203-255 145-188 (255)
223 PRK13540 cytochrome c biogenes 97.9 0.00027 5.9E-09 60.6 12.4 26 99-124 24-49 (200)
224 TIGR03265 PhnT2 putative 2-ami 97.9 7.3E-05 1.6E-09 69.9 9.4 47 203-258 151-197 (353)
225 PRK13639 cbiO cobalt transport 97.9 7E-05 1.5E-09 67.7 9.0 26 99-124 25-50 (275)
226 COG2401 ABC-type ATPase fused 97.9 6.2E-05 1.3E-09 69.6 8.5 45 202-255 523-567 (593)
227 PRK08181 transposase; Validate 97.9 0.00013 2.9E-09 65.2 10.6 40 99-144 103-142 (269)
228 PRK06835 DNA replication prote 97.9 8.9E-05 1.9E-09 68.4 9.7 39 102-146 183-221 (329)
229 PRK12727 flagellar biosynthesi 97.9 0.00022 4.8E-09 68.9 12.6 44 99-146 347-390 (559)
230 PRK11300 livG leucine/isoleuci 97.9 5.8E-05 1.3E-09 67.4 8.3 44 203-255 170-213 (255)
231 COG1118 CysA ABC-type sulfate/ 97.9 0.00014 2.9E-09 64.9 10.3 50 88-145 15-64 (345)
232 COG4586 ABC-type uncharacteriz 97.9 0.00019 4.2E-09 62.9 11.0 46 203-257 173-218 (325)
233 PRK11831 putative ABC transpor 97.9 0.00024 5.3E-09 64.0 12.3 44 203-255 160-203 (269)
234 COG4598 HisP ABC-type histidin 97.9 0.00024 5.2E-09 58.5 10.8 41 99-146 29-69 (256)
235 cd03283 ABC_MutS-like MutS-lik 97.9 0.00012 2.5E-09 62.9 9.7 28 99-126 22-49 (199)
236 PF00308 Bac_DnaA: Bacterial d 97.9 0.00024 5.2E-09 61.9 11.8 108 102-257 34-141 (219)
237 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 0.00029 6.2E-09 57.1 11.5 26 99-124 23-48 (144)
238 PRK10575 iron-hydroxamate tran 97.9 0.00013 2.8E-09 65.6 10.5 44 203-255 164-207 (265)
239 PRK10908 cell division protein 97.9 0.00018 3.9E-09 62.8 11.1 26 99-124 25-50 (222)
240 PRK11144 modC molybdate transp 97.9 6.7E-05 1.5E-09 70.3 8.9 46 203-257 145-190 (352)
241 COG3839 MalK ABC-type sugar tr 97.9 0.00011 2.4E-09 67.4 9.9 40 99-145 26-65 (338)
242 PRK09452 potA putrescine/sperm 97.9 9.9E-05 2.1E-09 69.5 9.9 46 203-257 161-206 (375)
243 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.8 0.00012 2.7E-09 64.0 9.9 26 99-124 45-70 (224)
244 PRK11176 lipid transporter ATP 97.8 0.00014 3.1E-09 72.9 11.7 28 99-126 366-393 (582)
245 PRK13644 cbiO cobalt transport 97.8 9.8E-05 2.1E-09 66.7 9.5 26 99-124 25-50 (274)
246 PTZ00454 26S protease regulato 97.8 0.00014 3E-09 69.0 10.8 29 98-126 175-203 (398)
247 PRK08727 hypothetical protein; 97.8 0.00019 4E-09 63.2 11.0 38 102-145 41-78 (233)
248 cd03289 ABCC_CFTR2 The CFTR su 97.8 0.00017 3.7E-09 65.0 10.9 28 99-126 27-54 (275)
249 PRK11607 potG putrescine trans 97.8 9.5E-05 2.1E-09 69.7 9.6 47 203-258 166-212 (377)
250 PRK15112 antimicrobial peptide 97.8 0.00014 3E-09 65.5 10.3 45 203-256 166-210 (267)
251 PRK13631 cbiO cobalt transport 97.8 0.00013 2.8E-09 67.4 10.3 34 90-124 41-74 (320)
252 PRK06526 transposase; Provisio 97.8 0.00011 2.4E-09 65.3 9.5 40 99-144 95-134 (254)
253 cd03369 ABCC_NFT1 Domain 2 of 97.8 7.5E-05 1.6E-09 64.5 8.2 27 99-125 31-57 (207)
254 TIGR03258 PhnT 2-aminoethylpho 97.8 8.9E-05 1.9E-09 69.5 9.2 47 203-258 154-201 (362)
255 PRK05703 flhF flagellar biosyn 97.8 0.00026 5.5E-09 67.8 12.3 41 101-146 220-261 (424)
256 COG1129 MglA ABC-type sugar tr 97.8 0.0001 2.2E-09 70.7 9.4 51 87-145 20-70 (500)
257 PRK08116 hypothetical protein; 97.8 0.00039 8.4E-09 62.5 12.8 37 102-144 114-150 (268)
258 TIGR02142 modC_ABC molybdenum 97.8 6.7E-05 1.5E-09 70.3 8.2 46 203-257 148-193 (354)
259 PRK11889 flhF flagellar biosyn 97.8 0.00035 7.5E-09 65.2 12.6 93 102-217 241-333 (436)
260 PRK15093 antimicrobial peptide 97.8 0.00026 5.7E-09 65.7 12.0 46 203-257 175-220 (330)
261 cd03295 ABC_OpuCA_Osmoprotecti 97.8 0.00022 4.8E-09 63.2 11.1 44 203-255 152-195 (242)
262 PRK13649 cbiO cobalt transport 97.8 0.00016 3.4E-09 65.6 10.3 26 99-124 30-55 (280)
263 PRK11174 cysteine/glutathione 97.8 0.00016 3.6E-09 72.6 11.4 28 99-126 373-400 (588)
264 cd03244 ABCC_MRP_domain2 Domai 97.8 0.00011 2.5E-09 64.0 9.0 27 99-125 27-53 (221)
265 PRK13641 cbiO cobalt transport 97.8 0.00015 3.3E-09 65.9 10.1 26 99-124 30-55 (287)
266 TIGR01189 ccmA heme ABC export 97.8 0.00016 3.4E-09 62.0 9.6 26 99-124 23-48 (198)
267 COG1116 TauB ABC-type nitrate/ 97.8 0.00014 3E-09 63.2 9.1 25 99-123 26-50 (248)
268 cd03263 ABC_subfamily_A The AB 97.8 0.00016 3.5E-09 63.0 9.8 26 99-124 25-50 (220)
269 TIGR03499 FlhF flagellar biosy 97.8 0.00018 3.9E-09 65.2 10.2 43 100-146 192-234 (282)
270 PRK10418 nikD nickel transport 97.8 0.0007 1.5E-08 60.4 14.0 44 203-255 157-200 (254)
271 PRK07721 fliI flagellum-specif 97.8 0.00038 8.2E-09 66.6 12.8 58 81-147 139-196 (438)
272 COG1123 ATPase components of v 97.8 0.00023 5.1E-09 68.8 11.3 44 203-255 171-214 (539)
273 TIGR02673 FtsE cell division A 97.8 0.00015 3.2E-09 63.0 9.3 26 99-124 25-50 (214)
274 KOG0061 Transporter, ABC super 97.8 0.00015 3.2E-09 72.7 10.4 32 96-127 50-81 (613)
275 TIGR03375 type_I_sec_LssB type 97.8 0.00015 3.4E-09 74.2 10.7 27 99-125 488-514 (694)
276 PRK09984 phosphonate/organopho 97.8 0.00014 3.1E-09 65.2 9.2 45 203-256 169-213 (262)
277 cd03257 ABC_NikE_OppD_transpor 97.8 0.00022 4.8E-09 62.5 10.3 44 203-255 162-205 (228)
278 PRK11614 livF leucine/isoleuci 97.8 0.0002 4.4E-09 63.2 10.0 26 99-124 28-53 (237)
279 TIGR03797 NHPM_micro_ABC2 NHPM 97.8 0.00014 3.1E-09 74.4 10.3 40 99-145 476-515 (686)
280 TIGR02770 nickel_nikD nickel i 97.8 0.0002 4.3E-09 63.0 9.8 45 203-256 142-186 (230)
281 TIGR02769 nickel_nikE nickel i 97.8 0.0001 2.2E-09 66.2 8.2 45 203-256 167-211 (265)
282 cd03250 ABCC_MRP_domain1 Domai 97.8 0.00025 5.4E-09 61.0 10.3 27 99-125 28-54 (204)
283 TIGR02324 CP_lyasePhnL phospho 97.8 0.00037 8E-09 60.9 11.5 26 99-124 31-56 (224)
284 PRK10790 putative multidrug tr 97.8 0.00019 4.1E-09 72.2 10.9 27 99-125 364-390 (592)
285 PRK03695 vitamin B12-transport 97.8 0.00027 5.9E-09 62.8 10.7 26 99-124 19-44 (248)
286 PRK10253 iron-enterobactin tra 97.8 0.00022 4.7E-09 64.1 10.2 45 203-256 160-204 (265)
287 cd03245 ABCC_bacteriocin_expor 97.8 0.00023 4.9E-09 62.1 10.0 26 99-124 27-52 (220)
288 PRK09536 btuD corrinoid ABC tr 97.8 0.00013 2.9E-09 69.2 9.1 26 99-124 26-51 (402)
289 cd01132 F1_ATPase_alpha F1 ATP 97.7 0.00014 3E-09 64.8 8.5 58 81-146 50-107 (274)
290 COG1222 RPT1 ATP-dependent 26S 97.7 0.00032 7E-09 63.8 10.9 112 98-252 181-296 (406)
291 PF08433 KTI12: Chromatin asso 97.7 0.00016 3.5E-09 64.8 9.1 35 104-144 3-37 (270)
292 TIGR02868 CydC thiol reductant 97.7 0.00016 3.5E-09 71.6 10.0 27 99-125 358-384 (529)
293 PRK10419 nikE nickel transport 97.7 0.00013 2.8E-09 65.7 8.5 45 203-256 168-212 (268)
294 PRK13543 cytochrome c biogenes 97.7 0.00024 5.1E-09 61.7 9.8 26 99-124 34-59 (214)
295 PRK06921 hypothetical protein; 97.7 0.00045 9.8E-09 61.9 11.6 39 101-144 116-154 (266)
296 TIGR03740 galliderm_ABC gallid 97.7 0.00015 3.2E-09 63.4 8.3 26 99-124 23-48 (223)
297 PRK10895 lipopolysaccharide AB 97.7 0.00063 1.4E-08 60.2 12.4 27 99-125 26-52 (241)
298 PF01637 Arch_ATPase: Archaeal 97.7 0.00012 2.6E-09 64.0 7.7 150 90-253 10-163 (234)
299 PRK11264 putative amino-acid A 97.7 0.00036 7.8E-09 62.1 10.8 26 99-124 26-51 (250)
300 PRK13657 cyclic beta-1,2-gluca 97.7 0.00025 5.5E-09 71.2 10.9 27 99-125 358-384 (588)
301 cd01128 rho_factor Transcripti 97.7 0.00037 8E-09 61.7 10.6 37 89-127 5-41 (249)
302 TIGR03689 pup_AAA proteasome A 97.7 0.00023 4.9E-09 69.2 10.0 31 98-128 212-242 (512)
303 COG4175 ProV ABC-type proline/ 97.7 0.0013 2.7E-08 59.1 13.7 154 83-257 39-226 (386)
304 TIGR03771 anch_rpt_ABC anchore 97.7 0.00022 4.9E-09 62.3 9.1 27 99-125 3-29 (223)
305 COG2274 SunT ABC-type bacterio 97.7 0.00026 5.7E-09 71.7 10.7 41 98-145 495-535 (709)
306 PRK10261 glutathione transport 97.7 0.00015 3.3E-09 73.2 9.1 46 203-257 480-525 (623)
307 cd03297 ABC_ModC_molybdenum_tr 97.7 0.00022 4.9E-09 61.8 9.0 45 203-256 148-192 (214)
308 TIGR03522 GldA_ABC_ATP gliding 97.7 0.00023 5.1E-09 65.2 9.5 26 99-124 25-50 (301)
309 PRK13546 teichoic acids export 97.7 0.00028 6E-09 63.4 9.8 26 99-124 47-72 (264)
310 cd03280 ABC_MutS2 MutS2 homolo 97.7 0.00014 3E-09 62.5 7.5 28 99-126 24-52 (200)
311 TIGR03411 urea_trans_UrtD urea 97.7 0.0002 4.3E-09 63.4 8.7 27 99-125 25-51 (242)
312 PRK08939 primosomal protein Dn 97.7 0.00066 1.4E-08 62.1 12.3 38 101-144 155-192 (306)
313 COG1134 TagH ABC-type polysacc 97.7 0.00036 7.8E-09 60.4 9.8 43 88-133 40-82 (249)
314 PRK10619 histidine/lysine/argi 97.7 0.00032 6.9E-09 62.7 10.0 27 99-125 28-54 (257)
315 cd03248 ABCC_TAP TAP, the Tran 97.7 0.00068 1.5E-08 59.3 11.9 26 99-124 37-62 (226)
316 PRK13547 hmuV hemin importer A 97.7 0.00053 1.1E-08 61.8 11.4 44 203-255 171-214 (272)
317 cd03252 ABCC_Hemolysin The ABC 97.7 0.00044 9.5E-09 61.0 10.7 27 99-125 25-51 (237)
318 PRK08084 DNA replication initi 97.7 0.00047 1E-08 60.7 10.8 38 102-145 45-82 (235)
319 TIGR02203 MsbA_lipidA lipid A 97.7 0.00038 8.2E-09 69.7 11.3 28 99-126 355-382 (571)
320 COG2087 CobU Adenosyl cobinami 97.7 0.00049 1.1E-08 55.8 9.7 127 104-258 2-133 (175)
321 TIGR03796 NHPM_micro_ABC1 NHPM 97.7 0.0003 6.6E-09 72.3 10.9 28 99-126 502-529 (710)
322 TIGR02857 CydD thiol reductant 97.7 0.00034 7.4E-09 69.4 10.9 27 99-125 345-371 (529)
323 TIGR03873 F420-0_ABC_ATP propo 97.7 0.00032 7E-09 62.6 9.8 26 99-124 24-49 (256)
324 TIGR00750 lao LAO/AO transport 97.7 0.00038 8.3E-09 63.7 10.3 43 99-147 31-73 (300)
325 cd03271 ABC_UvrA_II The excisi 97.7 0.00095 2.1E-08 59.6 12.5 28 99-126 18-45 (261)
326 cd03251 ABCC_MsbA MsbA is an e 97.7 0.00033 7.2E-09 61.6 9.6 27 99-125 25-51 (234)
327 PRK09376 rho transcription ter 97.6 0.00045 9.7E-09 64.4 10.6 44 83-128 152-195 (416)
328 TIGR01193 bacteriocin_ABC ABC- 97.6 0.00032 7E-09 72.0 10.8 27 99-125 497-523 (708)
329 COG3840 ThiQ ABC-type thiamine 97.6 0.00083 1.8E-08 55.5 10.9 41 99-146 22-62 (231)
330 TIGR02546 III_secr_ATP type II 97.6 0.00035 7.5E-09 66.7 10.2 44 81-126 126-169 (422)
331 PRK06731 flhF flagellar biosyn 97.6 0.0019 4.1E-08 57.9 14.2 94 101-217 74-167 (270)
332 TIGR02204 MsbA_rel ABC transpo 97.6 0.00039 8.5E-09 69.7 11.1 28 99-126 363-390 (576)
333 PF02283 CobU: Cobinamide kina 97.6 5.1E-05 1.1E-09 62.9 3.9 123 105-257 1-126 (167)
334 cd03253 ABCC_ATM1_transporter 97.6 0.00073 1.6E-08 59.6 11.5 27 99-125 24-50 (236)
335 PTZ00361 26 proteosome regulat 97.6 0.00036 7.7E-09 66.8 10.0 29 98-126 213-241 (438)
336 COG1245 Predicted ATPase, RNas 97.6 0.00032 7E-09 65.7 9.3 141 97-255 362-515 (591)
337 TIGR00767 rho transcription te 97.6 0.00042 9E-09 64.9 10.1 40 87-128 155-194 (415)
338 PRK13409 putative ATPase RIL; 97.6 0.00051 1.1E-08 68.7 11.5 44 203-255 470-513 (590)
339 cd03233 ABC_PDR_domain1 The pl 97.6 0.00035 7.6E-09 60.1 9.1 27 99-125 30-56 (202)
340 PRK06893 DNA replication initi 97.6 0.00053 1.1E-08 60.2 10.4 37 103-145 40-76 (229)
341 PRK11124 artP arginine transpo 97.6 0.00067 1.5E-08 60.0 11.2 26 99-124 25-50 (242)
342 cd03227 ABC_Class2 ABC-type Cl 97.6 0.0013 2.7E-08 54.5 12.1 28 101-128 20-47 (162)
343 cd01133 F1-ATPase_beta F1 ATP 97.6 0.00054 1.2E-08 61.1 10.4 58 81-145 50-107 (274)
344 cd03254 ABCC_Glucan_exporter_l 97.6 0.00049 1.1E-08 60.3 10.2 27 99-125 26-52 (229)
345 COG4615 PvdE ABC-type sideroph 97.6 0.0011 2.4E-08 61.2 12.3 141 98-257 345-510 (546)
346 COG4674 Uncharacterized ABC-ty 97.6 3.7E-05 8E-10 64.0 2.7 38 87-125 17-54 (249)
347 COG4555 NatA ABC-type Na+ tran 97.6 0.00086 1.9E-08 56.3 10.7 55 84-146 11-65 (245)
348 PRK13541 cytochrome c biogenes 97.6 0.001 2.3E-08 56.8 11.8 26 99-124 23-48 (195)
349 PF13245 AAA_19: Part of AAA d 97.6 0.00011 2.4E-09 52.3 4.8 43 102-146 10-52 (76)
350 PRK10261 glutathione transport 97.6 0.0006 1.3E-08 68.9 11.8 45 203-256 185-229 (623)
351 COG4172 ABC-type uncharacteriz 97.6 0.00055 1.2E-08 63.3 10.2 43 204-255 444-486 (534)
352 PRK14271 phosphate ABC transpo 97.6 0.00067 1.5E-08 61.3 10.9 27 99-125 44-70 (276)
353 PF09807 DUF2348: Uncharacteri 97.6 0.0039 8.5E-08 55.2 15.4 158 88-257 2-184 (249)
354 PRK05642 DNA replication initi 97.6 0.0005 1.1E-08 60.6 9.7 37 103-145 46-82 (234)
355 KOG0734 AAA+-type ATPase conta 97.6 0.00012 2.6E-09 69.6 6.0 30 95-126 332-361 (752)
356 PRK15439 autoinducer 2 ABC tra 97.6 0.00033 7.2E-09 69.1 9.5 45 203-257 157-201 (510)
357 TIGR01194 cyc_pep_trnsptr cycl 97.6 0.00074 1.6E-08 67.4 12.0 40 99-145 365-404 (555)
358 PRK09700 D-allose transporter 97.6 0.00038 8.3E-09 68.7 9.9 45 203-257 162-206 (510)
359 PRK09099 type III secretion sy 97.6 0.00024 5.3E-09 67.7 8.1 44 81-126 144-187 (441)
360 PF01580 FtsK_SpoIIIE: FtsK/Sp 97.6 0.00012 2.7E-09 63.0 5.7 169 82-256 18-203 (205)
361 cd03290 ABCC_SUR1_N The SUR do 97.6 0.00063 1.4E-08 59.2 10.2 27 99-125 24-50 (218)
362 PRK15056 manganese/iron transp 97.6 0.00046 1E-08 62.3 9.5 26 99-124 30-55 (272)
363 PF00931 NB-ARC: NB-ARC domain 97.6 0.00023 4.9E-09 64.6 7.6 121 100-256 17-139 (287)
364 PRK09580 sufC cysteine desulfu 97.6 0.00082 1.8E-08 59.7 11.1 27 99-125 24-50 (248)
365 COG4181 Predicted ABC-type tra 97.6 0.00069 1.5E-08 55.4 9.3 44 203-255 163-206 (228)
366 PRK03992 proteasome-activating 97.6 0.00062 1.3E-08 64.7 10.6 29 98-126 161-189 (389)
367 cd03260 ABC_PstB_phosphate_tra 97.6 0.00095 2.1E-08 58.4 11.1 28 99-126 23-50 (227)
368 COG3854 SpoIIIAA ncharacterize 97.6 0.00064 1.4E-08 58.2 9.4 121 99-257 133-254 (308)
369 PF00006 ATP-synt_ab: ATP synt 97.6 0.00049 1.1E-08 59.5 9.0 51 86-146 1-51 (215)
370 cd03264 ABC_drug_resistance_li 97.6 0.00063 1.4E-08 58.9 9.8 25 99-124 23-47 (211)
371 PRK12723 flagellar biosynthesi 97.6 0.00077 1.7E-08 63.5 10.9 43 102-146 174-216 (388)
372 PRK11160 cysteine/glutathione 97.5 0.00052 1.1E-08 68.7 10.4 28 99-126 363-390 (574)
373 KOG0736 Peroxisome assembly fa 97.5 0.00071 1.5E-08 67.2 10.9 121 94-257 697-820 (953)
374 KOG0744 AAA+-type ATPase [Post 97.5 8.3E-05 1.8E-09 66.5 4.1 132 99-260 174-311 (423)
375 TIGR01842 type_I_sec_PrtD type 97.5 0.00069 1.5E-08 67.4 11.2 28 99-126 341-368 (544)
376 cd03236 ABC_RNaseL_inhibitor_d 97.5 0.0014 3E-08 58.5 12.1 34 90-125 16-49 (255)
377 PRK11231 fecE iron-dicitrate t 97.5 0.00042 9.1E-09 61.9 8.7 26 99-124 25-50 (255)
378 PLN00020 ribulose bisphosphate 97.5 0.0013 2.9E-08 60.7 11.9 84 97-219 143-227 (413)
379 TIGR03269 met_CoM_red_A2 methy 97.5 0.00065 1.4E-08 67.2 10.8 46 203-257 185-230 (520)
380 PRK07594 type III secretion sy 97.5 0.00023 5E-09 67.6 7.1 42 81-124 136-177 (433)
381 cd03243 ABC_MutS_homologs The 97.5 0.00068 1.5E-08 58.3 9.4 27 101-127 28-54 (202)
382 CHL00059 atpA ATP synthase CF1 97.5 0.00056 1.2E-08 65.5 9.5 58 81-146 122-179 (485)
383 TIGR01243 CDC48 AAA family ATP 97.5 0.00054 1.2E-08 70.6 10.1 29 98-126 208-236 (733)
384 PRK10762 D-ribose transporter 97.5 0.00079 1.7E-08 66.3 11.0 45 203-257 158-202 (501)
385 KOG0733 Nuclear AAA ATPase (VC 97.5 0.00026 5.6E-09 68.5 7.1 116 98-258 219-339 (802)
386 PLN03130 ABC transporter C fam 97.5 0.00047 1E-08 76.5 10.3 40 99-145 1262-1301(1622)
387 TIGR01846 type_I_sec_HlyB type 97.5 0.00075 1.6E-08 69.2 11.1 40 99-145 480-519 (694)
388 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.5 0.0017 3.7E-08 57.3 12.1 27 99-125 26-52 (238)
389 cd03234 ABCG_White The White s 97.5 0.00085 1.8E-08 58.8 10.0 27 99-125 30-56 (226)
390 PRK15134 microcin C ABC transp 97.5 0.0014 3.1E-08 65.0 12.7 46 203-257 173-218 (529)
391 PRK00411 cdc6 cell division co 97.5 0.001 2.2E-08 63.4 11.3 41 103-147 56-96 (394)
392 PRK08233 hypothetical protein; 97.5 0.00048 1E-08 58.0 8.0 25 102-126 3-27 (182)
393 COG0396 sufC Cysteine desulfur 97.5 0.00095 2.1E-08 57.2 9.6 27 99-125 27-53 (251)
394 PRK11288 araG L-arabinose tran 97.5 0.00066 1.4E-08 66.9 10.1 27 98-124 26-52 (501)
395 PRK10789 putative multidrug tr 97.5 0.00091 2E-08 66.9 11.2 28 99-126 338-365 (569)
396 PRK13545 tagH teichoic acids e 97.5 0.00084 1.8E-08 65.3 10.3 27 98-124 46-72 (549)
397 TIGR01192 chvA glucan exporter 97.5 0.00081 1.8E-08 67.5 10.7 27 99-125 358-384 (585)
398 PRK10522 multidrug transporter 97.5 0.0009 1.9E-08 66.7 10.9 26 99-124 346-371 (547)
399 PRK14258 phosphate ABC transpo 97.5 0.0021 4.5E-08 57.6 12.2 27 99-125 30-56 (261)
400 TIGR01241 FtsH_fam ATP-depende 97.5 0.0002 4.4E-09 70.3 6.1 108 105-255 91-202 (495)
401 PRK14269 phosphate ABC transpo 97.5 0.001 2.3E-08 59.0 10.2 27 99-125 25-51 (246)
402 PLN03232 ABC transporter C fam 97.5 0.00054 1.2E-08 75.7 10.0 40 99-145 1259-1298(1495)
403 PRK05986 cob(I)alamin adenolsy 97.5 0.0029 6.2E-08 53.3 12.1 130 101-254 21-156 (191)
404 TIGR03015 pepcterm_ATPase puta 97.5 0.0012 2.6E-08 59.4 10.6 29 99-127 39-68 (269)
405 cd01134 V_A-ATPase_A V/A-type 97.5 0.00092 2E-08 61.4 9.8 56 81-146 138-193 (369)
406 COG1484 DnaC DNA replication p 97.4 0.0017 3.6E-08 57.8 11.2 41 99-145 102-142 (254)
407 CHL00195 ycf46 Ycf46; Provisio 97.4 0.0015 3.3E-08 63.4 11.8 29 98-126 255-283 (489)
408 PRK14723 flhF flagellar biosyn 97.4 0.0011 2.4E-08 67.1 11.1 44 99-146 182-225 (767)
409 COG4161 ArtP ABC-type arginine 97.4 0.002 4.3E-08 52.2 10.3 25 99-123 25-49 (242)
410 PRK10938 putative molybdenum t 97.4 0.00086 1.9E-08 65.8 10.2 45 203-257 152-196 (490)
411 cd00561 CobA_CobO_BtuR ATP:cor 97.4 0.0026 5.7E-08 52.1 11.3 128 104-255 4-137 (159)
412 PRK13549 xylose transporter AT 97.4 0.00082 1.8E-08 66.3 10.0 26 99-124 28-53 (506)
413 TIGR00962 atpA proton transloc 97.4 0.00073 1.6E-08 65.6 9.3 58 81-146 142-199 (501)
414 PRK14086 dnaA chromosomal repl 97.4 0.0012 2.5E-08 65.3 10.7 40 103-146 315-354 (617)
415 PRK10982 galactose/methyl gala 97.4 0.00083 1.8E-08 66.0 9.8 26 99-124 21-46 (491)
416 COG0541 Ffh Signal recognition 97.4 0.013 2.9E-07 54.9 17.0 94 100-216 98-194 (451)
417 cd03291 ABCC_CFTR1 The CFTR su 97.4 0.0041 8.9E-08 56.4 13.5 26 99-124 60-85 (282)
418 PRK13343 F0F1 ATP synthase sub 97.4 0.00081 1.8E-08 65.0 9.4 58 81-146 143-200 (502)
419 TIGR01242 26Sp45 26S proteasom 97.4 0.001 2.2E-08 62.7 10.0 29 98-126 152-180 (364)
420 PRK06793 fliI flagellum-specif 97.4 0.00059 1.3E-08 64.9 8.2 57 82-147 138-194 (432)
421 PRK09700 D-allose transporter 97.4 0.0014 3.1E-08 64.6 11.4 26 99-124 286-311 (510)
422 PRK06936 type III secretion sy 97.4 0.00044 9.6E-09 65.7 7.4 44 81-126 143-186 (439)
423 TIGR01039 atpD ATP synthase, F 97.4 0.001 2.2E-08 63.5 9.8 57 81-144 124-180 (461)
424 PRK15134 microcin C ABC transp 97.4 0.00051 1.1E-08 68.1 8.1 44 203-255 442-485 (529)
425 PRK08472 fliI flagellum-specif 97.4 0.0011 2.3E-08 63.2 9.8 44 81-126 138-181 (434)
426 PTZ00243 ABC transporter; Prov 97.4 0.0008 1.7E-08 74.5 10.3 40 99-145 1333-1372(1560)
427 PRK00889 adenylylsulfate kinas 97.4 0.00026 5.7E-09 59.3 5.2 40 100-145 2-41 (175)
428 COG4172 ABC-type uncharacteriz 97.4 0.002 4.4E-08 59.7 11.1 44 203-255 174-217 (534)
429 cd03288 ABCC_SUR2 The SUR doma 97.4 0.0017 3.6E-08 58.1 10.7 27 99-125 44-70 (257)
430 PRK06820 type III secretion sy 97.4 0.00053 1.1E-08 65.4 7.7 43 81-125 144-186 (440)
431 PRK13768 GTPase; Provisional 97.4 0.0008 1.7E-08 60.0 8.4 39 103-147 3-41 (253)
432 COG4178 ABC-type uncharacteriz 97.4 0.0024 5.2E-08 62.8 12.2 142 98-257 415-575 (604)
433 PRK05922 type III secretion sy 97.4 0.00076 1.7E-08 64.1 8.6 44 81-126 138-181 (434)
434 PF13207 AAA_17: AAA domain; P 97.4 0.00024 5.3E-09 55.5 4.4 23 104-126 1-23 (121)
435 TIGR00957 MRP_assoc_pro multi 97.4 0.001 2.2E-08 73.8 10.6 40 99-145 1309-1348(1522)
436 COG1618 Predicted nucleotide k 97.4 0.0021 4.6E-08 52.0 9.6 24 104-127 7-30 (179)
437 PRK12608 transcription termina 97.4 0.0017 3.6E-08 60.4 10.3 42 85-128 118-159 (380)
438 TIGR01271 CFTR_protein cystic 97.3 0.0011 2.4E-08 73.3 10.7 39 99-145 1242-1280(1490)
439 PF04665 Pox_A32: Poxvirus A32 97.3 0.0024 5.3E-08 55.9 10.8 118 104-260 15-142 (241)
440 TIGR03497 FliI_clade2 flagella 97.3 0.00059 1.3E-08 64.8 7.5 42 82-125 119-160 (413)
441 COG0488 Uup ATPase components 97.3 0.0014 3E-08 64.2 10.3 140 98-257 344-497 (530)
442 TIGR03269 met_CoM_red_A2 methy 97.3 0.0025 5.3E-08 63.1 12.2 45 203-256 444-488 (520)
443 cd03114 ArgK-like The function 97.3 0.0006 1.3E-08 55.5 6.5 36 105-146 2-37 (148)
444 TIGR00362 DnaA chromosomal rep 97.3 0.0018 3.9E-08 62.0 10.8 40 102-145 136-175 (405)
445 COG4618 ArpD ABC-type protease 97.3 0.00045 9.8E-09 65.6 6.4 28 99-126 359-386 (580)
446 PRK07165 F0F1 ATP synthase sub 97.3 0.0014 3.1E-08 63.1 10.0 58 81-146 124-181 (507)
447 COG4148 ModC ABC-type molybdat 97.3 0.0014 3.1E-08 57.8 9.0 46 204-258 146-191 (352)
448 PRK14087 dnaA chromosomal repl 97.3 0.0025 5.4E-08 61.6 11.7 40 103-146 142-181 (450)
449 COG1132 MdlB ABC-type multidru 97.3 0.0018 3.8E-08 64.9 11.0 28 99-126 352-379 (567)
450 PRK08972 fliI flagellum-specif 97.3 0.00072 1.6E-08 64.2 7.7 42 81-124 143-184 (444)
451 KOG0735 AAA+-type ATPase [Post 97.3 0.0036 7.9E-08 61.8 12.5 118 98-255 428-550 (952)
452 PRK09435 membrane ATPase/prote 97.3 0.0014 3E-08 60.5 9.2 94 101-216 55-160 (332)
453 COG4988 CydD ABC-type transpor 97.3 0.0028 6.1E-08 61.4 11.5 27 99-125 344-370 (559)
454 PRK12678 transcription termina 97.3 0.0021 4.5E-08 62.7 10.5 45 82-128 398-442 (672)
455 COG1474 CDC6 Cdc6-related prot 97.3 0.0041 9E-08 58.3 12.4 104 91-219 33-138 (366)
456 TIGR03324 alt_F1F0_F1_al alter 97.3 0.0015 3.2E-08 63.0 9.5 58 81-146 143-200 (497)
457 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.0047 1E-07 53.8 11.9 30 99-128 28-57 (222)
458 TIGR00958 3a01208 Conjugate Tr 97.3 0.0016 3.5E-08 66.9 10.4 28 99-126 504-531 (711)
459 CHL00176 ftsH cell division pr 97.3 0.00067 1.5E-08 68.1 7.4 33 103-144 217-249 (638)
460 TIGR02858 spore_III_AA stage I 97.3 0.0021 4.6E-08 57.6 9.8 36 90-127 101-136 (270)
461 PRK09280 F0F1 ATP synthase sub 97.3 0.0015 3.3E-08 62.5 9.4 57 81-144 125-181 (463)
462 PTZ00265 multidrug resistance 97.3 0.002 4.3E-08 71.0 11.5 28 99-126 1191-1218(1466)
463 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0024 5.1E-08 62.1 10.5 113 98-253 541-654 (802)
464 PRK14088 dnaA chromosomal repl 97.3 0.0022 4.8E-08 61.9 10.5 39 103-145 131-169 (440)
465 TIGR01243 CDC48 AAA family ATP 97.3 0.0016 3.4E-08 67.2 10.0 29 98-126 483-511 (733)
466 PRK06995 flhF flagellar biosyn 97.3 0.0073 1.6E-07 58.4 13.8 43 100-146 254-296 (484)
467 PTZ00265 multidrug resistance 97.3 0.0028 6E-08 69.9 12.3 28 99-126 408-435 (1466)
468 cd03278 ABC_SMC_barmotin Barmo 97.2 0.0081 1.8E-07 51.4 12.8 25 99-124 20-44 (197)
469 TIGR00955 3a01204 The Eye Pigm 97.2 0.0021 4.5E-08 64.9 10.6 35 90-125 40-74 (617)
470 PRK06002 fliI flagellum-specif 97.2 0.001 2.2E-08 63.4 7.8 42 81-124 146-187 (450)
471 TIGR01026 fliI_yscN ATPase Fli 97.2 0.0011 2.4E-08 63.5 8.1 43 81-125 144-186 (440)
472 PRK12597 F0F1 ATP synthase sub 97.2 0.0016 3.5E-08 62.5 9.1 57 81-144 124-180 (461)
473 PRK05688 fliI flagellum-specif 97.2 0.00095 2.1E-08 63.7 7.4 42 81-124 149-190 (451)
474 PRK15439 autoinducer 2 ABC tra 97.2 0.0033 7.2E-08 62.1 11.5 26 99-124 286-311 (510)
475 PRK09183 transposase/IS protei 97.2 0.00042 9.2E-09 61.9 4.7 41 99-145 99-139 (259)
476 cd01136 ATPase_flagellum-secre 97.2 0.0015 3.2E-08 60.0 8.3 43 81-125 50-92 (326)
477 KOG0727 26S proteasome regulat 97.2 0.0025 5.4E-08 55.3 9.0 113 98-253 185-301 (408)
478 COG0552 FtsY Signal recognitio 97.2 0.0089 1.9E-07 54.3 12.9 98 101-218 138-235 (340)
479 TIGR02633 xylG D-xylose ABC tr 97.2 0.0017 3.8E-08 63.9 9.3 26 99-124 24-49 (500)
480 KOG0058 Peptide exporter, ABC 97.2 0.0044 9.6E-08 61.5 11.8 36 90-126 483-518 (716)
481 PRK08927 fliI flagellum-specif 97.2 0.0014 3E-08 62.5 8.1 44 81-126 139-182 (442)
482 PRK09281 F0F1 ATP synthase sub 97.2 0.0019 4E-08 62.8 9.1 58 81-146 143-200 (502)
483 COG4559 ABC-type hemin transpo 97.2 0.01 2.2E-07 50.5 12.2 29 99-127 24-52 (259)
484 KOG0739 AAA+-type ATPase [Post 97.2 0.0046 1E-07 55.0 10.6 104 63-219 137-240 (439)
485 PRK10535 macrolide transporter 97.2 0.0013 2.8E-08 66.8 8.3 27 99-125 31-57 (648)
486 PRK05541 adenylylsulfate kinas 97.2 0.00062 1.3E-08 57.1 5.1 40 99-144 4-43 (176)
487 PRK07003 DNA polymerase III su 97.2 0.0041 8.8E-08 62.7 11.4 29 100-128 36-64 (830)
488 PF09848 DUF2075: Uncharacteri 97.2 0.0038 8.3E-08 58.5 10.9 42 103-148 2-43 (352)
489 PRK11147 ABC transporter ATPas 97.2 0.0044 9.4E-08 62.9 12.0 26 99-124 342-367 (635)
490 TIGR03498 FliI_clade3 flagella 97.2 0.0012 2.5E-08 62.8 7.3 43 81-125 121-163 (418)
491 PRK08699 DNA polymerase III su 97.2 0.0075 1.6E-07 55.7 12.5 29 100-128 19-47 (325)
492 TIGR00954 3a01203 Peroxysomal 97.2 0.0059 1.3E-07 62.2 12.9 27 99-125 475-501 (659)
493 COG1101 PhnK ABC-type uncharac 97.2 0.0041 9E-08 52.9 9.6 42 98-146 28-69 (263)
494 cd01135 V_A-ATPase_B V/A-type 97.2 0.0028 6.1E-08 56.5 9.2 62 81-146 50-111 (276)
495 TIGR03305 alt_F1F0_F1_bet alte 97.1 0.0026 5.6E-08 60.8 9.4 57 81-144 119-175 (449)
496 PRK13695 putative NTPase; Prov 97.1 0.0011 2.3E-08 55.6 6.2 23 104-126 2-24 (174)
497 TIGR03496 FliI_clade1 flagella 97.1 0.0012 2.5E-08 62.8 7.1 42 81-124 118-159 (411)
498 cd01131 PilT Pilus retraction 97.1 0.0035 7.5E-08 53.7 9.5 24 104-127 3-26 (198)
499 PRK13409 putative ATPase RIL; 97.1 0.0042 9.1E-08 62.2 11.4 44 203-257 229-272 (590)
500 PTZ00185 ATPase alpha subunit; 97.1 0.0027 5.9E-08 61.1 9.4 64 81-146 170-235 (574)
No 1
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=100.00 E-value=2.3e-52 Score=381.03 Aligned_cols=306 Identities=24% Similarity=0.295 Sum_probs=265.8
Q ss_pred ccccCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcccCCCCCC
Q 035774 6 ISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLP 85 (357)
Q Consensus 6 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (357)
+..+++++.+.++|+++|++|+++++..++.+|.++.+++++++.++++.+.+.++.++.++.++++++.+ ..+++
T Consensus 34 l~~~g~~~~~~~kL~~~g~~tv~~~~~~~~~~L~~~~g~s~~~~~ki~~~a~~~~~~~~~ta~~~~~~~~~----~~~is 109 (344)
T PLN03187 34 LISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLLNQGFITGSDALLKRKS----VVRIT 109 (344)
T ss_pred HhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhhcccCCcHHHHHhhhcc----Cceec
Confidence 45578999999999999999999999999999999999999999999999998888899999999987533 56899
Q ss_pred CCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhh
Q 035774 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165 (357)
Q Consensus 86 TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~ 165 (357)
||+++||++|+||+++|.+++|+|+||+|||+||+|++.+++++...||.+++|+|||+|++|+++|+.++++..
T Consensus 110 TG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~----- 184 (344)
T PLN03187 110 TGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERF----- 184 (344)
T ss_pred CCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHc-----
Confidence 999999999999999999999999999999999999999999887777778999999999999999999988641
Q ss_pred cccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCC---CCChHHHHHHHHHHHHHH
Q 035774 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLA 242 (357)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~---~~r~~~~~~i~~~Lk~la 242 (357)
..+ .+..++++++.++.+.+++..++..+...+.+.++++|||||++++++.++.+. ..|++.+.++++.|+++|
T Consensus 185 g~d--~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA 262 (344)
T PLN03187 185 GMD--ADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIA 262 (344)
T ss_pred CCC--hhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHH
Confidence 111 235678899999999999888888887778788999999999999998755432 235566889999999999
Q ss_pred HHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-CCeEEEEEEeCCC
Q 035774 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK-SGQRFMNVEKSPT 321 (357)
Q Consensus 243 ~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~-~~~R~l~v~K~r~ 321 (357)
+++|++||+|||++.+.+.. .. +....+|++|.+|+|.+++|++|++. +..|.++|+|+|+
T Consensus 263 ~~~~vavvvTNqv~~~~~~~-~~-----------------~~~~~~pagG~~~~h~~~~Rl~l~k~~~~~R~~~v~ksp~ 324 (344)
T PLN03187 263 EEFNVAVYMTNQVIADPGGG-MF-----------------ISDPKKPAGGHVLAHAATIRLMLRKGKGEQRVCKVFDAPN 324 (344)
T ss_pred HHcCCEEEEEecEEEcCCcc-cc-----------------cCCCCCCCCchhhheeeeEEEEEEcCCCCeEEEEEEECCC
Confidence 99999999999998765411 11 11224699999999999999999985 5689999999999
Q ss_pred CCCceeEEEEcCCCceecc
Q 035774 322 SPPLAFSFTINPSGISLLT 340 (357)
Q Consensus 322 ~~~~~~~f~I~~~Gi~~~~ 340 (357)
.|...+.|.|+++||....
T Consensus 325 lp~~~~~f~It~~GI~d~~ 343 (344)
T PLN03187 325 LPEAEAEFQITSGGIMDAK 343 (344)
T ss_pred CCCceEEEEEeCCCccCCC
Confidence 9999999999999998754
No 2
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=100.00 E-value=5.5e-52 Score=376.59 Aligned_cols=305 Identities=25% Similarity=0.330 Sum_probs=264.7
Q ss_pred ccccCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcccCCCCCC
Q 035774 6 ISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLP 85 (357)
Q Consensus 6 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (357)
+..+++++..+++|+++|+.|+++++..++.+|.++.+++++++.++++++.+.....+.+|.++++++.+ ..+++
T Consensus 4 ~~~~g~~~~~~~~L~~~g~~t~~~~~~~~~~~L~~~~gls~~~~~~i~~~~~~~~~~~~~ta~~~~~~~~~----~~~is 79 (313)
T TIGR02238 4 LQAHGINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAASKIINPGFITAFEISQKRKK----VLKIT 79 (313)
T ss_pred hhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHhhhcccCccHHHHHHhhcc----CceeC
Confidence 34678999999999999999999999999999999999999999999999998888889999999887543 56899
Q ss_pred CCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhh
Q 035774 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165 (357)
Q Consensus 86 TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~ 165 (357)
||++.||.+|+||+++|.+++|+|+||+|||+||+|++.+++++...|+.+++|+|||+|++|+++|+.++++..
T Consensus 80 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~----- 154 (313)
T TIGR02238 80 TGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERF----- 154 (313)
T ss_pred CCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHc-----
Confidence 999999999999999999999999999999999999999998876677778999999999999999999988652
Q ss_pred cccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCC---CCChHHHHHHHHHHHHHH
Q 035774 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLA 242 (357)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~---~~r~~~~~~i~~~Lk~la 242 (357)
..+ .+..++++++.++.+.++..+.+..+...+.+.++++|||||++++++.++.+. ..|++.+.+++..|+++|
T Consensus 155 g~d--~~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la 232 (313)
T TIGR02238 155 GVD--PDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKIS 232 (313)
T ss_pred CCC--hHHhcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHH
Confidence 111 245678899999999999988888888888778999999999999998755432 224556888999999999
Q ss_pred HHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-CCeEEEEEEeCCC
Q 035774 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK-SGQRFMNVEKSPT 321 (357)
Q Consensus 243 ~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~-~~~R~l~v~K~r~ 321 (357)
+++|++||+|||++.+.+.. .+|. ....+|++|..|+|.+++|++|++. +..|.++|+|+|+
T Consensus 233 ~~~~vavvitNqv~~~~~~~-~~~~----------------~~~~~p~gG~~~~h~~~~Rl~l~k~~~~~R~~~~~~sp~ 295 (313)
T TIGR02238 233 EEFNVAVFVTNQVQADPGAT-MTFI----------------ADPKKPIGGHVLAHASTTRILLRKGRGEERVAKLYDSPD 295 (313)
T ss_pred HHcCcEEEEECceEecCCcc-cccC----------------CCCccCcchhhhhhheeEEEEEEecCCCeEEEEEeeCCC
Confidence 99999999999998865421 1110 1245799999999999999999995 6789999999999
Q ss_pred CCCceeEEEEcCCCcee
Q 035774 322 SPPLAFSFTINPSGISL 338 (357)
Q Consensus 322 ~~~~~~~f~I~~~Gi~~ 338 (357)
.|...+.|.|+++||..
T Consensus 296 ~p~~~~~f~i~~~Gi~~ 312 (313)
T TIGR02238 296 MPEAEASFQITEGGIAD 312 (313)
T ss_pred CCCeEEEEEEeCCcccC
Confidence 99999999999999975
No 3
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=100.00 E-value=6.9e-50 Score=365.42 Aligned_cols=307 Identities=25% Similarity=0.343 Sum_probs=262.6
Q ss_pred ccccCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcccCCCCCC
Q 035774 6 ISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLP 85 (357)
Q Consensus 6 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (357)
+...++++..+++|+++|+.|+++++..++.+|.++.++++.++.+++..+.+.+...+.++.++++.+.. ..+++
T Consensus 31 l~~~gi~~~~i~kL~~~g~~T~~~~~~~~~~~L~~i~~is~~~~~~~~~~~~~~~~~~~~ta~~~~~~~~~----~~~i~ 106 (342)
T PLN03186 31 LQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEAASKLVPLGFTTASQLHAQRQE----IIQIT 106 (342)
T ss_pred HHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhcccccchHHHHhhcccC----cceeC
Confidence 34578999999999999999999999999999999999999999999999988888899999888876432 67899
Q ss_pred CCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhh
Q 035774 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165 (357)
Q Consensus 86 TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~ 165 (357)
||+++||.+|+||+++|++++|+|+||+|||+||++++.+++++...||.+++|+|||+|++|+++|+.++++..
T Consensus 107 tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~----- 181 (342)
T PLN03186 107 TGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERF----- 181 (342)
T ss_pred CCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHc-----
Confidence 999999999999999999999999999999999999999988876667677899999999999999999998652
Q ss_pred cccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCC---CChHHHHHHHHHHHHHH
Q 035774 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLA 242 (357)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~---~r~~~~~~i~~~Lk~la 242 (357)
... .+..++++++.++.+.+++..++..+...+...++++|||||++++++.++.+.. .|+..+.++++.|+++|
T Consensus 182 ~~~--~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA 259 (342)
T PLN03186 182 GLN--GADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLA 259 (342)
T ss_pred CCC--hhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 111 2346688999999999988888888777777789999999999999886543321 24456788999999999
Q ss_pred HHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-CCeEEEEEEeCCC
Q 035774 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK-SGQRFMNVEKSPT 321 (357)
Q Consensus 243 ~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~-~~~R~l~v~K~r~ 321 (357)
+++|++||+|||+....+.. ..|. .+.++|++|..|+|++++|++|++. +..|.++|+|+|+
T Consensus 260 ~~~~vaVviTNqv~~~~~~~-~~~~----------------~~~~~P~gG~~~~h~~~tRl~L~k~~~~~R~~~v~ksp~ 322 (342)
T PLN03186 260 DEFGVAVVITNQVVAQVDGS-AFFA----------------GPQLKPIGGNIMAHASTTRLALRKGRGENRICKVISSPC 322 (342)
T ss_pred HHcCCEEEEEcCEEEccCCc-cccC----------------CCccccchhHHHHhhccEEEEEEecCCCeEEEEEEECCC
Confidence 99999999999998765421 1111 1246899999999999999999974 5689999999999
Q ss_pred CCCceeEEEEcCCCceecc
Q 035774 322 SPPLAFSFTINPSGISLLT 340 (357)
Q Consensus 322 ~~~~~~~f~I~~~Gi~~~~ 340 (357)
.|..++.|.|+++||....
T Consensus 323 ~p~~e~~F~I~~~Gi~~~~ 341 (342)
T PLN03186 323 LPEAEARFSISSEGVTDVK 341 (342)
T ss_pred CCCeEEEEEEECCceecCC
Confidence 9999899999999998653
No 4
>PTZ00035 Rad51 protein; Provisional
Probab=100.00 E-value=1.4e-49 Score=364.83 Aligned_cols=307 Identities=25% Similarity=0.331 Sum_probs=264.3
Q ss_pred ccccCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcccCCCCCC
Q 035774 6 ISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLP 85 (357)
Q Consensus 6 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (357)
+...++++..+++|+++|++|+++++..++.+|.++.+++++++.+++.++.+....++.+|.++++++.+ ..+++
T Consensus 26 l~~~g~~~~~~~kL~~~g~~t~~~~~~~~~~~L~~~~gis~~~~~~i~~~~~~~~~~~~~ta~~~~~~~~~----~~~is 101 (337)
T PTZ00035 26 LQSAGINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVPMGFISATEYLEARKN----IIRIT 101 (337)
T ss_pred HhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHHhcccCCCCHHHHHHhhcc----Ccccc
Confidence 44578999999999999999999999999999999999999999999999998888899999999988533 67899
Q ss_pred CCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhh
Q 035774 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165 (357)
Q Consensus 86 TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~ 165 (357)
||++.||.+|+||+++|++++|+|+||+|||+||++++.++.++...||.+++|+|||+|+.|+++|+.++.+..
T Consensus 102 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~----- 176 (337)
T PTZ00035 102 TGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERF----- 176 (337)
T ss_pred CCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHh-----
Confidence 999999999999999999999999999999999999999988766677778999999999999999999887641
Q ss_pred cccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCC---CCChHHHHHHHHHHHHHH
Q 035774 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLA 242 (357)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~---~~r~~~~~~i~~~Lk~la 242 (357)
... ....++++.+.++.+.+++.+.+..+...+.+.++++|||||++++++.++.+. ..|++.+.+++..|+++|
T Consensus 177 g~~--~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la 254 (337)
T PTZ00035 177 GLD--PEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLA 254 (337)
T ss_pred CCC--hHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHH
Confidence 111 235678899999999998888888877777778999999999999988755432 125566888999999999
Q ss_pred HHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-CCeEEEEEEeCCC
Q 035774 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK-SGQRFMNVEKSPT 321 (357)
Q Consensus 243 ~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~-~~~R~l~v~K~r~ 321 (357)
+++|++||+|||++...+.. .+|. ....+|++|..|.|.+++|+++++. +..|.++|+|+|.
T Consensus 255 ~~~~vavvvtNqv~~~~~~~-~~~~----------------~~~~~p~gG~~~~h~~~~Rl~l~k~~~~~R~~~i~ksp~ 317 (337)
T PTZ00035 255 DEFNVAVVITNQVMADVDGA-SMFV----------------ADPKKPIGGHIIAHASTTRLSLRKGRGEQRICKIYDSPN 317 (337)
T ss_pred HHcCcEEEEecceEEecCCc-cccC----------------CCCccCCchHHHHhheeEEEEEEecCCCeeEEEEEECCC
Confidence 99999999999998875421 1110 1245799999999999999999986 5689999999999
Q ss_pred CCCceeEEEEcCCCceecc
Q 035774 322 SPPLAFSFTINPSGISLLT 340 (357)
Q Consensus 322 ~~~~~~~f~I~~~Gi~~~~ 340 (357)
.|...+.|+|+++||....
T Consensus 318 ~p~~~~~f~It~~Gi~~~~ 336 (337)
T PTZ00035 318 LPESEAVFAISEGGIIDAK 336 (337)
T ss_pred CCCeeEEEEEeCCccccCC
Confidence 9998899999999998654
No 5
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=100.00 E-value=7.2e-49 Score=357.43 Aligned_cols=308 Identities=24% Similarity=0.329 Sum_probs=262.0
Q ss_pred ccccCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcccCCCCCC
Q 035774 6 ISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLP 85 (357)
Q Consensus 6 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (357)
+..+++++.+.++|+++|+.|+++++..++.+|.++.+++++++.++...+.+.+...+.++.++++.+.+ ..+++
T Consensus 4 ~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~L~~i~~ls~~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~----~~~~~ 79 (316)
T TIGR02239 4 LEGNGITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRQE----VIQLT 79 (316)
T ss_pred hhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhcccccccHHHHHhcccc----cceeC
Confidence 45688999999999999999999999999999999999999999999999888888899999988765432 67899
Q ss_pred CCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhh
Q 035774 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165 (357)
Q Consensus 86 TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~ 165 (357)
||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+...||.+++|+|||+|+.|++.|+.++.+..
T Consensus 80 tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~----- 154 (316)
T TIGR02239 80 TGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERY----- 154 (316)
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHc-----
Confidence 999999999999999999999999999999999999999888766666667899999999999999998887542
Q ss_pred cccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCC---CChHHHHHHHHHHHHHH
Q 035774 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLA 242 (357)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~---~r~~~~~~i~~~Lk~la 242 (357)
... ...+.+++++.++.+.+++...+..+...+...++++|||||++++++..+.+.. .|+..+.+++..|+++|
T Consensus 155 ~~~--~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la 232 (316)
T TIGR02239 155 GLN--PEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLA 232 (316)
T ss_pred CCC--hHHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 111 2356778888888888888888888877777788999999999999876543321 24456788999999999
Q ss_pred HHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-CCeEEEEEEeCCC
Q 035774 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK-SGQRFMNVEKSPT 321 (357)
Q Consensus 243 ~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~-~~~R~l~v~K~r~ 321 (357)
++++++||+|||++...+..+..|. ....+|++|..|+|++++|++|++. +..|.++|+|+|+
T Consensus 233 ~~~~vavv~tNqv~~~~~~~~~~~~----------------g~~~~p~gG~~~~h~~~~ri~l~k~~~~~R~~~v~ksp~ 296 (316)
T TIGR02239 233 DEFGVAVVITNQVVAQVDGAGSMFA----------------GDPKKPIGGNIMAHASTTRLSLRKGRGEQRICKIYDSPC 296 (316)
T ss_pred HHhCCEEEEECceEEecCCcccccc----------------CCCCcCCchHHHHhhccEEEEEEecCCCeEEEEEEECCC
Confidence 9999999999999876552111110 1246799999999999999999985 6789999999999
Q ss_pred CCCceeEEEEcCCCceecc
Q 035774 322 SPPLAFSFTINPSGISLLT 340 (357)
Q Consensus 322 ~~~~~~~f~I~~~Gi~~~~ 340 (357)
.|...+.|+|+++||...+
T Consensus 297 ~p~~~~~f~i~~~Gi~~~~ 315 (316)
T TIGR02239 297 LPESEAMFAIYEDGIGDPK 315 (316)
T ss_pred CCCeEEEEEEeCCceecCC
Confidence 9998899999999998754
No 6
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=100.00 E-value=2.6e-47 Score=338.16 Aligned_cols=250 Identities=38% Similarity=0.572 Sum_probs=210.5
Q ss_pred CCcccHHHHHHHHHhcccCCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEE
Q 035774 62 PPFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIY 141 (357)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~ 141 (357)
.+|.+|.++++++.+ ...|+||++.||.+|+||++.|.+++|+|+||+|||+||+|++.+++++...||.+.+|+|
T Consensus 2 ~~f~ta~~~~~~~~~----~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvy 77 (256)
T PF08423_consen 2 MGFQTAAELLEQRKR----WSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVY 77 (256)
T ss_dssp TSSEEHHHHHHHHHT----S-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEE
T ss_pred CCcccHHHHHHHhhc----CCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEE
Confidence 478899999988654 5689999999999999999999999999999999999999999999998888888999999
Q ss_pred EeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCC
Q 035774 142 IDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVH 221 (357)
Q Consensus 142 i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~ 221 (357)
||+|..|+.+|+.++++.. ..+ .+..++++++.++.+..++.+++..+...+.+.+++||||||++++++.++
T Consensus 78 idTe~~f~~~Rl~~i~~~~-----~~~--~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~ 150 (256)
T PF08423_consen 78 IDTEGTFSPERLQQIAERF-----GLD--PEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEF 150 (256)
T ss_dssp EESSSSS-HHHHHHHHHHT-----TS---HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHS
T ss_pred EeCCCCCCHHHHHHHhhcc-----ccc--cchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHH
Confidence 9999999999999998642 222 245789999999999999999999998888888999999999999998765
Q ss_pred CCC---CCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhh
Q 035774 222 EQR---APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHA 298 (357)
Q Consensus 222 ~~~---~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~ 298 (357)
.+. ..|...+..++..|+++|++++++||+|||++...+..+ .+ .....+|+||.+|+|.
T Consensus 151 ~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~~~-~~----------------~~~~~~PalG~~w~h~ 213 (256)
T PF08423_consen 151 SGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKIDSNS-LF----------------DGDRLKPALGHSWSHA 213 (256)
T ss_dssp GSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT-----S----------------STTSEEETTHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCCccc-cc----------------ccccceecCcchhhhh
Confidence 432 236678999999999999999999999999988655210 00 0135789999999999
Q ss_pred ccEEEEEEEe-CCeEEEEEEeCCCCCCceeEEEEcCCCceec
Q 035774 299 VTIRLVLEAK-SGQRFMNVEKSPTSPPLAFSFTINPSGISLL 339 (357)
Q Consensus 299 ~~~rl~l~~~-~~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~~ 339 (357)
+++|+.|++. +..|.++|+|+|..|...+.|.|+++||+..
T Consensus 214 ~~~Rl~l~k~~~~~R~~~i~ksp~~p~~~~~f~It~~Gi~d~ 255 (256)
T PF08423_consen 214 VTTRLFLSKGRGSERVATIVKSPSLPEGSASFQITEDGIRDV 255 (256)
T ss_dssp SSEEEEEEECSTTEEEEEEEECSSSSSEEEEEEEETTEEEE-
T ss_pred ccEEEEEEeCCCCeEEEEEeECCCCCCceEEEEEeCCCccCC
Confidence 9999999985 4689999999999999999999999999864
No 7
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=100.00 E-value=3e-45 Score=336.66 Aligned_cols=307 Identities=26% Similarity=0.358 Sum_probs=258.4
Q ss_pred Ccccccccc-CCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHhcc
Q 035774 1 MANKLISEM-RLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCP-PFQTALLLMEQRAATE 78 (357)
Q Consensus 1 ~~~~~~~~~-~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 78 (357)
|.+.++..+ ++.+.+.++|.++|+.|++++...++.+|.++++++.+.+..+.+.+...+.. ++.++.++++++.+
T Consensus 3 ~~~~~l~~l~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~g~~~~~a~~l~~~a~~~~~~~~~~t~~~l~~~~ks-- 80 (317)
T PRK04301 3 MKEKDLEDLPGVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIGGFETALEVLERRKN-- 80 (317)
T ss_pred cccccHhhcCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhcCCCHHHHHHHHHHHHHhhccccCccHHHHHHhhcc--
Confidence 677888888 69999999999999999999999999999999999999999998887765555 67888887766422
Q ss_pred cCCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHh
Q 035774 79 HLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA 158 (357)
Q Consensus 79 ~~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~ 158 (357)
...++||++.||++|+||+++|.+++|+|+||+|||+||+|++.+++.+...||.+.+|+|||+|++|++.|+.+++.
T Consensus 81 --~~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~ 158 (317)
T PRK04301 81 --VGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAE 158 (317)
T ss_pred --CCccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999988766677788999999999999999998875
Q ss_pred ccCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhh-cCeeEEEEeccccccCCCCCCCC---CChHHHHHH
Q 035774 159 SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ-NQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWH 234 (357)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~-~~~~lvvIDsl~~l~~~~~~~~~---~r~~~~~~i 234 (357)
.. .. ..+..+++++++++.+..+...++..+...+.. .++++|||||++++++.+..+.. .|++.+.++
T Consensus 159 ~~-----g~--~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~ 231 (317)
T PRK04301 159 AL-----GL--DPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKH 231 (317)
T ss_pred Hc-----CC--ChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHH
Confidence 41 11 123456788888888877777777888777776 78999999999999876443321 244557788
Q ss_pred HHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-CCeEE
Q 035774 235 ISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK-SGQRF 313 (357)
Q Consensus 235 ~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~-~~~R~ 313 (357)
+..|+++|++++++||+|||++...+. . +.....|++|..|.|.+++||.+++. +..|.
T Consensus 232 ~~~L~~la~~~~vavl~tnqv~~~~~~---~-----------------~~~~~~~~~G~~~~~~~~~rl~l~k~~~~~R~ 291 (317)
T PRK04301 232 LHDLLRLADLYNAAVVVTNQVMARPDA---F-----------------FGDPTQPIGGHILGHTATFRIYLRKSKGNKRI 291 (317)
T ss_pred HHHHHHHHHHhCCEEEEeceEEecccc---c-----------------cCccccCCcchHhHhheeEEEEEEecCCCceE
Confidence 899999999999999999999875431 0 11245799999999999999999985 67899
Q ss_pred EEEEeCCCCCCceeEEEEcCCCcee
Q 035774 314 MNVEKSPTSPPLAFSFTINPSGISL 338 (357)
Q Consensus 314 l~v~K~r~~~~~~~~f~I~~~Gi~~ 338 (357)
++|+|+|+.|.+.+.|+|+++||..
T Consensus 292 ~~v~k~~~~~~~~~~f~I~~~Gi~~ 316 (317)
T PRK04301 292 ARLVDSPHLPEGEAVFRITEEGIRD 316 (317)
T ss_pred EEEEeCCCCCCceEEEEEeCCcccC
Confidence 9999999999888999999999964
No 8
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=2e-47 Score=320.87 Aligned_cols=299 Identities=28% Similarity=0.386 Sum_probs=265.5
Q ss_pred HHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcccCCCCCCCCchhHH
Q 035774 13 KSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRLKGLD 92 (357)
Q Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD 92 (357)
..-..+|...|+.+++-++.+....|..+.++++..+.++.+++.+....++.+|.++++++.. ...|+||+..||
T Consensus 30 ~td~~kLk~~gi~tikgv~ist~r~l~~lkgise~kv~klkeaa~k~~~~~f~tA~e~le~r~~----v~~ItTgs~~lD 105 (335)
T KOG1434|consen 30 VTDIEKLKSKGICTIKGVLISTRRALCKLKGISEVKVDKLKEAANKSISHGFCTALELLEQRKT----VGSITTGSSALD 105 (335)
T ss_pred hhhHHhhccCCeeeEeeeeehhHHHHHHHhhHHHHhhhhHHHhhCCccCcCcchHHHHHhhhhc----cceeecchHHHh
Confidence 4456778888888888888888888999999999999999998888888899999999998755 568999999999
Q ss_pred hhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHH
Q 035774 93 AALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQ 172 (357)
Q Consensus 93 ~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~ 172 (357)
.+||||++.=++++|+|.||+|||+++++++.++.+|...||.+++++|||+|++|.+.|+.++++. +... .+
T Consensus 106 ~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IAe~-----~~~d--~d 178 (335)
T KOG1434|consen 106 DILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIAER-----FKVD--PD 178 (335)
T ss_pred hhhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHHHH-----hCCC--HH
Confidence 9999999999999999999999999999999999999999999999999999999999999999965 2222 35
Q ss_pred HhhcCeEEeCCCCHHHHHHHHHHHHHHhhhc-CeeEEEEeccccccCCCCCCC---CCChHHHHHHHHHHHHHHHHcCCe
Q 035774 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLAEFSRIP 248 (357)
Q Consensus 173 ~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvvIDsl~~l~~~~~~~~---~~r~~~~~~i~~~Lk~la~~~~~~ 248 (357)
..++|++|.++.+.++..+++..+...+.++ ..++||||||.++|+.++++. +.|++.+..++..|.++|+++|++
T Consensus 179 ~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~FRvDy~grgeLseRqqkLn~ml~kl~~laeefnvA 258 (335)
T KOG1434|consen 179 FTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALFRVDYDGRGELSERQQKLNQMLQKLNKLAEEFNVA 258 (335)
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehheeecccccccHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 6789999999999999999999999999886 789999999999999988743 348889999999999999999999
Q ss_pred EEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC-CeEEEEEEeCCCCCCcee
Q 035774 249 IVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS-GQRFMNVEKSPTSPPLAF 327 (357)
Q Consensus 249 vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~-~~R~l~v~K~r~~~~~~~ 327 (357)
|+++||++.+.+. +.+|. ....+|++|+.|+|...+|+.|+|+. ..|+.++.|||..|..++
T Consensus 259 VfltNQvttdpga-~~~f~----------------s~~~kp~gGh~~aHAsttRlilrkgrg~eR~Akl~dSP~mpe~e~ 321 (335)
T KOG1434|consen 259 VFLTNQVTTDPGA-GMTFA----------------SQDLKPAGGHSWAHASTTRLILRKGRGDERVAKLYDSPSMPEAEA 321 (335)
T ss_pred EEEecceecCCcc-ccccc----------------ccccCccccchhhhhhheeEEEEcCCcceeeeecccCCCCCcceE
Confidence 9999999988762 12221 12478999999999999999999987 799999999999999999
Q ss_pred EEEEcCCCceec
Q 035774 328 SFTINPSGISLL 339 (357)
Q Consensus 328 ~f~I~~~Gi~~~ 339 (357)
.|.|++.||...
T Consensus 322 ~y~It~~Gi~ds 333 (335)
T KOG1434|consen 322 SYVITPGGIRDS 333 (335)
T ss_pred EEEEcCCccccC
Confidence 999999999764
No 9
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=100.00 E-value=2.3e-43 Score=323.98 Aligned_cols=299 Identities=26% Similarity=0.353 Sum_probs=246.5
Q ss_pred ccCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHhcccCCCCCCC
Q 035774 8 EMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCP-PFQTALLLMEQRAATEHLGGHLPT 86 (357)
Q Consensus 8 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~T 86 (357)
.-++.+...++|.++|+.+++++...++.+|.++.+++.+.+..+...+.+.... .+.++.++++.+.+ ...++|
T Consensus 4 i~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g~~~~~a~~l~~~~~~~~~~~~~~t~~~~~~~~~s----~~~~~T 79 (310)
T TIGR02236 4 LPGVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGGFETADDVLERRKT----IGKITT 79 (310)
T ss_pred cCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhccCCCHHHHHHHHHHHHHHhhccCCCCHHHHHHhhcc----CCeecC
Confidence 3578899999999999999999999999999999999988888888776654433 45788777776422 567999
Q ss_pred CchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhc
Q 035774 87 RLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFH 166 (357)
Q Consensus 87 G~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~ 166 (357)
|++.||.+|+||++.|.+++|+|+||+|||+||+|++.+++.+...|+.+++|+|||+|++|+++|+.+++... .
T Consensus 80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~-----g 154 (310)
T TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEAR-----G 154 (310)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHc-----C
Confidence 99999999999999999999999999999999999999998876666667799999999999999999887541 1
Q ss_pred ccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhc--CeeEEEEeccccccCCCCCCC---CCChHHHHHHHHHHHHH
Q 035774 167 SKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN--QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSL 241 (357)
Q Consensus 167 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~--~~~lvvIDsl~~l~~~~~~~~---~~r~~~~~~i~~~Lk~l 241 (357)
.. .....+++++..+.+..+...+++.+...+.+. ++++|||||++++++.++.+. ..|++.+.+++..|+.+
T Consensus 155 l~--~~~~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~ 232 (310)
T TIGR02236 155 LD--PDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRL 232 (310)
T ss_pred CC--HHHHhhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHH
Confidence 11 123567888888887777666777777777665 489999999999987754432 12445677888999999
Q ss_pred HHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-CCeEEEEEEeCC
Q 035774 242 AEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK-SGQRFMNVEKSP 320 (357)
Q Consensus 242 a~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~-~~~R~l~v~K~r 320 (357)
|++++++||+|||++...+. . +....+|++|..|+|++++|+.|++. +..|.++|.|+|
T Consensus 233 a~~~~~~v~~tnqv~~~~~~---~-----------------~~~~~~~~~G~~~~h~~~~rl~l~~~~~~~R~~~~~k~~ 292 (310)
T TIGR02236 233 ADLYNAAVVVTNQVMARPDA---F-----------------FGDPTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSP 292 (310)
T ss_pred HHHhCcEEEEeceeeecCcc---c-----------------cCccccCCcchhhhhheeEEEEEEecCCCeEEEEEEECC
Confidence 99999999999999876431 0 11245799999999999999999984 568999999999
Q ss_pred CCCCceeEEEEcCCCce
Q 035774 321 TSPPLAFSFTINPSGIS 337 (357)
Q Consensus 321 ~~~~~~~~f~I~~~Gi~ 337 (357)
+.|.+.+.|+|+++||.
T Consensus 293 ~~~~~~~~f~i~~~Gi~ 309 (310)
T TIGR02236 293 HLPEGEAVFRITEKGIE 309 (310)
T ss_pred CCCCeeEEEEEeCCCcc
Confidence 99998889999999986
No 10
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=100.00 E-value=3.7e-39 Score=274.89 Aligned_cols=312 Identities=28% Similarity=0.415 Sum_probs=229.0
Q ss_pred cccCCCHHHHHHHHhCCCCCHH--------HHhcCCHHHHHHHhCCCHHHHHHHHH-HHHHhcCCCcccHHHHHHHHH--
Q 035774 7 SEMRLPKSIANIFAARNITTAK--------DALSLTELELMKLLDVELSEVRSALA-LVSEIVCPPFQTALLLMEQRA-- 75 (357)
Q Consensus 7 ~~~~l~~~~~~~l~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 75 (357)
....++++++..-+.+...+.+ |++..+..++.+++..+..+.-++.. .+.+. .+++.+..
T Consensus 4 ~l~~ln~~i~~dee~a~llsa~evl~vs~vdfltlt~~sl~r~~h~s~~e~lr~~~~li~q~--------~~~~~e~~~~ 75 (351)
T KOG1564|consen 4 FLDQLNKHIREDEEQANLLSAEEVLTVSKVDFLTLTQQSLHRIVHKSTPEDLRVLKDLIMQN--------LKLKPENLCS 75 (351)
T ss_pred hhccccHHHHHHHHHhhhcCHHHhcCcCcccceecChhHHHHHHHhccHHHHHHHHHHHHHH--------HHhcchhhhc
Confidence 3456666666665555444443 55556667777777766655544332 23222 12222211
Q ss_pred hcccCCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHH
Q 035774 76 ATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIE 155 (357)
Q Consensus 76 ~~~~~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~ 155 (357)
........++||...||++|+||++.+.+++|+|++|+|||+||+|++....+|...||.+++++||++|..|+.+|+.+
T Consensus 76 ~s~~~~~~lttgc~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~q 155 (351)
T KOG1564|consen 76 RSKTNRSKLTTGCVALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQ 155 (351)
T ss_pred cccCCchhcccccHHHHHHhcCCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHH
Confidence 11222346999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHhccCchhhcccc---hHHHhhcCeEEeCCCCHHHHHHHHHH-HHHHhhhcCeeEEEEeccccccCCCCCCCC----CC
Q 035774 156 MGASSFPEIFHSKG---MAQEMAGRILVLQPTSLSEFTESLEK-IKVSLLQNQVKLLVIDSMEALVPGVHEQRA----PG 227 (357)
Q Consensus 156 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~l~~-l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~----~r 227 (357)
+... ++.....+. ......+++++..+.+.+.+..++.. +.-.+.+.++++|||||+++.++.+++... .|
T Consensus 156 L~~~-~~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~fR~E~d~~~Sdl~~r 234 (351)
T KOG1564|consen 156 LSHT-LPQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALFRSEFDYNPSDLKKR 234 (351)
T ss_pred HHHh-cccCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceeccCcceEEEEehhhHHHHHHhccChhhhhhH
Confidence 7643 211111111 01112345899999998888887754 566667778999999999999998765332 25
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcc-----cccccccccccccccCCCcceecccchhHhhhccEE
Q 035774 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLY-----PFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIR 302 (357)
Q Consensus 228 ~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~r 302 (357)
...+..+...|+.+|.+++++||++||++.........+ .+...|.. +...|+||..|+|.+.+|
T Consensus 235 ~~~l~rla~~Lr~LA~~~~~aVV~~NQVtd~~~~~~~~~~l~~~d~r~~w~s----------gw~vPsLGL~WaN~v~tR 304 (351)
T KOG1564|consen 235 ARHLFRLAGKLRQLASKFDLAVVCANQVTDRVETSDDLSGLRIGDYRYLWSS----------GWVVPSLGLTWANCVSTR 304 (351)
T ss_pred HHHHHHHHHHHHHHHHhcCccEEEeeccccccccccccCCccccchhhcccc----------ccccccccceecccccee
Confidence 677889999999999999999999999988744211111 11111111 236799999999999999
Q ss_pred EEEEEe----------CCeEEEEEEeCCCCCCceeEEEEcCCCce
Q 035774 303 LVLEAK----------SGQRFMNVEKSPTSPPLAFSFTINPSGIS 337 (357)
Q Consensus 303 l~l~~~----------~~~R~l~v~K~r~~~~~~~~f~I~~~Gi~ 337 (357)
+.+.+. ...|.++|+.+++.|+..++|.|+.+||.
T Consensus 305 l~l~r~~k~~~sa~~~~~~R~l~VvySp~~p~~~~~~~It~eGI~ 349 (351)
T KOG1564|consen 305 LLLSRSTKNCDSAVSRSAKRTLRVVYSPYLPPSSCEFMITAEGIC 349 (351)
T ss_pred eeeeeccccccchhhcccceEEEEEecCCCCCcceEEEEecceEe
Confidence 999882 13799999999999999999999999996
No 11
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=100.00 E-value=5.5e-39 Score=284.10 Aligned_cols=230 Identities=31% Similarity=0.475 Sum_probs=192.8
Q ss_pred CCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCch
Q 035774 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163 (357)
Q Consensus 84 i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~ 163 (357)
+|||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+..+||.+.+|+||++|+.++..|+.++.+...
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~-- 78 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFG-- 78 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhc--
Confidence 689999999999999999999999999999999999999999877666666678999999999999999988875421
Q ss_pred hhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhc-CeeEEEEeccccccCCCCCCC---CCChHHHHHHHHHHH
Q 035774 164 IFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLIT 239 (357)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvvIDsl~~l~~~~~~~~---~~r~~~~~~i~~~Lk 239 (357)
. ......+++++.++.+..++...+..+...+.+. ++++|||||++++++...... ..+.+.+.+++..|+
T Consensus 79 ---~--~~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~ 153 (235)
T cd01123 79 ---L--DPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLK 153 (235)
T ss_pred ---c--ChHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 1 1235678899999999889988888888888888 999999999999876533332 235567889999999
Q ss_pred HHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC-CeEEEEEEe
Q 035774 240 SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS-GQRFMNVEK 318 (357)
Q Consensus 240 ~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~-~~R~l~v~K 318 (357)
++|++++|+||++||++...+... .......+|++|..|++.+++|+++++.. ..|+++|.|
T Consensus 154 ~la~~~~~avl~tn~~~~~~~~~~-----------------~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~~~~r~~~i~k 216 (235)
T cd01123 154 RLADEFNVAVVITNQVTARPDGAA-----------------MFGGDPKKPAGGNIWAHASTTRLYLRKGRGEERIAKIVD 216 (235)
T ss_pred HHHHHhCCEEEEeccEeecCCccc-----------------ccCCCCeeccCccHhhCCceEEEEEEECCCCceEEEEee
Confidence 999999999999999987544110 00112457999999999999999998875 689999999
Q ss_pred CCCCCCceeEEEEcCCCce
Q 035774 319 SPTSPPLAFSFTINPSGIS 337 (357)
Q Consensus 319 ~r~~~~~~~~f~I~~~Gi~ 337 (357)
++..+...+.|+|+++||+
T Consensus 217 ~~~~~~~~~~f~It~~Gi~ 235 (235)
T cd01123 217 SPHLPEGEAVFAITEEGIR 235 (235)
T ss_pred CCCCCCceEEEEEeCCccC
Confidence 9999988899999999985
No 12
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=100.00 E-value=1.5e-35 Score=260.61 Aligned_cols=219 Identities=34% Similarity=0.482 Sum_probs=180.2
Q ss_pred CCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCch
Q 035774 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163 (357)
Q Consensus 84 i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~ 163 (357)
++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+...||.+.+|+||++|+.++..|+.++.....
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~-- 78 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFG-- 78 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhc--
Confidence 689999999999999999999999999999999999999999887655556668999999999999999988775421
Q ss_pred hhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCC---CCChHHHHHHHHHHHH
Q 035774 164 IFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240 (357)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~---~~r~~~~~~i~~~Lk~ 240 (357)
.. .....+++++.++.+.+++...+..+.......++++|||||++.+++...... ..|...+.++++.|+.
T Consensus 79 ---~~--~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~ 153 (226)
T cd01393 79 ---LD--PEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLR 153 (226)
T ss_pred ---cc--hhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHH
Confidence 11 234568899999999888888888776666677899999999999987643322 2345678889999999
Q ss_pred HHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC----CeEEEEE
Q 035774 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS----GQRFMNV 316 (357)
Q Consensus 241 la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~----~~R~l~v 316 (357)
+|++++|+||++||++...... +....+|++|..|++.+++|+.|++.. ..|.++|
T Consensus 154 ~a~~~~~~vi~tnq~~~~~~~~--------------------~~~~~~p~~G~~~~~~~~~ri~l~~~~~~~~~~r~~~~ 213 (226)
T cd01393 154 LADKFNVAVVFTNQVRAKVDVM--------------------FGDPETPAGGNALAHASTTRLDLRKGRGIIGERRIAKV 213 (226)
T ss_pred HHHHhCcEEEEEEEEeeecccc--------------------cCCCccccCchhhhCcccEEEEEEecCCccCcEEEEEE
Confidence 9999999999999998764410 012356999999999999999999876 5899999
Q ss_pred EeCCCCCCceeEE
Q 035774 317 EKSPTSPPLAFSF 329 (357)
Q Consensus 317 ~K~r~~~~~~~~f 329 (357)
+|++..|.+++.|
T Consensus 214 ~k~~~~~~~~~~~ 226 (226)
T cd01393 214 VKSPALPEAEAEF 226 (226)
T ss_pred EeCCCCCCccccC
Confidence 9999988876654
No 13
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=100.00 E-value=8.5e-35 Score=255.43 Aligned_cols=218 Identities=30% Similarity=0.460 Sum_probs=177.0
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccC
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF 161 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~ 161 (357)
++++||+++||++|+||+++|++++|+|+||+|||+||++++.+++.. +.+|+||++| .++.+|+.++....
T Consensus 3 ~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~------~~~v~yi~~e-~~~~~r~~~~~~~~- 74 (225)
T PRK09361 3 ERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN------GKKVIYIDTE-GLSPERFKQIAGED- 74 (225)
T ss_pred ccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEECC-CCCHHHHHHHHhhC-
Confidence 479999999999999999999999999999999999999999998752 5899999999 78888888876541
Q ss_pred chhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCC---CCCChHHHHHHHHHH
Q 035774 162 PEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ---RAPGQHPLSWHISLI 238 (357)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~---~~~r~~~~~~i~~~L 238 (357)
.....++++++++.+..++.+.++.+...+. .++++|||||++++++..... ...+.+.+..++..|
T Consensus 75 ---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L 144 (225)
T PRK09361 75 ---------FEELLSNIIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHL 144 (225)
T ss_pred ---------hHhHhhCeEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHH
Confidence 1234568888888888887777777766655 789999999999988653211 111345677778889
Q ss_pred HHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEE-eCCeEEEEEE
Q 035774 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA-KSGQRFMNVE 317 (357)
Q Consensus 239 k~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~-~~~~R~l~v~ 317 (357)
+++|+++|++|+++||+....+. ...+|++|..|++.++.++.|++ .+..|.+.+.
T Consensus 145 ~~~a~~~~v~vi~tnq~~~~~~~-----------------------~~~~~~gg~~~~~~~d~ii~l~~~~~~~r~~~i~ 201 (225)
T PRK09361 145 LKLARKHDLAVVITNQVYSDIDS-----------------------DGLRPLGGHTLEHWSKTILRLEKFRNGKRRATLE 201 (225)
T ss_pred HHHHHHhCCEEEEEccceecCCC-----------------------CcccCCCcchhhhhccEEEEEEEccCCeEEEEEE
Confidence 99999999999999999764331 12356777889999999999998 4567888999
Q ss_pred eCCCCCC-ceeEEEEcCCCceecc
Q 035774 318 KSPTSPP-LAFSFTINPSGISLLT 340 (357)
Q Consensus 318 K~r~~~~-~~~~f~I~~~Gi~~~~ 340 (357)
|+|..++ ..++|+|+++||.+.+
T Consensus 202 k~~~~~~~~~~~f~It~~Gi~~~~ 225 (225)
T PRK09361 202 KHRSRPEGESAEFRITDRGIEIID 225 (225)
T ss_pred ECCCCCCCCeEEEEEeCCcEecCC
Confidence 9998875 6689999999998753
No 14
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.1e-34 Score=253.26 Aligned_cols=223 Identities=29% Similarity=0.359 Sum_probs=191.6
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
...++||...||.+|+||+|+|.+++|+||+|||||++|+|++++++++ ++.|+|||+|+.++++|+.+++...
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~------g~~a~fIDtE~~l~p~r~~~l~~~~ 112 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP------GGKAAFIDTEHALDPERAKQLGVDL 112 (279)
T ss_pred cccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcC------CCeEEEEeCCCCCCHHHHHHHHHhh
Confidence 6789999999999999999999999999999999999999999999874 4699999999999999999988541
Q ss_pred CchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCC---CChHHHHHHHHH
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISL 237 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~---~r~~~~~~i~~~ 237 (357)
.+++++.++.+.++...++..+.....+ ++++|||||++++++....+.. .+.+.+...++.
T Consensus 113 --------------~d~l~v~~~~~~e~q~~i~~~~~~~~~~-~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~ 177 (279)
T COG0468 113 --------------LDNLLVSQPDTGEQQLEIAEKLARSGAE-KIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRK 177 (279)
T ss_pred --------------hcceeEecCCCHHHHHHHHHHHHHhccC-CCCEEEEecCcccchhhhcCcchHHHHHHHHHHHHHH
Confidence 5789999999999998888887777655 7999999999999998654422 255778889999
Q ss_pred HHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-------CC
Q 035774 238 ITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK-------SG 310 (357)
Q Consensus 238 Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~-------~~ 310 (357)
|..+|+++|++|+++||+..+.+. +|. +..+|.+|+...|...+|+.+++. ++
T Consensus 178 L~~~a~~~~~~vi~~NQv~~k~~~---~f~-----------------~~~~~~GG~~L~~~as~rl~l~k~~~~~~~~g~ 237 (279)
T COG0468 178 LTRLANKYNTAVIFTNQVRAKIGV---MFG-----------------DPETTTGGNALKFYASVRLDLRRIESLKEDVGN 237 (279)
T ss_pred HHHHHHHcCcEEEEECceeeecCc---ccC-----------------CcccCCCchHHHhhhheEEEEeeccccccccCC
Confidence 999999999999999999887662 211 123577788899999999999988 67
Q ss_pred eEEEEEEeCCCCCCc-eeEEEEcCCCceeccCCCc
Q 035774 311 QRFMNVEKSPTSPPL-AFSFTINPSGISLLTDDGT 344 (357)
Q Consensus 311 ~R~l~v~K~r~~~~~-~~~f~I~~~Gi~~~~~~~~ 344 (357)
.|.++++|++..|+. .+.|.|+.+|+......-+
T Consensus 238 ~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~~~~~ 272 (279)
T COG0468 238 KRRVKVVKNKVAPPFKEAEFDITYGGGIDREGELI 272 (279)
T ss_pred eEEEEEEeCCCCCCCceeEEEeecCcccccccchh
Confidence 999999999999986 8999999988877655433
No 15
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=100.00 E-value=1.1e-33 Score=247.27 Aligned_cols=213 Identities=30% Similarity=0.410 Sum_probs=166.6
Q ss_pred CCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCch
Q 035774 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163 (357)
Q Consensus 84 i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~ 163 (357)
++||+++||.+|+||+++|++++|+|+||+|||+||++++.+++.. +.+|+||++|..++ .++.++....
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~------g~~v~yi~~e~~~~-~~~~~~~~~~--- 70 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ------GKKVAYIDTEGLSS-ERFRQIAGDR--- 70 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc------CCeEEEEECCCCCH-HHHHHHHhHC---
Confidence 6899999999999999999999999999999999999999998742 58999999998776 6777665431
Q ss_pred hhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCC---CCChHHHHHHHHHHHH
Q 035774 164 IFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITS 240 (357)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~---~~r~~~~~~i~~~Lk~ 240 (357)
......+++++++.+..++...+..+...+. .++++|||||++++++...... ..+...+.+++..|+.
T Consensus 71 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~ 142 (218)
T cd01394 71 -------PERAASSIIVFEPMDFNEQGRAIQETETFAD-EKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLW 142 (218)
T ss_pred -------hHhhhcCEEEEeCCCHHHHHHHHHHHHHHHh-cCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHH
Confidence 1234567888888777676666666665543 4589999999999976533221 1133467778888999
Q ss_pred HHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC-CeEEEEEEeC
Q 035774 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS-GQRFMNVEKS 319 (357)
Q Consensus 241 la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~-~~R~l~v~K~ 319 (357)
+|++++|+||++||++...+. ...+|++|..|++++++++.|++.. ..|.+.+.|+
T Consensus 143 ~a~~~~~~vi~t~q~~~~~~~-----------------------~~~~p~~g~~~~~~~d~~i~l~~~~~~~r~~~~~~~ 199 (218)
T cd01394 143 LARKHDVAVVITNQVYSDVGS-----------------------GSVRPLGGHTLEHWSKVILRLEKLRVGTRRAVLEKH 199 (218)
T ss_pred HHHHhCCEEEEecCCEEcCCC-----------------------CcccccCCcchhcceeEEEEEEEcCCCeEEEEEeeC
Confidence 999999999999999764330 1346888889999999999999865 5566667777
Q ss_pred CCCCC-ceeEEEEcCCCce
Q 035774 320 PTSPP-LAFSFTINPSGIS 337 (357)
Q Consensus 320 r~~~~-~~~~f~I~~~Gi~ 337 (357)
|..+. ..+.|+|++.||+
T Consensus 200 ~~~~~~~~~~f~It~~Gi~ 218 (218)
T cd01394 200 RFRPEGSSVYFRITDKGIE 218 (218)
T ss_pred CCCCCCceEEEEEeCCccC
Confidence 77774 4589999999984
No 16
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=100.00 E-value=9.4e-33 Score=239.81 Aligned_cols=207 Identities=27% Similarity=0.436 Sum_probs=169.7
Q ss_pred HHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccch
Q 035774 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGM 170 (357)
Q Consensus 91 LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~ 170 (357)
||++|+||+++|++++|+|+||+|||+||++++.+.+.. +.+|+||++|+ +++.|+.++....
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~------g~~v~yi~~e~-~~~~rl~~~~~~~---------- 63 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQ------GKKVVYIDTEG-LSPERFKQIAEDR---------- 63 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC------CCeEEEEECCC-CCHHHHHHHHHhC----------
Confidence 799999999999999999999999999999999998742 58999999997 8899998887542
Q ss_pred HHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCC-CChHHHHHHHHHHHHHHHHcCCeE
Q 035774 171 AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA-PGQHPLSWHISLITSLAEFSRIPI 249 (357)
Q Consensus 171 ~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~-~r~~~~~~i~~~Lk~la~~~~~~v 249 (357)
.+...++++++++.+..++...+..+...+..+++++|||||++++++....... .+...+.+++..|+++++++++++
T Consensus 64 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~v 143 (209)
T TIGR02237 64 PERALSNFIVFEVFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAV 143 (209)
T ss_pred hHHHhcCEEEEECCCHHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 1234578888888888888777888877777778999999999999765332221 134467777888999999999999
Q ss_pred EEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeCCeEEEEEEeCCCCCC-ceeE
Q 035774 250 VVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSGQRFMNVEKSPTSPP-LAFS 328 (357)
Q Consensus 250 v~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~~~R~l~v~K~r~~~~-~~~~ 328 (357)
+++||++...+. ....|++|..|++.+++++.|++....|.+.|.|++..+. ..+.
T Consensus 144 l~t~~~~~~~~~-----------------------~~~~~~gg~~~~~~~d~vi~l~~~~~~r~~~i~k~~~~~~~~~~~ 200 (209)
T TIGR02237 144 VITNQVYTDVNN-----------------------GTLRPLGGHLLEHWSKVILRLEKFRGRRLATLEKHRSRPEGESVY 200 (209)
T ss_pred EEEcccEEecCC-----------------------CCCcCCCcchhheeeeEEEEEEecCCEEEEEEEECCCCCCCCeEE
Confidence 999998754331 1235778888999999999999877788888999888885 5689
Q ss_pred EEEcCCCce
Q 035774 329 FTINPSGIS 337 (357)
Q Consensus 329 f~I~~~Gi~ 337 (357)
|+|+++||+
T Consensus 201 f~It~~Gi~ 209 (209)
T TIGR02237 201 FRITDDGIE 209 (209)
T ss_pred EEEeCCccC
Confidence 999999985
No 17
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=100.00 E-value=5.9e-31 Score=232.28 Aligned_cols=213 Identities=20% Similarity=0.214 Sum_probs=154.8
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCc
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFP 162 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 162 (357)
+++||+++||++|+||+++|++++|+|+||+|||+|++|++.+.+.. +++|+||++|++.. +.+.++....|+
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~------ge~~lyvs~ee~~~-~i~~~~~~~g~~ 74 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM------GEPGIYVALEEHPV-QVRRNMAQFGWD 74 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc------CCcEEEEEeeCCHH-HHHHHHHHhCCC
Confidence 68999999999999999999999999999999999999999988742 58999999998533 233333332221
Q ss_pred hhhcccchHHHhhcCeEEeCCC----------------CHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCC
Q 035774 163 EIFHSKGMAQEMAGRILVLQPT----------------SLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP 226 (357)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~----------------~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~ 226 (357)
...+ ...+++.++++. +..++.+++..+...+...+.++||||||+.++...
T Consensus 75 ----~~~~--~~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~------ 142 (237)
T TIGR03877 75 ----VRKY--EEEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITK------ 142 (237)
T ss_pred ----HHHH--hhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCC------
Confidence 0000 011234444322 234566777777777778899999999999986531
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEE
Q 035774 227 GQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLE 306 (357)
Q Consensus 227 r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~ 306 (357)
....++++..|+++++++|+|+++++|.+..... ..+..+++.+|.+|.|+
T Consensus 143 -~~~~r~~l~~l~~~lk~~~~t~llt~~~~~~~~~----------------------------~~~~~~~~~~D~vI~L~ 193 (237)
T TIGR03877 143 -PAMARSIVMQLKRVLSGLGCTSIFVSQVSVGERG----------------------------FGGPGVEHAVDGIIRLD 193 (237)
T ss_pred -hHHHHHHHHHHHHHHHhCCCEEEEEECccccccc----------------------------ccccceEEEEeEEEEEE
Confidence 1234467788999999999999999987642110 00011356678888887
Q ss_pred Ee----CCeEEEEEEeCCCCCC--ceeEEEEcCCCceeccCCC
Q 035774 307 AK----SGQRFMNVEKSPTSPP--LAFSFTINPSGISLLTDDG 343 (357)
Q Consensus 307 ~~----~~~R~l~v~K~r~~~~--~~~~f~I~~~Gi~~~~~~~ 343 (357)
.. ...|+++|.|+|++++ +.++|+|+++||+++|..+
T Consensus 194 ~~~~~~~~~R~l~i~K~Rg~~~~~~~~~~~It~~Gi~v~~~~~ 236 (237)
T TIGR03877 194 LDEIDGELKRSLIVWKMRGTKHSMRRHPFEITDKGIIVYPDKV 236 (237)
T ss_pred EEeeCCceEEEEEEEECCCCCCCCceEEEEEcCCCEEEEeCCC
Confidence 54 2379999999999984 6789999999999998643
No 18
>PRK04328 hypothetical protein; Provisional
Probab=99.98 E-value=1e-30 Score=231.93 Aligned_cols=218 Identities=19% Similarity=0.204 Sum_probs=158.4
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc-
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS- 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~- 159 (357)
.++++||+++||++|+||+|+|++++|+|+||+|||+||+||+.+.+.. +++++||++|++ +..+.+.+..
T Consensus 2 ~~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~------ge~~lyis~ee~--~~~i~~~~~~~ 73 (249)
T PRK04328 2 VKRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM------GEPGVYVALEEH--PVQVRRNMRQF 73 (249)
T ss_pred CceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc------CCcEEEEEeeCC--HHHHHHHHHHc
Confidence 3579999999999999999999999999999999999999999998742 589999999985 3344433322
Q ss_pred cCchhhcccchHHHhhcCeEEeCCC----------------CHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCC
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPT----------------SLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ 223 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~----------------~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~ 223 (357)
.|. .... ...+++.+++.. +..++..++..+...+.+.++++|||||++.++...
T Consensus 74 g~d----~~~~--~~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~--- 144 (249)
T PRK04328 74 GWD----VRKY--EEEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTK--- 144 (249)
T ss_pred CCC----HHHH--hhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCC---
Confidence 221 0000 011234444332 234566777778888888899999999999986531
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEE
Q 035774 224 RAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL 303 (357)
Q Consensus 224 ~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl 303 (357)
....++++..|.++++++|+|+++|+|....... ..+...++.+|.++
T Consensus 145 ----~~~~r~~~~~l~~~lk~~g~t~llt~e~~~~~~~----------------------------~~~~~~~~~~D~vI 192 (249)
T PRK04328 145 ----PAMARSIVMQLKRVLSGLGCTAIFVSQVSVGERG----------------------------FGGPGVEHAVDGII 192 (249)
T ss_pred ----hHHHHHHHHHHHHHHHhCCCEEEEEECccccccc----------------------------cCCCCcEEEEEEEE
Confidence 1234466778888899999999999988642110 00011345678888
Q ss_pred EEEEe----CCeEEEEEEeCCCCCC--ceeEEEEcCCCceeccCCCceec
Q 035774 304 VLEAK----SGQRFMNVEKSPTSPP--LAFSFTINPSGISLLTDDGTEMV 347 (357)
Q Consensus 304 ~l~~~----~~~R~l~v~K~r~~~~--~~~~f~I~~~Gi~~~~~~~~~~~ 347 (357)
.|+.. ...|.++|.|+|++++ ..++|.|+++||+++|...+.+.
T Consensus 193 ~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~~~It~~Gi~v~~~~~~~~~ 242 (249)
T PRK04328 193 RLDLDEIDGELKRSLIVWKMRGTKHSMRRHPFEITDKGIVVYPDKVLKIT 242 (249)
T ss_pred EEEEEecCCcEEEEEEEEEccCCCCCCceEEEEEcCCCEEEEecceEEee
Confidence 88764 2378999999999984 67899999999999998776643
No 19
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.98 E-value=1.4e-30 Score=232.20 Aligned_cols=214 Identities=19% Similarity=0.263 Sum_probs=157.3
Q ss_pred CCCCCchhHHhhh--------------cCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCC
Q 035774 83 HLPTRLKGLDAAL--------------CGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148 (357)
Q Consensus 83 ~i~TG~~~LD~~l--------------~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~ 148 (357)
+++||+++||++| +||+|+|++++|+|+||+|||+||+|++.+.+.. +++|+||++|++.
T Consensus 3 ~~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~------Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 3 GVPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASR------GNPVLFVTVESPA 76 (259)
T ss_pred CccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC------CCcEEEEEecCCc
Confidence 6899999999999 5999999999999999999999999999998752 5899999999743
Q ss_pred ch--HHHHHHHhccCchhhcccchHHHhhcCeEEeCCCCH----HHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCC
Q 035774 149 TS--RRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSL----SEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHE 222 (357)
Q Consensus 149 ~~--~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~ 222 (357)
.. .++.+.+.. + ..+ .+...++++++++.+. .++.+++..+...+.++++++|||||++.++..
T Consensus 77 ~~~~~~l~~~a~~-~----g~d--~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~--- 146 (259)
T TIGR03878 77 NFVYTSLKERAKA-M----GVD--FDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEA--- 146 (259)
T ss_pred hHHHHHHHHHHHH-c----CCC--HHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhccc---
Confidence 21 233322221 1 110 1234567888776653 245566777777777889999999999988653
Q ss_pred CCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEE
Q 035774 223 QRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIR 302 (357)
Q Consensus 223 ~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~r 302 (357)
.....++++..|..+++++++|+++++|........ ...|+.+..+.+.+|.+
T Consensus 147 ----~~~~~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~~-----------------------~~~~~~~~~~~~l~D~v 199 (259)
T TIGR03878 147 ----KEMMAREIVRQLFNFMKKWYQTALFVSQKRSGHEEL-----------------------SAEAAGGYAVSHIVDGT 199 (259)
T ss_pred ----chHHHHHHHHHHHHHHHHcCCeEEEEeccccCcccc-----------------------cccccCCcceeEeeccE
Confidence 124456778888999999999999999875532100 00122233367888999
Q ss_pred EEEEE----------------eCCeEEEEEEeCCCCC--CceeEEEEcCCCceec
Q 035774 303 LVLEA----------------KSGQRFMNVEKSPTSP--PLAFSFTINPSGISLL 339 (357)
Q Consensus 303 l~l~~----------------~~~~R~l~v~K~r~~~--~~~~~f~I~~~Gi~~~ 339 (357)
|.|+. ....|+++|.|+|+++ ..+++|+|+++||..+
T Consensus 200 I~L~~~~~~~~~~~~~~~~~~~~~~R~l~I~KmRg~~h~~~~~~~~It~~Gi~~i 254 (259)
T TIGR03878 200 IVLAKQLIMSRFDASLYKKPIGEIVRLFRIDGCRMCGHDTKTHVLEIDETGLVKI 254 (259)
T ss_pred EEEeeeeccchhhhhhccccccceEEEEEEEEccCCCCCCceeEEEEcCCceEEe
Confidence 98873 1246999999999987 4778999999996655
No 20
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.97 E-value=1.2e-30 Score=235.73 Aligned_cols=216 Identities=26% Similarity=0.324 Sum_probs=168.4
Q ss_pred CCCCCCCchhHHhhhc-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 81 GGHLPTRLKGLDAALC-GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~-GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
...+|||++.||.+|+ ||+|+|.+++|+||||+|||+||++++++++.. ++.|+|||+|+.+++.++..+..
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~------g~~~vyId~E~~~~~~~a~~lGv- 105 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL------GGTVAFIDAEHALDPVYAKKLGV- 105 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc------CCCEEEECccccHHHHHHHHcCC-
Confidence 6789999999999999 999999999999999999999999999998742 58999999999988765544321
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCC-CCCCCCC------ChHHHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPG-VHEQRAP------GQHPLS 232 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~-~~~~~~~------r~~~~~ 232 (357)
..+++++.++.+.++...++. ..+.+..+++|||||++++++. +.++... +...+.
T Consensus 106 --------------d~~~l~v~~p~~~eq~l~i~~---~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~ 168 (325)
T cd00983 106 --------------DLDNLLISQPDTGEQALEIAD---SLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMS 168 (325)
T ss_pred --------------CHHHheecCCCCHHHHHHHHH---HHHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHH
Confidence 124577888887777655554 4456678999999999999863 3332211 123456
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC---
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS--- 309 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~--- 309 (357)
..++.|..++++++|++|+|||+....+ .+|. ....|.+|..|.+.+..|+.+++.+
T Consensus 169 ~~Lr~L~~~~~k~~~~vI~tNQvr~~ig---~~~g-----------------~~e~~~GG~~L~~~ss~rl~lrk~~~~k 228 (325)
T cd00983 169 QALRKLTGSINKSNTTVIFINQLREKIG---VMFG-----------------NPETTTGGNALKFYSSVRLDIRRIETIK 228 (325)
T ss_pred HHHHHHHHHHHhCCCEEEEEEccccccc---cccC-----------------CCccCCCchHHhhhcceEEEEEeecccc
Confidence 7888899999999999999999988654 1211 1235778888999999999998753
Q ss_pred -------CeEEEEEEeCCCCCC-ceeEEEEc-CCCceecc
Q 035774 310 -------GQRFMNVEKSPTSPP-LAFSFTIN-PSGISLLT 340 (357)
Q Consensus 310 -------~~R~l~v~K~r~~~~-~~~~f~I~-~~Gi~~~~ 340 (357)
..+.++|+|++..|+ ..++|.|. ++||.-..
T Consensus 229 ~~~~~~G~~~~~~v~Knk~~~p~~~~~~~i~~~~Gi~~~~ 268 (325)
T cd00983 229 DGDEVIGNRTKVKVVKNKVAPPFKTAEFDILFGEGISREG 268 (325)
T ss_pred cCCcccccEEEEEEEecccCCCCCceEEEEEcCcccchhh
Confidence 457899999999996 55789876 78887653
No 21
>PRK09354 recA recombinase A; Provisional
Probab=99.97 E-value=3e-30 Score=234.66 Aligned_cols=216 Identities=25% Similarity=0.327 Sum_probs=167.4
Q ss_pred CCCCCCCchhHHhhhc-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 81 GGHLPTRLKGLDAALC-GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~-GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
..++|||++.||.+|+ ||+|+|.+++|+|+||+|||+||++++++++.. ++.|+|||+|+++++.+...+...
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~------G~~~~yId~E~s~~~~~a~~lGvd 111 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA------GGTAAFIDAEHALDPVYAKKLGVD 111 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc------CCcEEEECCccchHHHHHHHcCCC
Confidence 6789999999999999 999999999999999999999999999998742 589999999999887654443211
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccC-CCCCCCCC------ChHHHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP-GVHEQRAP------GQHPLS 232 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~-~~~~~~~~------r~~~~~ 232 (357)
.+++++..+.+.++...++ ...+++..+++|||||++++++ .+.++... +...+.
T Consensus 112 ---------------ld~lli~qp~~~Eq~l~i~---~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms 173 (349)
T PRK09354 112 ---------------IDNLLVSQPDTGEQALEIA---DTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMS 173 (349)
T ss_pred ---------------HHHeEEecCCCHHHHHHHH---HHHhhcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHH
Confidence 2457777777776665444 4456677899999999999985 33332211 113455
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC---
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS--- 309 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~--- 309 (357)
..++.|..+++++||++|+|||+....+ .+|. ....|.+|..|.+.+.+|+.+++..
T Consensus 174 ~~Lr~L~~~l~k~~itvI~tNQvr~~ig---~~~g-----------------~pe~~~GG~aL~~~ss~rl~lrr~~~iK 233 (349)
T PRK09354 174 QALRKLTGNISKSNTTVIFINQIREKIG---VMFG-----------------NPETTTGGNALKFYASVRLDIRRIGTIK 233 (349)
T ss_pred HHHHHHHHHHHHcCcEEEEEEeeeeccc---cccC-----------------CCCcCCCchhhHhhheeeeEEecccccc
Confidence 6678899999999999999999988654 1111 1123667888999999999998742
Q ss_pred -------CeEEEEEEeCCCCCC-ceeEEEEc-CCCceecc
Q 035774 310 -------GQRFMNVEKSPTSPP-LAFSFTIN-PSGISLLT 340 (357)
Q Consensus 310 -------~~R~l~v~K~r~~~~-~~~~f~I~-~~Gi~~~~ 340 (357)
..+.++|+|++..|+ ..+.|.|. ++||.-..
T Consensus 234 ~~~~~~G~~~r~~vvKnk~~~p~~~a~~~i~~~~Gi~~~~ 273 (349)
T PRK09354 234 DGDEVIGNRTKVKVVKNKVAPPFKQAEFDIMYGEGISREG 273 (349)
T ss_pred cCCceecceEEEEEEecccCCCCCceEEEEEcCCccchhh
Confidence 467899999999997 56789988 89987654
No 22
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.97 E-value=5.5e-30 Score=237.65 Aligned_cols=213 Identities=19% Similarity=0.241 Sum_probs=161.0
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
..+++||+++||++|+||+++|++++|+|+||+|||+|+++++.+.+.. +++|+||++|++... +...+..
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~------g~~VlYvs~EEs~~q--i~~Ra~r- 131 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR------GGKVLYVSGEESPEQ--IKLRADR- 131 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc------CCeEEEEECCcCHHH--HHHHHHH-
Confidence 5689999999999999999999999999999999999999999988742 479999999986443 2221111
Q ss_pred CchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHH
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~ 240 (357)
+ . ...+++++....+.+++. ..+...++++|||||++.++....+....+..++++++..|++
T Consensus 132 l----g------~~~~~l~l~~e~~le~I~-------~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~ 194 (372)
T cd01121 132 L----G------ISTENLYLLAETNLEDIL-------ASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMR 194 (372)
T ss_pred c----C------CCcccEEEEccCcHHHHH-------HHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHH
Confidence 0 0 112455665554443333 2334568999999999999876544333455778899999999
Q ss_pred HHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC--CeEEEEEEe
Q 035774 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS--GQRFMNVEK 318 (357)
Q Consensus 241 la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~--~~R~l~v~K 318 (357)
+|+++++++++++|++++.. .++...++|.+|++++++.+. ..|.++++|
T Consensus 195 lak~~~itvilvghvtk~g~----------------------------~aG~~~leh~vD~Vi~le~~~~~~~R~Lri~K 246 (372)
T cd01121 195 FAKERNIPIFIVGHVTKEGS----------------------------IAGPKVLEHMVDTVLYFEGDRHSEYRILRSVK 246 (372)
T ss_pred HHHHcCCeEEEEeeccCCCc----------------------------ccCcccchhhceEEEEEEcCCCCcEEEEEEEe
Confidence 99999999999999977422 011123789999999998775 489999999
Q ss_pred CCCCCC-ceeEEEEcCCCceec-cCCCceec
Q 035774 319 SPTSPP-LAFSFTINPSGISLL-TDDGTEMV 347 (357)
Q Consensus 319 ~r~~~~-~~~~f~I~~~Gi~~~-~~~~~~~~ 347 (357)
+|+++. ....|+|+++||..+ ++..+++.
T Consensus 247 nR~g~~~ei~~F~i~~~Gl~~v~~ps~~fl~ 277 (372)
T cd01121 247 NRFGSTNELGVFEMRENGLREVSNPSELFLS 277 (372)
T ss_pred CCCCCCCCEEEEEECCCCeEEccChhhheec
Confidence 999885 447899999999964 45556554
No 23
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.8e-30 Score=229.55 Aligned_cols=211 Identities=21% Similarity=0.278 Sum_probs=172.2
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
..+++||+.+||++||||+-+|++++|.|.||.|||||++|++...+.+ ++|+|++.|++..+-+++.-...
T Consensus 72 ~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~-------~~vLYVsGEES~~QiklRA~RL~- 143 (456)
T COG1066 72 EPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-------GKVLYVSGEESLQQIKLRADRLG- 143 (456)
T ss_pred cccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhc-------CcEEEEeCCcCHHHHHHHHHHhC-
Confidence 5799999999999999999999999999999999999999999999853 49999999998776666542211
Q ss_pred CchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHH
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~ 240 (357)
...+++++....+.+++.+.++ +.+++++|||||+.++.+........-.++++....|.+
T Consensus 144 ------------~~~~~l~l~aEt~~e~I~~~l~-------~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~ 204 (456)
T COG1066 144 ------------LPTNNLYLLAETNLEDIIAELE-------QEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMR 204 (456)
T ss_pred ------------CCccceEEehhcCHHHHHHHHH-------hcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHH
Confidence 1125677777777666654443 468999999999999998776666667899999999999
Q ss_pred HHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe--CCeEEEEEEe
Q 035774 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK--SGQRFMNVEK 318 (357)
Q Consensus 241 la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~--~~~R~l~v~K 318 (357)
+||+.|++++++.|++++.. .++| +..+|++|++++|+.+ ...|.+|-+|
T Consensus 205 ~AK~~~i~~fiVGHVTKeG~----------------IAGP------------rvLEHmVDtVlyFEGd~~~~~RiLR~vK 256 (456)
T COG1066 205 LAKTKNIAIFIVGHVTKEGA----------------IAGP------------RVLEHMVDTVLYFEGDRHSRYRILRSVK 256 (456)
T ss_pred HHHHcCCeEEEEEEEccccc----------------ccCc------------hheeeeeeEEEEEeccCCCceeeeehhc
Confidence 99999999999999998633 2333 3368999999999986 5689999999
Q ss_pred CCCCCCce-eEEEEcCCCceeccC-CCcee
Q 035774 319 SPTSPPLA-FSFTINPSGISLLTD-DGTEM 346 (357)
Q Consensus 319 ~r~~~~~~-~~f~I~~~Gi~~~~~-~~~~~ 346 (357)
||+++..+ --|+.++.|+..... ..+|.
T Consensus 257 NRFG~t~EiGvFeM~~~GL~eV~npS~lFL 286 (456)
T COG1066 257 NRFGATNELGVFEMTENGLREVSNPSALFL 286 (456)
T ss_pred ccCCcccceeEEEEecCCeeEecCcHHhHh
Confidence 99999655 479999999987754 34444
No 24
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.97 E-value=1.3e-29 Score=241.63 Aligned_cols=213 Identities=19% Similarity=0.232 Sum_probs=160.6
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
..+++||+++||++|+||+++|++++|+|+||+|||+|++|++.+.+.. +++|+||++|+++.. +...+..
T Consensus 59 ~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~------g~~vlYvs~Ees~~q--i~~ra~r- 129 (446)
T PRK11823 59 EPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA------GGKVLYVSGEESASQ--IKLRAER- 129 (446)
T ss_pred CCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc------CCeEEEEEccccHHH--HHHHHHH-
Confidence 5689999999999999999999999999999999999999999988742 479999999986543 2221211
Q ss_pred CchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHH
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~ 240 (357)
+ .. ..+++++....+.+++ ...+.+.++++|||||++.++....++...+..++++++..|++
T Consensus 130 l----g~------~~~~l~~~~e~~l~~i-------~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~ 192 (446)
T PRK11823 130 L----GL------PSDNLYLLAETNLEAI-------LATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMR 192 (446)
T ss_pred c----CC------ChhcEEEeCCCCHHHH-------HHHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHH
Confidence 1 00 1234555555444333 23334568999999999999876554434456778889999999
Q ss_pred HHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEE--eCCeEEEEEEe
Q 035774 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA--KSGQRFMNVEK 318 (357)
Q Consensus 241 la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~--~~~~R~l~v~K 318 (357)
+++++++++++++|+++... .++...|+|.+|++++++. ....|.++++|
T Consensus 193 ~ak~~~itvilv~hvtk~~~----------------------------~ag~~~lehlvD~Vi~le~~~~~~~R~l~i~K 244 (446)
T PRK11823 193 LAKQRGIAVFLVGHVTKEGA----------------------------IAGPRVLEHMVDTVLYFEGDRHSRYRILRAVK 244 (446)
T ss_pred HHHHcCCEEEEEeeccCCCC----------------------------cCCcchhhhhCeEEEEEEcCCCCceEEEEEcc
Confidence 99999999999999976422 0111348999999999985 34689999999
Q ss_pred CCCCCC-ceeEEEEcCCCceec-cCCCceec
Q 035774 319 SPTSPP-LAFSFTINPSGISLL-TDDGTEMV 347 (357)
Q Consensus 319 ~r~~~~-~~~~f~I~~~Gi~~~-~~~~~~~~ 347 (357)
+|+++. ....|+|+++||... ++..+++.
T Consensus 245 ~R~g~~~e~~~f~it~~Gi~~v~~ps~~~~~ 275 (446)
T PRK11823 245 NRFGATNEIGVFEMTEQGLREVSNPSELFLS 275 (446)
T ss_pred CCCCCCCceEEEEEcCCCceECCCHHHHHhc
Confidence 998885 446899999999954 55556654
No 25
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=99.97 E-value=5.4e-30 Score=231.41 Aligned_cols=216 Identities=25% Similarity=0.324 Sum_probs=165.5
Q ss_pred CCCCCCCchhHHhhhc-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 81 GGHLPTRLKGLDAALC-GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~-GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
..++|||++.||.+|+ ||+|+|.+++|+||||+|||+||++++.+++.. +++|+|||+|+.+++.+...+..
T Consensus 33 ~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~------g~~v~yId~E~~~~~~~a~~lGv- 105 (321)
T TIGR02012 33 VETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA------GGTAAFIDAEHALDPVYARKLGV- 105 (321)
T ss_pred CceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc------CCcEEEEcccchhHHHHHHHcCC-
Confidence 6789999999999999 999999999999999999999999999998753 58999999999888764433221
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCC-CCCCCC------CChHHHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPG-VHEQRA------PGQHPLS 232 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~-~~~~~~------~r~~~~~ 232 (357)
..+++++.++.+.++.... +...+++..+++|||||++++++. +.++.. .+...+.
T Consensus 106 --------------d~~~l~v~~p~~~eq~l~~---~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~ 168 (321)
T TIGR02012 106 --------------DIDNLLVSQPDTGEQALEI---AETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMS 168 (321)
T ss_pred --------------CHHHeEEecCCCHHHHHHH---HHHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHH
Confidence 1246777887776665444 444556678999999999999853 333221 1123345
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe----
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK---- 308 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~---- 308 (357)
.+++.|..+++++||++|+|||+....+ .+|. ....|.+|..|.+.+..|+.+++.
T Consensus 169 ~~lr~L~~~l~~~~~tvi~tNQvr~~~g---~~~~-----------------~~e~~~GG~aL~~~ss~r~~lrr~~~iK 228 (321)
T TIGR02012 169 QALRKLTGALSKSNTTAIFINQIREKIG---VMFG-----------------NPETTTGGRALKFYASVRLDIRRIGQVK 228 (321)
T ss_pred HHHHHHHHHHHhCCCEEEEEecceeccC---cccC-----------------CCccCcCccHHHHHHhHhHhhhhhhccc
Confidence 6788899999999999999999987654 1111 112366777889999999888753
Q ss_pred ------CCeEEEEEEeCCCCCC-ceeEEEEc-CCCceecc
Q 035774 309 ------SGQRFMNVEKSPTSPP-LAFSFTIN-PSGISLLT 340 (357)
Q Consensus 309 ------~~~R~l~v~K~r~~~~-~~~~f~I~-~~Gi~~~~ 340 (357)
+..+.++|+||+..|+ ..++|.|. ++||.-..
T Consensus 229 ~~~~~~g~~~~~~v~Knk~~~p~~~~~~~i~~~~Gi~~~~ 268 (321)
T TIGR02012 229 QGEEVVGNRTKVKVVKNKVAPPFKEAEFDILYGEGISKLG 268 (321)
T ss_pred cCCceeccEEEEEEEECCCCCCCCceEEEEEcCCccchhh
Confidence 3568899999999996 56889988 89987654
No 26
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.97 E-value=1.2e-29 Score=222.82 Aligned_cols=212 Identities=25% Similarity=0.377 Sum_probs=152.5
Q ss_pred CCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCch
Q 035774 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163 (357)
Q Consensus 84 i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~ 163 (357)
++||+++||++|+||+|+|++++|.|+||+|||+|++|++.+.+.. . +++|+||++|++ ++.+.+.+.. +.
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~--~---ge~vlyvs~ee~--~~~l~~~~~s-~g- 71 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKN--F---GEKVLYVSFEEP--PEELIENMKS-FG- 71 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH--H---T--EEEEESSS---HHHHHHHHHT-TT-
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhh--c---CCcEEEEEecCC--HHHHHHHHHH-cC-
Confidence 5899999999999999999999999999999999999999998752 0 489999999884 4444443332 11
Q ss_pred hhcccchHHHhhcCeEEeCCCCH------HHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHH
Q 035774 164 IFHSKGMAQEMAGRILVLQPTSL------SEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISL 237 (357)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~ 237 (357)
++.... ...+++.+++..+. .++..++..+...+...++++|||||++.+... . ....++.++..
T Consensus 72 -~d~~~~--~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~-~-----~~~~~r~~l~~ 142 (226)
T PF06745_consen 72 -WDLEEY--EDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLY-D-----DPEELRRFLRA 142 (226)
T ss_dssp -S-HHHH--HHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTS-S-----SGGGHHHHHHH
T ss_pred -CcHHHH--hhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhc-C-----CHHHHHHHHHH
Confidence 111111 11234666655533 356677777778787788899999999999322 1 23556778888
Q ss_pred HHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhh-hccEEEEEEEe--C--CeE
Q 035774 238 ITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAH-AVTIRLVLEAK--S--GQR 312 (357)
Q Consensus 238 Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~-~~~~rl~l~~~--~--~~R 312 (357)
|...+++++++++++.|....... .....+.+ .+|..|.|+.. + ..|
T Consensus 143 l~~~l~~~~~t~llt~~~~~~~~~----------------------------~~~~~i~~~l~D~vI~L~~~~~~~~~~R 194 (226)
T PF06745_consen 143 LIKFLKSRGVTTLLTSEMPSGSED----------------------------DGTFGIEHYLADGVIELRYEEEGGRIRR 194 (226)
T ss_dssp HHHHHHHTTEEEEEEEEESSSSSS----------------------------SSSTSHHHHHSSEEEEEEEEEETTEEEE
T ss_pred HHHHHHHCCCEEEEEEccccCccc----------------------------ccccchhhhcccEEEEEEEEeeCCEEEE
Confidence 999999999999999986442110 01112566 89999999864 2 379
Q ss_pred EEEEEeCCCCC--CceeEEEEcCCCceeccC
Q 035774 313 FMNVEKSPTSP--PLAFSFTINPSGISLLTD 341 (357)
Q Consensus 313 ~l~v~K~r~~~--~~~~~f~I~~~Gi~~~~~ 341 (357)
.++|.|+|+++ ..+++|+|+++||+++++
T Consensus 195 ~l~I~K~Rg~~~~~~~~~f~I~~~Gi~i~~~ 225 (226)
T PF06745_consen 195 RLRIVKMRGSRHSTGIHPFEITPGGIEIYPP 225 (226)
T ss_dssp EEEEEEETTS----BEEEEEEETTEEEEETT
T ss_pred EEEEEEcCCCCCCCcEEEEEEECCeEEEecC
Confidence 99999999988 478999999999999985
No 27
>PRK08760 replicative DNA helicase; Provisional
Probab=99.97 E-value=1.2e-29 Score=243.37 Aligned_cols=236 Identities=14% Similarity=0.127 Sum_probs=166.5
Q ss_pred ccCCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHH
Q 035774 78 EHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157 (357)
Q Consensus 78 ~~~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~ 157 (357)
.....+++||++.||.+++ |+++|++++|+|+||+|||+|++++|.+++.. . +.+|+||+.|++.... +.++.
T Consensus 206 ~~~~~Gi~TG~~~LD~~t~-G~~~G~LivIaarPg~GKTafal~iA~~~a~~--~---g~~V~~fSlEMs~~ql-~~Rl~ 278 (476)
T PRK08760 206 GGNITGLPTGYNDFDAMTA-GLQPTDLIILAARPAMGKTTFALNIAEYAAIK--S---KKGVAVFSMEMSASQL-AMRLI 278 (476)
T ss_pred CCCCCcccCCcHHHHHHhc-CCCCCceEEEEeCCCCChhHHHHHHHHHHHHh--c---CCceEEEeccCCHHHH-HHHHH
Confidence 3346789999999999985 59999999999999999999999999998752 1 4789999999964431 11211
Q ss_pred hc--cCc--h----------hhcccchHHHhh-cCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCC
Q 035774 158 AS--SFP--E----------IFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHE 222 (357)
Q Consensus 158 ~~--~~~--~----------~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~ 222 (357)
.. .++ . +.........+. .++++.+.. ...+.++...++....++++++||||||+.+....
T Consensus 279 a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~-~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~-- 355 (476)
T PRK08760 279 SSNGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTP-GVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPG-- 355 (476)
T ss_pred HhhCCCcHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCC--
Confidence 11 010 0 000000111111 244554433 23455555666666667889999999999885332
Q ss_pred CCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEE
Q 035774 223 QRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIR 302 (357)
Q Consensus 223 ~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~r 302 (357)
...+|..++.++++.||.+|++++|+||+++|+++.... ..++.|..++++.|+. |++.+|++
T Consensus 356 ~~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~---------------r~~krP~lsDLreSg~--IeqdAD~v 418 (476)
T PRK08760 356 NSENRATEISEISRSLKGLAKELNVPVIALSQLNRSLET---------------RTDKRPVMADLRESGA--IEQDADMI 418 (476)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccc---------------cCCCCCCHHHHhhccc--hhcCCCEE
Confidence 224577889999999999999999999999999986542 1223445567776655 89999999
Q ss_pred EEEEEeC----------CeEEEEEEeCCCCCCceeEEEEcCCCceecc
Q 035774 303 LVLEAKS----------GQRFMNVEKSPTSPPLAFSFTINPSGISLLT 340 (357)
Q Consensus 303 l~l~~~~----------~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~~~ 340 (357)
++|+++. +...+.|.|+|.++.+.+.+.+...--.+.+
T Consensus 419 l~l~R~~~y~~~~~~~~~~~eliiaKnR~G~~g~~~l~f~~~~~~f~~ 466 (476)
T PRK08760 419 VFIYRDDYYNKENSPDKGLAEIIIGKHRGGPTGSCKLKFFGEYTRFDN 466 (476)
T ss_pred EEEechhhcccccccCCCceEEEEEccCCCCCceEEEEEecCCCceec
Confidence 9998742 2467999999999998888877665555544
No 28
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.97 E-value=3.1e-29 Score=239.00 Aligned_cols=213 Identities=18% Similarity=0.213 Sum_probs=160.3
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
..+++||+++||++|+||+++|++++|+|+||+|||+|++|++.+.+.. +++|+||++|++..+.+.+ +..
T Consensus 73 ~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~------g~kvlYvs~EEs~~qi~~r--a~r- 143 (454)
T TIGR00416 73 VPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN------QMKVLYVSGEESLQQIKMR--AIR- 143 (454)
T ss_pred cCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc------CCcEEEEECcCCHHHHHHH--HHH-
Confidence 5689999999999999999999999999999999999999999988742 4789999999865432221 111
Q ss_pred CchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHH
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~ 240 (357)
+ . ...+++++....+.+++ ...+.+.++++|||||++.++..+.........++++++..|.+
T Consensus 144 l----g------~~~~~l~~~~e~~~~~I-------~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~ 206 (454)
T TIGR00416 144 L----G------LPEPNLYVLSETNWEQI-------CANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMR 206 (454)
T ss_pred c----C------CChHHeEEcCCCCHHHH-------HHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHH
Confidence 1 0 01235566555544333 33344568999999999999876543333345678889999999
Q ss_pred HHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC--CeEEEEEEe
Q 035774 241 LAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS--GQRFMNVEK 318 (357)
Q Consensus 241 la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~--~~R~l~v~K 318 (357)
+|+++|+|+++++|+++... ..+ ...+++.+|.+++|+.+. ..|.++++|
T Consensus 207 ~ak~~giTvllt~hvtkeg~----------------~aG------------~~~le~lvD~VI~Le~~~~~~~R~L~v~K 258 (454)
T TIGR00416 207 LAKTRGIAIFIVGHVTKEGS----------------IAG------------PKVLEHMVDTVLYFEGDRDSRFRILRSVK 258 (454)
T ss_pred HHHHhCCEEEEEeccccCCc----------------cCC------------cccEeeeceEEEEEeccCCCcEEEEEEec
Confidence 99999999999999876421 001 123688999999998654 479999999
Q ss_pred CCCCCC-ceeEEEEcCCCce-eccCCCceec
Q 035774 319 SPTSPP-LAFSFTINPSGIS-LLTDDGTEMV 347 (357)
Q Consensus 319 ~r~~~~-~~~~f~I~~~Gi~-~~~~~~~~~~ 347 (357)
+|+++. ....|+|++.|+. +.++..+++.
T Consensus 259 ~R~g~~~e~~~f~it~~Gl~~v~~ps~~f~~ 289 (454)
T TIGR00416 259 NRFGATNEIGIFEMTEQGLREVLNPSAIFLS 289 (454)
T ss_pred CCCCCCCcEEEEEEecCCceecCChhHhhhc
Confidence 998885 4578999999996 6666677664
No 29
>PRK08006 replicative DNA helicase; Provisional
Probab=99.97 E-value=2.7e-29 Score=240.14 Aligned_cols=227 Identities=15% Similarity=0.143 Sum_probs=161.2
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCch--HHHHHHHh
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS--RRMIEMGA 158 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~--~rl~~~~~ 158 (357)
..+++||++.||.++ ||+.+|++++|+|+||+|||+|++++|.+++.. . +.+|+|||.||+... .|+.....
T Consensus 204 ~~Gi~TG~~~LD~~~-~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~--~---g~~V~~fSlEM~~~ql~~Rlla~~~ 277 (471)
T PRK08006 204 VTGVNTGYDDLNKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAML--Q---DKPVLIFSLEMPGEQIMMRMLASLS 277 (471)
T ss_pred CCcccCCCHHHHHhh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--c---CCeEEEEeccCCHHHHHHHHHHHhc
Confidence 578999999999998 579999999999999999999999999998752 1 478999999986433 22221111
Q ss_pred ccCc--hh----hcccch------HHHh-h-cCeEEeCCCCHHHHHHHHHHHHHHhhhc-CeeEEEEeccccccCCCCCC
Q 035774 159 SSFP--EI----FHSKGM------AQEM-A-GRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQ 223 (357)
Q Consensus 159 ~~~~--~~----~~~~~~------~~~~-~-~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvvIDsl~~l~~~~~~~ 223 (357)
.++ .. .....+ .... . .++++.+ .....+.++...+++...++ ++++||||||+.+.... .
T Consensus 278 -~v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d-~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~--~ 353 (471)
T PRK08006 278 -RVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDD-SSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPS--L 353 (471)
T ss_pred -CCCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCC--C
Confidence 010 00 000111 1122 1 2444444 33334455555555555555 69999999999875432 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEE
Q 035774 224 RAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL 303 (357)
Q Consensus 224 ~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl 303 (357)
..+|..++.++++.||.+|++++|+||+++|+++.... ..++.|..++++.|++ |++.+|+++
T Consensus 354 ~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~---------------r~dkrP~lsDLreSG~--IEqdAD~v~ 416 (471)
T PRK08006 354 SDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQ---------------RADKRPVNSDLRESGS--IEQDADLIM 416 (471)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccc---------------cCCCCCchhhhhhcCc--ccccCCEEE
Confidence 24577889999999999999999999999999997652 2234555677776666 899999999
Q ss_pred EEEEeC---------CeEEEEEEeCCCCCCceeEEEEcCC
Q 035774 304 VLEAKS---------GQRFMNVEKSPTSPPLAFSFTINPS 334 (357)
Q Consensus 304 ~l~~~~---------~~R~l~v~K~r~~~~~~~~f~I~~~ 334 (357)
+++++. +.-.+.|.|+|.++.+.+.|.+...
T Consensus 417 ~l~R~~~y~~~~~~~g~~elivaKnR~G~~G~v~l~f~~~ 456 (471)
T PRK08006 417 FIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQ 456 (471)
T ss_pred EEecccccccccCCCCceEEEEecccCCCCceEEEEEccC
Confidence 998753 3457899999999988877766543
No 30
>PRK09165 replicative DNA helicase; Provisional
Probab=99.97 E-value=3.2e-29 Score=242.00 Aligned_cols=243 Identities=15% Similarity=0.160 Sum_probs=166.5
Q ss_pred ccCCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCC---------CCCCeEEEEeCCCCC
Q 035774 78 EHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYG---------GLDGGVIYIDVESTF 148 (357)
Q Consensus 78 ~~~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~g---------g~~~~vl~i~~e~~~ 148 (357)
.+...+++||++.||.++ ||+.+|++++|+|+||+|||+|+++++.+++....++ ..+.+|+||++|++.
T Consensus 194 ~~~~~gi~TG~~~LD~~~-gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~ 272 (497)
T PRK09165 194 DGHLSGISTGLRDLDSKL-GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA 272 (497)
T ss_pred CCCCCcccCChHHHhhhc-CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence 334679999999999999 4799999999999999999999999999987532110 014789999999964
Q ss_pred chHHHHHHHh-ccCch-hhc-----ccc---h---HHHhh-cCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccc
Q 035774 149 TSRRMIEMGA-SSFPE-IFH-----SKG---M---AQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSME 214 (357)
Q Consensus 149 ~~~rl~~~~~-~~~~~-~~~-----~~~---~---~~~~~-~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~ 214 (357)
.....+-+.. ..++. ... ... + ...+. .++++.+ .....+.++...+++...++++++||||||+
T Consensus 273 ~ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d-~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLq 351 (497)
T PRK09165 273 EQLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDD-TPALSISQLRARARRLKRQHGLDLLVVDYLQ 351 (497)
T ss_pred HHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcchH
Confidence 4321111111 11110 000 000 0 11111 1344443 3333455566666666667889999999999
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchh
Q 035774 215 ALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFH 294 (357)
Q Consensus 215 ~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~ 294 (357)
.+.........+|.+++..+++.||.+|++++|+||+++|+++.... ..++.|..++++.|+.
T Consensus 352 li~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~---------------r~~krP~lsDLr~Sg~-- 414 (497)
T PRK09165 352 LIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQ---------------RDDKRPQLSDLRESGS-- 414 (497)
T ss_pred hccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhc---------------cCCCCCchhhhhhccc--
Confidence 88644221234577889999999999999999999999999987541 1233455567776655
Q ss_pred HhhhccEEEEEEEeC--------------------------CeEEEEEEeCCCCCCceeEEEEcCCCceec
Q 035774 295 WAHAVTIRLVLEAKS--------------------------GQRFMNVEKSPTSPPLAFSFTINPSGISLL 339 (357)
Q Consensus 295 w~~~~~~rl~l~~~~--------------------------~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~~ 339 (357)
+++.+|++++++++. +.-.+.|.|+|.++.+.+.|.+...--.+.
T Consensus 415 IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ivaKnR~G~~g~~~~~f~~~~~~f~ 485 (497)
T PRK09165 415 IEQDADVVMFVYREEYYLKRKEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPTGTVKLAFESEFTRFG 485 (497)
T ss_pred hhccCCEEEEEeehhhhccccccccccchhhhhhhhhcccCCceEEEEeccCCCCCeeEEEEEecCCCccc
Confidence 899999999998741 235688999999998887777665444443
No 31
>PRK07004 replicative DNA helicase; Provisional
Probab=99.97 E-value=3.3e-29 Score=239.64 Aligned_cols=232 Identities=17% Similarity=0.151 Sum_probs=163.0
Q ss_pred CCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 80 ~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
...+++||++.||++++ |+++|++++|+|+||+|||+|+++++.+++.. . +.+|+||++||+.... ..++...
T Consensus 192 ~~~gi~TG~~~LD~~t~-G~~~g~liviaarpg~GKT~~al~ia~~~a~~--~---~~~v~~fSlEM~~~ql-~~R~la~ 264 (460)
T PRK07004 192 DVTGTPTGFVDLDRMTS-GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVE--Y---GLPVAVFSMEMPGTQL-AMRMLGS 264 (460)
T ss_pred CCCCccCCcHHhccccc-CCCCCceEEEEeCCCCCccHHHHHHHHHHHHH--c---CCeEEEEeCCCCHHHH-HHHHHHh
Confidence 35689999999999986 79999999999999999999999999988752 2 4889999999964331 1222111
Q ss_pred --cCc------------hhhcccchHHHhhc-CeEEeCCCCHHHHHHHHHHHHHHhhhc-CeeEEEEeccccccCCCCCC
Q 035774 160 --SFP------------EIFHSKGMAQEMAG-RILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQ 223 (357)
Q Consensus 160 --~~~------------~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvvIDsl~~l~~~~~~~ 223 (357)
..+ ++.........+.+ ++++.+ ....++.++...+++...++ ++++||||||+.+.... .
T Consensus 265 ~~~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d-~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~--~ 341 (460)
T PRK07004 265 VGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDE-TGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSS--Q 341 (460)
T ss_pred hcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCC--C
Confidence 110 00000111122222 344433 33334455555555555554 58999999999886432 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEE
Q 035774 224 RAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL 303 (357)
Q Consensus 224 ~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl 303 (357)
..+|.+++.++++.||.||++++|+||+++|+++.... ..+..|..++++.|++ +++.+|+++
T Consensus 342 ~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~---------------r~~krP~lsDLreSg~--IeqdAD~v~ 404 (460)
T PRK07004 342 GENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQ---------------RPNKRPVMSDLRESGA--IEQDADVIL 404 (460)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhc---------------cCCCCCChHHHhcchh--hhhcCCEEE
Confidence 24577889999999999999999999999999986542 1233455567776665 999999999
Q ss_pred EEEEeC---------CeEEEEEEeCCCCCCceeEEEEcCCCcee
Q 035774 304 VLEAKS---------GQRFMNVEKSPTSPPLAFSFTINPSGISL 338 (357)
Q Consensus 304 ~l~~~~---------~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~ 338 (357)
+++++. +.-.+.|.|+|.++.+.+.+.+...=-.+
T Consensus 405 ~l~R~~~y~~~~~~~g~~e~ivaKnR~G~~G~v~l~f~~~~~~F 448 (460)
T PRK07004 405 FIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGPVRLTFLGQYTKF 448 (460)
T ss_pred EeccccccCCCcCCCCceEEEEEccCCCCCceEEEEEecCCCcc
Confidence 998753 24578999999999888877765543333
No 32
>PRK06321 replicative DNA helicase; Provisional
Probab=99.96 E-value=6.8e-29 Score=237.20 Aligned_cols=235 Identities=15% Similarity=0.153 Sum_probs=165.7
Q ss_pred CCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHh-
Q 035774 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA- 158 (357)
Q Consensus 80 ~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~- 158 (357)
...++|||+..||++++ |+++|++++|+|+||+|||+|+++++.+++.. . +.+|+|||.|++..... .++..
T Consensus 205 ~~~Gi~tG~~~LD~~t~-Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~--~---g~~v~~fSLEMs~~ql~-~Rlla~ 277 (472)
T PRK06321 205 MISGIPTHFIDLDKMIN-GFSPSNLMILAARPAMGKTALALNIAENFCFQ--N---RLPVGIFSLEMTVDQLI-HRIICS 277 (472)
T ss_pred CCCccccCcHHHHHHhc-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--c---CCeEEEEeccCCHHHHH-HHHHHh
Confidence 35799999999999996 69999999999999999999999999998742 1 47899999999643311 12211
Q ss_pred -ccCc-hhhc-----ccch------HHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCC-CCCC
Q 035774 159 -SSFP-EIFH-----SKGM------AQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGV-HEQR 224 (357)
Q Consensus 159 -~~~~-~~~~-----~~~~------~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~-~~~~ 224 (357)
...+ ..+. ...+ ...+.+..++++......+.++...++....++++++||||||+.+.... ....
T Consensus 278 ~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~ 357 (472)
T PRK06321 278 RSEVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNS 357 (472)
T ss_pred hcCCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCc
Confidence 1110 0000 0011 12222333444444333555666666666667889999999999875321 1122
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEE
Q 035774 225 APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLV 304 (357)
Q Consensus 225 ~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~ 304 (357)
.+|..++.++++.||.+|++++|+||+++|+++.... ..+..|..++++.|+. +++.+|++++
T Consensus 358 ~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~---------------r~~krP~lsDLReSG~--IEqdAD~v~~ 420 (472)
T PRK06321 358 ESRQTEISEISRMLKNLARELNIPILCLSQLSRKVED---------------RANHRPMMSDLRESGS--IEQDSDLVMF 420 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhc---------------cCCCCCCHHHHhhccc--ccccCCEEEE
Confidence 3467889999999999999999999999999987652 1233455567776555 8999999999
Q ss_pred EEEeC--------CeEEEEEEeCCCCCCceeEEEEcCCCcee
Q 035774 305 LEAKS--------GQRFMNVEKSPTSPPLAFSFTINPSGISL 338 (357)
Q Consensus 305 l~~~~--------~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~ 338 (357)
++++. +.-.+.|.|+|.++.+.+.|....+--.+
T Consensus 421 l~R~~~y~~~~~~~~~elivaKnR~G~~G~v~l~f~~~~~~f 462 (472)
T PRK06321 421 LLRREYYDPNDKPGTAELIVAKNRHGSIGSVPLVFEKEFARF 462 (472)
T ss_pred EechhhcCCcCCCCceEEEEEecCCCCCceEEEEEecCCCcc
Confidence 98742 34689999999999888877776544333
No 33
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=9.2e-29 Score=229.40 Aligned_cols=301 Identities=16% Similarity=0.145 Sum_probs=209.5
Q ss_pred HHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHH----hcCCCcccHHHHHHHHHhcccCCCCCCCCc
Q 035774 13 KSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSE----IVCPPFQTALLLMEQRAATEHLGGHLPTRL 88 (357)
Q Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~TG~ 88 (357)
++++|.|.+.|....+.........-.++++..+..+.++...... .+......+.+.+++...... ..++|||+
T Consensus 105 ~s~~R~Li~~~~~i~~~~~~~~~~~~~~~l~~ae~~i~~i~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~-~~Gi~tgf 183 (435)
T COG0305 105 KALLRELIEAGNEIVNLGYESEKDLDEEVLDAAEKKIFDVAERKNSEDFVHIGDLLKETMDEIEARFENGG-LIGVPTGF 183 (435)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhccCC-CcccccCc
Confidence 4567777777777665554433222234444445444444433111 011122344444555544444 78999999
Q ss_pred hhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc-cCc-----
Q 035774 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS-SFP----- 162 (357)
Q Consensus 89 ~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~-~~~----- 162 (357)
..||.+++| +.+|++++++|+||+|||+||+++|.+++.. .+.+|.+|+.||+......+-+... ...
T Consensus 184 ~~LD~~t~G-~~~~dLii~AaRP~mGKTafalnia~n~a~~-----~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~~kir 257 (435)
T COG0305 184 TDLDEITSG-FRPGDLIIVAARPGMGKTALALNIALNAAAD-----GRKPVAIFSLEMSEEQLVMRLLSSESGIESSKLR 257 (435)
T ss_pred hhhHHHhcC-CccCCEEEEccCCCCChHHHHHHHHHHHHHh-----cCCCeEEEEccCCHHHHHHHhhccccccchhccc
Confidence 999999976 9999999999999999999999999999873 2578999999996443221111111 000
Q ss_pred --h-----hhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHH
Q 035774 163 --E-----IFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHI 235 (357)
Q Consensus 163 --~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~ 235 (357)
. +.........+.+.-++++..+...+.++..++++...++++++++|||++.+...... .+|.+++.++.
T Consensus 258 tg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~~~--~~r~qevs~iS 335 (435)
T COG0305 258 TGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGKKS--ENRKQEVSEIS 335 (435)
T ss_pred cccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeecccccc--hhHHHHHHHHH
Confidence 0 00000111222233355666666677777888888888899999999999998776322 56889999999
Q ss_pred HHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC------
Q 035774 236 SLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS------ 309 (357)
Q Consensus 236 ~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~------ 309 (357)
+.||.+|++++|+|+.++|+++.... ..+.+|..++++.++. +++..|.+++++++.
T Consensus 336 r~LK~lAkEl~vpvialSQLsR~~E~---------------R~dkrP~lSDLRESGs--IEQDAD~VmflyRde~y~~~~ 398 (435)
T COG0305 336 RSLKGLAKELGVPVIALSQLNRSVEQ---------------RTDKRPMLSDLRESGA--LEQDADIVIFLHRDEAYLKDT 398 (435)
T ss_pred HHHHHHHHhcCCcEEehhhhcccchh---------------ccccCCccccCccCCc--hhhhCCEEEEEechhhccCCC
Confidence 99999999999999999999997662 3456677788888776 667889999998762
Q ss_pred ---CeEEEEEEeCCCCCCceeEEEEcCCCceec
Q 035774 310 ---GQRFMNVEKSPTSPPLAFSFTINPSGISLL 339 (357)
Q Consensus 310 ---~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~~ 339 (357)
+.-.+.|.|+|++|.+.+.+.+..+...+.
T Consensus 399 ~~~g~aeiIi~K~RnGp~GtV~l~f~~~~~~F~ 431 (435)
T COG0305 399 PDRGEAEVIVAKNRNGPTGTVKLAFDPQFTKFK 431 (435)
T ss_pred CCCceEEEEEEeccCCCCceEEEEEeccccccc
Confidence 456899999999999988888877765543
No 34
>PRK06904 replicative DNA helicase; Validated
Probab=99.96 E-value=5e-29 Score=238.69 Aligned_cols=234 Identities=13% Similarity=0.125 Sum_probs=163.2
Q ss_pred CCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCch--HHHHHHH
Q 035774 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS--RRMIEMG 157 (357)
Q Consensus 80 ~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~--~rl~~~~ 157 (357)
...+++||++.||.++ ||+++|++++|+|+||+|||+|++++|.+++.. . +.+|+|||.||+... .|+....
T Consensus 200 ~~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~--~---g~~Vl~fSlEMs~~ql~~Rlla~~ 273 (472)
T PRK06904 200 GVTGVTTGFTDLDKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA--S---EKPVLVFSLEMPAEQIMMRMLASL 273 (472)
T ss_pred CCCCccCChHHHHHHH-hccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--c---CCeEEEEeccCCHHHHHHHHHHhh
Confidence 4679999999999998 579999999999999999999999999998752 1 478999999996433 2221111
Q ss_pred hccCc--h-----hhcccch------HHHhh--cCeEEeCCCCHHHHHHHHHHHHHHhhhc-CeeEEEEeccccccCCCC
Q 035774 158 ASSFP--E-----IFHSKGM------AQEMA--GRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVH 221 (357)
Q Consensus 158 ~~~~~--~-----~~~~~~~------~~~~~--~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvvIDsl~~l~~~~~ 221 (357)
. ..+ . .+....+ ...+. .++++.+..+ ..+.++...+++....+ ++++||||||+.+.....
T Consensus 274 s-~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~-~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~ 351 (472)
T PRK06904 274 S-RVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSG-LTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGF 351 (472)
T ss_pred C-CCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCC
Confidence 0 000 0 0111111 11221 2355544332 23444455555554443 699999999998854421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccE
Q 035774 222 EQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTI 301 (357)
Q Consensus 222 ~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~ 301 (357)
..+|..+++++++.||.+|++++|+||+++|+++.... ..++.|..++++.|+. +++.+|+
T Consensus 352 --~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~---------------r~~krP~lsDLreSG~--IEqdAD~ 412 (472)
T PRK06904 352 --EDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLEN---------------RGDKRPVNSDLRESGS--IEQDADL 412 (472)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhc---------------cCCCCCchHHHhhcCc--cccCCcE
Confidence 23477889999999999999999999999999986542 1233455567776655 8899999
Q ss_pred EEEEEEeC----------CeEEEEEEeCCCCCCceeEEEEcCCCceecc
Q 035774 302 RLVLEAKS----------GQRFMNVEKSPTSPPLAFSFTINPSGISLLT 340 (357)
Q Consensus 302 rl~l~~~~----------~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~~~ 340 (357)
+++++++. +.-.+.|.|+|.++.+.+.|.+...--.+.+
T Consensus 413 v~~l~R~~~y~~~~~~~~~~~elivaKnR~G~~G~v~l~f~~~~~~f~~ 461 (472)
T PRK06904 413 IMFIYRDEVYNETTEDNKGVAEIIIGKQRNGPIGRVRLAFQGQYSRFDN 461 (472)
T ss_pred EEEEeccccccCccccCCCceEEEEeccCCCCCceEEEEEccCCCCccc
Confidence 99998762 2357899999999998888777665544443
No 35
>PHA02542 41 41 helicase; Provisional
Probab=99.96 E-value=3.8e-28 Score=231.86 Aligned_cols=240 Identities=16% Similarity=0.167 Sum_probs=162.7
Q ss_pred cHHHHHHHHHhc-ccCCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 66 TALLLMEQRAAT-EHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 66 ~~~~~~~~~~~~-~~~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
...+.++++... .....++|||++.||.+++||+++|++++|+|+||+|||+|++++|.+++.. +.+|+|||+
T Consensus 153 ~~~~~ie~~~~~~~~~~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~------g~~Vl~fSL 226 (473)
T PHA02542 153 DYFEDYEERYDSYQSKANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQ------GYNVLYISM 226 (473)
T ss_pred HHHHHHHHHHhhccCCCCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhc------CCcEEEEec
Confidence 344445553211 2236799999999999998899999999999999999999999999998742 589999999
Q ss_pred CCCCchH--HHHHHHhccCc--hhhc--ccchH------HH-hhcCeEEeC-CC---CHHHHHHHHHHHHHHhhhc--Ce
Q 035774 145 ESTFTSR--RMIEMGASSFP--EIFH--SKGMA------QE-MAGRILVLQ-PT---SLSEFTESLEKIKVSLLQN--QV 205 (357)
Q Consensus 145 e~~~~~~--rl~~~~~~~~~--~~~~--~~~~~------~~-~~~~i~~~~-~~---~~~~~~~~l~~l~~~~~~~--~~ 205 (357)
|++.... |+.... ...+ .... ...+. .. ...++++.. +. +..++...+.++ ..++ ++
T Consensus 227 EM~~~ql~~Rl~a~~-~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrl---k~~~g~~~ 302 (473)
T PHA02542 227 EMAEEVIAKRIDANL-LDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNEL---KLKKNFKP 302 (473)
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHH---HHhcCCCC
Confidence 9964432 221111 1111 1100 00110 11 123454432 22 334554444444 3334 48
Q ss_pred eEEEEeccccccCCCCC-CCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCC
Q 035774 206 KLLVIDSMEALVPGVHE-QRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYY 284 (357)
Q Consensus 206 ~lvvIDsl~~l~~~~~~-~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (357)
++||||||+.+...... ...+|..++.++++.||.||++++|+||+++|+++..... .+ |..
T Consensus 303 dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r---------------~d--P~l 365 (473)
T PHA02542 303 DVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDS---------------SD--VDM 365 (473)
T ss_pred CEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCcccccc---------------CC--Ccc
Confidence 99999999988633211 2245788999999999999999999999999999975521 11 445
Q ss_pred cceecccchhHhhhccEEEEEEEeC-----CeEEEEEEeCCCCCCc---eeEEEEcCC
Q 035774 285 SHIVAVLGFHWAHAVTIRLVLEAKS-----GQRFMNVEKSPTSPPL---AFSFTINPS 334 (357)
Q Consensus 285 ~~~~palg~~w~~~~~~rl~l~~~~-----~~R~l~v~K~r~~~~~---~~~f~I~~~ 334 (357)
++++.|+. +++.+|++++|+++. +...+.|.|+|+++.+ .+.+.+..+
T Consensus 366 sDLreSG~--IEqdAD~vl~l~r~~~~~~~~~~eliv~KnR~G~~g~~g~v~l~f~~~ 421 (473)
T PHA02542 366 SDTAESAG--LPATADFMLAVIETEELAQMGQQLVKQLKSRYGDKNKFNKFLMGVDKG 421 (473)
T ss_pred hhcccccc--hHhhcCEEEEEecCcccccCCeEEEEEecCCCCCCCCceEEEEEEECC
Confidence 67777666 889999999998854 4678999999999965 555555443
No 36
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.96 E-value=3.1e-28 Score=232.70 Aligned_cols=223 Identities=16% Similarity=0.154 Sum_probs=154.8
Q ss_pred CCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 80 ~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
...+++||++.||.+++ |+.+|++++|+|+||+|||+|+++++.+++.. .+.+|+|||+|++.... +.++...
T Consensus 173 ~~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~-----~g~~v~~fSlEm~~~~l-~~Rl~~~ 245 (421)
T TIGR03600 173 ELTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALR-----EGKPVLFFSLEMSAEQL-GERLLAS 245 (421)
T ss_pred CCcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCcEEEEECCCCHHHH-HHHHHHH
Confidence 35789999999999997 79999999999999999999999999988742 14889999999853321 1121111
Q ss_pred --cCc--hh----hc------ccchHHHhh-cCeEEeCCCCHHHHHHHHHHHHHHhhhc-CeeEEEEeccccccCCCCCC
Q 035774 160 --SFP--EI----FH------SKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQ 223 (357)
Q Consensus 160 --~~~--~~----~~------~~~~~~~~~-~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvvIDsl~~l~~~~~~~ 223 (357)
..+ .. .. .......+. .++++.+. ...++.++...+++...++ ++++||||||+.+... .
T Consensus 246 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~-~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~---~ 321 (421)
T TIGR03600 246 KSGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDT-GGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPT---R 321 (421)
T ss_pred HcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECC-CCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCC---C
Confidence 111 00 00 000111111 24554443 2234445555555555455 7999999999998653 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEE
Q 035774 224 RAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL 303 (357)
Q Consensus 224 ~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl 303 (357)
..+|...+..+++.||.+|++++|+||+++|+++.... ..+..|..++++.|+. +++.+|+++
T Consensus 322 ~~~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~---------------r~~krp~lsdlr~Sg~--Ieq~AD~v~ 384 (421)
T TIGR03600 322 GRDRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEK---------------RTDKRPIMSDLRDSGA--IEQDADVIG 384 (421)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhh---------------cCCCCCChHHHhhcCC--ccccCcEEE
Confidence 23467889999999999999999999999999886542 1123344456665554 788899999
Q ss_pred EEEEeC---------CeEEEEEEeCCCCCCceeEEE
Q 035774 304 VLEAKS---------GQRFMNVEKSPTSPPLAFSFT 330 (357)
Q Consensus 304 ~l~~~~---------~~R~l~v~K~r~~~~~~~~f~ 330 (357)
+++++. +.-.+.|.|+|.++.+.+.+.
T Consensus 385 ~l~R~~~~~~~~~~~~~~el~v~K~R~G~~g~~~l~ 420 (421)
T TIGR03600 385 LIHREGYYDAREPPAGVAELILAKNRHGPTGTVELL 420 (421)
T ss_pred EeccccccCCccCCCCceEEEEECCCCCCCceEEec
Confidence 998753 345799999999998877653
No 37
>PRK08840 replicative DNA helicase; Provisional
Probab=99.96 E-value=2.3e-28 Score=233.31 Aligned_cols=233 Identities=13% Similarity=0.118 Sum_probs=163.6
Q ss_pred CCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCch--HHHHHHH
Q 035774 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS--RRMIEMG 157 (357)
Q Consensus 80 ~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~--~rl~~~~ 157 (357)
...+++||++.||.+++ |+.+|++++|+|+||+|||+|++++|.+++.. . +.+|+|||.|++... .|+....
T Consensus 196 ~~~gi~TG~~~LD~~~~-G~~~g~LiviaarPg~GKTafalnia~~~a~~--~---~~~v~~fSlEMs~~ql~~Rlla~~ 269 (464)
T PRK08840 196 GVTGVDTGFTDLNKKTA-GLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--Q---DKPVLIFSLEMPAEQLMMRMLASL 269 (464)
T ss_pred CCCCcCCCcHHHHHhhc-CCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--C---CCeEEEEeccCCHHHHHHHHHHhh
Confidence 36789999999999985 69999999999999999999999999998752 1 478999999996433 1221111
Q ss_pred hccCc--hh----hcccch------HHHhh--cCeEEeCCCCHHHHHHHHHHHHHHhhhc-CeeEEEEeccccccCCCCC
Q 035774 158 ASSFP--EI----FHSKGM------AQEMA--GRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHE 222 (357)
Q Consensus 158 ~~~~~--~~----~~~~~~------~~~~~--~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvvIDsl~~l~~~~~~ 222 (357)
. ..+ .. .....+ ...+. .++++.+. ....+.++...+++...++ ++++||||||+.+.....
T Consensus 270 s-~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~-~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~- 346 (464)
T PRK08840 270 S-RVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDS-SGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPAL- 346 (464)
T ss_pred C-CCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECC-CCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCC-
Confidence 1 010 00 000011 11221 24555443 2233445555665655554 599999999998853321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEE
Q 035774 223 QRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIR 302 (357)
Q Consensus 223 ~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~r 302 (357)
..+|.+++.++++.||.+|+++||+||+++|+++.... ...+.|..++++.|+. +++.+|++
T Consensus 347 -~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~---------------r~~krP~lsDLreSG~--IEqdAD~v 408 (464)
T PRK08840 347 -SDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQ---------------RADKRPVNSDLRESGS--IEQDADLI 408 (464)
T ss_pred -CCchHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccc---------------cCCCCCchHhhhhccc--ccccCCEE
Confidence 23477889999999999999999999999999987552 1233445566776655 89999999
Q ss_pred EEEEEeC---------CeEEEEEEeCCCCCCceeEEEEcCCCceec
Q 035774 303 LVLEAKS---------GQRFMNVEKSPTSPPLAFSFTINPSGISLL 339 (357)
Q Consensus 303 l~l~~~~---------~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~~ 339 (357)
++++++. +.-.+.|.|+|.++.+.+.|.+...--.+.
T Consensus 409 ~~l~R~~~y~~~~~~~~~~elivaKnR~G~~G~v~l~f~~~~~~f~ 454 (464)
T PRK08840 409 MFIYRDEVYNPDSPLKGTAEIIIGKQRNGPIGSVRLTFQGQYSRFD 454 (464)
T ss_pred EEEecccccCCCcCCCCceEEEEecccCCCCceEEEEEecCccccc
Confidence 9999862 346789999999998888887765554444
No 38
>PRK05748 replicative DNA helicase; Provisional
Probab=99.96 E-value=1.8e-28 Score=235.64 Aligned_cols=233 Identities=16% Similarity=0.148 Sum_probs=161.6
Q ss_pred CCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHH-h
Q 035774 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG-A 158 (357)
Q Consensus 80 ~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~-~ 158 (357)
...+++||++.||.+++ |+++|++++|+|+||+|||+|+++++.+++.. . +.+|+||++|++.... +.++. .
T Consensus 182 ~~~gi~TG~~~LD~~~~-G~~~G~livIaarpg~GKT~~al~ia~~~a~~--~---g~~v~~fSlEms~~~l-~~R~l~~ 254 (448)
T PRK05748 182 DITGIPTGFTDLDKMTS-GLQPNDLIIVAARPSVGKTAFALNIAQNVATK--T---DKNVAIFSLEMGAESL-VMRMLCA 254 (448)
T ss_pred CCCCccCChHHHHHhcC-CCCCCceEEEEeCCCCCchHHHHHHHHHHHHh--C---CCeEEEEeCCCCHHHH-HHHHHHH
Confidence 46789999999999986 79999999999999999999999999998752 1 4789999999964432 12221 1
Q ss_pred -ccCchh-h-----cccc------hHHHhhc-CeEEeCCCCHHHHHHHHHHHHHHhhhc-CeeEEEEeccccccCCCCCC
Q 035774 159 -SSFPEI-F-----HSKG------MAQEMAG-RILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQ 223 (357)
Q Consensus 159 -~~~~~~-~-----~~~~------~~~~~~~-~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvvIDsl~~l~~~~~~~ 223 (357)
...+.. . .... ......+ ++++.+ .....+.++...+++...++ ++++||||||+.+.... ..
T Consensus 255 ~~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d-~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~-~~ 332 (448)
T PRK05748 255 EGNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDD-TPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSG-RS 332 (448)
T ss_pred hcCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCC-CC
Confidence 111100 0 0000 1111222 344433 32234455556666666666 79999999999885332 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEE
Q 035774 224 RAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL 303 (357)
Q Consensus 224 ~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl 303 (357)
..+|...+.++++.||.+|++++|+||+++|+++.... ..+..+..++++.|+. +++.+|+++
T Consensus 333 ~~~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~---------------r~~k~p~lsdlr~Sg~--Ieq~AD~v~ 395 (448)
T PRK05748 333 GENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQ---------------RQDKRPVMSDIRESGS--IEQDADIVA 395 (448)
T ss_pred CcCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhh---------------cCCCCCChHHHHhhcc--hhcCCCEEE
Confidence 23467889999999999999999999999999886431 1123344456665544 888899999
Q ss_pred EEEEeC---------CeEEEEEEeCCCCCCceeEEEEcCCCcee
Q 035774 304 VLEAKS---------GQRFMNVEKSPTSPPLAFSFTINPSGISL 338 (357)
Q Consensus 304 ~l~~~~---------~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~ 338 (357)
+|+++. +.-.+.|.|+|.++.+.+.|.+...--.+
T Consensus 396 ~l~r~~~~~~~~~~~~~~e~~v~K~R~G~~g~~~~~~~~~~~~f 439 (448)
T PRK05748 396 FLYRDDYYDEETENKNTIEIIIAKQRNGPVGTVELAFQKEYNKF 439 (448)
T ss_pred EEecccccCccccCCCceEEEEeccCCCCCceEEEEEeCCCCcc
Confidence 998753 24578999999999888887776554443
No 39
>PRK05636 replicative DNA helicase; Provisional
Probab=99.96 E-value=1.4e-28 Score=236.62 Aligned_cols=231 Identities=15% Similarity=0.191 Sum_probs=162.1
Q ss_pred CCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchH--HHHHHH
Q 035774 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSR--RMIEMG 157 (357)
Q Consensus 80 ~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~--rl~~~~ 157 (357)
...+++||++.||.++ ||+.+|++++|+|+||+|||+|++++|.+++.. . +.+|+||+.|++.... |+....
T Consensus 244 ~~~Gi~TG~~~LD~~t-~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~--~---g~~v~~fSlEMs~~ql~~R~ls~~ 317 (505)
T PRK05636 244 IATGIPTGFKDLDDLT-NGLRGGQMIIVAARPGVGKSTLALDFMRSASIK--H---NKASVIFSLEMSKSEIVMRLLSAE 317 (505)
T ss_pred CCCceecChHHHhhhc-CCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--C---CCeEEEEEeeCCHHHHHHHHHHHh
Confidence 3578999999999987 569999999999999999999999999988752 1 4789999999964332 221111
Q ss_pred hc---------cCc--hhhcccchHHHhhc-CeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCC
Q 035774 158 AS---------SFP--EIFHSKGMAQEMAG-RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA 225 (357)
Q Consensus 158 ~~---------~~~--~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~ 225 (357)
.. .+. ++.........+.+ ++++.+ .....+.++...+++...++++++||||||+.+... ....
T Consensus 318 s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d-~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~--~~~~ 394 (505)
T PRK05636 318 AEVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDD-SANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSG--KRVE 394 (505)
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCC--CCCC
Confidence 00 000 00000011112222 345443 333345555566666666788999999999988532 1224
Q ss_pred CChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEE
Q 035774 226 PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVL 305 (357)
Q Consensus 226 ~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l 305 (357)
+|.+++.++++.||.||++++|+||+++|+++.... ..+..+..++++.|+. +++.+|++++|
T Consensus 395 ~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~---------------r~dkrP~lsDLreSG~--IEqdAD~vl~l 457 (505)
T PRK05636 395 SRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPES---------------RTDKRPQLADLRESGS--LEQDADMVMLL 457 (505)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccc---------------cCCCCCcHHHHhhccc--ccccCCEEEEE
Confidence 477889999999999999999999999999987552 1223445566776655 88999999999
Q ss_pred EEeC---------CeEEEEEEeCCCCCCceeEEEEcCCCc
Q 035774 306 EAKS---------GQRFMNVEKSPTSPPLAFSFTINPSGI 336 (357)
Q Consensus 306 ~~~~---------~~R~l~v~K~r~~~~~~~~f~I~~~Gi 336 (357)
+++. +.-.+.|.|+|.++.+.+.+.+..+--
T Consensus 458 ~R~~~y~~~~~~~g~~elivaK~RnG~~Gtv~l~f~~~~~ 497 (505)
T PRK05636 458 YRPDSQDKDDERAGEADIILAKHRGGPIDTVQVAHQLHYS 497 (505)
T ss_pred ecccccCCccCCCCceEEEEecCCCCCCceEEEEeecCcc
Confidence 8752 246799999999998887776655433
No 40
>PRK05595 replicative DNA helicase; Provisional
Probab=99.96 E-value=4.2e-28 Score=232.54 Aligned_cols=234 Identities=15% Similarity=0.170 Sum_probs=164.9
Q ss_pred cCCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCch--HHHHHH
Q 035774 79 HLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS--RRMIEM 156 (357)
Q Consensus 79 ~~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~--~rl~~~ 156 (357)
....+++||++.||.++ ||+.+|++++|+|+||+|||+|+++++.+++.. . +.+|+||++|++... .|+...
T Consensus 179 ~~~~gi~tg~~~ld~~~-~G~~~g~liviaarpg~GKT~~al~ia~~~a~~--~---g~~vl~fSlEms~~~l~~R~~a~ 252 (444)
T PRK05595 179 GETTGVASGFRELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAALR--E---GKSVAIFSLEMSKEQLAYKLLCS 252 (444)
T ss_pred CCCCcccCChHHHHHhc-CCCCCCcEEEEEecCCCChHHHHHHHHHHHHHH--c---CCcEEEEecCCCHHHHHHHHHHH
Confidence 33568999999999998 579999999999999999999999999987642 1 478999999995432 121111
Q ss_pred HhccCc-hhhc-----ccc---h---HHHh-hcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCC
Q 035774 157 GASSFP-EIFH-----SKG---M---AQEM-AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ 223 (357)
Q Consensus 157 ~~~~~~-~~~~-----~~~---~---~~~~-~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~ 223 (357)
.. ..+ ..+. ... + ...+ ..++++.+..+ ..+.++...+++...++++++||||||+.+.... .
T Consensus 253 ~~-~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~-~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~--~ 328 (444)
T PRK05595 253 EA-NVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAG-VSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGK--G 328 (444)
T ss_pred hc-CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCC--C
Confidence 11 111 0000 000 1 1111 12455544433 3455556666666667889999999999885331 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEE
Q 035774 224 RAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL 303 (357)
Q Consensus 224 ~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl 303 (357)
..+|..++.++++.||.+|++++|+|++++|+++.... ..+..|..++++.|++ +++.+|+++
T Consensus 329 ~~~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~---------------r~~~rP~lsdlr~Sg~--Ieq~AD~vl 391 (444)
T PRK05595 329 SESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQ---------------RADHRPMLSDLRESGS--IEQDADVVM 391 (444)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhc---------------cCCCCCchhhhhhhcc--cccCCCEEE
Confidence 24577889999999999999999999999999986542 1233455567776655 888999999
Q ss_pred EEEEeC---------CeEEEEEEeCCCCCCceeEEEEcCCCceec
Q 035774 304 VLEAKS---------GQRFMNVEKSPTSPPLAFSFTINPSGISLL 339 (357)
Q Consensus 304 ~l~~~~---------~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~~ 339 (357)
+++++. +.-.+.|.|+|.++.+.+.|.....--.+.
T Consensus 392 ~l~r~~~~~~~~~~~~~~e~iv~K~R~G~~g~~~~~~~~~~~~f~ 436 (444)
T PRK05595 392 FLYRDEYYNKETEDKNVAECIIAKQRNGPTGTVKLAWLGQYSKFG 436 (444)
T ss_pred EEecccccccccCCCCceEEEEEccCCCCCceEEEEEecCCCccc
Confidence 998753 246899999999999888887766554443
No 41
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.96 E-value=9.4e-28 Score=237.22 Aligned_cols=210 Identities=24% Similarity=0.285 Sum_probs=165.7
Q ss_pred CCCCCCCchhHHhhhc-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 81 GGHLPTRLKGLDAALC-GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~-GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
...++||++.||.+|+ ||+++|.+++|+|+||+|||+||++++.+++.. +++|+||++|+++.+.+..++...
T Consensus 38 v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~------G~~v~yId~E~t~~~~~A~~lGvD 111 (790)
T PRK09519 38 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA------GGVAAFIDAEHALDPDYAKKLGVD 111 (790)
T ss_pred CceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc------CCcEEEECCccchhHHHHHHcCCC
Confidence 6689999999999998 899999999999999999999999999988742 589999999999887655544321
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccC-CCCCCCCC------ChHHHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP-GVHEQRAP------GQHPLS 232 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~-~~~~~~~~------r~~~~~ 232 (357)
.+++++..+.+.++.... +...+.+.++++|||||++++++ .++++... +.+.+.
T Consensus 112 ---------------l~~llv~~~~~~E~~l~~---i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~ 173 (790)
T PRK09519 112 ---------------TDSLLVSQPDTGEQALEI---ADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMS 173 (790)
T ss_pred ---------------hhHeEEecCCCHHHHHHH---HHHHhhcCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHH
Confidence 234567777777665443 44556667899999999999994 44433221 123345
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe----
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK---- 308 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~---- 308 (357)
.+++.|..+++++|+++|+|||+....+ .+|. ...+|.+|+.|.|...+||.+.+.
T Consensus 174 q~L~~L~~~l~~~nvtvi~TNQv~~~~g---~~fg-----------------~p~~~~GG~~l~h~ss~Ri~lrk~~~ik 233 (790)
T PRK09519 174 QALRKMTGALNNSGTTAIFINQLRDKIG---VMFG-----------------SPETTTGGKALKFYASVRMDVRRVETLK 233 (790)
T ss_pred HHHHHHHHHHHhCCCEEEEEecceecCC---CcCC-----------------CCCcCCCCcccceeccEEEEeeeccccc
Confidence 7888899999999999999999988655 1221 123577888899999999999973
Q ss_pred ------CCeEEEEEEeCCCCCCceeEEEEcCC
Q 035774 309 ------SGQRFMNVEKSPTSPPLAFSFTINPS 334 (357)
Q Consensus 309 ------~~~R~l~v~K~r~~~~~~~~f~I~~~ 334 (357)
+..|.++|+||++.|..+..|.++.+
T Consensus 234 ~~~~~~G~~~~~kv~ks~cLpe~e~v~~i~tG 265 (790)
T PRK09519 234 DGTNAVGNRTRVKVVKNKCLAEGTRIFDPVTG 265 (790)
T ss_pred cCccccceEEEEEEEECCCCCCceEEEEecCC
Confidence 56899999999999988889999743
No 42
>PRK06749 replicative DNA helicase; Provisional
Probab=99.96 E-value=1.1e-27 Score=226.87 Aligned_cols=229 Identities=14% Similarity=0.160 Sum_probs=159.8
Q ss_pred cCCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHh
Q 035774 79 HLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA 158 (357)
Q Consensus 79 ~~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~ 158 (357)
....+++||++.||.+++ |+.+|++++|+|+||+|||+|+++++.+++.. +.+|+||+.|++.... ..++..
T Consensus 164 ~~~~Gi~TG~~~LD~~t~-Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~------g~~v~~fSlEMs~~ql-~~R~ls 235 (428)
T PRK06749 164 KEITGIETGYTSLNKMTC-GLQEGDFVVLGARPSMGKTAFALNVGLHAAKS------GAAVGLFSLEMSSKQL-LKRMAS 235 (428)
T ss_pred CCCCCccCCcHHHHHHhC-CCCCCcEEEEEeCCCCCchHHHHHHHHHHHhc------CCCEEEEEeeCCHHHH-HHHHHH
Confidence 346789999999999875 69999999999999999999999999999842 4789999999964331 112211
Q ss_pred c--cCc--hh------hcccch------HHHhhc-CeEEeCCCCHHHHHHHHHHHHHHhhhcC--eeEEEEeccccccCC
Q 035774 159 S--SFP--EI------FHSKGM------AQEMAG-RILVLQPTSLSEFTESLEKIKVSLLQNQ--VKLLVIDSMEALVPG 219 (357)
Q Consensus 159 ~--~~~--~~------~~~~~~------~~~~~~-~i~~~~~~~~~~~~~~l~~l~~~~~~~~--~~lvvIDsl~~l~~~ 219 (357)
. .++ .. +....+ ...+.+ ++++.+.. ...+.++...+++...+++ ..+||||||+.+...
T Consensus 236 ~~~~i~~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~-~~t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~ 314 (428)
T PRK06749 236 CVGEVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNA-GVTVQDIWMQTRKLKRKHGDKKILIIVDYLQLITGD 314 (428)
T ss_pred hccCCCHHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCC-CCCHHHHHHHHHHHHHhcCCCCcEEEEeChhhcCCC
Confidence 1 011 00 000111 111112 35555433 2344445555555555555 559999999987532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhc
Q 035774 220 VHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAV 299 (357)
Q Consensus 220 ~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~ 299 (357)
. ....+|..++.++++.||.+|++++|+||+++|+++.... ..++.|..++++.|+. +++.+
T Consensus 315 ~-~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~---------------r~~krP~lsDLR~SG~--IEqdA 376 (428)
T PRK06749 315 P-KHKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVES---------------RQDKRPLLSDLRETGQ--IEQDA 376 (428)
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccc---------------cCCCCCchHhhhhccc--ccccC
Confidence 1 1123477889999999999999999999999999987541 2234555667776655 88999
Q ss_pred cEEEEEEEeC---------CeEEEEEEeCCCCCCceeEEEEcCC
Q 035774 300 TIRLVLEAKS---------GQRFMNVEKSPTSPPLAFSFTINPS 334 (357)
Q Consensus 300 ~~rl~l~~~~---------~~R~l~v~K~r~~~~~~~~f~I~~~ 334 (357)
|++++++++. +...+.|.|+|.++.+.+.+.+...
T Consensus 377 D~vl~l~R~~~y~~~~~~~~~~eliiaKnR~G~~G~v~~~f~~~ 420 (428)
T PRK06749 377 DVIMLMYREDYYDKETMQKEMTEIHVAKHRNGPVGSFKLRFLKE 420 (428)
T ss_pred CEEEEEeecccccccccCCCceEEEEecCCCCCCceEEEEEecC
Confidence 9999999863 2467899999999988877766544
No 43
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=99.96 E-value=8.4e-28 Score=230.83 Aligned_cols=232 Identities=17% Similarity=0.182 Sum_probs=159.8
Q ss_pred CCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCch--HHHHHHH
Q 035774 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS--RRMIEMG 157 (357)
Q Consensus 80 ~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~--~rl~~~~ 157 (357)
...+++||++.||.+++ |+++|++++|+|+||+|||+|+++++.+++.. . +.+|+||++|++... .|+....
T Consensus 174 ~~~gi~tG~~~LD~~~~-G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--~---g~~vl~~SlEm~~~~i~~R~~~~~ 247 (434)
T TIGR00665 174 GITGVPTGFTDLDKLTS-GLQPSDLIILAARPSMGKTAFALNIAENAAIK--E---GKPVAFFSLEMSAEQLAMRMLSSE 247 (434)
T ss_pred CCCcccCCchhhHhhcC-CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHh--C---CCeEEEEeCcCCHHHHHHHHHHHh
Confidence 46789999999999995 79999999999999999999999999998752 1 478999999996433 2222111
Q ss_pred hccCc-hh-----hcccch------HHHhhc-CeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCC
Q 035774 158 ASSFP-EI-----FHSKGM------AQEMAG-RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR 224 (357)
Q Consensus 158 ~~~~~-~~-----~~~~~~------~~~~~~-~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~ 224 (357)
.. .+ .. +....+ .....+ ++++.+ ....++.++...++....++++++||||||+.+..... .
T Consensus 248 ~~-v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d-~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~--~ 323 (434)
T TIGR00665 248 SR-VDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDD-TPGLTITELRAKARRLKREHGLGLIVIDYLQLMSGSGR--S 323 (434)
T ss_pred cC-CCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC--C
Confidence 11 10 00 000000 111222 344433 32234556666666676778899999999998853321 2
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEE
Q 035774 225 APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLV 304 (357)
Q Consensus 225 ~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~ 304 (357)
..|..++..+++.||.+|++++|+|++++|+++..... .+..+..++++.+.. +++.+|+++.
T Consensus 324 ~~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r---------------~~~~p~lsdlr~Sg~--ieq~aD~vi~ 386 (434)
T TIGR00665 324 ENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQR---------------EDKRPQLSDLRESGS--IEQDADIVMF 386 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhcc---------------CCCCCChHHHhhccc--hhhcCCEEEE
Confidence 34667899999999999999999999999998864411 112233345554433 7888999999
Q ss_pred EEEeC---------CeEEEEEEeCCCCCCceeEEEEcCCCcee
Q 035774 305 LEAKS---------GQRFMNVEKSPTSPPLAFSFTINPSGISL 338 (357)
Q Consensus 305 l~~~~---------~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~ 338 (357)
|+++. +.-.+.|.|+|.++.+.+.|.....--.+
T Consensus 387 l~r~~~~~~~~~~~~~~~l~v~KnR~G~~g~~~l~~~~~~~~f 429 (434)
T TIGR00665 387 LYRDEYYNPDSEDKGIAEIIIAKQRNGPTGTVKLAFQGEYTRF 429 (434)
T ss_pred eccccccCCCcCCCCceEEEEecCCCCCCCeEEEEEecCCCcc
Confidence 98753 34689999999999887777766544333
No 44
>PRK08506 replicative DNA helicase; Provisional
Probab=99.96 E-value=2e-27 Score=228.32 Aligned_cols=230 Identities=17% Similarity=0.190 Sum_probs=158.7
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHh--
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA-- 158 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~-- 158 (357)
..+++||++.||.++ ||+++|++++|+|+||+|||+|+++++.+++.. +.+|+||+.|++.... +.++..
T Consensus 172 ~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~------g~~V~~fSlEMs~~ql-~~Rlla~~ 243 (472)
T PRK08506 172 IIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ------DKGVAFFSLEMPAEQL-MLRMLSAK 243 (472)
T ss_pred CCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc------CCcEEEEeCcCCHHHH-HHHHHHHh
Confidence 568999999999998 579999999999999999999999999998742 4789999999954321 112211
Q ss_pred ccCc--h----------hhcccchHHHhh-cCeEEeCCCCHHHHHHHHHHHHHHhhhc-CeeEEEEeccccccCCCCCCC
Q 035774 159 SSFP--E----------IFHSKGMAQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQR 224 (357)
Q Consensus 159 ~~~~--~----------~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvvIDsl~~l~~~~~~~~ 224 (357)
..++ . +.........+. .++++.+. ....+.++...+++...++ ++++||||||+.+.... ..
T Consensus 244 s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~-~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~--~~ 320 (472)
T PRK08506 244 TSIPLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDS-GYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSG--NF 320 (472)
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECC-CCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCC--CC
Confidence 1110 0 000001111222 24555443 2234555555555554443 69999999999875432 12
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEE
Q 035774 225 APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLV 304 (357)
Q Consensus 225 ~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~ 304 (357)
..|..++.++++.||.||++++|+||+++|+++.... ..+..|..++++.++. +++.+|++++
T Consensus 321 ~~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~---------------r~~krP~lsDLreSg~--IeqdAD~vl~ 383 (472)
T PRK08506 321 KDRHLQISEISRGLKLLARELDIPIIALSQLNRSLES---------------RADKRPMLSDLRESGA--IEQDADIILF 383 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhh---------------ccCCCCChHHhhcchh--hhhcCCEEEE
Confidence 3477889999999999999999999999999986541 1223444566765555 8999999999
Q ss_pred EEEeCC-------------------------------eEEEEEEeCCCCCCceeEEEEcCCCcee
Q 035774 305 LEAKSG-------------------------------QRFMNVEKSPTSPPLAFSFTINPSGISL 338 (357)
Q Consensus 305 l~~~~~-------------------------------~R~l~v~K~r~~~~~~~~f~I~~~Gi~~ 338 (357)
++++.. .-.+.|.|+|.++.+.+.+.+..+--.+
T Consensus 384 l~R~~~y~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~eliiaKnR~G~~G~v~l~f~~~~~~f 448 (472)
T PRK08506 384 VYRDDVYKEREEKEKEKKAKKEGKEERRIHFQNKSIEEAEIIIGKNRNGPTGTVKLRFQKEFTRF 448 (472)
T ss_pred EecccccccccccccccccccccccccccccccccccceEEEEecCCCCCCceEEEEEecCCccc
Confidence 987520 1358899999999887776665544333
No 45
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.95 E-value=1.8e-26 Score=203.21 Aligned_cols=208 Identities=24% Similarity=0.311 Sum_probs=142.5
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc-cC
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS-SF 161 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~-~~ 161 (357)
+++||+++||++|+||+++|++++|.|+||+|||+|+++++.+.+.+ +.+|+||++|++.. .+.+.+.. .+
T Consensus 1 ri~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~------g~~~~~is~e~~~~--~i~~~~~~~g~ 72 (229)
T TIGR03881 1 RLSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD------GDPVIYVTTEESRE--SIIRQAAQFGM 72 (229)
T ss_pred CcCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc------CCeEEEEEccCCHH--HHHHHHHHhCC
Confidence 47999999999999999999999999999999999999999887742 47999999988643 33222211 11
Q ss_pred chhhcccchHHHhhcCeEEeCCCC----------HHHHHHHHHHHHHHhhhc--CeeEEEEeccccccCCCCCCCCCChH
Q 035774 162 PEIFHSKGMAQEMAGRILVLQPTS----------LSEFTESLEKIKVSLLQN--QVKLLVIDSMEALVPGVHEQRAPGQH 229 (357)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~l~~l~~~~~~~--~~~lvvIDsl~~l~~~~~~~~~~r~~ 229 (357)
. ++ ... ...++.+++... ..++.++...++..+... +.+++||||++.++... ..
T Consensus 73 ~--~~--~~~--~~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~-------~~ 139 (229)
T TIGR03881 73 D--FE--KAI--EEGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDK-------PA 139 (229)
T ss_pred C--HH--HHh--hcCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccC-------hH
Confidence 0 00 000 012333332110 123444555555555543 57899999999986531 12
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-
Q 035774 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK- 308 (357)
Q Consensus 230 ~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~- 308 (357)
..++++..|+++++++|+|+++++|....... . +... .++.+|.++.|+..
T Consensus 140 ~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~------------------~--~~~~--------~~~l~D~vI~L~~~~ 191 (229)
T TIGR03881 140 MARKYSYYLKRVLNRWNFTILLTSQYAITTSQ------------------A--FGFG--------IEHVADGIIRFRKVV 191 (229)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecccccCCC------------------C--cccc--------eEEEEeEEEEEEEec
Confidence 34567788999999999999999996432110 0 0001 35678888888754
Q ss_pred ---CCeEEEEEEeCCCCC--CceeEEEEcC-CCceec
Q 035774 309 ---SGQRFMNVEKSPTSP--PLAFSFTINP-SGISLL 339 (357)
Q Consensus 309 ---~~~R~l~v~K~r~~~--~~~~~f~I~~-~Gi~~~ 339 (357)
...|+++|.|+|+++ ...++|+|++ .||+++
T Consensus 192 ~~~~~~R~i~i~K~R~~~~~~~~~~~~I~~~~Gi~v~ 228 (229)
T TIGR03881 192 VDGELRRYLIVEKMRQTNHDKRAWEIDIVPGKGLVLK 228 (229)
T ss_pred cCCcEEEEEEEEeccCCCCCCceeEEEEcCCCceEEe
Confidence 237999999999987 4778999995 799985
No 46
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.95 E-value=2.4e-26 Score=205.92 Aligned_cols=230 Identities=20% Similarity=0.292 Sum_probs=150.5
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCch--HHHHHHHhcc
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS--RRMIEMGASS 160 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~--~rl~~~~~~~ 160 (357)
+|+||++.||++++ |+.+|++++|+|+||+|||+|++++|.+++.. .+.+|+||+.|++... .|+.......
T Consensus 1 Gi~TG~~~LD~~lg-G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~-----~~~~vly~SlEm~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 1 GIPTGFPALDRLLG-GLRPGELTVIAARPGVGKTAFALQIALNAALN-----GGYPVLYFSLEMSEEELAARLLARLSGV 74 (259)
T ss_dssp SB-SSTHHHHHHHS-SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHT-----TSSEEEEEESSS-HHHHHHHHHHHHHTS
T ss_pred CCCCChHHHHHHhc-CCCcCcEEEEEecccCCchHHHHHHHHHHHHh-----cCCeEEEEcCCCCHHHHHHHHHHHhhcc
Confidence 58999999999996 69999999999999999999999999999863 1389999999996433 2221111110
Q ss_pred ---------Cc-hhh-cccchHHHhhc-CeEEeCCCCHHHHHHHHHHHHHHhhh-cCeeEEEEeccccccCCCCCCCCCC
Q 035774 161 ---------FP-EIF-HSKGMAQEMAG-RILVLQPTSLSEFTESLEKIKVSLLQ-NQVKLLVIDSMEALVPGVHEQRAPG 227 (357)
Q Consensus 161 ---------~~-~~~-~~~~~~~~~~~-~i~~~~~~~~~~~~~~l~~l~~~~~~-~~~~lvvIDsl~~l~~~~~~~~~~r 227 (357)
+. ..+ ........+.+ .+++.+.. ...+.++...++..... .++++|||||++.+.... ....+
T Consensus 75 ~~~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~-~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~--~~~~~ 151 (259)
T PF03796_consen 75 PYNKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTP-SLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSED--SSDNR 151 (259)
T ss_dssp THHHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESS-S-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSC--SSSCC
T ss_pred hhhhhhccccCHHHHHHHHHHHHHHhhCcEEEECCC-CCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCC--CCCCH
Confidence 00 000 00001111222 24443332 22444444445555445 789999999999887653 33447
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEE
Q 035774 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA 307 (357)
Q Consensus 228 ~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~ 307 (357)
...+..+++.||.+|++++|+||+++|+++..... .+..+..++++.+.+ .++.+|+++.+.+
T Consensus 152 ~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~---------------~~~~p~l~dl~~sg~--Ie~~AD~vl~l~r 214 (259)
T PF03796_consen 152 RQEIGEISRELKALAKELNIPVIALSQLNREAEDR---------------EDKRPSLSDLRESGA--IEQDADVVLFLHR 214 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGS---------------SSCS--HHHHCSTSS--HHHH-SEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEccccChhhhcc---------------cccccchhhhhhhHH--HHHHHhhhhhhcc
Confidence 78899999999999999999999999998864411 112223344544444 7788999999998
Q ss_pred eC---------CeEEEEEEeCCCCCCceeEEEEcCCCcee
Q 035774 308 KS---------GQRFMNVEKSPTSPPLAFSFTINPSGISL 338 (357)
Q Consensus 308 ~~---------~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~ 338 (357)
+. ..-.+.|.|+|.++.+.+.+.+..+--.+
T Consensus 215 ~~~~~~~~~~~~~~~l~v~KnR~G~~g~v~~~f~~~~~~f 254 (259)
T PF03796_consen 215 DEKYDEDRDDKGEAELIVAKNRNGPTGTVPLRFNPETSRF 254 (259)
T ss_dssp HCHCHCCSSCTTEEEEEEEEESSS--EEEEEEEETTTTEE
T ss_pred chhhccccCCCCeEEEEEEecCCCCCceEEEEEECCCCeE
Confidence 53 25679999999999888877777654443
No 47
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.95 E-value=4.5e-26 Score=199.86 Aligned_cols=211 Identities=17% Similarity=0.232 Sum_probs=142.4
Q ss_pred CchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhc
Q 035774 87 RLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFH 166 (357)
Q Consensus 87 G~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~ 166 (357)
|+++||++|+||+++|++++|.|+||+|||+||++++.+.+.. +++|+||++|++ ...+.+.+... . ++
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~------g~~~~y~s~e~~--~~~l~~~~~~~-~--~~ 69 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN------GEKAMYISLEER--EERILGYAKSK-G--WD 69 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC------CCeEEEEECCCC--HHHHHHHHHHc-C--CC
Confidence 7899999999999999999999999999999999999998752 589999999985 44444433221 0 11
Q ss_pred ccchHHHhhcCeEEeCCCCH---HHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHH-HHHHHHHHHH
Q 035774 167 SKGMAQEMAGRILVLQPTSL---SEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLS-WHISLITSLA 242 (357)
Q Consensus 167 ~~~~~~~~~~~i~~~~~~~~---~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~-~i~~~Lk~la 242 (357)
.. +....++++.+..+. ..+..+...+...+.+.+++++||||++.+.... .. ....+ .+...++. .
T Consensus 70 ~~---~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~-~~----~~~~r~~l~~l~~~-l 140 (224)
T TIGR03880 70 LE---DYIDKSLYIVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLETLF-DD----DAERRTELFRFYSS-L 140 (224)
T ss_pred hH---HHHhCCeEEEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhhhc-CC----HHHHHHHHHHHHHH-H
Confidence 11 111224555543321 1244555566777777899999999999884321 11 12222 23333333 3
Q ss_pred HHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC------CeEEEEE
Q 035774 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS------GQRFMNV 316 (357)
Q Consensus 243 ~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~------~~R~l~v 316 (357)
+++|+++++++|........ .. .. ..++++|..+.|+... ..|.++|
T Consensus 141 k~~~~tvll~s~~~~~~~~~----------------~~----~~-------~~~~l~D~vI~L~~~~~~~~~~~~r~l~v 193 (224)
T TIGR03880 141 RETGVTTILTSEADKTNVFA----------------SK----YG-------LIEYLADGVIILKYVRNSDLRDVRLAVEV 193 (224)
T ss_pred HhCCCEEEEEEcccCCCCCc----------------cC----CC-------ceEEEEeEEEEEeeeecccCcceEEEEEE
Confidence 56899999999875421100 00 00 0256778888887432 2567999
Q ss_pred EeCCCCC--CceeEEEEcCCCceeccCCCc
Q 035774 317 EKSPTSP--PLAFSFTINPSGISLLTDDGT 344 (357)
Q Consensus 317 ~K~r~~~--~~~~~f~I~~~Gi~~~~~~~~ 344 (357)
.|+|+++ +.+++|+|+++||++++..++
T Consensus 194 ~K~Rg~~~~~~~~~~~i~~~Gi~v~~~~~~ 223 (224)
T TIGR03880 194 VKMRRSKHSREIKPYEITDSGITVYSEAEI 223 (224)
T ss_pred EEccCCCCCCceEEEEEcCCcEEEeccCCc
Confidence 9999987 578999999999999997765
No 48
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=99.95 E-value=2e-28 Score=219.40 Aligned_cols=293 Identities=28% Similarity=0.403 Sum_probs=216.9
Q ss_pred ccccCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcccCCCCCC
Q 035774 6 ISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLP 85 (357)
Q Consensus 6 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (357)
.+..+++......|...++.+++++...+..++..+.+.+.....++...+....+ +++.+ .....++
T Consensus 27 ~~~~~ita~~v~~l~~~~l~~v~~l~~~~~~el~~i~~~s~~~~~k~~~~l~~~~~--------~~~~~----~~~~~l~ 94 (326)
T KOG1433|consen 27 LLAGGITAEDVLLLSEGELSTVEGLAYAGKEELLLIIGLSEAKSGKTVLGLHKLVP--------MLQLR----SELGFLS 94 (326)
T ss_pred hhcccccHhhhhhhcccceEEEeccccCcchhheeeeeecccccccHHHHHHHhhH--------HHHhh----ccceeec
Confidence 34455666667777777777777777777777777777766665555544433211 12222 2256899
Q ss_pred CCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhh
Q 035774 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165 (357)
Q Consensus 86 TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~ 165 (357)
||..+||++|+||++.|.+++|+||||+|||+||+.++..+ ||.+..++|||++..|..+++..+......+.+
T Consensus 95 Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~------~gge~~~l~IDs~s~~~~~~~~~ia~~~~~~~~ 168 (326)
T KOG1433|consen 95 TGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTC------GGGEGKVLYIDTESTFRLERLTEIAGRSGLRGR 168 (326)
T ss_pred cchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhc------cCCcceEEEEecchhcccchhhhhhhhhhhhhH
Confidence 99999999999999999999999999999999998888766 355799999999998888888887766433322
Q ss_pred cccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCC---CChHHHHHHHHHHHHHH
Q 035774 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA---PGQHPLSWHISLITSLA 242 (357)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~---~r~~~~~~i~~~Lk~la 242 (357)
. ..+++.+....+..+.......+...+.+....++++||.++.+.....+.. .+...+...++.|++++
T Consensus 169 ~-------~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g~~~~~a~~~~~~~~~~~l~~la 241 (326)
T KOG1433|consen 169 D-------TLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYRTTFKGRGELSARQMLLAKFLRSLKKLA 241 (326)
T ss_pred H-------HHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEecccccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 2 2334443333334444444444455555668899999999999988665521 13445677888999999
Q ss_pred HHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEE-eCCeEEEEEEeCCC
Q 035774 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA-KSGQRFMNVEKSPT 321 (357)
Q Consensus 243 ~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~-~~~~R~l~v~K~r~ 321 (357)
++++++||++||++.+..+. .+|. ....+|.+|..|+|.+++|+.+.+ .+..|..++.++|.
T Consensus 242 ~~~g~~vvitn~v~~~~d~~-~~f~----------------~~~~~~~~~~~~~H~~~tr~~~~~~~g~~~~~k~~~s~~ 304 (326)
T KOG1433|consen 242 DEFGVAVVITNQVTAQVDGA-IMFG----------------SDPKKPIGGNIWAHAVTTRLGLRKGKGERRICKIADSPC 304 (326)
T ss_pred HhcCceEEEecccccccccc-cccC----------------cccccccccchHHHHHHHHHHHHhccccchhhhhhcCCC
Confidence 99999999999999987743 2332 024678999999999999999988 66788999999999
Q ss_pred CCCceeEEEEcCCCceecc
Q 035774 322 SPPLAFSFTINPSGISLLT 340 (357)
Q Consensus 322 ~~~~~~~f~I~~~Gi~~~~ 340 (357)
.|..+..|.|.+.|+....
T Consensus 305 l~e~~~~~~i~~~g~~~~~ 323 (326)
T KOG1433|consen 305 LPEAEAVFAITEDGISDQR 323 (326)
T ss_pred CCcchhHHHHHhhhhhhhh
Confidence 9999999999999997654
No 49
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.94 E-value=1.1e-25 Score=217.75 Aligned_cols=226 Identities=19% Similarity=0.159 Sum_probs=157.6
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
..+++||+++||++|+||+++|++++|.|+||+|||+|++|++.+++.+ +++|+||++|++.. .+...+..
T Consensus 242 ~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~------ge~~~y~s~eEs~~--~i~~~~~~- 312 (484)
T TIGR02655 242 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN------KERAILFAYEESRA--QLLRNAYS- 312 (484)
T ss_pred ccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEEeeCCHH--HHHHHHHH-
Confidence 4579999999999999999999999999999999999999999999853 58999999999643 33332222
Q ss_pred CchhhcccchHHHhhcCeEEeCCC-CHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHH
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQPT-SLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLIT 239 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk 239 (357)
+. ++..++ ...+++.+.... ....+.+.+..+...+.+.++++|||||++.+... .. ..++++++..|.
T Consensus 313 lg--~~~~~~--~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~-~~-----~~~~r~~~~~l~ 382 (484)
T TIGR02655 313 WG--IDFEEM--EQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALARG-VS-----NNAFRQFVIGVT 382 (484)
T ss_pred cC--CChHHH--hhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHh-cC-----HHHHHHHHHHHH
Confidence 11 111111 111235444322 11234566777777788889999999999998754 21 244566777888
Q ss_pred HHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe---C-CeEEEE
Q 035774 240 SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK---S-GQRFMN 315 (357)
Q Consensus 240 ~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~---~-~~R~l~ 315 (357)
+++++.+++++++++.....+. ... +. ...++.+|..+.|... + -+|.+.
T Consensus 383 ~~lk~~~it~~~t~~~~~~~~~-----------------~~~-------~~--~~~s~l~D~ii~l~~~e~~g~~~r~i~ 436 (484)
T TIGR02655 383 GYAKQEEITGFFTNTSDQFMGS-----------------HSI-------TD--SHISTITDTILMLQYVEIRGEMSRAIN 436 (484)
T ss_pred HHHhhCCCeEEEeecccccccC-----------------Ccc-------CC--CCeeEeeeEEEEEEEEecCCEEEEEEE
Confidence 9999999999999875432110 000 00 0024567777877643 2 368899
Q ss_pred EEeCCCCC--CceeEEEEcCCCceeccCC----Cceeccccc
Q 035774 316 VEKSPTSP--PLAFSFTINPSGISLLTDD----GTEMVVPET 351 (357)
Q Consensus 316 v~K~r~~~--~~~~~f~I~~~Gi~~~~~~----~~~~~~~~~ 351 (357)
|+|+|.++ ...++|+|+++||++.++. ++-...|..
T Consensus 437 V~K~R~~~~~~~~~~~~It~~Gi~v~~~~~~~~~~~~g~~~~ 478 (484)
T TIGR02655 437 VFKMRGSWHDKGIREFMISDKGPEIKDSFRNFERIISGSPTR 478 (484)
T ss_pred EEEccCCCCCCceEEEEEcCCcEEEcccccCCcceEcCCCcc
Confidence 99999988 4678999999999998664 344455543
No 50
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.94 E-value=1.3e-25 Score=217.23 Aligned_cols=216 Identities=19% Similarity=0.317 Sum_probs=146.6
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHH-hccC
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG-ASSF 161 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~-~~~~ 161 (357)
+++||+++||++|+||+|+|++++|.|+||+|||+||+||+.+.+.+ .+++++||++|++ +..+.+.+ .-.|
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-----~ge~~lyvs~eE~--~~~l~~~~~~~G~ 74 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-----FDEPGVFVTFEES--PQDIIKNARSFGW 74 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEecC--HHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999999999987752 1489999999974 34444333 2222
Q ss_pred chhhcccchHHHhhcCeEEeCCCC---------HHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHH
Q 035774 162 PEIFHSKGMAQEMAGRILVLQPTS---------LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLS 232 (357)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~ 232 (357)
. ..... ..+++.+.+... ..++...+..+...+...+.++|+|||++.+.... +.. ...-.
T Consensus 75 ~----~~~~~--~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~-~~~---~~~r~ 144 (484)
T TIGR02655 75 D----LQKLV--DEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQY-DAV---SVVRR 144 (484)
T ss_pred C----HHHHh--hcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhc-Cch---HHHHH
Confidence 1 11111 123444443321 12455677777788888899999999999875431 110 11112
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhH-hhhccEEEEEEEe--C
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHW-AHAVTIRLVLEAK--S 309 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w-~~~~~~rl~l~~~--~ 309 (357)
.+...+ +..++.++++++++|........ ..+ + + ++++|.++.|+.. +
T Consensus 145 ~l~~Li-~~L~~~g~TvLLtsh~~~~~~~~------------------~~~--------~--~~e~laDgVI~L~~~~~~ 195 (484)
T TIGR02655 145 EIFRLV-ARLKQIGVTTVMTTERIEEYGPI------------------ARY--------G--VEEFVSDNVVILRNVLEG 195 (484)
T ss_pred HHHHHH-HHHHHCCCEEEEEecCccccccc------------------ccC--------C--ceeEeeeeEEEEEEEecC
Confidence 233333 33356799999999875432100 000 0 2 4667888888643 2
Q ss_pred --CeEEEEEEeCCCCC--CceeEEEEcCCCceeccCCCc
Q 035774 310 --GQRFMNVEKSPTSP--PLAFSFTINPSGISLLTDDGT 344 (357)
Q Consensus 310 --~~R~l~v~K~r~~~--~~~~~f~I~~~Gi~~~~~~~~ 344 (357)
..|.++|.|+|+++ .+.++|+|+++||+++|....
T Consensus 196 ~~~~R~l~I~K~Rgs~~~~~~~~~~It~~Gi~v~p~~~~ 234 (484)
T TIGR02655 196 ERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAM 234 (484)
T ss_pred CEEEEEEEEEECCCCCcCCceEEEEEcCCcEEEEecccc
Confidence 26899999999988 477999999999999885443
No 51
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=99.94 E-value=1.3e-25 Score=202.27 Aligned_cols=214 Identities=27% Similarity=0.344 Sum_probs=153.8
Q ss_pred CCCCCCCchhHHhhhc-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 81 GGHLPTRLKGLDAALC-GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~-GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
...+|||++.||..|+ ||+|+|.+++|+|++++|||+|++++++++... +..|+|||.|..+++..+..+.-
T Consensus 31 ~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~------g~~~a~ID~e~~ld~~~a~~lGv- 103 (322)
T PF00154_consen 31 IEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ------GGICAFIDAEHALDPEYAESLGV- 103 (322)
T ss_dssp S-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT------T-EEEEEESSS---HHHHHHTT--
T ss_pred cceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc------cceeEEecCcccchhhHHHhcCc-
Confidence 5689999999999999 999999999999999999999999999988642 58999999999999887766542
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCC-CCCCCC------CChHHHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPG-VHEQRA------PGQHPLS 232 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~-~~~~~~------~r~~~~~ 232 (357)
.++++++++|.+.++..+++++ .++...+++|||||+.++.+. +.++.. .+...+.
T Consensus 104 --------------dl~rllv~~P~~~E~al~~~e~---lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms 166 (322)
T PF00154_consen 104 --------------DLDRLLVVQPDTGEQALWIAEQ---LIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMS 166 (322)
T ss_dssp ---------------GGGEEEEE-SSHHHHHHHHHH---HHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHH
T ss_pred --------------cccceEEecCCcHHHHHHHHHH---HhhcccccEEEEecCcccCCHHHHhhccccccCcchHHHHH
Confidence 2467888888887766555544 455677899999999999765 222211 1335677
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC---
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS--- 309 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~--- 309 (357)
.+++.|..++.+.||++|++||++.+.+ .+|. +| . ...+|..|.+...+|+.+.+.+
T Consensus 167 ~~lr~lt~~l~~~~~~~i~INQ~R~~ig---~~~g---~~-------------~-~t~GG~alkfyas~rl~i~k~~~ik 226 (322)
T PF00154_consen 167 QALRKLTPLLSKSNTTLIFINQVRDKIG---VMFG---NP-------------E-TTPGGRALKFYASVRLEIRKKEQIK 226 (322)
T ss_dssp HHHHHHHHHHHTTT-EEEEEEEESSSSS---SSSS---SS-------------S-CCTSHHHHHHHCSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhceEEEEeehHHHHHh---hccC---CC-------------c-CCCCCchhhhhhhhHHhhhcccccc
Confidence 8888888899999999999999998765 2222 11 1 2347888999999999998642
Q ss_pred -------CeEEEEEEeCCCCCC-ceeEEEEc-CCCcee
Q 035774 310 -------GQRFMNVEKSPTSPP-LAFSFTIN-PSGISL 338 (357)
Q Consensus 310 -------~~R~l~v~K~r~~~~-~~~~f~I~-~~Gi~~ 338 (357)
..-.++|+||+..++ ...+|.|. +.||..
T Consensus 227 ~~~~~iG~~~~vkv~KnKva~P~k~a~~~i~y~~Gid~ 264 (322)
T PF00154_consen 227 EGDEVIGNKIKVKVVKNKVAPPFKKAEFDIYYGRGIDR 264 (322)
T ss_dssp ETTCECEEEEEEEEEEESSS-TTEEEEEEEETTTEE-H
T ss_pred cCCcccccEEEEEEEEcccCCCcceeEEEEecCCeECc
Confidence 256799999999986 55788876 677743
No 52
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.94 E-value=1.7e-25 Score=202.11 Aligned_cols=236 Identities=16% Similarity=0.170 Sum_probs=156.5
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCch--HHHHHHHhc
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS--RRMIEMGAS 159 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~--~rl~~~~~~ 159 (357)
.+++||++.||.++ ||+++|++++|+|+||+|||+|+.+++.+++.. .+.+|+||++|++... .|+......
T Consensus 11 ~~~~tg~~~Ld~~~-gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-----~g~~vl~iS~E~~~~~~~~r~~~~~~~ 84 (271)
T cd01122 11 EEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLREYALDLITQ-----HGVRVGTISLEEPVVRTARRLLGQYAG 84 (271)
T ss_pred cCCCCCcceeeeee-EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-----cCceEEEEEcccCHHHHHHHHHHHHhC
Confidence 48999999999999 689999999999999999999999999998752 1489999999985322 222121111
Q ss_pred -cCch-----hhcc---cchHHHh--hcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCCh
Q 035774 160 -SFPE-----IFHS---KGMAQEM--AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQ 228 (357)
Q Consensus 160 -~~~~-----~~~~---~~~~~~~--~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~ 228 (357)
.+.. .... ....+.. ..++++++.....++..++..++..+..+++++|||||++.+..... ....+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~-~~~~~~ 163 (271)
T cd01122 85 KRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDER-ASGDER 163 (271)
T ss_pred CCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCC-CchhHH
Confidence 1100 0000 0011122 13566666554446667777777777778999999999999875421 112244
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe
Q 035774 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308 (357)
Q Consensus 229 ~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~ 308 (357)
..+..+++.|+.+|++++|+|++++|+++...... ...+..+..++++ ++..+.+.+|.++.|++.
T Consensus 164 ~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~------------~~~~~~~~~~d~~--gs~~i~~~aD~vi~l~r~ 229 (271)
T cd01122 164 KALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKT------------HEEGGEVSLSDFR--GSAAIGQLADNVIALERN 229 (271)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCc------------cccCCCceEEecc--CcHhHhhhccEEEEEEec
Confidence 56788999999999999999999999987543110 0001111112222 223477888999999864
Q ss_pred C-------CeEEEEEEeCCCC-CCce-eEEEEcCCCcee
Q 035774 309 S-------GQRFMNVEKSPTS-PPLA-FSFTINPSGISL 338 (357)
Q Consensus 309 ~-------~~R~l~v~K~r~~-~~~~-~~f~I~~~Gi~~ 338 (357)
. ..|.++|.|+|++ +.+. +.+.++.+--.+
T Consensus 230 ~~~e~~~~~~~~i~v~K~R~~~~~g~~~~~~~~~~t~~~ 268 (271)
T cd01122 230 QQAELDERNTTYLRILKNRFTGGTGVAGPLEYDKETGRL 268 (271)
T ss_pred CccccccCCcEEEEEEeeccCCCccceeeEEEECCCcee
Confidence 3 4688999999986 5443 456665443333
No 53
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.94 E-value=3.5e-25 Score=195.46 Aligned_cols=213 Identities=19% Similarity=0.209 Sum_probs=146.6
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
..+++||++.||++|+||+|+|++++|.|+||+|||+|+.+++...+.+ +++|+|+++|++.. ..+.++....
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~------g~~~~y~~~e~~~~-~~~~~~~~~g 76 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ------GKKVYVITTENTSK-SYLKQMESVK 76 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC------CCEEEEEEcCCCHH-HHHHHHHHCC
Confidence 4579999999999999999999999999999999999999999888742 58999999998643 3334443322
Q ss_pred CchhhcccchHHHhhcCeEEeCC------CCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHH
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQP------TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWH 234 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i 234 (357)
+. ..... ..+.+.+... ........++..+...+.+.+++++|||+++.+.... ....+..+
T Consensus 77 ~~----~~~~~--~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~------~~~~~~~~ 144 (234)
T PRK06067 77 ID----ISDFF--LWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA------EEDDILNF 144 (234)
T ss_pred CC----hhHHH--hCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC------CHHHHHHH
Confidence 21 11100 0122222211 1123445566677777777789999999999874321 22446667
Q ss_pred HHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC----C
Q 035774 235 ISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS----G 310 (357)
Q Consensus 235 ~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~----~ 310 (357)
+..|+.+++ .+++++++.|...... .. .....+.+|.++.|+... .
T Consensus 145 l~~l~~l~~-~g~tvllt~~~~~~~~-------------------------~~----~~~~~~l~DgvI~L~~~~~~~~~ 194 (234)
T PRK06067 145 LTEAKNLVD-LGKTILITLHPYAFSE-------------------------EL----LSRIRSICDVYLKLRAEQIGGRY 194 (234)
T ss_pred HHHHHHHHh-CCCEEEEEecCCcCCH-------------------------HH----HHHHHhheEEEEEEEeeccCCEE
Confidence 777776665 5889888887532111 00 011356677778787542 3
Q ss_pred eEEEEEEeCCCCC--C-ceeEEEEcC-CCceeccCC
Q 035774 311 QRFMNVEKSPTSP--P-LAFSFTINP-SGISLLTDD 342 (357)
Q Consensus 311 ~R~l~v~K~r~~~--~-~~~~f~I~~-~Gi~~~~~~ 342 (357)
.|+++|.|+|+++ . .+++|+|++ .||+++|..
T Consensus 195 ~r~l~i~K~Rg~~~~~~~~~~~~I~~~~Gi~v~~~~ 230 (234)
T PRK06067 195 VKVLEVVKLRGARKTTGNIISFDVDPAFGIKIIPLS 230 (234)
T ss_pred eEEEEEEhhcCCCCCCCCEEEEEEcCCCCeEEEEee
Confidence 6889999999987 3 678999997 599999753
No 54
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.94 E-value=3.8e-25 Score=216.24 Aligned_cols=219 Identities=23% Similarity=0.347 Sum_probs=153.0
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc-
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS- 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~- 159 (357)
..+++||+++||++|+||+|+|++++|+|+||+|||+|++||+.+.+.+ .+++|+||++|++ ...+.+.+..
T Consensus 10 ~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-----~ge~~lyis~ee~--~~~i~~~~~~~ 82 (509)
T PRK09302 10 IEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKR-----FDEPGVFVTFEES--PEDIIRNVASF 82 (509)
T ss_pred CccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----cCCCEEEEEccCC--HHHHHHHHHHc
Confidence 6799999999999999999999999999999999999999999988852 1489999999995 3344333222
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCC---------HHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTS---------LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP 230 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~ 230 (357)
.| +..... ..+.+.+.+... ..++..++..+...+...++++|||||++.++... + ....
T Consensus 83 g~----d~~~~~--~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~-d----~~~~ 151 (509)
T PRK09302 83 GW----DLQKLI--DEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGF-S----NEAV 151 (509)
T ss_pred CC----CHHHHh--hCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhc-c----CHHH
Confidence 21 111110 112344433221 12455667777888888899999999999875431 1 2234
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC-
Q 035774 231 LSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS- 309 (357)
Q Consensus 231 ~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~- 309 (357)
++..+..|.+.+++.+++++++.|........ .. . .+ -.+.+|..+.|+...
T Consensus 152 ~r~~l~~L~~~Lk~~g~TvLlt~~~~~~~~~~------------------~~-~-~~-------~~~laDgVI~L~~~~~ 204 (509)
T PRK09302 152 VRRELRRLFAWLKQKGVTAVITGERGDEYGPL------------------TR-Y-GV-------EEFVSDCVIILRNRLE 204 (509)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCccCcCCc------------------cc-c-Cc-------eEEEeeEEEEEeEEcc
Confidence 45566667777788999999998864421100 00 0 00 135678888887532
Q ss_pred ---CeEEEEEEeCCCCC--CceeEEEEcCCCceeccCCCc
Q 035774 310 ---GQRFMNVEKSPTSP--PLAFSFTINPSGISLLTDDGT 344 (357)
Q Consensus 310 ---~~R~l~v~K~r~~~--~~~~~f~I~~~Gi~~~~~~~~ 344 (357)
..|+++|.|+|+++ .+.++|+|++.||+++|....
T Consensus 205 ~~~~~R~l~I~K~Rg~~~~~~~~~f~I~~~Gi~v~p~~~~ 244 (509)
T PRK09302 205 GEKRTRTLRILKYRGTTHGKNEYPFTITEDGISVLPLTAM 244 (509)
T ss_pred CCeEEEEEEEEECCCCCcCCccEEEEECCCcEEEEecccc
Confidence 36999999999988 467999999999999987543
No 55
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.93 E-value=7.4e-25 Score=214.22 Aligned_cols=225 Identities=20% Similarity=0.206 Sum_probs=158.3
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
..+++||+++||++|+||+++|++++|.|+||+|||+|+++++.+.+.. +++|+||++|++ +..+.+.+..
T Consensus 252 ~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~------g~~~~yis~e~~--~~~i~~~~~~- 322 (509)
T PRK09302 252 NERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRR------GERCLLFAFEES--RAQLIRNARS- 322 (509)
T ss_pred cccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhC------CCcEEEEEecCC--HHHHHHHHHH-
Confidence 4579999999999999999999999999999999999999999988752 589999999985 3344333321
Q ss_pred CchhhcccchHHHhhcCeEEeCCC-CHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHH
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQPT-SLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLIT 239 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk 239 (357)
+. ++..... ..+.+.+.... ....+...+..+...+.++++++|||||++.+.... ....+++++..|.
T Consensus 323 ~g--~~~~~~~--~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~------~~~~~~~~l~~l~ 392 (509)
T PRK09302 323 WG--IDLEKME--EKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGG------SLNEFRQFVIRLT 392 (509)
T ss_pred cC--CChHHHh--hcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC------CHHHHHHHHHHHH
Confidence 11 1111110 11223232211 122344556667777777899999999999987532 1245677788899
Q ss_pred HHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC----CeEEEE
Q 035774 240 SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS----GQRFMN 315 (357)
Q Consensus 240 ~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~----~~R~l~ 315 (357)
++++++|+++++|+|.....+.. ... . ..+++++|.+|.|+... ..|+++
T Consensus 393 ~~~k~~~~t~l~t~~~~~~~g~~----------------~~~----~------~~~~~l~D~vI~L~~~~~~~~~~R~l~ 446 (509)
T PRK09302 393 DYLKSEEITGLFTNLTPDFMGSH----------------SIT----E------SHISSLTDTWILLQYVEINGEMNRALY 446 (509)
T ss_pred HHHHhCCCeEEEEeccccccCCC----------------CCC----c------CceEEeeeEEEEEEEeecCCeeEEEEE
Confidence 99999999999999875422100 000 0 01467788889998642 369999
Q ss_pred EEeCCCCC--CceeEEEEcCCCceeccC----CCceecccc
Q 035774 316 VEKSPTSP--PLAFSFTINPSGISLLTD----DGTEMVVPE 350 (357)
Q Consensus 316 v~K~r~~~--~~~~~f~I~~~Gi~~~~~----~~~~~~~~~ 350 (357)
|.|+|+++ ...++|+|+++||.+.++ .++....|.
T Consensus 447 I~K~Rg~~~~~~~~~f~It~~Gi~v~~~~~~~~~~~~g~~~ 487 (509)
T PRK09302 447 VLKMRGSWHSNQIREFVITDKGIHIKDPFRGFEGILSGSPR 487 (509)
T ss_pred EEEcCCCCCCCceEEEEEeCCcEEEcccccCCCccccCCCc
Confidence 99999887 578899999999999876 344444444
No 56
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.92 E-value=6.1e-24 Score=188.70 Aligned_cols=216 Identities=15% Similarity=0.168 Sum_probs=144.3
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHh--ccCchh-hc
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA--SSFPEI-FH 166 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~--~~~~~~-~~ 166 (357)
+||.+++ |+++|++++|+|+||+|||+|+++++.+++.+ .+.+|+||++|++.... +.++.. ..++.. ..
T Consensus 2 ~LD~~~~-Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-----~g~~vly~s~E~~~~~~-~~r~~~~~~~~~~~~~~ 74 (242)
T cd00984 2 DLDNLTG-GLQPGDLIIIAARPSMGKTAFALNIAENIAKK-----QGKPVLFFSLEMSKEQL-LQRLLASESGISLSKLR 74 (242)
T ss_pred chhhhhc-CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCceEEEeCCCCHHHH-HHHHHHHhcCCCHHHHh
Confidence 6999996 89999999999999999999999999999863 14899999999954321 222211 111100 00
Q ss_pred --------c---cchHHHh-hcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHH
Q 035774 167 --------S---KGMAQEM-AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWH 234 (357)
Q Consensus 167 --------~---~~~~~~~-~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i 234 (357)
. ....... ..++++.+.. ..++..+...+.....++++++|||||++.+.... ....+...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~--~~~~~~~~~~~~ 151 (242)
T cd00984 75 TGSLSDEDWERLAEAIGELKELPIYIDDSS-SLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK--KKGNRQQEVAEI 151 (242)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCEEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC--CCCCHHHHHHHH
Confidence 0 0001111 1244444332 23455566666666667799999999999886442 223455778899
Q ss_pred HHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC-----
Q 035774 235 ISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS----- 309 (357)
Q Consensus 235 ~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~----- 309 (357)
++.|+.+|+++||++++++|+++...... ...+...+++-+ ..+.+.+|.++.|.++.
T Consensus 152 ~~~L~~la~~~~~~ii~~~q~~r~~~~~~---------------~~~~~~~~~~gS--~~i~~~aD~vi~l~~~~~~~~~ 214 (242)
T cd00984 152 SRSLKLLAKELNVPVIALSQLSRGVESRA---------------DKRPMLSDLRES--GSIEQDADVVMFLYRDEYYNKE 214 (242)
T ss_pred HHHHHHHHHHhCCeEEEecccChhhhccC---------------CCCCCHHHHhhh--cccccCCCEEEEEecccccccc
Confidence 99999999999999999999987533110 001111222222 23677889999998763
Q ss_pred ----CeEEEEEEeCCCCCCceeEEEEc
Q 035774 310 ----GQRFMNVEKSPTSPPLAFSFTIN 332 (357)
Q Consensus 310 ----~~R~l~v~K~r~~~~~~~~f~I~ 332 (357)
+.-.+.|.|+|.++.+.+.+.+.
T Consensus 215 ~~~~~~~~l~v~KnR~G~~g~~~l~~~ 241 (242)
T cd00984 215 SESKGIAEIIVAKNRNGPTGTVELRFD 241 (242)
T ss_pred cCCCCceEEEEECCCCCCCeeEEEEee
Confidence 34689999999999887776554
No 57
>PRK07773 replicative DNA helicase; Validated
Probab=99.91 E-value=5.3e-24 Score=219.18 Aligned_cols=173 Identities=18% Similarity=0.228 Sum_probs=123.9
Q ss_pred ccCCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHH
Q 035774 78 EHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG 157 (357)
Q Consensus 78 ~~~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~ 157 (357)
.....+++||++.||.++ ||+++|++++|+|+||+|||+|++++|.+++.. .+.+|+||++||+.... +.++.
T Consensus 194 ~~~~~Gi~TG~~~LD~l~-~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~-----~~~~V~~fSlEms~~ql-~~R~~ 266 (886)
T PRK07773 194 GGLARGVPTGFTELDAMT-NGLHPGQLIIVAARPSMGKTTFGLDFARNCAIR-----HRLAVAIFSLEMSKEQL-VMRLL 266 (886)
T ss_pred CCCCCCccCChhHhcccc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHh-----cCCeEEEEecCCCHHHH-HHHHH
Confidence 334679999999999998 679999999999999999999999999999853 14789999999964431 12222
Q ss_pred h--ccCc-hhh-----cccc---h---HHHhh-cCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCC
Q 035774 158 A--SSFP-EIF-----HSKG---M---AQEMA-GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHE 222 (357)
Q Consensus 158 ~--~~~~-~~~-----~~~~---~---~~~~~-~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~ 222 (357)
. ..++ ... .... . ...+. .++++ +......+.++...+++...++++++||||||+.+... .
T Consensus 267 s~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i-~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~--~ 343 (886)
T PRK07773 267 SAEAKIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFI-DDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSG--K 343 (886)
T ss_pred HHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEE-ECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCC--C
Confidence 1 1110 000 0000 0 11111 23444 33333355666666677766788999999999988643 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCC
Q 035774 223 QRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260 (357)
Q Consensus 223 ~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~ 260 (357)
...+|.+++.++++.||.||++++|+||+++|+++...
T Consensus 344 ~~~~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e 381 (886)
T PRK07773 344 KYENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVE 381 (886)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCcEEEecccCcchh
Confidence 23457789999999999999999999999999998754
No 58
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.89 E-value=8.5e-22 Score=176.58 Aligned_cols=218 Identities=23% Similarity=0.378 Sum_probs=150.7
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHh-c
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA-S 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~-~ 159 (357)
..++|||++.||++|+||+|+|.+++|+|+||+|||+|++|++.+.+.. +.+|+||+++++ +..+.+.+. .
T Consensus 2 ~~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~------ge~vlyvs~~e~--~~~l~~~~~~~ 73 (260)
T COG0467 2 MERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE------GEPVLYVSTEES--PEELLENARSF 73 (260)
T ss_pred CccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc------CCcEEEEEecCC--HHHHHHHHHHc
Confidence 4579999999999999999999999999999999999999999999852 599999999884 444443332 2
Q ss_pred cCchhhcccchHHHhhcCeEEeC------------CCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCC
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQ------------PTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG 227 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~------------~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r 227 (357)
.|. ++ ...+. ..+.+.+ ..+..++..+...+...+...+...+||||++.+..... .
T Consensus 74 g~d--~~--~~~~~--g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~-----~ 142 (260)
T COG0467 74 GWD--LE--VYIEK--GKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLN-----D 142 (260)
T ss_pred CCC--HH--HHhhc--CCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhcC-----c
Confidence 221 11 00000 1111111 111234555666777777777899999999997554321 1
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEE
Q 035774 228 QHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA 307 (357)
Q Consensus 228 ~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~ 307 (357)
....+.++..++++.++++++.+++.+........ ..+ -...++..+.|..
T Consensus 143 ~~~~r~~~~~l~~~~~~~~~t~~~~~~~~~~~~~~----------------------~~~-------~~~~vdgvI~l~~ 193 (260)
T COG0467 143 PALVRRILLLLKRFLKKLGVTSLLTTEAPVEERGE----------------------SGV-------EEYIVDGVIRLDL 193 (260)
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCc----------------------cce-------EEEEEEEEEEEee
Confidence 23336788899999999999999998764432210 001 0125566676665
Q ss_pred e----CCeE-EEEEEeCCCCC--CceeEEEEcC-CCceeccCCCcee
Q 035774 308 K----SGQR-FMNVEKSPTSP--PLAFSFTINP-SGISLLTDDGTEM 346 (357)
Q Consensus 308 ~----~~~R-~l~v~K~r~~~--~~~~~f~I~~-~Gi~~~~~~~~~~ 346 (357)
. ...| +++|.|+|..+ ...+.|+|++ +||.+++......
T Consensus 194 ~~~~~~~~r~~~~i~k~r~~~~~~~~~~~~i~~g~gi~i~~~~~~~~ 240 (260)
T COG0467 194 KEIEGGGDRRYLRILKMRGTPHSLKVIPFEITDGEGIVVYPEGRIRL 240 (260)
T ss_pred ecccCceEEEEEEEEeccccccCCceeceEEecCCcEEEecCccccc
Confidence 3 2345 99999999987 3678999999 7999999866544
No 59
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.88 E-value=4.9e-21 Score=167.75 Aligned_cols=210 Identities=17% Similarity=0.246 Sum_probs=138.9
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCc
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFP 162 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 162 (357)
.+.++++.||++++||+++|++++|.|+||+|||+||++++...+.+ +.+++|+++|++. ...++++....+
T Consensus 5 ~~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~------g~~~~yi~~e~~~-~~~~~~~~~~g~- 76 (230)
T PRK08533 5 KIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN------GYSVSYVSTQLTT-TEFIKQMMSLGY- 76 (230)
T ss_pred EEEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC------CCcEEEEeCCCCH-HHHHHHHHHhCC-
Confidence 57899999999999999999999999999999999999999987642 4899999998854 334444432221
Q ss_pred hhhcccchHHHhhcCeEEeCC----CCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHH
Q 035774 163 EIFHSKGMAQEMAGRILVLQP----TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLI 238 (357)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~L 238 (357)
..+.. ...+++.+.+. ....+....+..+.......+++++|||+++.+.....+ .....++.+.|
T Consensus 77 ---~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d-----~~~~~~l~~~l 146 (230)
T PRK08533 77 ---DINKK--LISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDAS-----EVAVNDLMAFF 146 (230)
T ss_pred ---chHHH--hhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcc-----hHHHHHHHHHH
Confidence 11111 11123333221 122233444555555555568999999999987643111 12345567777
Q ss_pred HHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC----CeEEE
Q 035774 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS----GQRFM 314 (357)
Q Consensus 239 k~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~----~~R~l 314 (357)
+.++++ +++++++++....... . ... ..+++|..+.|+... ..|++
T Consensus 147 ~~l~~~-g~tvi~t~~~~~~~~~-----------------~----~~~--------~~~~~DgvI~L~~~~~~~~~~R~i 196 (230)
T PRK08533 147 KRISSL-NKVIILTANPKELDES-----------------V----LTI--------LRTAATMLIRLEVKVFGGDLKNSA 196 (230)
T ss_pred HHHHhC-CCEEEEEecccccccc-----------------c----cee--------EEEeeeEEEEEEEeecCCEEEEEE
Confidence 777654 7788887764321110 0 000 256678888887542 26899
Q ss_pred EEEeCCCCCC---ceeEEEEcCC-Cceecc
Q 035774 315 NVEKSPTSPP---LAFSFTINPS-GISLLT 340 (357)
Q Consensus 315 ~v~K~r~~~~---~~~~f~I~~~-Gi~~~~ 340 (357)
.|.|+|+.++ ..++|+|.++ ||.+..
T Consensus 197 ~V~KmR~~~~~~~~~~~f~i~~~~g~~~~~ 226 (230)
T PRK08533 197 KIVKYNMAKGSFQKSIPFRVEPKIGLAVEI 226 (230)
T ss_pred EEEEecCCccccCCEEEEEEcCCccEEEEE
Confidence 9999999774 3789999965 998753
No 60
>PRK05973 replicative DNA helicase; Provisional
Probab=99.85 E-value=1.6e-20 Score=163.19 Aligned_cols=143 Identities=17% Similarity=0.178 Sum_probs=98.6
Q ss_pred HHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHH-HHHhccCchhhcccc
Q 035774 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMI-EMGASSFPEIFHSKG 169 (357)
Q Consensus 91 LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~-~~~~~~~~~~~~~~~ 169 (357)
.|++. ||+++|++++|+|+||+|||+|+++++.+++.. +++|+||++|++. ..+. ++....+. .
T Consensus 54 ~~~l~-GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~------Ge~vlyfSlEes~--~~i~~R~~s~g~d----~-- 118 (237)
T PRK05973 54 AEELF-SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS------GRTGVFFTLEYTE--QDVRDRLRALGAD----R-- 118 (237)
T ss_pred HHHhc-CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc------CCeEEEEEEeCCH--HHHHHHHHHcCCC----h--
Confidence 78855 679999999999999999999999999999852 5899999999963 2332 22222111 1
Q ss_pred hHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeE
Q 035774 170 MAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPI 249 (357)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~v 249 (357)
....+ .+.++..+......++.++ ...+++++||||||+.+.... +...+..+++.|+.+|+++|+||
T Consensus 119 --~~~~~-~~~~d~~d~~~~~~ii~~l---~~~~~~~lVVIDsLq~l~~~~------~~~el~~~~~~Lk~~Ak~~gitv 186 (237)
T PRK05973 119 --AQFAD-LFEFDTSDAICADYIIARL---ASAPRGTLVVIDYLQLLDQRR------EKPDLSVQVRALKSFARERGLII 186 (237)
T ss_pred --HHhcc-ceEeecCCCCCHHHHHHHH---HHhhCCCEEEEEcHHHHhhcc------cchhHHHHHHHHHHHHHhCCCeE
Confidence 11112 2223222222222333333 334678999999999885321 22346778889999999999999
Q ss_pred EEeccccccCC
Q 035774 250 VVTNQVRPQSH 260 (357)
Q Consensus 250 v~~~q~~~~~~ 260 (357)
|+++|++...+
T Consensus 187 Il~sQl~r~~e 197 (237)
T PRK05973 187 VFISQIDRSFD 197 (237)
T ss_pred EEEecCccccc
Confidence 99999988765
No 61
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.81 E-value=1.5e-19 Score=154.95 Aligned_cols=170 Identities=24% Similarity=0.373 Sum_probs=95.8
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCC----CCCeEEEEeCCCCCch--HHHHH
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGG----LDGGVIYIDVESTFTS--RRMIE 155 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg----~~~~vl~i~~e~~~~~--~rl~~ 155 (357)
..++++++.+|.++.|++++|++++|+|+||+|||+|+++++...+....+=| .+.+|+||++|++... .|+..
T Consensus 12 ~~~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~ 91 (193)
T PF13481_consen 12 EDLDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRA 91 (193)
T ss_dssp -HHHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHH
T ss_pred hhccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999986322211 3579999999997532 44444
Q ss_pred HHhccCchhhcccchHH--HhhcCeEEeCCCCH-HHHHHHHHHHHHHhhh-cCeeEEEEeccccccCCCCCCCCCChHHH
Q 035774 156 MGASSFPEIFHSKGMAQ--EMAGRILVLQPTSL-SEFTESLEKIKVSLLQ-NQVKLLVIDSMEALVPGVHEQRAPGQHPL 231 (357)
Q Consensus 156 ~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~~~~l~~l~~~~~~-~~~~lvvIDsl~~l~~~~~~~~~~r~~~~ 231 (357)
+... ... ........ .. ..+.++..... ......+..+.+.+.. +++++||||+++.+... ..+....+
T Consensus 92 ~~~~-~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~----~~~~~~~~ 164 (193)
T PF13481_consen 92 LLQD-YDD-DANLFFVDLSNW-GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG----DENSNSAV 164 (193)
T ss_dssp HHTT-S-H-HHHHHHHHH--E--EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-----TT-HHHH
T ss_pred Hhcc-cCC-ccceEEeecccc-ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC----CCCCHHHH
Confidence 4432 110 00000000 01 12222222211 1134456677777777 78999999999999876 12234555
Q ss_pred HHHHHHHHHHHHHcCCeEEEecccccc
Q 035774 232 SWHISLITSLAEFSRIPIVVTNQVRPQ 258 (357)
Q Consensus 232 ~~i~~~Lk~la~~~~~~vv~~~q~~~~ 258 (357)
.++++.|+++|+++|++|++++|.++.
T Consensus 165 ~~~~~~l~~la~~~~~~vi~v~H~~K~ 191 (193)
T PF13481_consen 165 AQLMQELKRLAKEYGVAVILVHHTNKS 191 (193)
T ss_dssp HHHHHHHHHHHHHH--EEEEEEEE---
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCCC
Confidence 889999999999999999999999774
No 62
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=6.1e-18 Score=140.61 Aligned_cols=210 Identities=18% Similarity=0.259 Sum_probs=151.5
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCc
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFP 162 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 162 (357)
-+++|-++||+-|+||+|-|++++|.|+.|+|||.|++++++-.+.+ +..+.|+++|.+. .+-+.+|..-.++
T Consensus 9 ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~------g~~v~yvsTe~T~-refi~qm~sl~yd 81 (235)
T COG2874 9 IIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMN------GYRVTYVSTELTV-REFIKQMESLSYD 81 (235)
T ss_pred hccCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhC------CceEEEEEechhH-HHHHHHHHhcCCC
Confidence 48999999999999999999999999999999999999999988753 6899999999863 3455666543321
Q ss_pred hhhcccchHHHhhcCeEEeCC------CCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHH
Q 035774 163 EIFHSKGMAQEMAGRILVLQP------TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHIS 236 (357)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~ 236 (357)
..+ .-..+++.++.. ++......+++.+....+..+.+++||||++.+...+ ....+.+++.
T Consensus 82 ----v~~--~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~------~~~~vl~fm~ 149 (235)
T COG2874 82 ----VSD--FLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD------SEDAVLNFMT 149 (235)
T ss_pred ----chH--HHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc------cHHHHHHHHH
Confidence 111 112344444331 2345556667777676667789999999999987652 2357788999
Q ss_pred HHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC----CeE
Q 035774 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS----GQR 312 (357)
Q Consensus 237 ~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~----~~R 312 (357)
.+++++.+ |-+|++|.|...-.+ +.+. -....+++-+.|+..+ ..+
T Consensus 150 ~~r~l~d~-gKvIilTvhp~~l~e------------------------~~~~-----rirs~~d~~l~L~~~~~Gg~~~~ 199 (235)
T COG2874 150 FLRKLSDL-GKVIILTVHPSALDE------------------------DVLT-----RIRSACDVYLRLRLEELGGDLIK 199 (235)
T ss_pred HHHHHHhC-CCEEEEEeChhhcCH------------------------HHHH-----HHHHhhheeEEEEhhhhCCeeeE
Confidence 99999986 667777766533111 0111 1567788888887642 367
Q ss_pred EEEEEeCCCCC---CceeEEEEcC-CCceeccC
Q 035774 313 FMNVEKSPTSP---PLAFSFTINP-SGISLLTD 341 (357)
Q Consensus 313 ~l~v~K~r~~~---~~~~~f~I~~-~Gi~~~~~ 341 (357)
.+.|+|-++.+ ...++|++.+ -|+.+.+.
T Consensus 200 ~~~i~K~~ga~~s~~~~I~F~V~P~~Glkvep~ 232 (235)
T COG2874 200 VLEIVKYRGARKSFQNIISFRVEPGFGLKVEPA 232 (235)
T ss_pred EEEEeeecCchhhcCCceeEEecCCCceEEEEe
Confidence 89999998877 3568999994 78888764
No 63
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.71 E-value=8.5e-16 Score=130.85 Aligned_cols=174 Identities=22% Similarity=0.225 Sum_probs=106.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc-cCchhhcccchHHHhhcCeEEeC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS-SFPEIFHSKGMAQEMAGRILVLQ 182 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~ 182 (357)
+++|.|+||+|||+|+++++...+.. +++|+|+++|++.. .+.+.+.. .+. ...+ ...+.+.+.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~------g~~v~~~s~e~~~~--~~~~~~~~~g~~----~~~l--~~~g~l~~~d 66 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR------GEPGLYVTLEESPE--ELIENAESLGWD----LERL--EDEGLLAIVD 66 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC------CCcEEEEECCCCHH--HHHHHHHHcCCC----hHHH--HhcCCeEEEe
Confidence 47899999999999999999998842 58999999998533 33322211 111 1100 0112233333
Q ss_pred CCC----HHHH---HHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 183 PTS----LSEF---TESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 183 ~~~----~~~~---~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
... ..+. .+++..+...+...+++++|||+++.+... + .......+.+.++.+. +.|+++|+++|.
T Consensus 67 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~--~----~~~~~~~i~~l~~~l~-~~g~tvi~v~~~ 139 (187)
T cd01124 67 ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLM--E----QSTARLEIRRLLFALK-RFGVTTLLTSEQ 139 (187)
T ss_pred cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhc--C----hHHHHHHHHHHHHHHH-HCCCEEEEEecc
Confidence 221 1111 134555666666678999999999998653 1 1122223344444444 459999999987
Q ss_pred cccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe--CC--eEEEEEEeCCCCCCc
Q 035774 256 RPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK--SG--QRFMNVEKSPTSPPL 325 (357)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~--~~--~R~l~v~K~r~~~~~ 325 (357)
...... +.....+.+.+|..+.++.. ++ .|+++|.|+|++++.
T Consensus 140 ~~~~~~---------------------------~~~~~~~~~~aD~ii~l~~~~~~~~~~r~l~i~K~R~~~~~ 186 (187)
T cd01124 140 SGLEGT---------------------------GFGGGDVEYLVDGVIRLRLDEEGGRLRRSLSVVKMRGGPHD 186 (187)
T ss_pred ccCCCc---------------------------ccCcCceeEeeeEEEEEEEEccCCEEEEEEEEEEccCCCCC
Confidence 553210 00011256778888888865 22 688999999998753
No 64
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=99.70 E-value=2.5e-16 Score=130.54 Aligned_cols=205 Identities=18% Similarity=0.183 Sum_probs=148.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchh-------------hc
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEI-------------FH 166 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~-------------~~ 166 (357)
..|++++|.||.++|||.+..|+++++.+|.++||.+..|+|||++..|+..|+.++.+.+..+. ..
T Consensus 36 daG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~~ 115 (293)
T KOG2859|consen 36 DAGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEEQ 115 (293)
T ss_pred ccCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHhH
Confidence 36899999999999999999999999999999999999999999999999999988776543211 12
Q ss_pred ccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhc-CeeEEEEeccccccCCCCCCC-CCC---hHHHHHHHHHHHHH
Q 035774 167 SKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQR-APG---QHPLSWHISLITSL 241 (357)
Q Consensus 167 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvvIDsl~~l~~~~~~~~-~~r---~~~~~~i~~~Lk~l 241 (357)
.++.....+.+++++.|++..++...+..++..+.++ ++.++++||+++++|.+.... +.+ ...++.+...|+++
T Consensus 116 ~eEi~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~~~p~~cll~~DslsaFyW~Dr~~~le~~n~~~~~lr~~~q~LeKL 195 (293)
T KOG2859|consen 116 LEEIAGECMSRFRFVNCFASDDLLTSLIDLRYAIINDPGICLLAMDSLSAFYWLDRPKILEKRNSMYRHLRLLQQRLEKL 195 (293)
T ss_pred HHHHHHHHHhhEEEEEeeccHHHHHHHHHHHHHHhcCCceeEEeecchhhheeecccchHhhhhhHHHHHHHHHHHHHHH
Confidence 2344556688999999999999988888888887765 489999999999999854332 112 23467788899999
Q ss_pred HHHcCCeEEEeccccccCCCCCCccccccc-ccccccccccCCCcceecccchhHhhhccEEEEEEEeCC
Q 035774 242 AEFSRIPIVVTNQVRPQSHDESCLYPFQVQ-KMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKSG 310 (357)
Q Consensus 242 a~~~~~~vv~~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~~ 310 (357)
.+.+-+.++.|.+.-.... |.++-+ |+-+...-- .......|.+-..|.+.+.+++.+++..+
T Consensus 196 ~~d~~lv~~aT~~ti~~e~-----y~~~En~P~~~gRsvC-llliky~~~~~k~~qq~v~h~l~~sks~d 259 (293)
T KOG2859|consen 196 CKDAILVGMATVETIFLEN-----YRFGENLPEAGGRSVC-LLLIKYHVRMQKIQQQIVLHGLPLSKSND 259 (293)
T ss_pred HhhheeeeeeehhHHHHhc-----ccccccCcccccccee-eeeccccHHHHHHHHHHHHccCceecccc
Confidence 9999888888887644322 111111 111100000 00011123445579999999999987654
No 65
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.66 E-value=1.1e-14 Score=129.00 Aligned_cols=210 Identities=21% Similarity=0.242 Sum_probs=124.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCC------CCCeEEEEeCCCCCc--hHHHHHHHhccCchhhcccchH-H
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGG------LDGGVIYIDVESTFT--SRRMIEMGASSFPEIFHSKGMA-Q 172 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg------~~~~vl~i~~e~~~~--~~rl~~~~~~~~~~~~~~~~~~-~ 172 (357)
|.+.+|+|+||+|||+|++++|..++....+.| .+++|+|+++|++.. ..|+..+....-.......... .
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 678999999999999999999999887555444 357899999999755 3566655543100000000000 0
Q ss_pred HhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEe
Q 035774 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVT 252 (357)
Q Consensus 173 ~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~ 252 (357)
.....+.+..... ......+..+...+...++++||||+++.+... ..........++..|++++++++++|+++
T Consensus 81 g~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~----~~~d~~~~~~~~~~L~~~a~~~g~avl~v 155 (239)
T cd01125 81 GRIQPISIAREGR-IIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGV----SENDNGAMDAVIKALRRIAAQTGAAILLV 155 (239)
T ss_pred cCCCceecccCCc-ccccHHHHHHHHHHHhcCCCEEEECChHHhCCC----CcCCHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 0011111111110 011222333333344568999999999987322 12234567778999999999999999999
Q ss_pred ccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC-------------CeEE--EEEE
Q 035774 253 NQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS-------------GQRF--MNVE 317 (357)
Q Consensus 253 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~-------------~~R~--l~v~ 317 (357)
+|..+....... ..-...+...|.+.++..+.+.+.. ..++ ..+.
T Consensus 156 ~H~~K~~~~~~~--------------------~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (239)
T cd01125 156 HHVRKGSAKDGD--------------------TQEAARGASALVDGARWVRALTRMTSEEAEKMGVGKAQPGLFFRFGVS 215 (239)
T ss_pred eccCcccccCcc--------------------cccccCcHHHHhcccceEEEEeeCCHHHHHhcCCChhhcceEEEeccc
Confidence 999875432110 0001112345777788888887531 1223 3467
Q ss_pred eCCCC-CC-ceeEEEEcCCCc
Q 035774 318 KSPTS-PP-LAFSFTINPSGI 336 (357)
Q Consensus 318 K~r~~-~~-~~~~f~I~~~Gi 336 (357)
|+.+. ++ ...-|+-.++|+
T Consensus 216 k~n~~~~~~~~~w~~~~~~~~ 236 (239)
T cd01125 216 KKNNAAATEADRWYRRNSGGV 236 (239)
T ss_pred ccccCCCCCCCeEEEEccCcc
Confidence 77776 54 334566566554
No 66
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=99.51 E-value=5.5e-14 Score=124.50 Aligned_cols=222 Identities=16% Similarity=0.200 Sum_probs=143.7
Q ss_pred CchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHH-HHhc----cC
Q 035774 87 RLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIE-MGAS----SF 161 (357)
Q Consensus 87 G~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~-~~~~----~~ 161 (357)
-++.|+++|.| .++|+++++.||.|+|||||+...+...+.+ +...+|=|+|. +..|+.. |+.. ..
T Consensus 259 RFpvLNk~LkG-hR~GElTvlTGpTGsGKTTFlsEYsLDL~~Q------GVnTLwgSFEi--~n~rla~~mL~Qyagyrl 329 (514)
T KOG2373|consen 259 RFPVLNKYLKG-HRPGELTVLTGPTGSGKTTFLSEYSLDLFTQ------GVNTLWGSFEI--PNKRLAHWMLVQYAGYRL 329 (514)
T ss_pred hhhHHHHHhcc-CCCCceEEEecCCCCCceeEehHhhHHHHhh------hhhheeeeeec--chHHHHHHHHHHHccCch
Confidence 47789999965 9999999999999999999999999888754 58899999987 3445543 2211 11
Q ss_pred c-hhhcccchHHHhhc-CeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHH
Q 035774 162 P-EIFHSKGMAQEMAG-RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLIT 239 (357)
Q Consensus 162 ~-~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk 239 (357)
. .......+.+.... .+++..-..-..+...++.+...+--+++.-||||+++.|.....- ...|-..-..|+..++
T Consensus 330 ~drl~~y~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~-~~Drf~~QD~iig~fR 408 (514)
T KOG2373|consen 330 LDRLNSYKHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMM-ALDRFHLQDRIIGYFR 408 (514)
T ss_pred HhhhhhhhHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchh-ccchhhhHHHHHHHHH
Confidence 0 00011112222221 1222222233445566666666665678899999999998765321 1225555667889999
Q ss_pred HHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEE-----eCCeEEE
Q 035774 240 SLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA-----KSGQRFM 314 (357)
Q Consensus 240 ~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~-----~~~~R~l 314 (357)
++|.++||.|-++-|..+..++.. .+....|++. + -.+-+|.++.+.. +.+++++
T Consensus 409 ~fAT~nn~HvTlVvHPRKed~d~E-------------l~t~s~fGsA-k------atQEADNVliiQdkrl~~~rgkkyL 468 (514)
T KOG2373|consen 409 QFATQNNIHVTLVVHPRKEDGDTE-------------LDTQSFFGSA-K------ATQEADNVLIIQDKRLDRDRGKKYL 468 (514)
T ss_pred HHhhccceeEEEEecccccCCCce-------------eeehhhcccc-c------cccccccEEEEeecccccccchhhh
Confidence 999999999999999988655311 1111111111 1 2344566677654 3468999
Q ss_pred EEEeCCCCC-CceeEEEEcCCCcee
Q 035774 315 NVEKSPTSP-PLAFSFTINPSGISL 338 (357)
Q Consensus 315 ~v~K~r~~~-~~~~~f~I~~~Gi~~ 338 (357)
.|.|+|+.+ -+..+.++...+...
T Consensus 469 qi~KNRy~Gdvg~~pLEf~kn~lty 493 (514)
T KOG2373|consen 469 QILKNRYYGDVGSDPLEFVKNPLTY 493 (514)
T ss_pred hhhhhcccCcccccceeeccCCccc
Confidence 999999877 455677777666544
No 67
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.46 E-value=7.7e-13 Score=109.61 Aligned_cols=140 Identities=21% Similarity=0.281 Sum_probs=88.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEeCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (357)
+++|+|+||+|||+|+.+++...+.. +.+++|++.|......... .... .. ....+++.+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~------~~~v~~~~~e~~~~~~~~~-~~~~------~~----~~~~~~~~~~~~ 63 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK------GGKVVYVDIEEEIEELTER-LIGE------SL----KGALDNLIIVFA 63 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc------CCEEEEEECCcchHHHHHH-Hhhh------hh----ccccccEEEEEc
Confidence 47899999999999999999988642 5899999999865542211 1000 00 011233333332
Q ss_pred CC-HHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCC
Q 035774 184 TS-LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSH 260 (357)
Q Consensus 184 ~~-~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~ 260 (357)
.. ..................+++++|||+++.+..............+.+.+..|...+++.++++|+++|......
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 64 TADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccc
Confidence 22 112222222334444567899999999998875422100112345677888889899999999999999876543
No 68
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.35 E-value=1.6e-11 Score=108.17 Aligned_cols=151 Identities=20% Similarity=0.190 Sum_probs=103.6
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCC----CCCeEEEEeCCCCCch--HHHHHHHhccCchhhcccch
Q 035774 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGG----LDGGVIYIDVESTFTS--RRMIEMGASSFPEIFHSKGM 170 (357)
Q Consensus 97 GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg----~~~~vl~i~~e~~~~~--~rl~~~~~~~~~~~~~~~~~ 170 (357)
+-+..|-.+.|+|++|+|||+++++++...+...+|-| ..++|+|+++|..-+. .|+..+... +...+
T Consensus 84 ~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~-----mgLsP- 157 (402)
T COG3598 84 EFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRAR-----MGLSP- 157 (402)
T ss_pred HHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHH-----cCCCh-
Confidence 44677888999999999999999999988876555543 2589999999975332 333333221 11111
Q ss_pred HHHhhcCeEEeCCC------CHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 035774 171 AQEMAGRILVLQPT------SLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEF 244 (357)
Q Consensus 171 ~~~~~~~i~~~~~~------~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~ 244 (357)
....++...+.. +.... .+.++....+.+..+++||||++..++... +...-+++.+++.++++|.+
T Consensus 158 --advrn~dltd~~Gaa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~v~f~~G~----s~s~vqv~~fi~~~rkla~~ 230 (402)
T COG3598 158 --ADVRNMDLTDVSGAADESDVLSP-KLYRRFEKILEQKRPDFVVIDPFVAFYEGK----SISDVQVKEFIKKTRKLARN 230 (402)
T ss_pred --HhhhheeccccccCCCccccccH-HHHHHHHHHHHHhCCCeEEEcchhhhcCCc----cchhHHHHHHHHHHHHHHHh
Confidence 122334432211 11222 445555666667789999999999988652 22336789999999999999
Q ss_pred cCCeEEEeccccccCC
Q 035774 245 SRIPIVVTNQVRPQSH 260 (357)
Q Consensus 245 ~~~~vv~~~q~~~~~~ 260 (357)
++|+|+.++|.++...
T Consensus 231 l~caIiy~hHtskss~ 246 (402)
T COG3598 231 LECAIIYIHHTSKSSG 246 (402)
T ss_pred cCCeEEEEeccccccC
Confidence 9999999999987654
No 69
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=99.18 E-value=4.8e-10 Score=101.76 Aligned_cols=195 Identities=18% Similarity=0.244 Sum_probs=120.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhc--
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAG-- 176 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~-- 176 (357)
-..|...+|-|.||+|||+|++.++..... ...++|+++- .++.++.++.... ..........+...+
T Consensus 7 ~~~G~TLLIKG~PGTGKTtfaLelL~~l~~-------~~~v~YISTR--Vd~d~vy~~y~~~-~~~i~~~~vlDatQd~~ 76 (484)
T PF07088_consen 7 QEPGQTLLIKGEPGTGKTTFALELLNSLKD-------HGNVMYISTR--VDQDTVYEMYPWI-EESIDPTNVLDATQDPF 76 (484)
T ss_pred CCCCcEEEEecCCCCCceeeehhhHHHHhc-------cCCeEEEEec--cCHHHHHHhhhhh-ccccChhhhhhhccchh
Confidence 357999999999999999999999987753 4789999996 4566666543100 000000001111101
Q ss_pred -----CeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEE
Q 035774 177 -----RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVV 251 (357)
Q Consensus 177 -----~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~ 251 (357)
...-........+.++++++.. .....+|++||.-+++..-... ......+..+...|-.+|++.++-+|+
T Consensus 77 ~~~~~~~vp~~~l~~ds~~~f~~~i~~---~~k~~iI~~DSWdaiieyla~~-~~~~ed~e~l~~dLv~lard~g~~LIl 152 (484)
T PF07088_consen 77 ELPLDKDVPFERLDIDSFRDFVDKINE---AGKKPIIAFDSWDAIIEYLAEE-HDEPEDIETLTNDLVELARDMGINLIL 152 (484)
T ss_pred hccccccCcccccCHHHHHHHHHHhhh---cccCcEEEEecHHHHHHHhhhh-hcCcHHHHHHHHHHHHHHhhcCceEEE
Confidence 1111122345566666665433 2456789999955544321111 112234566777888899999999999
Q ss_pred eccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-----CCeEEEEEEeCCCCCC--
Q 035774 252 TNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK-----SGQRFMNVEKSPTSPP-- 324 (357)
Q Consensus 252 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~-----~~~R~l~v~K~r~~~~-- 324 (357)
+.+...... ++.++|.++-+... ...|.+++.|.|+.+-
T Consensus 153 VsEsa~~~~----------------------------------LdYivDGVVTL~v~~derGR~~R~L~LeKLRGV~I~q 198 (484)
T PF07088_consen 153 VSESAENEP----------------------------------LDYIVDGVVTLQVKNDERGRTRRYLRLEKLRGVRIKQ 198 (484)
T ss_pred EEecCCCCc----------------------------------chheeeeEEEEEeccccCCceEEEEEehhhcCcccCC
Confidence 987644321 45667777777532 2368999999999884
Q ss_pred ceeEEEEcCCCceeccC
Q 035774 325 LAFSFTINPSGISLLTD 341 (357)
Q Consensus 325 ~~~~f~I~~~Gi~~~~~ 341 (357)
..+.|+..++-...+.+
T Consensus 199 ~~Y~fTL~nGrF~~f~p 215 (484)
T PF07088_consen 199 RLYPFTLANGRFRSFTP 215 (484)
T ss_pred ccceEEeeCCEEEEecc
Confidence 44677777777776654
No 70
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.83 E-value=4.9e-08 Score=81.22 Aligned_cols=122 Identities=13% Similarity=0.212 Sum_probs=66.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEeCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (357)
+++|.|++|||||+||.+++... +.+++|+++...++.+.-..+.... ..-...+....
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~---------~~~~~y~at~~~~d~em~~rI~~H~-----------~~R~~~w~t~E- 59 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL---------GGPVTYIATAEAFDDEMAERIARHR-----------KRRPAHWRTIE- 59 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc---------CCCeEEEEccCcCCHHHHHHHHHHH-----------HhCCCCceEee-
Confidence 47899999999999999998651 4789999999877654333322210 00011111111
Q ss_pred CCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCC-ChHHHHHHHHHHHHHHHHcCCeEEEec
Q 035774 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP-GQHPLSWHISLITSLAEFSRIPIVVTN 253 (357)
Q Consensus 184 ~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~-r~~~~~~i~~~Lk~la~~~~~~vv~~~ 253 (357)
...++.+.+. .. .+.+.|+||+++.+.......... ....+.+.+..|....++.++++|+++
T Consensus 60 -~~~~l~~~l~---~~---~~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVs 123 (169)
T cd00544 60 -TPRDLVSALK---EL---DPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVS 123 (169)
T ss_pred -cHHHHHHHHH---hc---CCCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 1122222221 11 156789999999987764332110 002233333333333344677666654
No 71
>PRK04296 thymidine kinase; Provisional
Probab=98.79 E-value=2.1e-07 Score=79.22 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=66.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC--CCCCchHHHHHHHhccCchhhcccchHHHhhcCe
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV--ESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI 178 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~--e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i 178 (357)
.|.+++++|++|+|||+++++++.++.. .+.+|+++.. +......+ +... .. . ....+
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~~~------~g~~v~i~k~~~d~~~~~~~---i~~~-lg----~------~~~~~ 60 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNYEE------RGMKVLVFKPAIDDRYGEGK---VVSR-IG----L------SREAI 60 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHH------cCCeEEEEeccccccccCCc---EecC-CC----C------cccce
Confidence 3789999999999999999999998864 2578888843 22111111 1110 00 0 00111
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 179 LVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 179 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+ ....++ +..+.. ...+.++||||.++.+.. .++. .|.+.++..+++|+++.....
T Consensus 61 ~~---~~~~~~---~~~~~~--~~~~~dvviIDEaq~l~~----------~~v~----~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 61 PV---SSDTDI---FELIEE--EGEKIDCVLIDEAQFLDK----------EQVV----QLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred Ee---CChHHH---HHHHHh--hCCCCCEEEEEccccCCH----------HHHH----HHHHHHHHcCCeEEEEecCcc
Confidence 11 222233 333333 345789999999975411 1222 344555678999999876533
No 72
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.75 E-value=1.6e-07 Score=79.23 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=75.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCc---hHHHHHHHhccCchhhcccchHHHhh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT---SRRMIEMGASSFPEIFHSKGMAQEMA 175 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~---~~rl~~~~~~~~~~~~~~~~~~~~~~ 175 (357)
+.+|+++.|+||+|||||||+. |.|.+.+. ...-++|+.+.... ..++++...-.+ +.|...+. ..++
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLR--clN~LE~~-----~~G~I~i~g~~~~~~~~~~~~R~~vGmVF-Q~fnLFPH-lTvl 95 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLR--CLNGLEEP-----DSGSITVDGEDVGDKKDILKLRRKVGMVF-QQFNLFPH-LTVL 95 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHH--HHHCCcCC-----CCceEEECCEeccchhhHHHHHHhcCeec-cccccccc-chHH
Confidence 8899999999999999999998 44555543 35588888754322 222222111111 01111100 0112
Q ss_pred cCeEE----eCCCCHHHHHHHHHHH---------------------------HHHhhhcCeeEEEEeccccccCCCCCCC
Q 035774 176 GRILV----LQPTSLSEFTESLEKI---------------------------KVSLLQNQVKLLVIDSMEALVPGVHEQR 224 (357)
Q Consensus 176 ~~i~~----~~~~~~~~~~~~l~~l---------------------------~~~~~~~~~~lvvIDsl~~l~~~~~~~~ 224 (357)
+|+.. +...+..+..+...++ .+.+ ..+++++..|..++-..
T Consensus 96 eNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL-aM~P~vmLFDEPTSALD------ 168 (240)
T COG1126 96 ENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL-AMDPKVMLFDEPTSALD------ 168 (240)
T ss_pred HHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH-cCCCCEEeecCCcccCC------
Confidence 22211 1111111111111111 0111 24688999998776543
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 225 APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 225 ~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
...+.+++..++.+|++ |.|.++++|-
T Consensus 169 ---PElv~EVL~vm~~LA~e-GmTMivVTHE 195 (240)
T COG1126 169 ---PELVGEVLDVMKDLAEE-GMTMIIVTHE 195 (240)
T ss_pred ---HHHHHHHHHHHHHHHHc-CCeEEEEech
Confidence 36788999999999997 7888888763
No 73
>PF13479 AAA_24: AAA domain
Probab=98.69 E-value=6.3e-07 Score=77.82 Aligned_cols=122 Identities=22% Similarity=0.286 Sum_probs=76.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEe
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL 181 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 181 (357)
+--++|+|+||+|||+|+..+ .+++||++|..... +.. ..+.-.+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------------~k~l~id~E~g~~~--~~~-------------------~~~~~~i 47 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------------PKPLFIDTENGSDS--LKF-------------------LDDGDVI 47 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------------CCeEEEEeCCCccc--hhh-------------------hcCCCee
Confidence 345899999999999999855 35899999985321 110 0112223
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCC---C-C-------C--CC---CCChHHHH-HHHHHHHHHHHH
Q 035774 182 QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPG---V-H-------E--QR---APGQHPLS-WHISLITSLAEF 244 (357)
Q Consensus 182 ~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~---~-~-------~--~~---~~r~~~~~-~i~~~Lk~la~~ 244 (357)
+..+..++.+.+..+... ..+.+.|||||++.+... . . . +. ...+..+. ++.+.++++.+.
T Consensus 48 ~i~s~~~~~~~~~~l~~~--~~~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~ 125 (213)
T PF13479_consen 48 PITSWEDFLEALDELEED--EADYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNA 125 (213)
T ss_pred CcCCHHHHHHHHHHHHhc--cCCCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 344667777766655443 468999999999886322 0 0 0 01 11223333 344455556667
Q ss_pred cCCeEEEeccccccCC
Q 035774 245 SRIPIVVTNQVRPQSH 260 (357)
Q Consensus 245 ~~~~vv~~~q~~~~~~ 260 (357)
.+..||+|.|......
T Consensus 126 ~~~~VI~tah~~~~~~ 141 (213)
T PF13479_consen 126 LGKNVIFTAHAKEEED 141 (213)
T ss_pred CCCcEEEEEEEEEEEc
Confidence 9999999999876544
No 74
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.68 E-value=1.4e-07 Score=78.62 Aligned_cols=123 Identities=13% Similarity=0.238 Sum_probs=68.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEeC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQ 182 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (357)
.+++|.|+||||||+||.+++... +.+++|+++...++.+...++..... .. ...+..+.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---------~~~~~~iat~~~~~~e~~~ri~~h~~----------~R-~~~w~t~E 61 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---------GLQVLYIATAQPFDDEMAARIAHHRQ----------RR-PAHWQTVE 61 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---------CCCcEeCcCCCCChHHHHHHHHHHHh----------cC-CCCCeEec
Confidence 478999999999999999998653 25689999876655543333222100 01 12222222
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecc
Q 035774 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQ 254 (357)
Q Consensus 183 ~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q 254 (357)
+. .++...+. ... .+.++|+||+++.+......... ...+...+..|.+..++.++++|+++.
T Consensus 62 ~~--~~l~~~i~---~~~--~~~~~VlID~Lt~~~~n~l~~~~--~~~~~~~l~~li~~L~~~~~tvVlVs~ 124 (170)
T PRK05800 62 EP--LDLAELLR---ADA--APGRCVLVDCLTTWVTNLLFEEG--EEAIAAEIDALLAALQQLPAKIILVTN 124 (170)
T ss_pred cc--ccHHHHHH---hhc--CCCCEEEehhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 21 12322222 111 24678999999998754321110 022233333344444457888777754
No 75
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.66 E-value=3.5e-07 Score=81.72 Aligned_cols=123 Identities=19% Similarity=0.240 Sum_probs=83.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEE-eCC
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV-LQP 183 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~ 183 (357)
.+|+|+++.|||+++.+|....-...+.++...+|+++.+-...+..++....-. .+.. +.+
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~-----------------~lgaP~~~ 126 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE-----------------ALGAPYRP 126 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH-----------------HhCcccCC
Confidence 8999999999999999999866433222222358999998766666665432211 1111 111
Q ss_pred CCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEec
Q 035774 184 TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTN 253 (357)
Q Consensus 184 ~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~ 253 (357)
. ......-.++...++..+++++|||.+..+... ...+-+++++.||.|..++++++|++.
T Consensus 127 ~--~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG-------s~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 127 R--DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG-------SYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred C--CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc-------cHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 1 122223334455667789999999999998765 234567799999999999999999884
No 76
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.60 E-value=5e-07 Score=77.82 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=34.1
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.++++|+-|.-+.-. ....-.+++..|+.++++.|.|||+++|-
T Consensus 159 ~~P~iilADEPTgnL---------D~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 159 NNPKIILADEPTGNL---------DSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred cCCCeEEeeCccccC---------ChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 478999999766433 22445568899999999999999999885
No 77
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.59 E-value=9.7e-07 Score=78.36 Aligned_cols=151 Identities=15% Similarity=0.263 Sum_probs=88.2
Q ss_pred CchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC--CCchHHHHHHHhccCchh
Q 035774 87 RLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES--TFTSRRMIEMGASSFPEI 164 (357)
Q Consensus 87 G~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~~ 164 (357)
.+..||.+--- +++|+++.|.|.+|+|||||.. +.|.+..+. ..-++++... .++...+++.. ......
T Consensus 18 ~~~al~~vsL~-I~~GeI~GIIG~SGAGKSTLiR--~iN~Le~Pt-----sG~v~v~G~di~~l~~~~Lr~~R-~~IGMI 88 (339)
T COG1135 18 TVTALDDVSLE-IPKGEIFGIIGYSGAGKSTLLR--LINLLERPT-----SGSVFVDGQDLTALSEAELRQLR-QKIGMI 88 (339)
T ss_pred ceeeeccceEE-EcCCcEEEEEcCCCCcHHHHHH--HHhccCCCC-----CceEEEcCEecccCChHHHHHHH-hhccEE
Confidence 46678876443 9999999999999999999998 555655433 4466677643 22332333222 122222
Q ss_pred hcccchH--HHhhcCeEE---eCCCCHHHHHHHHHHHHHHh--------------------------hhcCeeEEEEecc
Q 035774 165 FHSKGMA--QEMAGRILV---LQPTSLSEFTESLEKIKVSL--------------------------LQNQVKLLVIDSM 213 (357)
Q Consensus 165 ~~~~~~~--~~~~~~i~~---~~~~~~~~~~~~l~~l~~~~--------------------------~~~~~~lvvIDsl 213 (357)
|+...+. ..+.+|+.+ ....+..+..+...++...+ --.++++++.|..
T Consensus 89 FQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEa 168 (339)
T COG1135 89 FQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEA 168 (339)
T ss_pred eccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCc
Confidence 2222111 112233322 11112222222222221111 0246999999988
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 214 EALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 214 ~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
++-..+ +.-..++..|+.+.+++|+|||+++|-
T Consensus 169 TSALDP---------~TT~sIL~LL~~In~~lglTIvlITHE 201 (339)
T COG1135 169 TSALDP---------ETTQSILELLKDINRELGLTIVLITHE 201 (339)
T ss_pred cccCCh---------HHHHHHHHHHHHHHHHcCCEEEEEech
Confidence 876544 556678999999999999999999984
No 78
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.55 E-value=1.6e-07 Score=74.80 Aligned_cols=124 Identities=23% Similarity=0.242 Sum_probs=73.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeE
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL 179 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (357)
+.+.++.|.|+||+|||+++.+++.......... ...+++|++.........+.+.... .+ .
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~-------------~l----~ 63 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIK-NHPDVIYVNCPSSRTPRDFAQEILE-------------AL----G 63 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHC-CCEEEEEEEHHHHSSHHHHHHHHHH-------------HH----T
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhcc-CCCcEEEEEeCCCCCHHHHHHHHHH-------------Hh----C
Confidence 3567899999999999999999998775310000 0367888887543333333221111 00 0
Q ss_pred EeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 180 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
... ........+...+.+.+...+..+||||.+..+. . ..++..|+.+..+.++.+|++.+.
T Consensus 64 ~~~-~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 64 LPL-KSRQTSDELRSLLIDALDRRRVVLLVIDEADHLF-S------------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp -SS-SSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH-T------------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ccc-cccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC-C------------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 000 0112333444566666667777899999999874 1 246777888888999999998754
No 79
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.54 E-value=2.1e-06 Score=74.15 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=71.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEe
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL 181 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 181 (357)
...++|+|+||+|||++|.+++ .+.++++.+... .++. .. ...+-+.+-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~-------------~~~~~~~~d~~~--~~l~---g~-------------~~~~v~~~d 60 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP-------------GKTLVLSFDMSS--KVLI---GD-------------ENVDIADHD 60 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC-------------CCCEEEeccccc--hhcc---CC-------------CCCceeecC
Confidence 4679999999999999998663 457778887642 1210 00 000001111
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCC--------CCCC--CCCChHHH-HHHHHHHHHHHHHcCCeEE
Q 035774 182 QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPG--------VHEQ--RAPGQHPL-SWHISLITSLAEFSRIPIV 250 (357)
Q Consensus 182 ~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~--------~~~~--~~~r~~~~-~~i~~~Lk~la~~~~~~vv 250 (357)
.+.+...+.+.+..+... ..+.+.||||+++.+... ...+ ....+..+ .++++.|+.|.. ++..||
T Consensus 61 ~~~~~~~~~d~l~~~~~~--~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~-~g~nII 137 (220)
T TIGR01618 61 DMPPIQAMVEFYVMQNIQ--AVKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE-SNKNIY 137 (220)
T ss_pred CCCCHHHHHHHHHHHHhc--cccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh-CCCcEE
Confidence 233445555555443322 356899999999988652 0000 11122222 245566666644 899999
Q ss_pred Eeccccc
Q 035774 251 VTNQVRP 257 (357)
Q Consensus 251 ~~~q~~~ 257 (357)
+++|...
T Consensus 138 ~tAhe~~ 144 (220)
T TIGR01618 138 ATAWELT 144 (220)
T ss_pred EEEeecc
Confidence 9999854
No 80
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.54 E-value=1e-06 Score=70.33 Aligned_cols=121 Identities=24% Similarity=0.292 Sum_probs=67.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEe
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL 181 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 181 (357)
+..++|.||||+|||+++..++...... ...++|++.+............ . .... ...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~-------------~~~~--~~~ 59 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP------GGGVIYIDGEDILEEVLDQLLL-I-------------IVGG--KKA 59 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC------CCCEEEECCEEccccCHHHHHh-h-------------hhhc--cCC
Confidence 6789999999999999999999877531 1369999987643332221110 0 0000 000
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHH---HHHHHHHHHHcCCeEEEeccc
Q 035774 182 QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWH---ISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 182 ~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i---~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.... ......+...+....+.+|+||.+..+..... ...... ...+.......+..+|++++.
T Consensus 60 -~~~~---~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 60 -SGSG---ELRLRLALALARKLKPDVLILDEITSLLDAEQ-------EALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred -CCCH---HHHHHHHHHHHHhcCCCEEEEECCcccCCHHH-------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 0111 11122333333344579999999998765411 111000 123455556677888888764
No 81
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.46 E-value=1.4e-06 Score=76.60 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=35.4
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-++.... ..--+++..+++++++.|.+||++.|-
T Consensus 155 Q~~~iLLLDEPTs~LDi---------~~Q~evl~ll~~l~~~~~~tvv~vlHD 198 (258)
T COG1120 155 QETPILLLDEPTSHLDI---------AHQIEVLELLRDLNREKGLTVVMVLHD 198 (258)
T ss_pred cCCCEEEeCCCccccCH---------HHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 47899999998876543 233468999999999999999999874
No 82
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.46 E-value=2.3e-06 Score=73.40 Aligned_cols=141 Identities=19% Similarity=0.252 Sum_probs=79.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC--CchHHHHHHHhccCchhhcccchHHH--h
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST--FTSRRMIEMGASSFPEIFHSKGMAQE--M 174 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~~~~~~~~~~--~ 174 (357)
+++|+++.|.|++|+|||+|...++-. +++ ...-++|+.+.- .+..++.++. .++.-.|+...+... +
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~Gl--l~P-----~~GeI~i~G~~i~~ls~~~~~~ir-~r~GvlFQ~gALFssltV 102 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILGL--LRP-----DKGEILIDGEDIPQLSEEELYEIR-KRMGVLFQQGALFSSLTV 102 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHHHHhcc--CCC-----CCCeEEEcCcchhccCHHHHHHHH-hheeEEeeccccccccch
Confidence 899999999999999999999988743 333 355778887752 2333333332 223333433322211 2
Q ss_pred hcCeEEe----CCCCHHHHHHHH-HHH-------------HHHh-------------hhcCeeEEEEeccccccCCCCCC
Q 035774 175 AGRILVL----QPTSLSEFTESL-EKI-------------KVSL-------------LQNQVKLLVIDSMEALVPGVHEQ 223 (357)
Q Consensus 175 ~~~i~~~----~~~~~~~~~~~l-~~l-------------~~~~-------------~~~~~~lvvIDsl~~l~~~~~~~ 223 (357)
.+|+.+. ...+...+.++. .++ +..+ ..-++++++.|.-++=..+
T Consensus 103 ~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDP---- 178 (263)
T COG1127 103 FENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP---- 178 (263)
T ss_pred hHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCc----
Confidence 3344331 011111111111 001 0000 0236888898876654433
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 224 RAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 224 ~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
-..+.+-..++++.+..++|+++++|--
T Consensus 179 -----I~a~~~~~LI~~L~~~lg~T~i~VTHDl 206 (263)
T COG1127 179 -----ISAGVIDELIRELNDALGLTVIMVTHDL 206 (263)
T ss_pred -----chHHHHHHHHHHHHHhhCCEEEEEECCh
Confidence 3344567778888889999999998853
No 83
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.43 E-value=2.3e-06 Score=73.64 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=36.4
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
-+++++|.|..++.... ..-.++++.|..+.++++.+.++++|-
T Consensus 158 ~~PklLIlDEptSaLD~---------siQa~IlnlL~~l~~~~~lt~l~IsHd 201 (252)
T COG1124 158 PEPKLLILDEPTSALDV---------SVQAQILNLLLELKKERGLTYLFISHD 201 (252)
T ss_pred cCCCEEEecCchhhhcH---------HHHHHHHHHHHHHHHhcCceEEEEeCc
Confidence 46999999988876543 344568999999999999999999985
No 84
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.41 E-value=3.2e-06 Score=72.16 Aligned_cols=139 Identities=22% Similarity=0.281 Sum_probs=79.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC--CCchHHHHHHHhccCch---hhcccchHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES--TFTSRRMIEMGASSFPE---IFHSKGMAQE 173 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~---~~~~~~~~~~ 173 (357)
+++|+++.|.|++|+||||++..++- +.+.. ...+.++.++ ..++.+..+..-...++ .|..-.
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~G--l~~~~-----~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LT---- 94 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMG--LVRPR-----SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLT---- 94 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC--CCCCC-----CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCc----
Confidence 78999999999999999999998874 33222 2345555443 22333333322222221 111100
Q ss_pred hhcCeEE----eC-----CCCHHHHHHHHHHHHHHhh--------------------hcCeeEEEEeccccccCCCCCCC
Q 035774 174 MAGRILV----LQ-----PTSLSEFTESLEKIKVSLL--------------------QNQVKLLVIDSMEALVPGVHEQR 224 (357)
Q Consensus 174 ~~~~i~~----~~-----~~~~~~~~~~l~~l~~~~~--------------------~~~~~lvvIDsl~~l~~~~~~~~ 224 (357)
+.+|+.+ .. ....+++.+++..+..... -.+++++++|.-+.=..+
T Consensus 95 VeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP----- 169 (237)
T COG0410 95 VEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP----- 169 (237)
T ss_pred HHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCH-----
Confidence 1112211 00 0113333333333322211 236999999987654433
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 225 APGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 225 ~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
..+.++.+.++.+.++.+++|+++.|-..
T Consensus 170 ----~iv~~I~~~i~~l~~~~g~tIlLVEQn~~ 198 (237)
T COG0410 170 ----KIVEEIFEAIKELRKEGGMTILLVEQNAR 198 (237)
T ss_pred ----HHHHHHHHHHHHHHHcCCcEEEEEeccHH
Confidence 67888999999999998999999988543
No 85
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.39 E-value=5.1e-06 Score=72.77 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=33.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-..=.. ......+++.|+++.++ |++|++++|-
T Consensus 156 ~~p~lllLDEP~~gvD---------~~~~~~i~~lL~~l~~e-g~tIl~vtHD 198 (254)
T COG1121 156 QNPDLLLLDEPFTGVD---------VAGQKEIYDLLKELRQE-GKTVLMVTHD 198 (254)
T ss_pred cCCCEEEecCCcccCC---------HHHHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4799999997654322 24455688899999999 9999999985
No 86
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.37 E-value=1.7e-05 Score=66.06 Aligned_cols=41 Identities=37% Similarity=0.566 Sum_probs=32.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
-+|+|.++.|.||+|+|||||..-++.-.- .+...++|+.-
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-------~d~G~i~i~g~ 63 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLLK-------KDSGEITIDGL 63 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhcc-------ccCceEEEeee
Confidence 389999999999999999999876555432 24668888864
No 87
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=1.2e-05 Score=70.46 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=33.1
Q ss_pred CeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 204 QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 204 ~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
+++++++|.-++... .....+++..|+++.++.+.++|+++|-..
T Consensus 156 ~P~iliLDEPta~LD---------~~~~~~l~~~l~~L~~~~~~tii~~tHd~~ 200 (235)
T COG1122 156 GPEILLLDEPTAGLD---------PKGRRELLELLKKLKEEGGKTIIIVTHDLE 200 (235)
T ss_pred CCCEEEEcCCCCCCC---------HHHHHHHHHHHHHHHhcCCCeEEEEeCcHH
Confidence 466666666555443 355667889999999999999999988533
No 88
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.34 E-value=1.8e-06 Score=68.52 Aligned_cols=107 Identities=25% Similarity=0.308 Sum_probs=61.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEeCCC
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPT 184 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 184 (357)
++|.||||+|||+++..++... +.++++++...-.+. ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---------~~~~~~i~~~~~~~~------------------------------~~~~ 41 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---------GFPFIEIDGSELISS------------------------------YAGD 41 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---------TSEEEEEETTHHHTS------------------------------STTH
T ss_pred CEEECcCCCCeeHHHHHHHhhc---------ccccccccccccccc------------------------------cccc
Confidence 5799999999999999999875 366788877431100 0000
Q ss_pred CHHHHHHHHHHHHHHhhhcC-eeEEEEeccccccCCCCCCCCC--ChHHHHHHHHHHHHHHHH-cCCeEEEeccc
Q 035774 185 SLSEFTESLEKIKVSLLQNQ-VKLLVIDSMEALVPGVHEQRAP--GQHPLSWHISLITSLAEF-SRIPIVVTNQV 255 (357)
Q Consensus 185 ~~~~~~~~l~~l~~~~~~~~-~~lvvIDsl~~l~~~~~~~~~~--r~~~~~~i~~~Lk~la~~-~~~~vv~~~q~ 255 (357)
....+..++.+ ..... +.+++||.+..+.... ..... ....+..++..+...... .++.+|+++..
T Consensus 42 ~~~~i~~~~~~----~~~~~~~~vl~iDe~d~l~~~~-~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 42 SEQKIRDFFKK----AKKSAKPCVLFIDEIDKLFPKS-QPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp HHHHHHHHHHH----HHHTSTSEEEEEETGGGTSHHC-STSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ccccccccccc----ccccccceeeeeccchhccccc-ccccccccccccceeeecccccccccccceeEEeeCC
Confidence 11122233332 22334 7999999999998764 11111 112344455555554443 34677777654
No 89
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.31 E-value=3.8e-06 Score=79.04 Aligned_cols=152 Identities=18% Similarity=0.244 Sum_probs=86.9
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC-CCc-hHHHHHHHhc
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES-TFT-SRRMIEMGAS 159 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~-~~~-~~rl~~~~~~ 159 (357)
.+++ |+..+|.+--. +++|++..|.|++|+|||||+.-+. ...++ ...-+|++... .+. +....+..
T Consensus 12 K~f~-~~~And~V~l~-v~~GeIHaLLGENGAGKSTLm~iL~--G~~~P-----~~GeI~v~G~~v~~~sP~dA~~~G-- 80 (501)
T COG3845 12 KRFP-GVVANDDVSLS-VKKGEIHALLGENGAGKSTLMKILF--GLYQP-----DSGEIRVDGKEVRIKSPRDAIRLG-- 80 (501)
T ss_pred EEcC-CEEecCceeee-ecCCcEEEEeccCCCCHHHHHHHHh--CcccC-----CcceEEECCEEeccCCHHHHHHcC--
Confidence 3566 88888887543 9999999999999999999998554 33333 34567777643 111 11111111
Q ss_pred cCchhhcccchHH--HhhcCeEEeCCC------CHHHHHH----------------------------HHHHHHHHhhhc
Q 035774 160 SFPEIFHSKGMAQ--EMAGRILVLQPT------SLSEFTE----------------------------SLEKIKVSLLQN 203 (357)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~i~~~~~~------~~~~~~~----------------------------~l~~l~~~~~~~ 203 (357)
....++...+++ .+.+|+.+-... +.....+ .++-++.+ -.
T Consensus 81 -IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL--yr 157 (501)
T COG3845 81 -IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL--YR 157 (501)
T ss_pred -CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHH--hc
Confidence 111111100000 011222211110 1111111 11111111 24
Q ss_pred CeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 204 QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 204 ~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
+.+++|+|.-++...+ +++.+++..|++++++ |.+||+++|--.
T Consensus 158 ~a~iLILDEPTaVLTP---------~E~~~lf~~l~~l~~~-G~tIi~ITHKL~ 201 (501)
T COG3845 158 GARLLILDEPTAVLTP---------QEADELFEILRRLAAE-GKTIIFITHKLK 201 (501)
T ss_pred CCCEEEEcCCcccCCH---------HHHHHHHHHHHHHHHC-CCEEEEEeccHH
Confidence 7999999999988765 7888899999988886 999999998544
No 90
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.31 E-value=1.5e-05 Score=64.65 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=45.8
Q ss_pred CCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC--CCchHHHHH
Q 035774 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES--TFTSRRMIE 155 (357)
Q Consensus 84 i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~--~~~~~rl~~ 155 (357)
..++-+-||.+--. +.+|+.+.|.||+|+|||+|..++|.-... ....+||..|. ...++.+++
T Consensus 12 ~a~~a~il~~isl~-v~~Ge~iaitGPSG~GKStllk~va~Lisp-------~~G~l~f~Ge~vs~~~pea~Rq 77 (223)
T COG4619 12 LAGDAKILNNISLS-VRAGEFIAITGPSGCGKSTLLKIVASLISP-------TSGTLLFEGEDVSTLKPEAYRQ 77 (223)
T ss_pred hcCCCeeecceeee-ecCCceEEEeCCCCccHHHHHHHHHhccCC-------CCceEEEcCccccccChHHHHH
Confidence 44556667765433 899999999999999999999988865532 35688888774 334444443
No 91
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.31 E-value=1.8e-05 Score=66.29 Aligned_cols=37 Identities=32% Similarity=0.422 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
++.+.|+||+|||+++.+++...... +.++++++++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~------g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK------GKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC------CCcEEEEEcCC
Confidence 68899999999999999999887642 47899999875
No 92
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.29 E-value=1.5e-05 Score=66.09 Aligned_cols=120 Identities=20% Similarity=0.250 Sum_probs=68.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCe
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI 178 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i 178 (357)
+++|+++.|.|++|+|||||+.-++.. .++. ..-++++...- ....... .....+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~~~~-----~G~v~~~g~~~-~~~~~~~-----------------~~~~~i 77 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGL--YKPD-----SGEILVDGKEV-SFASPRD-----------------ARRAGI 77 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC--CCCC-----CeEEEECCEEC-CcCCHHH-----------------HHhcCe
Confidence 889999999999999999999977643 2222 33456655321 1000000 011123
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 179 LVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 179 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.++...+..+.. .+.-.+.+ -.+++++++|....-... .....+...|++++++ +.++|+++|-.
T Consensus 78 ~~~~qLS~G~~q-rl~laral--~~~p~illlDEP~~~LD~---------~~~~~l~~~l~~~~~~-~~tiii~sh~~ 142 (163)
T cd03216 78 AMVYQLSVGERQ-MVEIARAL--ARNARLLILDEPTAALTP---------AEVERLFKVIRRLRAQ-GVAVIFISHRL 142 (163)
T ss_pred EEEEecCHHHHH-HHHHHHHH--hcCCCEEEEECCCcCCCH---------HHHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 332223443332 22222222 247899999987654432 3344566777777654 88999988753
No 93
>PF05625 PAXNEB: PAXNEB protein; InterPro: IPR008728 The RNA polymerase II elongator complex is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation [, ]. It may also play some role in wobble uridine tRNA modification []. This entry represents the ELP4 subunit. ELP4 is not required for the association of the complex with nascent RNA transcript, but is required for complex integrity and histone acetyltransferase activity. It is also required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA in yeast species.; GO: 0006357 regulation of transcription from RNA polymerase II promoter, 0033588 Elongator holoenzyme complex; PDB: 4EJS_A 4A8J_A.
Probab=98.28 E-value=2.2e-05 Score=73.45 Aligned_cols=222 Identities=16% Similarity=0.188 Sum_probs=109.2
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCC-cHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCc----------
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGT-GKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT---------- 149 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~Gs-GKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~---------- 149 (357)
..-++||+++||.+||||+|-|++++|.-..-+ ==..|+.-|+++.+.. +..+++++....+-
T Consensus 27 ~~~~STG~~sLD~lLGGGlPlGs~llIeEd~~t~ya~~LlkyF~AEGi~~------~h~v~v~~~~~~~~~~LP~~~~~~ 100 (363)
T PF05625_consen 27 QPLTSTGIPSLDDLLGGGLPLGSILLIEEDGTTDYASVLLKYFAAEGIVH------GHHVLVASPPEAWLRELPGPVSES 100 (363)
T ss_dssp SEEE--S-HHHHHHTTSSEETT-EEEEEE-SS--THHHHHHHHHHHHHHH-------EEEEEE-S-GGGGGG-EEE----
T ss_pred CEEEecCChhHHHHhcCCcccccEEEEecCCcCHHHHHHHHHHHHhcccc------CCeEEEEeCChHHHhhCCCccCcc
Confidence 346899999999999999999999999633212 1223445555555543 47788887632110
Q ss_pred ----------------hHHHHHHHhc-----------------cCchhhcccchH--HHhhcCeEEeCCCCH-----HHH
Q 035774 150 ----------------SRRMIEMGAS-----------------SFPEIFHSKGMA--QEMAGRILVLQPTSL-----SEF 189 (357)
Q Consensus 150 ----------------~~rl~~~~~~-----------------~~~~~~~~~~~~--~~~~~~i~~~~~~~~-----~~~ 189 (357)
...+ +|+.. .+...|+..... ......+.++..... ..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~m-KIAWRY~~~~~~~~~~~~~~~~~fcH~FDLsk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (363)
T PF05625_consen 101 EKKEKKSKIAEESSESDEDM-KIAWRYEKLPKFQSSVGSSSYPNFCHQFDLSKRMDPEPLSAEIIFIPPDQPPSSSSSPY 179 (363)
T ss_dssp ------------------------------------------TTSS--EETTSE-SS---TTTEEEE-TTS--------H
T ss_pred hhccccccccccCCCCccCC-eeEeecccCccccccccCCcccccccccccccccChhhccccceEecCCCCcchhHHHH
Confidence 0000 11111 011112211111 011122222222211 234
Q ss_pred HHHHHHHHHHhhh------cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHH--HcCCeEEEeccccccCCC
Q 035774 190 TESLEKIKVSLLQ------NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAE--FSRIPIVVTNQVRPQSHD 261 (357)
Q Consensus 190 ~~~l~~l~~~~~~------~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~--~~~~~vv~~~q~~~~~~~ 261 (357)
..++..+.+.+.. ..+-.|+|-++....+.... ......+-.++..|+.|.+ ..+++++++--..- -
T Consensus 180 ~~ll~~i~~~i~~~~~~~~~~v~RI~I~sl~SP~w~~~~--~~~~~~ll~FL~~LR~LlR~~~s~~v~~iTlP~~L--~- 254 (363)
T PF05625_consen 180 RSLLQQIQQIISKSGFSPPSKVLRIVIPSLGSPLWYPPS--ASQPSELLRFLHSLRALLRKYSSNAVAMITLPSHL--Y- 254 (363)
T ss_dssp HHHHHHHHHHHHH----TTTSEEEEEETTTT-TTTS-GG--GGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEEGTT--S-
T ss_pred HHHHHHHHHHHHhhccCCCCceEEEEEcCCCCcccCCcc--cccHHHHHHHHHHHHHHHhccCCCEEEEEEECHHH--h-
Confidence 5566666665543 36889999999987765322 2223468889999999999 44555555532111 0
Q ss_pred CCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC-------------CeEEEEEEeCCCC----C-
Q 035774 262 ESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS-------------GQRFMNVEKSPTS----P- 323 (357)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~-------------~~R~l~v~K~r~~----~- 323 (357)
.. .+.+-..|.+.+|+++.|+--. ..=.++|.|.+.. +
T Consensus 255 -----------------------~~-~~~~~~~l~~l~D~vi~Le~F~~~~~~~~~~~~~~~~Gll~v~KLp~~~sl~~~ 310 (363)
T PF05625_consen 255 -----------------------PR-SPSLVRRLEHLADGVIELESFAGSMEKETNPPFKDYHGLLHVHKLPRLNSLGPM 310 (363)
T ss_dssp ---------------------------HHHHHHHHHHSSEEEEEEE--HHHHHTTT-GGG---EEEEEEE-TTHHHHT--
T ss_pred -----------------------cc-ChHHHHHHHHhCCEEEEeecCCCccccccCCcCcCCcEEEEEEEeccccccCCC
Confidence 00 1334456899999999997522 1357889997641 1
Q ss_pred ---CceeEEEEcCCCcee
Q 035774 324 ---PLAFSFTINPSGISL 338 (357)
Q Consensus 324 ---~~~~~f~I~~~Gi~~ 338 (357)
.....|++...-+.+
T Consensus 311 ~~~~~~laFKl~Rkkf~I 328 (363)
T PF05625_consen 311 TPDSSDLAFKLKRKKFVI 328 (363)
T ss_dssp --EEEEEEEEE-SS-EEE
T ss_pred CCCccceEEEeeeeeEEE
Confidence 134566665544333
No 94
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.25 E-value=8.3e-06 Score=69.85 Aligned_cols=156 Identities=15% Similarity=0.250 Sum_probs=85.7
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC--CchHHHHHHHhcc
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST--FTSRRMIEMGASS 160 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~--~~~~rl~~~~~~~ 160 (357)
..|-|-..|+.+=-- |++|+++.|.|++|+|||||...+.. +.... ..-+++..++. .....++++. ..
T Consensus 12 ~yp~~~~aL~~Vnl~-I~~GE~VaiIG~SGaGKSTLLR~lng--l~d~t-----~G~i~~~g~~i~~~~~k~lr~~r-~~ 82 (258)
T COG3638 12 TYPGGHQALKDVNLE-INQGEMVAIIGPSGAGKSTLLRSLNG--LVDPT-----SGEILFNGVQITKLKGKELRKLR-RD 82 (258)
T ss_pred ecCCCceeeeeEeEE-eCCCcEEEEECCCCCcHHHHHHHHhc--ccCCC-----cceEEecccchhccchHHHHHHH-Hh
Confidence 455677777776443 99999999999999999999997775 33222 34666666432 1222222222 12
Q ss_pred CchhhcccchHHH--hhcCeE-----E-------eCCCCHHHHHHHHHHHHH------Hh-------------------h
Q 035774 161 FPEIFHSKGMAQE--MAGRIL-----V-------LQPTSLSEFTESLEKIKV------SL-------------------L 201 (357)
Q Consensus 161 ~~~~~~~~~~~~~--~~~~i~-----~-------~~~~~~~~~~~~l~~l~~------~~-------------------~ 201 (357)
....|+...++.. +..|+. + +..++.++-...++.+.+ .. -
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL 162 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARAL 162 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHH
Confidence 2222222211111 111111 1 111222222222222211 00 0
Q ss_pred hcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 202 QNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 202 ~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
-.++++|.-|.-.+-..+ .....+|..|++++++.|+|||+.-|..
T Consensus 163 ~Q~pkiILADEPvasLDp---------~~a~~Vm~~l~~in~~~g~Tvi~nLH~v 208 (258)
T COG3638 163 VQQPKIILADEPVASLDP---------ESAKKVMDILKDINQEDGITVIVNLHQV 208 (258)
T ss_pred hcCCCEEecCCcccccCh---------hhHHHHHHHHHHHHHHcCCEEEEEechH
Confidence 236888888865543332 3445689999999999999999988753
No 95
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=8.6e-05 Score=68.90 Aligned_cols=93 Identities=19% Similarity=0.255 Sum_probs=57.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCc--hHHHHHHHhccCchhhcccchHHHhhc
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFT--SRRMIEMGASSFPEIFHSKGMAQEMAG 176 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~--~~rl~~~~~~~~~~~~~~~~~~~~~~~ 176 (357)
+.+|.++.|+||+|+||||++..++...... +.+|.+|+++..-. .+.+...+. ..
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~------g~~V~lItaDtyR~gAveQLk~yae---------------~l- 260 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQ------NRTVGFITTDTFRSGAVEQFQGYAD---------------KL- 260 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEEeCCccCccHHHHHHHHhh---------------cC-
Confidence 4578999999999999999999999876532 47899999864211 122222111 11
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccc
Q 035774 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216 (357)
Q Consensus 177 ~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l 216 (357)
.+.+....++.++...+..+. ...+.++|+||..+..
T Consensus 261 gvpv~~~~dp~dL~~al~~l~---~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 261 DVELIVATSPAELEEAVQYMT---YVNCVDHILIDTVGRN 297 (407)
T ss_pred CCCEEecCCHHHHHHHHHHHH---hcCCCCEEEEECCCCC
Confidence 122222345555544443322 1246899999987754
No 96
>PRK10867 signal recognition particle protein; Provisional
Probab=98.24 E-value=0.00011 Score=70.12 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=33.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
..++.++|++|+||||++..+|...... . +.+|++++++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~--~---G~kV~lV~~D~ 139 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK--K---KKKVLLVAADV 139 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh--c---CCcEEEEEccc
Confidence 4799999999999999999999877641 1 47899999875
No 97
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.23 E-value=0.00012 Score=69.91 Aligned_cols=40 Identities=25% Similarity=0.167 Sum_probs=33.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+..++.++|++|+||||.+..+|..... . +.+|++++++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~---~---g~kV~lV~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK---K---GLKVGLVAADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH---c---CCeEEEecCCC
Confidence 3568999999999999999999987653 1 47899998864
No 98
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.21 E-value=1.9e-05 Score=66.65 Aligned_cols=136 Identities=19% Similarity=0.256 Sum_probs=71.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC--CCchHHHHHHHhccCchhhcccchHHHhhc
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES--TFTSRRMIEMGASSFPEIFHSKGMAQEMAG 176 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 176 (357)
+.+|+++.|.|++|+|||||+.-++.. .++. ...++++... ..+..+...... ..++......+. ...+
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~--~~~~-----~G~v~~~g~~~~~~~~~~~~~~i~-~~~q~l~~~gl~-~~~~ 92 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGL--LKPS-----SGEILLDGKDLASLSPKELARKIA-YVPQALELLGLA-HLAD 92 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC--CCCC-----CcEEEECCEECCcCCHHHHHHHHh-HHHHHHHHcCCH-hHhc
Confidence 889999999999999999999977643 2222 3345665432 112222211100 000000000000 0111
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 177 ~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
+ .....+..+. ..+.-.+.. -.+++++++|..+.-... .....+.+.|++++++++.++|+++|-.
T Consensus 93 ~--~~~~LS~G~~-qrl~laral--~~~p~llllDEP~~~LD~---------~~~~~~~~~l~~~~~~~~~tiii~sh~~ 158 (180)
T cd03214 93 R--PFNELSGGER-QRVLLARAL--AQEPPILLLDEPTSHLDI---------AHQIELLELLRRLARERGKTVVMVLHDL 158 (180)
T ss_pred C--CcccCCHHHH-HHHHHHHHH--hcCCCEEEEeCCccCCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 1 0112233332 222222222 247899999987754432 3445677788888777789999998753
Q ss_pred c
Q 035774 257 P 257 (357)
Q Consensus 257 ~ 257 (357)
.
T Consensus 159 ~ 159 (180)
T cd03214 159 N 159 (180)
T ss_pred H
Confidence 3
No 99
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.20 E-value=9.8e-05 Score=66.42 Aligned_cols=41 Identities=24% Similarity=0.161 Sum_probs=34.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.++.++.++|++|+||||.+.++|..... . +.+|++++++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~---~---g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKK---Q---GKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh---c---CCEEEEEeCCC
Confidence 34679999999999999999999987753 1 47899999874
No 100
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.20 E-value=1.9e-05 Score=71.50 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=34.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....++..|++++++.+.+||+++|-.
T Consensus 157 ~~p~lLlLDEPt~~LD~---------~~~~~l~~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 157 MRPKIIILDEATSMLDP---------EGRLELIKTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred cCCCEEEEECCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 47899999987765432 4455678889999888899999998753
No 101
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=1.7e-05 Score=66.81 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=70.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC--Cc--hHHHHHHHhccCchhhcccchH--H
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST--FT--SRRMIEMGASSFPEIFHSKGMA--Q 172 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~--~~--~~rl~~~~~~~~~~~~~~~~~~--~ 172 (357)
+++|+++.|.|++|+|||||+.-++.. .+.. ..-++++...- .+ ...... .....++..... .
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~--~~~~-----~G~i~~~g~~~~~~~~~~~~~~~----~i~~~~q~~~~~~~~ 91 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGL--EEPD-----SGSILIDGEDLTDLEDELPPLRR----RIGMVFQDFALFPHL 91 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC--CCCC-----ceEEEECCEEccccchhHHHHhh----cEEEEecCCccCCCC
Confidence 789999999999999999999987743 2222 33455554321 11 111111 000000000000 0
Q ss_pred HhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEe
Q 035774 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVT 252 (357)
Q Consensus 173 ~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~ 252 (357)
...+++.+. .+..+.. .+.-++.. -.+++++++|...+-... .....+...|++++++++.++|++
T Consensus 92 t~~~~l~~~--lS~G~~q-r~~la~al--~~~p~llilDEP~~~LD~---------~~~~~l~~~l~~~~~~~~~tiii~ 157 (178)
T cd03229 92 TVLENIALG--LSGGQQQ-RVALARAL--AMDPDVLLLDEPTSALDP---------ITRREVRALLKSLQAQLGITVVLV 157 (178)
T ss_pred CHHHheeec--CCHHHHH-HHHHHHHH--HCCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEE
Confidence 112222221 2222221 11112222 247899999987654422 344557777888888778999999
Q ss_pred cccc
Q 035774 253 NQVR 256 (357)
Q Consensus 253 ~q~~ 256 (357)
+|-.
T Consensus 158 sH~~ 161 (178)
T cd03229 158 THDL 161 (178)
T ss_pred eCCH
Confidence 8753
No 102
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.19 E-value=1e-05 Score=73.59 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=36.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~ 258 (357)
++++++++|.-+.=.. .....++.+.|+.++++.+++|++++|....
T Consensus 153 ~~P~lliLDEPt~GLD---------p~~~~~~~~~l~~l~~~g~~tvlissH~l~e 199 (293)
T COG1131 153 HDPELLILDEPTSGLD---------PESRREIWELLRELAKEGGVTILLSTHILEE 199 (293)
T ss_pred cCCCEEEECCCCcCCC---------HHHHHHHHHHHHHHHhCCCcEEEEeCCcHHH
Confidence 5789999998765433 2455678889999999988999999997553
No 103
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.19 E-value=3.4e-05 Score=64.66 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=67.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC--CchHHHHHHHhccCchhhcccchH-HHhh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST--FTSRRMIEMGASSFPEIFHSKGMA-QEMA 175 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~~~~~~~~-~~~~ 175 (357)
+++|+++.|.|++|+|||||+.-++... ++. ...++++.+.- .+...+... ....++..... ..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~-----~G~i~~~g~~~~~~~~~~~~~~----i~~~~q~~~~~~~tv~ 93 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL--RPT-----SGRVRLDGADISQWDPNELGDH----VGYLPQDDELFSGSIA 93 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc--CCC-----CCeEEECCEEcccCCHHHHHhh----eEEECCCCccccCcHH
Confidence 7899999999999999999999777532 222 23455554321 111111111 00000000000 0111
Q ss_pred cCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 176 GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 176 ~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
+++ .+..+. +.+.-++.. -.+++++++|..+.-... .....+...|+++++ .+.++|+++|-
T Consensus 94 ~~l-----LS~G~~-qrv~la~al--~~~p~~lllDEPt~~LD~---------~~~~~l~~~l~~~~~-~~~tii~~sh~ 155 (173)
T cd03246 94 ENI-----LSGGQR-QRLGLARAL--YGNPRILVLDEPNSHLDV---------EGERALNQAIAALKA-AGATRIVIAHR 155 (173)
T ss_pred HHC-----cCHHHH-HHHHHHHHH--hcCCCEEEEECCccccCH---------HHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 111 222221 111111222 247899999987755432 334456677777765 48899998874
No 104
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.18 E-value=2e-05 Score=70.80 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=34.3
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++|-|.-+.-. ....-.++++.|+++.+++++++|+++|-
T Consensus 170 ~~P~LlIADEPTTAL---------Dvt~QaqIl~Ll~~l~~e~~~aiilITHD 213 (316)
T COG0444 170 LNPKLLIADEPTTAL---------DVTVQAQILDLLKELQREKGTALILITHD 213 (316)
T ss_pred CCCCEEEeCCCcchh---------hHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 468888888766433 22445678999999999999999999984
No 105
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.18 E-value=1.4e-05 Score=70.32 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=33.0
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+.+.|++++++.+.+||+++|-.
T Consensus 162 ~~p~lllLDEPt~~LD~---------~~~~~l~~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 162 NNPRLVLADEPTGNLDA---------RNADSIFQLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred cCCCEEEEeCCCCCCCH---------HHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 47899999987654432 3444577778888777789999998853
No 106
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.17 E-value=2.9e-05 Score=68.95 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCC---CCeEEEEeCCCCC-chHHHHHHHhccCchhhcccchHH
Q 035774 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGL---DGGVIYIDVESTF-TSRRMIEMGASSFPEIFHSKGMAQ 172 (357)
Q Consensus 97 GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~---~~~vl~i~~e~~~-~~~rl~~~~~~~~~~~~~~~~~~~ 172 (357)
|=+.+|+++.|.|++|+|||||+.-++. ..++..|.. +..+.|+.-+... ....+.+.................
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G--~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 97 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAG--VLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKT 97 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhC--CCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHH
Confidence 4488999999999999999999997764 323233211 1244454433211 111111111100000000000011
Q ss_pred HhhcCeEE-------eCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHc
Q 035774 173 EMAGRILV-------LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFS 245 (357)
Q Consensus 173 ~~~~~i~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~ 245 (357)
.+++.+-+ ....+..+. +.+.-++.+ -.+++++++|..++-... .....+...|++++++.
T Consensus 98 ~~l~~l~l~~~~~~~~~~LSgGe~-qrv~iaraL--~~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~~ 165 (246)
T cd03237 98 EIAKPLQIEQILDREVPELSGGEL-QRVAIAACL--SKDADIYLLDEPSAYLDV---------EQRLMASKVIRRFAENN 165 (246)
T ss_pred HHHHHcCCHHHhhCChhhCCHHHH-HHHHHHHHH--hcCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhc
Confidence 11111111 011122221 111111222 247899999988765533 33445777888888888
Q ss_pred CCeEEEeccc
Q 035774 246 RIPIVVTNQV 255 (357)
Q Consensus 246 ~~~vv~~~q~ 255 (357)
+.+||+++|-
T Consensus 166 ~~tiiivsHd 175 (246)
T cd03237 166 EKTAFVVEHD 175 (246)
T ss_pred CCEEEEEeCC
Confidence 9999999885
No 107
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.17 E-value=0.0002 Score=67.97 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=32.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
..++.++|++|+||||++..+|..... . +.+|+.++++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~---~---G~kV~lV~~D~ 138 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQR---K---GFKPCLVCADT 138 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---C---CCCEEEEcCcc
Confidence 469999999999999999999987653 1 47899998863
No 108
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.17 E-value=1.5e-05 Score=69.41 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=32.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-++-... .....+.+.|++++++.+.+||+++|-
T Consensus 157 ~~p~lllLDEP~~~LD~---------~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 157 NDPKIILADEPTGNLDS---------ETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred cCCCEEEEcCCcccCCH---------HHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 47899999987755432 344557778888887779999999885
No 109
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.16 E-value=1.6e-05 Score=69.33 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=33.0
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-++-... .....+.+.|++++++.+.+||+++|-.
T Consensus 158 ~~p~illlDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tii~~tH~~ 202 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDN---------NNAKIIFDLMLELNRELNTSFLVVTHDL 202 (221)
T ss_pred CCCCEEEEeCCCCcCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 47899999987654432 3444577788888887889999998753
No 110
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=2.6e-05 Score=70.64 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=34.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+...|++++++++++||+++|-.
T Consensus 157 ~~p~lllLDEPt~gLD~---------~~~~~l~~~l~~l~~~~~~tilivsH~~ 201 (279)
T PRK13635 157 LQPDIIILDEATSMLDP---------RGRREVLETVRQLKEQKGITVLSITHDL 201 (279)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 47899999987755432 3445677888888888899999998753
No 111
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.16 E-value=2.8e-05 Score=69.57 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=33.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+...|+.++++++.+||+++|-.
T Consensus 168 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tii~isH~~ 212 (258)
T PRK11701 168 THPRLVFMDEPTGGLDV---------SVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred cCCCEEEEcCCcccCCH---------HHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 47899999987754432 3445677788888888899999998753
No 112
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.16 E-value=1.9e-05 Score=69.28 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=33.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-+.-... .....+...|++++++++.+||+++|-.
T Consensus 163 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 163 GRPDVLFADEPTGNLDR---------QTGDKIADLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred cCCCEEEEeCCCCCCCH---------HHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 47899999987654432 3445677788888888899999998753
No 113
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.15 E-value=2.3e-05 Score=72.68 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=35.1
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.++++++.|.-++-... .....++..|+++.++++.++|+++|--.
T Consensus 178 ~~P~llilDEPts~LD~---------~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 178 CRPKLLIADEPTTALDV---------TVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred cCCCEEEEeCCCccCCH---------HHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 47899999987765432 34456788889998889999999988643
No 114
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.15 E-value=1.3e-05 Score=69.65 Aligned_cols=45 Identities=7% Similarity=0.010 Sum_probs=34.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..+.-... .....+...|++++++.+.+||+++|-.
T Consensus 147 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 147 REPKVFLMDEPLSNLDA---------KLRVQMRAELKRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred cCCCEEEEcCCcccCCH---------HHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 47899999987755432 4455678888888888899999998853
No 115
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.14 E-value=2.5e-06 Score=73.45 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=36.4
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|...+=.. ..+..++...++++.++.+++|+++.|--
T Consensus 166 ~~P~lLLLDEPaAGln---------~~e~~~l~~~i~~i~~~~g~tillIEHdM 210 (250)
T COG0411 166 TQPKLLLLDEPAAGLN---------PEETEELAELIRELRDRGGVTILLIEHDM 210 (250)
T ss_pred cCCCEEEecCccCCCC---------HHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 4799999998775443 36677788899999999999999998853
No 116
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.14 E-value=3.3e-05 Score=65.98 Aligned_cols=93 Identities=22% Similarity=0.274 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEeC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQ 182 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (357)
.++.+.||+|+||||.+..+|+..... +.+|.+++++. +......++.. +.+ .+ ++-++.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~------~~~v~lis~D~-~R~ga~eQL~~-----------~a~-~l-~vp~~~ 61 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK------GKKVALISADT-YRIGAVEQLKT-----------YAE-IL-GVPFYV 61 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT------T--EEEEEEST-SSTHHHHHHHH-----------HHH-HH-TEEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc------cccceeecCCC-CCccHHHHHHH-----------HHH-Hh-ccccch
Confidence 478999999999999999999988753 48899999864 33222222211 111 11 233332
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCeeEEEEecccc
Q 035774 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEA 215 (357)
Q Consensus 183 ~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~ 215 (357)
..+..+..+++.+........+.++|+||..+.
T Consensus 62 ~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 62 ARTESDPAEIAREALEKFRKKGYDLVLIDTAGR 94 (196)
T ss_dssp SSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SS
T ss_pred hhcchhhHHHHHHHHHHHhhcCCCEEEEecCCc
Confidence 222222333333333334456789999998653
No 117
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.14 E-value=2e-05 Score=73.19 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=35.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.++++++.|..++-... ..-..++..|++++++.+++||+++|-..
T Consensus 157 ~~P~iLLlDEPts~LD~---------~t~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 157 SNPKVLLCDEATSALDP---------ATTQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred hCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 47899999987765432 44556788899999989999999988543
No 118
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.13 E-value=2.9e-05 Score=62.26 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+..+.|.|+||+|||+++..++...... +.+++|++...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~------~~~v~~~~~~~ 57 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP------GAPFLYLNASD 57 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC------CCCeEEEehhh
Confidence 46689999999999999999999877521 47788888754
No 119
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.13 E-value=3.1e-05 Score=69.75 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=33.3
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+.+.|++++++.+.+||+++|-.
T Consensus 159 ~~p~lllLDEPt~~LD~---------~~~~~l~~~L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 159 LNPSVIILDEATSMLDP---------DARQNLLDLVRKVKSEHNITIISITHDL 203 (269)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 47899999987765432 3445577778888877789999998753
No 120
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.13 E-value=0.00014 Score=66.84 Aligned_cols=41 Identities=24% Similarity=0.162 Sum_probs=34.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+|.++.+.|++|+||||++..+|...... +++|++++++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~------g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ------GKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc------CCeEEEEecCc
Confidence 468999999999999999999999887631 47899888753
No 121
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.12 E-value=0.00028 Score=67.28 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
-.++.++|++|+||||++.++|...... . +.+|++++++.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~--~---g~kV~lV~~D~ 138 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKK--Q---GKKVLLVACDL 138 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh--C---CCeEEEEeccc
Confidence 4699999999999999999999886421 1 47899999975
No 122
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=1.6e-05 Score=72.08 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=34.0
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-++-... .....+...|++++++.+++||+++|-..
T Consensus 161 ~~p~llllDEPt~gLD~---------~~~~~l~~~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 161 MRPECIIFDEPTAMLDP---------SGRREVVNTIKELNKKYGITIILITHYME 206 (280)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 46899999987755432 34455777888888878999999987543
No 123
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.11 E-value=1.6e-05 Score=67.76 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999986663
No 124
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.11 E-value=2.9e-05 Score=70.58 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=33.7
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+...|+++.++.+.+||+++|-.
T Consensus 162 ~~p~illlDEPt~~LD~---------~~~~~l~~~l~~l~~~~g~tvl~vtH~~ 206 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDP---------QSKRQVMRLLKSLQTDENKTIILVSHDM 206 (286)
T ss_pred hCCCEEEEECCcccCCH---------HHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 47899999987765432 3445677788888877899999998753
No 125
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.11 E-value=3.1e-05 Score=68.07 Aligned_cols=139 Identities=18% Similarity=0.205 Sum_probs=83.3
Q ss_pred chhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC--Cc----hHHHHHHHhccC
Q 035774 88 LKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST--FT----SRRMIEMGASSF 161 (357)
Q Consensus 88 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~--~~----~~rl~~~~~~~~ 161 (357)
+..+|.+=-- +.+|++..|.|++||||||++.-++.-. .+ ..+.+||+...- ++ .+++.+++...
T Consensus 26 v~avd~Vsf~-i~~ge~~glVGESG~GKSTlgr~i~~L~--~p-----t~G~i~f~g~~i~~~~~~~~~~~v~elL~~V- 96 (268)
T COG4608 26 VKAVDGVSFS-IKEGETLGLVGESGCGKSTLGRLILGLE--EP-----TSGEILFEGKDITKLSKEERRERVLELLEKV- 96 (268)
T ss_pred eEEecceeEE-EcCCCEEEEEecCCCCHHHHHHHHHcCc--CC-----CCceEEEcCcchhhcchhHHHHHHHHHHHHh-
Confidence 4566765433 8999999999999999999999777432 22 245677775431 11 12233333210
Q ss_pred chhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHH
Q 035774 162 PEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSL 241 (357)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~l 241 (357)
......+.+ +....+..+. +.+.-.+.. .-+++++|.|-..+.... ..-.++++.|+.+
T Consensus 97 -------gl~~~~~~r--yPhelSGGQr-QRi~IARAL--al~P~liV~DEpvSaLDv---------SiqaqIlnLL~dl 155 (268)
T COG4608 97 -------GLPEEFLYR--YPHELSGGQR-QRIGIARAL--ALNPKLIVADEPVSALDV---------SVQAQILNLLKDL 155 (268)
T ss_pred -------CCCHHHhhc--CCcccCchhh-hhHHHHHHH--hhCCcEEEecCchhhcch---------hHHHHHHHHHHHH
Confidence 011111111 1112233332 222222222 247999999998877643 3334688899999
Q ss_pred HHHcCCeEEEecccc
Q 035774 242 AEFSRIPIVVTNQVR 256 (357)
Q Consensus 242 a~~~~~~vv~~~q~~ 256 (357)
.++++++.++++|--
T Consensus 156 q~~~~lt~lFIsHDL 170 (268)
T COG4608 156 QEELGLTYLFISHDL 170 (268)
T ss_pred HHHhCCeEEEEEEEH
Confidence 999999999999853
No 126
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=3e-05 Score=70.44 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=34.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|..+.-... .....+...|++++++.+.+||+++|-..
T Consensus 158 ~~p~lLilDEPt~gLD~---------~~~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 158 MEPKVLVLDEPTAGLDP---------MGVSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred cCCCEEEEeCCccCCCH---------HHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 47899999987765432 34456778888888888999999987533
No 127
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.10 E-value=3.4e-05 Score=64.64 Aligned_cols=129 Identities=16% Similarity=0.157 Sum_probs=67.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCch-HHHHHHHhccCchhhcccchH--HHhh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS-RRMIEMGASSFPEIFHSKGMA--QEMA 175 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~-~rl~~~~~~~~~~~~~~~~~~--~~~~ 175 (357)
+++|+++.|.|++|+|||||+.-++.. .++. ..-++++.+..... ...++ .....++..... ....
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~--~~~~-----~G~i~~~g~~~~~~~~~~~~----~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGL--LKPD-----SGEIKVLGKDIKKEPEEVKR----RIGYLPEEPSLYENLTVR 91 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC--CCCC-----CeEEEECCEEcccchHhhhc----cEEEEecCCccccCCcHH
Confidence 789999999999999999999977643 2222 33455554321110 11111 000000100000 0011
Q ss_pred cCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 176 GRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 176 ~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
+++. .+..+. ..+.-.+.. -.+++++++|..++-... .....+.+.|++++++ +.++|+++|-
T Consensus 92 ~~~~----LS~G~~-qrv~laral--~~~p~illlDEPt~~LD~---------~~~~~l~~~l~~~~~~-g~tiii~th~ 154 (173)
T cd03230 92 ENLK----LSGGMK-QRLALAQAL--LHDPELLILDEPTSGLDP---------ESRREFWELLRELKKE-GKTILLSSHI 154 (173)
T ss_pred HHhh----cCHHHH-HHHHHHHHH--HcCCCEEEEeCCccCCCH---------HHHHHHHHHHHHHHHC-CCEEEEECCC
Confidence 1111 122221 111111222 247999999987765432 3445577788888776 8899998875
No 128
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.10 E-value=1.7e-05 Score=66.55 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLS 123 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia 123 (357)
+++|+++.|.||+|+|||||...++
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 8899999999999999999998653
No 129
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.09 E-value=2e-05 Score=71.79 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=35.4
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|..++-... .....+.+.|+.++++.+.+||+++|-..
T Consensus 162 ~~P~llllDEPt~~LD~---------~~~~~l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDP---------KGRKEMMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred cCCCEEEEECCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 47999999987765432 44556788889998888999999988533
No 130
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=3.6e-05 Score=66.71 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=33.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+.+.|++++++.+++||+++|-.
T Consensus 145 ~~p~llllDEP~~~LD~---------~~~~~l~~~l~~~~~~~~~tii~~sH~~ 189 (211)
T cd03298 145 RDKPVLLLDEPFAALDP---------ALRAEMLDLVLDLHAETKMTVLMVTHQP 189 (211)
T ss_pred cCCCEEEEcCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 47899999987765432 3344577788888888899999998853
No 131
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.09 E-value=4.4e-05 Score=64.06 Aligned_cols=111 Identities=22% Similarity=0.094 Sum_probs=64.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCe
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI 178 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i 178 (357)
+++|+++.|.|++|+|||||+.-++.. .++. ...++++... +. .. .+ ..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~-----~G~i~~~g~~---------i~--~~---~q----------~~ 70 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQ--LIPN-----GDNDEWDGIT---------PV--YK---PQ----------YI 70 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcC--CCCC-----CcEEEECCEE---------EE--EE---cc----------cC
Confidence 799999999999999999999976643 2222 2234443311 00 00 00 00
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 179 LVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 179 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
. .+..+- +.+.-.+.. -.+++++++|..++-... .....+...|++++++.+.+||+++|-.
T Consensus 71 ~----LSgGq~-qrv~laral--~~~p~lllLDEPts~LD~---------~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 71 D----LSGGEL-QRVAIAAAL--LRNATFYLFDEPSAYLDI---------EQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred C----CCHHHH-HHHHHHHHH--hcCCCEEEEECCcccCCH---------HHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 0 222221 222222222 246899999987655432 3344567777777776558999998853
No 132
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=6.4e-05 Score=61.87 Aligned_cols=120 Identities=22% Similarity=0.258 Sum_probs=69.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCe
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI 178 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i 178 (357)
+++|+++.|.|++|+|||+|+..++.. .+. ...-++++.+...... .. .....+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~--~~~-----~~G~i~~~~~~~~~~~-~~------------------~~~~~i 75 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGL--LKP-----TSGEILIDGKDIAKLP-LE------------------ELRRRI 75 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC--CCC-----CccEEEECCEEcccCC-HH------------------HHHhce
Confidence 789999999999999999999977643 222 2345666654311100 00 111223
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 179 LVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 179 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+....+..+.. .+.-.+..+ .+++++++|....-... .....+.+.|+.+.+. +.++++++|-..
T Consensus 76 ~~~~qlS~G~~~-r~~l~~~l~--~~~~i~ilDEp~~~lD~---------~~~~~l~~~l~~~~~~-~~tii~~sh~~~ 141 (157)
T cd00267 76 GYVPQLSGGQRQ-RVALARALL--LNPDLLLLDEPTSGLDP---------ASRERLLELLRELAEE-GRTVIIVTHDPE 141 (157)
T ss_pred EEEeeCCHHHHH-HHHHHHHHh--cCCCEEEEeCCCcCCCH---------HHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 332223433322 122222222 36899999987754432 3344566777777665 789999987643
No 133
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=3.3e-05 Score=67.38 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=33.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-... .....+...|++++++++.+||+++|-
T Consensus 148 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tvi~~tH~ 191 (220)
T cd03265 148 HRPEVLFLDEPTIGLDP---------QTRAHVWEYIEKLKEEFGMTILLTTHY 191 (220)
T ss_pred cCCCEEEEcCCccCCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47899999987755432 344557778888888889999999875
No 134
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.09 E-value=4.3e-05 Score=66.19 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999999997764
No 135
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.09 E-value=8.3e-05 Score=64.54 Aligned_cols=52 Identities=31% Similarity=0.395 Sum_probs=37.0
Q ss_pred CchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 87 RLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 87 G~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+-..+|++--- ++.|+++++.||+||||||++.-+- ....+ ...-++|+.+.
T Consensus 13 ~~~av~~v~l~-I~~gef~vliGpSGsGKTTtLkMIN-rLiep------t~G~I~i~g~~ 64 (309)
T COG1125 13 NKKAVDDVNLT-IEEGEFLVLIGPSGSGKTTTLKMIN-RLIEP------TSGEILIDGED 64 (309)
T ss_pred CceeeeeeeEE-ecCCeEEEEECCCCCcHHHHHHHHh-cccCC------CCceEEECCee
Confidence 44455665333 8999999999999999999987433 33322 35578888875
No 136
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.08 E-value=2.4e-05 Score=73.59 Aligned_cols=46 Identities=9% Similarity=-0.024 Sum_probs=34.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|...+-... ..-.++.+.|.++.++++.++|+++|--.
T Consensus 181 ~~P~ILLlDEPts~LD~---------~~r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 181 MDADILLMDEPFSALDP---------LIRTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred cCCCEEEEECCCccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 47899999977654432 34456777888888888999999988644
No 137
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.08 E-value=2.1e-05 Score=73.63 Aligned_cols=46 Identities=11% Similarity=0.008 Sum_probs=33.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|...+-... ..-..+...|.++.++.+.|||+++|-..
T Consensus 146 ~~p~iLLlDEP~saLD~---------~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 146 AEPDILLMDEAFSALDP---------LIRDSMQDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 47899999976654322 34455777788888888999999988654
No 138
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.08 E-value=3.4e-05 Score=64.95 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=67.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchH-HHhhcC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMA-QEMAGR 177 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~-~~~~~~ 177 (357)
+++|+++.|.|++|+|||||+..++... ++. ...++++... .. .............++...+. ....++
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~-----~G~i~~~g~~-~~--~~~~~~~~~i~~~~q~~~~~~~tv~~~ 94 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL--KPQ-----QGEITLDGVP-VS--DLEKALSSLISVLNQRPYLFDTTLRNN 94 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC--CCC-----CCEEEECCEE-HH--HHHHHHHhhEEEEccCCeeecccHHHh
Confidence 8899999999999999999999887543 222 2345565532 11 11100111000000000000 011122
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
+ ....+..+. +.+.-.+.. -.+++++++|..++-... .....+.+.|++++ + +.+||+++|-
T Consensus 95 i--~~~LS~G~~-qrv~laral--~~~p~~lllDEP~~~LD~---------~~~~~l~~~l~~~~-~-~~tii~~sh~ 156 (178)
T cd03247 95 L--GRRFSGGER-QRLALARIL--LQDAPIVLLDEPTVGLDP---------ITERQLLSLIFEVL-K-DKTLIWITHH 156 (178)
T ss_pred h--cccCCHHHH-HHHHHHHHH--hcCCCEEEEECCcccCCH---------HHHHHHHHHHHHHc-C-CCEEEEEecC
Confidence 2 112222222 111112222 257899999987765432 33445666777764 3 7899988875
No 139
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.07 E-value=3.1e-05 Score=68.09 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=33.6
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-... .....+.+.|++++++.+.+||+++|-
T Consensus 131 ~~p~lllLDEPt~gLD~---------~~~~~l~~~l~~~~~~~~~tii~~sH~ 174 (230)
T TIGR01184 131 IRPKVLLLDEPFGALDA---------LTRGNLQEELMQIWEEHRVTVLMVTHD 174 (230)
T ss_pred cCCCEEEEcCCCcCCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47899999987755432 344567788888888889999999885
No 140
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.07 E-value=3.5e-05 Score=67.99 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=33.3
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+.+.|++++++.+.++|+++|-.
T Consensus 149 ~~p~llllDEP~~~LD~---------~~~~~l~~~l~~~~~~~~~tiii~sH~~ 193 (236)
T TIGR03864 149 HRPALLLLDEPTVGLDP---------ASRAAIVAHVRALCRDQGLSVLWATHLV 193 (236)
T ss_pred cCCCEEEEcCCccCCCH---------HHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 47899999987654432 3445677888888877789999998753
No 141
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=4.1e-05 Score=70.91 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=35.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.++++++.|..++-... ....++++.|+.+.++.+.++|+++|--.
T Consensus 170 ~~P~llilDEPts~LD~---------~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 170 CRPKLLIADEPTTALDV---------TIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred hCCCEEEEeCCCCCCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 47899999987765432 44456788899998888999999988643
No 142
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=2.3e-05 Score=70.92 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=33.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|..+.-... .....+.+.|++++++++++||+++|-..
T Consensus 154 ~~p~llilDEPt~gLD~---------~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 199 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDP---------QGVKELIDFLNDLPETYGMTVIFSTHQLD 199 (277)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 47899999987754432 33445777888888888999999987533
No 143
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.06 E-value=4.8e-05 Score=67.38 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=32.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..+.-... .....+...|++++++.+.+||+++|-
T Consensus 148 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~~g~tii~~sH~ 191 (241)
T PRK14250 148 NNPEVLLLDEPTSALDP---------TSTEIIEELIVKLKNKMNLTVIWITHN 191 (241)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 47899999987755432 334457778888888779999999875
No 144
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=4.1e-05 Score=70.85 Aligned_cols=46 Identities=11% Similarity=0.041 Sum_probs=35.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++|.|..++-... .....+++.|+++.++.++++|+++|--.
T Consensus 171 ~~P~lLilDEPts~LD~---------~~~~~i~~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 171 LDPDVVVADEPVSALDV---------SVQAQVLNLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred cCCCEEEEECCCccCCH---------HHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 46899999988765532 34456788899998889999999988643
No 145
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.06 E-value=2.7e-05 Score=68.92 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=33.3
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-... .....+.+.|++++++.+.+||+++|-
T Consensus 161 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tii~~tH~ 204 (241)
T cd03256 161 QQPKLILADEPVASLDP---------ASSRQVMDLLKRINREEGITVIVSLHQ 204 (241)
T ss_pred cCCCEEEEeCccccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47899999987755432 445567788888888789999999875
No 146
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.05 E-value=3.1e-05 Score=71.08 Aligned_cols=34 Identities=32% Similarity=0.289 Sum_probs=27.4
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
.|+.+-- -+++|+++.|.||+|+|||||+..++.
T Consensus 22 ~l~~vsl-~i~~Gei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 22 VVDGLSF-HVQRGECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred EEecceE-EEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4444422 388999999999999999999998774
No 147
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.05 E-value=4.8e-05 Score=67.07 Aligned_cols=44 Identities=18% Similarity=0.055 Sum_probs=33.0
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-... .....+.+.|++++++.+.+||+++|-
T Consensus 153 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tvi~vsH~ 196 (235)
T cd03261 153 LDPELLLYDEPTAGLDP---------IASGVIDDLIRSLKKELGLTSIMVTHD 196 (235)
T ss_pred cCCCEEEecCCcccCCH---------HHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 47899999987755432 344557778888887778999999875
No 148
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.05 E-value=5.7e-05 Score=72.92 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=36.4
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.++++||.|...+.... .....+++.|+++.+++|++.++++|-
T Consensus 446 ~~P~lli~DEp~SaLDv---------svqa~VlnLl~~lq~e~g~t~lfISHD 489 (539)
T COG1123 446 LEPKLLILDEPVSALDV---------SVQAQVLNLLKDLQEELGLTYLFISHD 489 (539)
T ss_pred cCCCEEEecCCccccCH---------HHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 36999999987765433 556678999999999999999999985
No 149
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.05 E-value=4.9e-05 Score=65.67 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999987764
No 150
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.04 E-value=3.6e-05 Score=66.38 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++-
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999999997774
No 151
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=2.7e-05 Score=73.80 Aligned_cols=46 Identities=11% Similarity=-0.012 Sum_probs=33.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|...+-... .....+...|+++.++.+.+||+++|-..
T Consensus 181 ~~P~iLLLDEPts~LD~---------~~r~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 181 INPDILLMDEAFSALDP---------LIRTEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred cCCCEEEEECCCccCCH---------HHHHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 47899999987654432 34445777788888888999999988644
No 152
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=3.3e-05 Score=69.63 Aligned_cols=44 Identities=11% Similarity=-0.029 Sum_probs=32.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-++-... .....+...|+.++++.+.+||+++|-
T Consensus 177 ~~p~illLDEPt~~LD~---------~~~~~l~~~l~~~~~~~g~tiii~tH~ 220 (269)
T cd03294 177 VDPDILLMDEAFSALDP---------LIRREMQDELLRLQAELQKTIVFITHD 220 (269)
T ss_pred cCCCEEEEcCCCccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47899999987654432 445567778888887778999999885
No 153
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.03 E-value=5.4e-05 Score=69.42 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=32.7
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-+.-... .....+...|++++++ +.+||+++|-..
T Consensus 141 ~~p~lllLDEPt~gLD~---------~~~~~l~~~l~~~~~~-g~tvi~~sH~~~ 185 (302)
T TIGR01188 141 HQPDVLFLDEPTTGLDP---------RTRRAIWDYIRALKEE-GVTILLTTHYME 185 (302)
T ss_pred cCCCEEEEeCCCcCCCH---------HHHHHHHHHHHHHHhC-CCEEEEECCCHH
Confidence 47999999987765432 3344567777887755 899999998644
No 154
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=3.6e-05 Score=66.77 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=33.3
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-++-... .....+.+.|++++++.+.+||+++|-
T Consensus 147 ~~p~~lllDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tii~~sH~ 190 (213)
T cd03259 147 REPSLLLLDEPLSALDA---------KLREELREELKELQRELGITTIYVTHD 190 (213)
T ss_pred cCCCEEEEcCCcccCCH---------HHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 47899999987755432 344567788888888779999999885
No 155
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.03 E-value=6e-05 Score=65.12 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999998774
No 156
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.03 E-value=3.5e-05 Score=68.63 Aligned_cols=142 Identities=18% Similarity=0.126 Sum_probs=72.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCC----CCCeEEEEeCCCCCch---HHHHHHHhccCchhhcccchH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGG----LDGGVIYIDVESTFTS---RRMIEMGASSFPEIFHSKGMA 171 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg----~~~~vl~i~~e~~~~~---~rl~~~~~~~~~~~~~~~~~~ 171 (357)
+++|+++.|.|++|+|||||+.-++.. .++..|. ....+.|+..+..+.. ..+.+..... .. .. ....
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl--~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~-~~-~~-~~~~ 101 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGL--VAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLR-PG-TK-KEDI 101 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC--CCCCceEEEECCccCEEEeccccccccccChhHHHHHhcc-cc-cc-HHHH
Confidence 889999999999999999999977643 2222220 0123455543322211 1121111000 00 00 0001
Q ss_pred HHhhcCeEE-------eCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 035774 172 QEMAGRILV-------LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEF 244 (357)
Q Consensus 172 ~~~~~~i~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~ 244 (357)
...++.+-+ ....+..+. ..+.-.+.. -.+++++++|..+.-... .....+.+.|++++++
T Consensus 102 ~~~l~~~gl~~~~~~~~~~LSgGq~-qrv~laral--~~~p~lllLDEPt~~LD~---------~~~~~l~~~L~~~~~~ 169 (251)
T PRK09544 102 LPALKRVQAGHLIDAPMQKLSGGET-QRVLLARAL--LNRPQLLVLDEPTQGVDV---------NGQVALYDLIDQLRRE 169 (251)
T ss_pred HHHHHHcCChHHHhCChhhCCHHHH-HHHHHHHHH--hcCCCEEEEeCCCcCCCH---------HHHHHHHHHHHHHHHh
Confidence 111111111 011122221 111111222 247899999987755432 3344577788888887
Q ss_pred cCCeEEEeccccc
Q 035774 245 SRIPIVVTNQVRP 257 (357)
Q Consensus 245 ~~~~vv~~~q~~~ 257 (357)
++.+||+++|-..
T Consensus 170 ~g~tiiivsH~~~ 182 (251)
T PRK09544 170 LDCAVLMVSHDLH 182 (251)
T ss_pred cCCEEEEEecCHH
Confidence 7999999988644
No 157
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=7.1e-05 Score=62.56 Aligned_cols=27 Identities=33% Similarity=0.527 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 889999999999999999999977653
No 158
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.03 E-value=4.4e-05 Score=65.65 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999886664
No 159
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=2.7e-05 Score=72.65 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=35.1
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|..++-... .....+.+.|++++++.+++||+++|-..
T Consensus 157 ~~p~iLlLDEPts~LD~---------~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 157 SNPKVLLCDEATSALDP---------ATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 47999999987755432 34456778888888888999999988654
No 160
>PRK12377 putative replication protein; Provisional
Probab=98.02 E-value=6.6e-05 Score=66.40 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=31.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.-+.|.|+||+|||.|+..++...... +..|+|++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~------g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK------GRSVIVVTVP 138 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc------CCCeEEEEHH
Confidence 468999999999999999999887642 4789999774
No 161
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.02 E-value=7.6e-05 Score=66.58 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=32.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-... .....+...|++++++.+.+||+++|-
T Consensus 165 ~~p~vlllDEP~~~LD~---------~~~~~l~~~l~~~~~~~~~tii~vsH~ 208 (253)
T TIGR02323 165 TRPRLVFMDEPTGGLDV---------SVQARLLDLLRGLVRDLGLAVIIVTHD 208 (253)
T ss_pred cCCCEEEEcCCCccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47899999987654432 334456777888888789999999885
No 162
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.02 E-value=6e-05 Score=65.72 Aligned_cols=44 Identities=5% Similarity=-0.022 Sum_probs=33.1
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-... .....+.+.|+++.++.+.+||+++|-
T Consensus 148 ~~p~lllLDEPt~~LD~---------~~~~~~~~~l~~~~~~~~~tiii~sH~ 191 (220)
T cd03293 148 VDPDVLLLDEPFSALDA---------LTREQLQEELLDIWRETGKTVLLVTHD 191 (220)
T ss_pred cCCCEEEECCCCCCCCH---------HHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 47899999987754432 344567778888888788999999875
No 163
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.02 E-value=2.3e-05 Score=64.96 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=36.8
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
...+.|-+.|+.+--- +++|+++-|.||+|+|||||..-+....
T Consensus 9 k~Y~~g~~aL~~vs~~-i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 9 KAYPGGREALRDVSFH-IPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred hhcCCCchhhhCceEe-ecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 3577786689988654 9999999999999999999998776544
No 164
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.02 E-value=7.5e-05 Score=65.39 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=33.4
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..+.-... .....+.+.|+.++++.+.+||+++|-
T Consensus 154 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 154 FMPKVLLLDEITSALDE---------SNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 47899999987654432 345567788888888889999999875
No 165
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=7e-05 Score=67.95 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=33.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..+.-... .....+...|++++++.+.+||+++|-.
T Consensus 160 ~~P~llllDEPt~gLD~---------~~~~~l~~~l~~l~~~~g~tvli~tH~~ 204 (282)
T PRK13640 160 VEPKIIILDESTSMLDP---------AGKEQILKLIRKLKKKNNLTVISITHDI 204 (282)
T ss_pred cCCCEEEEECCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 47899999987755432 3445677888888888899999998753
No 166
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.01 E-value=4.3e-05 Score=67.51 Aligned_cols=46 Identities=11% Similarity=0.067 Sum_probs=33.6
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|..+.-... .....+.+.|++++++.+++||+++|-..
T Consensus 147 ~~p~llllDEP~~~LD~---------~~~~~~~~~l~~~~~~~~~tvli~sH~~~ 192 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDA---------KVRKELRSWLRKLHDEVHVTTVFVTHDQE 192 (237)
T ss_pred cCCCEEEEcCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 46899999987654332 44556777888888777899999988533
No 167
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.01 E-value=4.9e-05 Score=66.92 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=32.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-... .....+.+.|+.++++.+.+||+++|-
T Consensus 157 ~~p~lllLDEP~~~LD~---------~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 157 NNPKVLLCDEATSALDP---------ETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred cCCCEEEecCCCCcCCH---------HHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999987654322 344557778888888889999999875
No 168
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=3.9e-05 Score=67.53 Aligned_cols=45 Identities=16% Similarity=0.043 Sum_probs=32.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|....-... .....+...|+.++++.+++||+++|-.
T Consensus 147 ~~p~llllDEP~~gLD~---------~~~~~l~~~l~~~~~~~~~tiii~sh~~ 191 (232)
T cd03300 147 NEPKVLLLDEPLGALDL---------KLRKDMQLELKRLQKELGITFVFVTHDQ 191 (232)
T ss_pred cCCCEEEEcCCcccCCH---------HHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 47899999977654322 3444577788888887799999998753
No 169
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=5.5e-05 Score=68.46 Aligned_cols=45 Identities=7% Similarity=0.142 Sum_probs=33.7
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..+.-... .....+...|++++++++.+||+++|-.
T Consensus 157 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~l~~~~g~tiil~sH~~ 201 (277)
T PRK13642 157 LRPEIIILDESTSMLDP---------TGRQEIMRVIHEIKEKYQLTVLSITHDL 201 (277)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 36899999987654432 4455677888888888899999998753
No 170
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=6.5e-05 Score=67.87 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=32.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+...|++++++ +++||+++|-.
T Consensus 155 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~-g~tili~tH~~ 198 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDP---------RGQETLMEILDRLHNQ-GKTVIVATHDV 198 (274)
T ss_pred cCCCEEEEECCCcCCCH---------HHHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 47899999987765432 3445677788888765 89999998753
No 171
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.99 E-value=0.00011 Score=65.70 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=33.6
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-.. ......+...|++++++.+.+||+++|-.
T Consensus 150 ~~p~lllLDEPt~~LD---------~~~~~~l~~~L~~~~~~~~~tviivsHd~ 194 (257)
T PRK11247 150 HRPGLLLLDEPLGALD---------ALTRIEMQDLIESLWQQHGFTVLLVTHDV 194 (257)
T ss_pred cCCCEEEEeCCCCCCC---------HHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4789999998765442 23445677788888888899999998853
No 172
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.99 E-value=4.9e-05 Score=65.95 Aligned_cols=45 Identities=9% Similarity=0.074 Sum_probs=33.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+...|+++.++.+.+||+++|-.
T Consensus 145 ~~p~llllDEPt~~LD~---------~~~~~~~~~l~~~~~~~~~tii~vsh~~ 189 (213)
T TIGR01277 145 RPNPILLLDEPFSALDP---------LLREEMLALVKQLCSERQRTLLMVTHHL 189 (213)
T ss_pred cCCCEEEEcCCCccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46899999987765432 3445677788888887799999998753
No 173
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.98 E-value=4e-05 Score=70.64 Aligned_cols=51 Identities=25% Similarity=0.421 Sum_probs=36.9
Q ss_pred chhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 88 LKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 88 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
...+|.+=- -+++|+++.+.||+||||||++.-+|--. ++ ...-++++.+.
T Consensus 18 ~~av~~isl-~i~~Gef~~lLGPSGcGKTTlLR~IAGfe--~p-----~~G~I~l~G~~ 68 (352)
T COG3842 18 FTAVDDISL-DIKKGEFVTLLGPSGCGKTTLLRMIAGFE--QP-----SSGEILLDGED 68 (352)
T ss_pred eeEEeccee-eecCCcEEEEECCCCCCHHHHHHHHhCCC--CC-----CCceEEECCEE
Confidence 555666422 39999999999999999999999777432 22 34467776653
No 174
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.98 E-value=6.5e-05 Score=63.52 Aligned_cols=28 Identities=36% Similarity=0.630 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
.|+++.++.+.||+|||||||+..+-.-
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHhh
Confidence 5999999999999999999999866543
No 175
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=7e-05 Score=67.54 Aligned_cols=45 Identities=4% Similarity=0.090 Sum_probs=32.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|....-... .....+...|++++++.+.+||+++|-.
T Consensus 159 ~~p~lllLDEP~~gLD~---------~~~~~l~~~l~~~~~~~~~tiii~sH~~ 203 (271)
T PRK13632 159 LNPEIIIFDESTSMLDP---------KGKREIKKIMVDLRKTRKKTLISITHDM 203 (271)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCcEEEEEEech
Confidence 47899999987654432 3445677888888877678999888753
No 176
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=0.00027 Score=66.05 Aligned_cols=44 Identities=32% Similarity=0.502 Sum_probs=35.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+..|.++.|.||+|+||||++..++...+.. .| ..+|.+|+++.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~--~G--~~~V~lit~D~ 177 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMR--FG--ASKVALLTTDS 177 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC--CCeEEEEeccc
Confidence 6778999999999999999999999887542 12 25788888764
No 177
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=3.7e-05 Score=69.92 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=34.0
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..+.-... .....+...|+.++++.+.+||+++|-.
T Consensus 161 ~~P~llllDEPt~gLD~---------~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 205 (287)
T PRK13637 161 MEPKILILDEPTAGLDP---------KGRDEILNKIKELHKEYNMTIILVSHSM 205 (287)
T ss_pred cCCCEEEEECCccCCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46899999987765432 3445677788888888899999998753
No 178
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=9e-05 Score=65.21 Aligned_cols=46 Identities=7% Similarity=0.151 Sum_probs=33.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|....-... .....+.+.|+.++++.+.+||+++|-..
T Consensus 146 ~~p~lllLDEP~~gLD~---------~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 191 (232)
T PRK10771 146 REQPILLLDEPFSALDP---------ALRQEMLTLVSQVCQERQLTLLMVSHSLE 191 (232)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 47899999987654432 34445777888888878999999987533
No 179
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=5.1e-05 Score=67.11 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=33.0
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-... .....+...|++++++.+.+||+++|-
T Consensus 153 ~~p~llllDEP~~~LD~---------~~~~~l~~~l~~~~~~~~~tvii~sH~ 196 (239)
T cd03296 153 VEPKVLLLDEPFGALDA---------KVRKELRRWLRRLHDELHVTTVFVTHD 196 (239)
T ss_pred cCCCEEEEcCCcccCCH---------HHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999987755432 344557778888888778999999875
No 180
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.96 E-value=6.9e-05 Score=64.60 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999999997764
No 181
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.96 E-value=6.3e-05 Score=65.23 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++-
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999997774
No 182
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.95 E-value=0.00018 Score=62.80 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=33.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..+.-... .....+...|++++++.+.+||+++|-
T Consensus 158 ~~p~illlDEP~~~LD~---------~~~~~l~~~l~~~~~~~~~tii~~sh~ 201 (220)
T TIGR02982 158 HRPKLVLADEPTAALDS---------KSGRDVVELMQKLAREQGCTILIVTHD 201 (220)
T ss_pred cCCCEEEEeCCCCcCCH---------HHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999987765432 344467788888888789999999875
No 183
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.95 E-value=7.9e-05 Score=64.64 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G 49 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYK 49 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999999997774
No 184
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.94 E-value=4.9e-05 Score=67.10 Aligned_cols=45 Identities=7% Similarity=0.037 Sum_probs=33.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+.+.|++++++.+.+||+++|-.
T Consensus 170 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tiiivsH~~ 214 (236)
T cd03267 170 HEPEILFLDEPTIGLDV---------VAQENIRNFLKEYNRERGTTVLLTSHYM 214 (236)
T ss_pred cCCCEEEEcCCCCCCCH---------HHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 47899999987755432 4455677888888887789999998853
No 185
>PF13173 AAA_14: AAA domain
Probab=97.94 E-value=0.00015 Score=57.43 Aligned_cols=98 Identities=20% Similarity=0.274 Sum_probs=63.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEe
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL 181 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 181 (357)
+.+++|.|+.|+|||+++.+++..... +..++|++++.. +...... .+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~-------~~~~~yi~~~~~----~~~~~~~----------------~~----- 49 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLP-------PENILYINFDDP----RDRRLAD----------------PD----- 49 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc-------cccceeeccCCH----HHHHHhh----------------hh-----
Confidence 568999999999999999999987752 378999998762 1111000 00
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHc-CCeEEEeccccc
Q 035774 182 QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFS-RIPIVVTNQVRP 257 (357)
Q Consensus 182 ~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~-~~~vv~~~q~~~ 257 (357)
+.+. +.+.. ..+..+|+||.++.+- .+...++.+.... ++.++++.....
T Consensus 50 -------~~~~---~~~~~-~~~~~~i~iDEiq~~~---------------~~~~~lk~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 50 -------LLEY---FLELI-KPGKKYIFIDEIQYLP---------------DWEDALKFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred -------hHHH---HHHhh-ccCCcEEEEehhhhhc---------------cHHHHHHHHHHhccCceEEEEccchH
Confidence 1111 11111 1267889999998761 1455677777766 789998875433
No 186
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.94 E-value=5e-05 Score=67.30 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=32.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-... .....+.+.|++++++.+++||+++|-
T Consensus 162 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tiii~tH~ 205 (243)
T TIGR02315 162 QQPDLILADEPIASLDP---------KTSKQVMDYLKRINKEDGITVIINLHQ 205 (243)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46899999987654432 334456778888887778999999875
No 187
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.94 E-value=0.00011 Score=62.59 Aligned_cols=135 Identities=17% Similarity=0.122 Sum_probs=66.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCe
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI 178 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i 178 (357)
+.+|+++.|.|++|+|||||+.-++-....+.. ..-++++.+.- . .++..... ...+....... ....+++
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~-----~G~i~~~g~~~-~-~~~~~~i~-~~~q~~~~~~~-~tv~~~l 100 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI-----TGEILINGRPL-D-KNFQRSTG-YVEQQDVHSPN-LTVREAL 100 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc-----ceEEEECCEeh-H-HHhhhceE-EecccCccccC-CcHHHHH
Confidence 789999999999999999999987743211111 33456655421 1 11111000 00000000000 0000111
Q ss_pred EE---eCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 179 LV---LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 179 ~~---~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+ ....+..+.. .+.-.+.. -.+++++++|...+-... .....+...|+++++ .+.++|+++|-
T Consensus 101 ~~~~~~~~LSgGe~q-rv~la~al--~~~p~vlllDEP~~~LD~---------~~~~~l~~~l~~~~~-~~~tiiivtH~ 167 (192)
T cd03232 101 RFSALLRGLSVEQRK-RLTIGVEL--AAKPSILFLDEPTSGLDS---------QAAYNIVRFLKKLAD-SGQAILCTIHQ 167 (192)
T ss_pred HHHHHHhcCCHHHhH-HHHHHHHH--hcCCcEEEEeCCCcCCCH---------HHHHHHHHHHHHHHH-cCCEEEEEEcC
Confidence 00 0012222211 11111122 247899999987755432 334456677777765 48999998875
No 188
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.94 E-value=0.00012 Score=62.97 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999997764
No 189
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.94 E-value=0.00019 Score=58.69 Aligned_cols=41 Identities=29% Similarity=0.305 Sum_probs=32.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+.||++..|.|++|||||||...++.+..- . .+.+.|..-.
T Consensus 29 l~PGeVLgiVGESGSGKtTLL~~is~rl~p--~----~G~v~Y~~r~ 69 (258)
T COG4107 29 LYPGEVLGIVGESGSGKTTLLKCISGRLTP--D----AGTVTYRMRD 69 (258)
T ss_pred ecCCcEEEEEecCCCcHHhHHHHHhcccCC--C----CCeEEEEcCC
Confidence 789999999999999999999988876642 2 2567776644
No 190
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.94 E-value=4.1e-05 Score=71.56 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=33.7
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-.+-... ..-..+.+.|+++.+++++++|+++|-..
T Consensus 153 ~~P~llLLDEP~s~LD~---------~~r~~l~~~L~~l~~~~g~tii~vTHd~~ 198 (353)
T PRK10851 153 VEPQILLLDEPFGALDA---------QVRKELRRWLRQLHEELKFTSVFVTHDQE 198 (353)
T ss_pred cCCCEEEEeCCCccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 47899999976644322 33445677888888888999999988654
No 191
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=9.2e-05 Score=69.70 Aligned_cols=43 Identities=28% Similarity=0.290 Sum_probs=34.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
..++.++.|.|++|+||||++.++|...... .+.+|.+++++.
T Consensus 220 ~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~-----~G~~V~Lit~Dt 262 (432)
T PRK12724 220 KNQRKVVFFVGPTGSGKTTSIAKLAAKYFLH-----MGKSVSLYTTDN 262 (432)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCeEEEecccc
Confidence 4567899999999999999999999866321 247899998864
No 192
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.94 E-value=6.9e-05 Score=65.24 Aligned_cols=26 Identities=46% Similarity=0.531 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999987764
No 193
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.93 E-value=9.8e-05 Score=62.39 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 889999999999999999999977643
No 194
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.93 E-value=7.7e-05 Score=66.51 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=33.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+...|++++++.+.++|+++|-.
T Consensus 163 ~~p~llllDEP~~~LD~---------~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 163 MRPKVMLFDEVTSALDP---------ELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 47899999987654422 3344577788888887899999998853
No 195
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=6.2e-05 Score=70.46 Aligned_cols=46 Identities=7% Similarity=-0.065 Sum_probs=33.7
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-.+-.. ...-..+...|+++.++.++++|+++|-..
T Consensus 151 ~~P~llLLDEP~s~LD---------~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 151 REPAVFLFDEPLSNLD---------AKLRVQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred cCCCEEEEeCCcccCC---------HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4799999997664432 233445677788888889999999998643
No 196
>PRK14974 cell division protein FtsY; Provisional
Probab=97.92 E-value=0.0002 Score=66.18 Aligned_cols=39 Identities=31% Similarity=0.248 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
++.++.++|+||+||||.+..++..... . +.+|++++++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~---~---g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK---N---GFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH---c---CCeEEEecCC
Confidence 3579999999999999999999976542 1 4688888775
No 197
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=6.4e-05 Score=68.49 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=33.6
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+.+.|++++++.+.+||+++|-.
T Consensus 167 ~~p~lLlLDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tiiiisH~~ 211 (289)
T PRK13645 167 MDGNTLVLDEPTGGLDP---------KGEEDFINLFERLNKEYKKRIIMVTHNM 211 (289)
T ss_pred hCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 46899999987765432 3344577778888887899999998853
No 198
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.92 E-value=3.9e-05 Score=67.64 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 78999999999999999999997764
No 199
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.92 E-value=6e-05 Score=65.39 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 88999999999999999999997764
No 200
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.92 E-value=7.9e-05 Score=69.59 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=34.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~ 258 (357)
.+++++++|.-.+-.. .....++...|+++.++.++++|+++|-...
T Consensus 153 ~~P~lLLLDEP~s~LD---------~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e 199 (351)
T PRK11432 153 LKPKVLLFDEPLSNLD---------ANLRRSMREKIRELQQQFNITSLYVTHDQSE 199 (351)
T ss_pred cCCCEEEEcCCcccCC---------HHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 3689999997654432 2334456778888888899999999986543
No 201
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.92 E-value=0.00036 Score=58.03 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+|+++.|.|++|+|||||+.-++..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999999977643
No 202
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.91 E-value=0.0001 Score=63.02 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999997764
No 203
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.91 E-value=4.6e-05 Score=66.50 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999986653
No 204
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.91 E-value=7.1e-05 Score=69.63 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=33.4
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~ 258 (357)
++++++++|.-++-... .....+.+.|+++++ .+.+||+++|.-..
T Consensus 189 ~~P~lLiLDEPt~gLD~---------~~r~~l~~~l~~l~~-~g~tilisSH~l~e 234 (340)
T PRK13536 189 NDPQLLILDEPTTGLDP---------HARHLIWERLRSLLA-RGKTILLTTHFMEE 234 (340)
T ss_pred cCCCEEEEECCCCCCCH---------HHHHHHHHHHHHHHh-CCCEEEEECCCHHH
Confidence 57999999987765432 344456777778766 49999999986543
No 205
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.91 E-value=3.5e-05 Score=71.40 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=34.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.++++++.|.-++-... ..-.++++.|+++.++++.++|+++|--.
T Consensus 178 ~~P~llilDEPts~LD~---------~~~~~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 178 LEPKLIICDEPVSALDV---------SIQAQVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred cCCCEEEEeCCCccCCH---------HHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 47899999987765432 33446778888888888999999988543
No 206
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=6.8e-05 Score=66.14 Aligned_cols=44 Identities=7% Similarity=-0.000 Sum_probs=32.7
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..+.-... .....+...|+.++.++++++|+++|-
T Consensus 146 ~~p~llllDEPt~gLD~---------~~~~~l~~~l~~~~~~~~~tili~tH~ 189 (235)
T cd03299 146 VNPKILLLDEPFSALDV---------RTKEKLREELKKIRKEFGVTVLHVTHD 189 (235)
T ss_pred cCCCEEEECCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 47899999987754432 344457777888888779999999874
No 207
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.91 E-value=6.1e-05 Score=63.36 Aligned_cols=40 Identities=30% Similarity=0.399 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
..+.-+.|.|+||+|||.||..++..++.. +.+|+|++..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~------g~~v~f~~~~ 84 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK------GYSVLFITAS 84 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT------T--EEEEEHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC------CcceeEeecC
Confidence 346679999999999999999999888742 5889999763
No 208
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.91 E-value=9.1e-05 Score=65.33 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
..+.+.|+||+|||.|+..++...... +.+|+|++.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~------g~~v~~it~ 135 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR------GKSVLIITV 135 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc------CCeEEEEEH
Confidence 368999999999999999999887642 478999965
No 209
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.90 E-value=7.4e-05 Score=64.67 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999997774
No 210
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.90 E-value=0.00013 Score=66.92 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=27.2
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
.|+.+-- =+.+|+++.|.|++|+|||||+..++.
T Consensus 22 ~l~~vsl-~i~~Ge~v~iiG~nGsGKSTLl~~L~G 55 (305)
T PRK13651 22 ALDNVSV-EINQGEFIAIIGQTGSGKTTFIEHLNA 55 (305)
T ss_pred ceeeeEE-EEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4544322 288999999999999999999997774
No 211
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.90 E-value=0.00016 Score=64.65 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=32.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+...|++++++.+.+||+++|-.
T Consensus 157 ~~p~lllLDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 157 GPPRWLLLDEPTSALDL---------AHQHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred CCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 47899999987765432 3344567778888866789999998853
No 212
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.90 E-value=0.00011 Score=63.85 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999997774
No 213
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.90 E-value=3.6e-05 Score=67.65 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=32.6
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..+.-... .....+.+.|++++++.+.+||+++|-.
T Consensus 148 ~~p~illlDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tii~~sH~~ 192 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQP---------SIIKDIGRVIRRLRAEGGMAILLVEQYL 192 (230)
T ss_pred cCCCEEEecCCcccCCH---------HHHHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 47899999987654422 3344567778888877789999998753
No 214
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.90 E-value=8.5e-05 Score=68.13 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=32.7
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-++-... .....+.+.|+++++ .+.+||+++|-..
T Consensus 152 ~~p~lllLDEPt~gLD~---------~~~~~l~~~l~~~~~-~g~til~~sH~~~ 196 (303)
T TIGR01288 152 NDPQLLILDEPTTGLDP---------HARHLIWERLRSLLA-RGKTILLTTHFME 196 (303)
T ss_pred cCCCEEEEeCCCcCCCH---------HHHHHHHHHHHHHHh-CCCEEEEECCCHH
Confidence 47999999987755432 344456777888766 4899999998654
No 215
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.89 E-value=7.2e-05 Score=66.17 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+|+++.|.|++|+|||||+.-++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999999977753
No 216
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=0.0001 Score=66.46 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 78999999999999999999997664
No 217
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=0.00011 Score=66.97 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 29 i~~Ge~v~i~G~nGsGKSTLl~~l~G 54 (288)
T PRK13643 29 VKKGSYTALIGHTGSGKSTLLQHLNG 54 (288)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhc
Confidence 88999999999999999999997774
No 218
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.89 E-value=0.00015 Score=63.72 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999997774
No 219
>PF05729 NACHT: NACHT domain
Probab=97.88 E-value=0.0001 Score=60.77 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALP 129 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~ 129 (357)
++.|.|+||+|||+++..++......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc
Confidence 68999999999999999999888754
No 220
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.88 E-value=7.1e-05 Score=70.49 Aligned_cols=46 Identities=7% Similarity=-0.039 Sum_probs=33.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-.+-... ..-..+...|+++.++.+.++|+++|-..
T Consensus 150 ~~P~lLLLDEPts~LD~---------~~~~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 150 AEPSVFLLDEPLSNLDA---------ALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 47999999987654422 33445677788888888999999988654
No 221
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.88 E-value=9.2e-05 Score=63.58 Aligned_cols=137 Identities=16% Similarity=0.148 Sum_probs=68.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC--CchHHHHHHHhccCchhhc-cc-chHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST--FTSRRMIEMGASSFPEIFH-SK-GMAQEM 174 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~~~-~~-~~~~~~ 174 (357)
+.+|+++.|.|++|+|||||+.-++.....++. ..-++++.+.- .+........-...++... .. ......
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~ 97 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT-----EGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADF 97 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-----ccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHH
Confidence 789999999999999999999987754211212 23455655421 1111111100000000000 00 000111
Q ss_pred hcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecc
Q 035774 175 AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQ 254 (357)
Q Consensus 175 ~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q 254 (357)
... +....+..+.. .+.-.+.. -.+++++++|.-+.-... .....+...|+++++ .+.++|+++|
T Consensus 98 l~~--~~~~LS~G~~q-rv~laral--~~~p~illlDEPt~~LD~---------~~~~~l~~~L~~~~~-~~~tiii~sh 162 (200)
T cd03217 98 LRY--VNEGFSGGEKK-RNEILQLL--LLEPDLAILDEPDSGLDI---------DALRLVAEVINKLRE-EGKSVLIITH 162 (200)
T ss_pred Hhh--ccccCCHHHHH-HHHHHHHH--hcCCCEEEEeCCCccCCH---------HHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 100 01122222221 11111222 247899999987654422 344556777887765 4889999887
Q ss_pred c
Q 035774 255 V 255 (357)
Q Consensus 255 ~ 255 (357)
-
T Consensus 163 ~ 163 (200)
T cd03217 163 Y 163 (200)
T ss_pred C
Confidence 5
No 222
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=0.00031 Score=62.77 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=32.4
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-++-... .....+...|++++++.+.+||+++|-
T Consensus 145 ~~p~lllLDEPt~~LD~---------~~~~~l~~~L~~~~~~~g~tviivsH~ 188 (255)
T PRK11248 145 ANPQLLLLDEPFGALDA---------FTREQMQTLLLKLWQETGKQVLLITHD 188 (255)
T ss_pred cCCCEEEEeCCCccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47899999987654432 344557777888877679999999875
No 223
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.88 E-value=0.00027 Score=60.64 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999999997664
No 224
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.88 E-value=7.3e-05 Score=69.93 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=34.3
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~ 258 (357)
.+++++++|.-.+-.. ...-..+...|+++.++.++|+|+++|-...
T Consensus 151 ~~P~llLLDEP~s~LD---------~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~e 197 (353)
T TIGR03265 151 TSPGLLLLDEPLSALD---------ARVREHLRTEIRQLQRRLGVTTIMVTHDQEE 197 (353)
T ss_pred cCCCEEEEcCCcccCC---------HHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 4689999997664432 2334456778888889999999999986543
No 225
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=7e-05 Score=67.70 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 25 AEKGEMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999997764
No 226
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.87 E-value=6.2e-05 Score=69.55 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=37.2
Q ss_pred hcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 202 QNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 202 ~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
..+++++++|-+.++... .....+++.+.++|++.++|++++.|-
T Consensus 523 aerpn~~~iDEF~AhLD~---------~TA~rVArkiselaRe~giTlivvThr 567 (593)
T COG2401 523 AERPNVLLIDEFAAHLDE---------LTAVRVARKISELAREAGITLIVVTHR 567 (593)
T ss_pred hcCCCcEEhhhhhhhcCH---------HHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 357899999999888643 455668999999999999999998764
No 227
>PRK08181 transposase; Validated
Probab=97.87 E-value=0.00013 Score=65.23 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=33.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
+..+.-+.|+||||+|||.|+..++..++.. +.+|+|++.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~------g~~v~f~~~ 142 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIEN------GWRVLFTRT 142 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHHc------CCceeeeeH
Confidence 4467779999999999999999999877642 478999976
No 228
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.87 E-value=8.9e-05 Score=68.38 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=32.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+.-+.|+|++|+|||.|+..+|..++.. +..|+|++...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~------g~~V~y~t~~~ 221 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR------GKSVIYRTADE 221 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC------CCeEEEEEHHH
Confidence 4669999999999999999999888742 57899998743
No 229
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.00022 Score=68.95 Aligned_cols=44 Identities=32% Similarity=0.382 Sum_probs=35.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+..|.++.|.|++|+||||++..++...+.. +.+.+|.+++++.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~----~~gkkVaLIdtDt 390 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQ----HAPRDVALVTTDT 390 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHh----cCCCceEEEeccc
Confidence 5678999999999999999999999877642 1136788998863
No 230
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=5.8e-05 Score=67.39 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=32.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..+.-... .....+.+.|++++++.+++||+++|-
T Consensus 170 ~~p~llllDEPt~~LD~---------~~~~~l~~~L~~~~~~~~~tii~~sH~ 213 (255)
T PRK11300 170 TQPEILMLDEPAAGLNP---------KETKELDELIAELRNEHNVTVLLIEHD 213 (255)
T ss_pred cCCCEEEEcCCccCCCH---------HHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 47899999987754432 344557778888888779999999875
No 231
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.87 E-value=0.00014 Score=64.90 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=34.1
Q ss_pred chhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 88 LKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 88 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+..+|++-- -|+.|+++.+.||+|+||||++.-|| .+..++ ..-+++..+
T Consensus 15 ~~a~~di~l-~i~~Ge~vaLlGpSGaGKsTlLRiIA--GLe~p~-----~G~I~~~~~ 64 (345)
T COG1118 15 FGALDDISL-DIKSGELVALLGPSGAGKSTLLRIIA--GLETPD-----AGRIRLNGR 64 (345)
T ss_pred cccccccee-eecCCcEEEEECCCCCcHHHHHHHHh--CcCCCC-----CceEEECCE
Confidence 344554322 28899999999999999999999776 343333 335555554
No 232
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.86 E-value=0.00019 Score=62.88 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=34.6
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
|+++++++|..+-=..- ..-..+.+.|+....++++||++++|.-.
T Consensus 173 h~p~VLfLDEpTvgLDV---------~aq~~ir~Flke~n~~~~aTVllTTH~~~ 218 (325)
T COG4586 173 HPPKVLFLDEPTVGLDV---------NAQANIREFLKEYNEERQATVLLTTHIFD 218 (325)
T ss_pred CCCcEEEecCCccCcch---------hHHHHHHHHHHHHHHhhCceEEEEecchh
Confidence 68999999987743221 22234667899999999999999999744
No 233
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.86 E-value=0.00024 Score=63.96 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=32.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-+.-... .....+.+.|++++++.+.+||+++|-
T Consensus 160 ~~p~lllLDEPt~~LD~---------~~~~~l~~~l~~~~~~~g~tiiivsH~ 203 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDP---------ITMGVLVKLISELNSALGVTCVVVSHD 203 (269)
T ss_pred cCCCEEEEcCCCccCCH---------HHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 46899999977654422 445567778888888778999999885
No 234
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.86 E-value=0.00024 Score=58.48 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=29.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
-..|+++-|.|.+|||||||+. |.|.+..+. ...+++..|+
T Consensus 29 A~~GdVisIIGsSGSGKSTfLR--CiN~LE~P~-----~G~I~v~gee 69 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLR--CINFLEKPS-----AGSIRVNGEE 69 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHH--HHHhhcCCC-----CceEEECCeE
Confidence 4679999999999999999987 455554433 3456666553
No 235
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.86 E-value=0.00012 Score=62.87 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+..|+++.|.||+|+|||||+..++...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4557999999999999999999998655
No 236
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.86 E-value=0.00024 Score=61.90 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=62.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEe
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL 181 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 181 (357)
...+.|+|++|+|||.|+..++..+... ..+.+|+|++.+. |... +.. ....
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~----~~~~~v~y~~~~~-f~~~----~~~--------------~~~~----- 85 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQ----HPGKRVVYLSAEE-FIRE----FAD--------------ALRD----- 85 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHH----CTTS-EEEEEHHH-HHHH----HHH--------------HHHT-----
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhc----cccccceeecHHH-HHHH----HHH--------------HHHc-----
Confidence 3457899999999999999888776532 1257899998753 1111 110 0101
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 182 QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 182 ~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
....+ +.+.+ ...++++||.+..+... .....++...+.. ..+.|..+|+++....
T Consensus 86 --~~~~~---~~~~~------~~~DlL~iDDi~~l~~~--------~~~q~~lf~l~n~-~~~~~k~li~ts~~~P 141 (219)
T PF00308_consen 86 --GEIEE---FKDRL------RSADLLIIDDIQFLAGK--------QRTQEELFHLFNR-LIESGKQLILTSDRPP 141 (219)
T ss_dssp --TSHHH---HHHHH------CTSSEEEEETGGGGTTH--------HHHHHHHHHHHHH-HHHTTSEEEEEESS-T
T ss_pred --ccchh---hhhhh------hcCCEEEEecchhhcCc--------hHHHHHHHHHHHH-HHhhCCeEEEEeCCCC
Confidence 11112 22221 36899999999887421 1122334444444 4456888888876543
No 237
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.86 E-value=0.00029 Score=57.12 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 88999999999999999999997764
No 238
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=0.00013 Score=65.56 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=33.0
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-... .....+...|+.++++.+.+||+++|-
T Consensus 164 ~~p~lllLDEPt~~LD~---------~~~~~~~~~l~~l~~~~~~tiii~sH~ 207 (265)
T PRK10575 164 QDSRCLLLDEPTSALDI---------AHQVDVLALVHRLSQERGLTVIAVLHD 207 (265)
T ss_pred cCCCEEEEcCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47899999987654422 344567778888888779999999875
No 239
>PRK10908 cell division protein FtsE; Provisional
Probab=97.86 E-value=0.00018 Score=62.80 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999998773
No 240
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.86 E-value=6.7e-05 Score=70.25 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=34.0
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-.+-... .....+...|++++++.+.++|+++|-..
T Consensus 145 ~~p~llLLDEPts~LD~---------~~~~~l~~~L~~l~~~~g~tii~vTHd~~ 190 (352)
T PRK11144 145 TAPELLLMDEPLASLDL---------PRKRELLPYLERLAREINIPILYVSHSLD 190 (352)
T ss_pred cCCCEEEEcCCcccCCH---------HHHHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 47899999977654322 33445777888888888999999988654
No 241
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.00011 Score=67.41 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=31.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+..|+++.|.||+|||||||+.-+| .+... ..+-++|+.+
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IA--GLe~~-----~~G~I~i~g~ 65 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIA--GLEEP-----TSGEILIDGR 65 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh--CCCCC-----CCceEEECCE
Confidence 7899999999999999999999777 33322 3557777765
No 242
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.85 E-value=9.9e-05 Score=69.52 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=33.7
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-.+-.. ...-..+...|+++.++.++++|+++|-..
T Consensus 161 ~~P~llLLDEP~s~LD---------~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ 206 (375)
T PRK09452 161 NKPKVLLLDESLSALD---------YKLRKQMQNELKALQRKLGITFVFVTHDQE 206 (375)
T ss_pred cCCCEEEEeCCCCcCC---------HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3689999997654332 233345677888999999999999998654
No 243
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.85 E-value=0.00012 Score=63.98 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999997774
No 244
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.85 E-value=0.00014 Score=72.95 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+.+.|.|++|+|||||+.-++...
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999999999777543
No 245
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=9.8e-05 Score=66.70 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (274)
T PRK13644 25 IKKGEYIGIIGKNGSGKSTLALHLNG 50 (274)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999999997774
No 246
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.84 E-value=0.00014 Score=68.98 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=25.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|++++.-++|+||||+|||+++..+|...
T Consensus 175 Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 175 GIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 58888889999999999999999888654
No 247
>PRK08727 hypothetical protein; Validated
Probab=97.84 E-value=0.00019 Score=63.24 Aligned_cols=38 Identities=34% Similarity=0.467 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
...+.|+|++|+|||.|+..++..+..+ +.+++|++.+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~------~~~~~y~~~~ 78 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQA------GRSSAYLPLQ 78 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc------CCcEEEEeHH
Confidence 3569999999999999999988876532 4789999753
No 248
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.84 E-value=0.00017 Score=65.04 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 27 I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 8899999999999999999999877554
No 249
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=9.5e-05 Score=69.72 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=33.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~ 258 (357)
.+++++++|.-.+-... ..-..+...|+++.++.++++|+++|-...
T Consensus 166 ~~P~lLLLDEP~s~LD~---------~~r~~l~~~l~~l~~~~g~tii~vTHd~~e 212 (377)
T PRK11607 166 KRPKLLLLDEPMGALDK---------KLRDRMQLEVVDILERVGVTCVMVTHDQEE 212 (377)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 47899999976544321 233345667888888889999999986543
No 250
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.84 E-value=0.00014 Score=65.46 Aligned_cols=45 Identities=22% Similarity=0.129 Sum_probs=33.6
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+...|++++++++.+||+++|-.
T Consensus 166 ~~p~lllLDEPt~~LD~---------~~~~~l~~~l~~~~~~~g~tviivsH~~ 210 (267)
T PRK15112 166 LRPKVIIADEALASLDM---------SMRSQLINLMLELQEKQGISYIYVTQHL 210 (267)
T ss_pred hCCCEEEEcCCcccCCH---------HHHHHHHHHHHHHHHHcCcEEEEEeCCH
Confidence 47899999987755432 3344577788888888899999998753
No 251
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=0.00013 Score=67.38 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=27.5
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
.|+.+-- -+++|+++.|.|++|+|||||+.-++.
T Consensus 41 ~L~~vsl-~i~~Ge~~~I~G~nGsGKSTLl~~L~G 74 (320)
T PRK13631 41 ALNNISY-TFEKNKIYFIIGNSGSGKSTLVTHFNG 74 (320)
T ss_pred ceeeeEE-EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4555422 389999999999999999999997774
No 252
>PRK06526 transposase; Provisional
Probab=97.84 E-value=0.00011 Score=65.34 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=32.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
+..+.-+.|+||||+|||.++..++..++.. +.+|+|++.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~------g~~v~f~t~ 134 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQA------GHRVLFATA 134 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHC------CCchhhhhH
Confidence 4556789999999999999999999887742 477887654
No 253
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.83 E-value=7.5e-05 Score=64.47 Aligned_cols=27 Identities=33% Similarity=0.477 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 889999999999999999999977653
No 254
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.83 E-value=8.9e-05 Score=69.52 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=33.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHc-CCeEEEecccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFS-RIPIVVTNQVRPQ 258 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~-~~~vv~~~q~~~~ 258 (357)
.+++++++|.-.+-.. ...-.++...|+++.+++ ++++|+++|-...
T Consensus 154 ~~P~llLLDEP~s~LD---------~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e 201 (362)
T TIGR03258 154 IEPDVLLLDEPLSALD---------ANIRANMREEIAALHEELPELTILCVTHDQDD 201 (362)
T ss_pred cCCCEEEEcCccccCC---------HHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 4799999997664432 233445677788888887 8999999886543
No 255
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.82 E-value=0.00026 Score=67.78 Aligned_cols=41 Identities=39% Similarity=0.430 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc-cccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAA-LPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~-~~~~~gg~~~~vl~i~~e~ 146 (357)
.|.++.|.||+|+||||++..+|...+ .. .+.+|.+|+++.
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~-----~g~~V~li~~D~ 261 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLY-----GKKKVALITLDT 261 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEECCc
Confidence 367999999999999999999998876 31 147899999864
No 256
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.82 E-value=0.0001 Score=70.73 Aligned_cols=51 Identities=37% Similarity=0.473 Sum_probs=37.6
Q ss_pred CchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 87 RLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 87 G~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
|++.||.+--- +.+|+++.+.|++|+|||||+.-++--. ++ ...-++++.+
T Consensus 20 gV~AL~~v~l~-v~~GEV~aL~GeNGAGKSTLmKiLsGv~--~p-----~~G~I~~~G~ 70 (500)
T COG1129 20 GVKALDGVSLT-VRPGEVHALLGENGAGKSTLMKILSGVY--PP-----DSGEILIDGK 70 (500)
T ss_pred CceeeccceeE-EeCceEEEEecCCCCCHHHHHHHHhCcc--cC-----CCceEEECCE
Confidence 56677776433 8999999999999999999999666433 32 2446777754
No 257
>PRK08116 hypothetical protein; Validated
Probab=97.82 E-value=0.00039 Score=62.48 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
+.-+.|.|+||+|||.|+..++...... +.+|+|++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~------~~~v~~~~~ 150 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK------GVPVIFVNF 150 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEEEH
Confidence 3458999999999999999999887642 478999975
No 258
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.82 E-value=6.7e-05 Score=70.34 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=34.4
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-.+-... .....+...|++++++.+.+||+++|-..
T Consensus 148 ~~p~lllLDEPts~LD~---------~~~~~l~~~L~~l~~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDD---------PRKYEILPYLERLHAEFGIPILYVSHSLQ 193 (354)
T ss_pred cCCCEEEEcCCCcCCCH---------HHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 46899999987655432 34445778888888888999999988654
No 259
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00035 Score=65.22 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=55.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEe
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL 181 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 181 (357)
+..+.|.|++|+||||++..+|..... .+.+|.+++++. +....+.+... +.+. .++-++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~------~GkkVglI~aDt-~RiaAvEQLk~-----------yae~--lgipv~ 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHG------KKKTVGFITTDH-SRIGTVQQLQD-----------YVKT--IGFEVI 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEEecCC-cchHHHHHHHH-----------Hhhh--cCCcEE
Confidence 468999999999999999999987653 247899999864 22212222111 0011 123233
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCeeEEEEecccccc
Q 035774 182 QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217 (357)
Q Consensus 182 ~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~ 217 (357)
...+..++...+..+ ....+.++|+||..+...
T Consensus 301 v~~d~~~L~~aL~~l---k~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 301 AVRDEAAMTRALTYF---KEEARVDYILIDTAGKNY 333 (436)
T ss_pred ecCCHHHHHHHHHHH---HhccCCCEEEEeCccccC
Confidence 234555554433332 212368999999877543
No 260
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.82 E-value=0.00026 Score=65.67 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=35.1
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-++-... ....++++.|+++.+++++++|+++|--.
T Consensus 175 ~~P~llilDEPts~LD~---------~~~~~i~~lL~~l~~~~g~tii~itHdl~ 220 (330)
T PRK15093 175 NQPRLLIADEPTNAMEP---------TTQAQIFRLLTRLNQNNNTTILLISHDLQ 220 (330)
T ss_pred CCCCEEEEeCCCCcCCH---------HHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 46899999987765432 34456788888888888999999998643
No 261
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=0.00022 Score=63.16 Aligned_cols=44 Identities=14% Similarity=-0.007 Sum_probs=32.4
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..+.-... .....+.+.|++++++.+.+||+++|-
T Consensus 152 ~~p~llllDEPt~~LD~---------~~~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 152 ADPPLLLMDEPFGALDP---------ITRDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred cCCCEEEecCCcccCCH---------HHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 47899999987654322 334457778888888778999999875
No 262
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=0.00016 Score=65.62 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~i~G 55 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQLLNG 55 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999997764
No 263
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.81 E-value=0.00016 Score=72.58 Aligned_cols=28 Identities=39% Similarity=0.565 Sum_probs=25.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+.+.|.|++|+|||||+.-++...
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999999777644
No 264
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.81 E-value=0.00011 Score=64.02 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 889999999999999999999977743
No 265
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=0.00015 Score=65.92 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~G 55 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNA 55 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999999997774
No 266
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.80 E-value=0.00016 Score=62.02 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAG 48 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999997764
No 267
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.80 E-value=0.00014 Score=63.20 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=23.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLS 123 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia 123 (357)
+.+|+++.|.||+|||||||..-+|
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 8899999999999999999998665
No 268
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.80 E-value=0.00016 Score=62.96 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999997774
No 269
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.79 E-value=0.00018 Score=65.19 Aligned_cols=43 Identities=37% Similarity=0.471 Sum_probs=35.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
..+.++.|+||+|+||||++..++...... .| +.+|.+|+++.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~--~g--~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLE--HG--NKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHH--cC--CCeEEEEECCc
Confidence 467899999999999999999999887641 11 36899999874
No 270
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.79 E-value=0.0007 Score=60.43 Aligned_cols=44 Identities=7% Similarity=0.124 Sum_probs=33.1
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-... .....+...|++++++.+.+||+++|-
T Consensus 157 ~~p~lLlLDEPt~~LD~---------~~~~~l~~~L~~~~~~~g~til~~sH~ 200 (254)
T PRK10418 157 CEAPFIIADEPTTDLDV---------VAQARILDLLESIVQKRALGMLLVTHD 200 (254)
T ss_pred cCCCEEEEeCCCcccCH---------HHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 47899999987755432 334457778888888889999999875
No 271
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.79 E-value=0.00038 Score=66.60 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=44.3
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
...+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++.... + ...++.+..|..
T Consensus 139 ~~~l~tg~~vid~l~~--i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-~------~~gvI~~~Gerg 196 (438)
T PRK07721 139 REPMEVGVRAIDSLLT--VGKGQRVGIFAGSGVGKSTLMGMIARNTS-A------DLNVIALIGERG 196 (438)
T ss_pred ccccccchhhhheeee--ecCCcEEEEECCCCCCHHHHHHHHhcccC-C------CeEEEEEEecCC
Confidence 3478999999999965 99999999999999999999876664332 1 244566655543
No 272
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.78 E-value=0.00023 Score=68.79 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=36.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++|.|.-+..... ..-.+++..|+.+.+++|+++++++|.
T Consensus 171 ~~P~LLIaDEPTTaLDv---------t~q~qIL~llk~l~~e~g~a~l~ITHD 214 (539)
T COG1123 171 LKPKLLIADEPTTALDV---------TTQAQILDLLKDLQRELGMAVLFITHD 214 (539)
T ss_pred CCCCEEEECCCccccCH---------HHHHHHHHHHHHHHHHcCcEEEEEcCC
Confidence 47999999987765432 455678999999999999999999995
No 273
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.78 E-value=0.00015 Score=62.96 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999987663
No 274
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.78 E-value=0.00015 Score=72.74 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=28.2
Q ss_pred cCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 96 CGGVPFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 96 ~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
.|=+.+|+++.|.||+|+|||||..-++....
T Consensus 50 sg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~ 81 (613)
T KOG0061|consen 50 SGTAKPGELLAIMGPSGSGKTTLLNALAGRLN 81 (613)
T ss_pred EEEEecCeEEEEECCCCCCHHHHHHHHhcccc
Confidence 35589999999999999999999998887664
No 275
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.78 E-value=0.00015 Score=74.21 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+.+.|.|++|+|||||+.-++..
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999999877643
No 276
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.77 E-value=0.00014 Score=65.23 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=33.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..+.-... .....+.+.|++++++.+.+||+++|-.
T Consensus 169 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~~g~tvii~tH~~ 213 (262)
T PRK09984 169 QQAKVILADEPIASLDP---------ESARIVMDTLRDINQNDGITVVVTLHQV 213 (262)
T ss_pred cCCCEEEecCccccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46899999987755432 4455678888888887789999998753
No 277
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.77 E-value=0.00022 Score=62.48 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=32.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-... .....+...|++++++.+.+||+++|-
T Consensus 162 ~~p~lllLDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 162 LNPKLLIADEPTSALDV---------SVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred cCCCEEEecCCCCCCCH---------HHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999987754422 334457788888888778999999885
No 278
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=0.0002 Score=63.19 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+..++.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 88999999999999999999997763
No 279
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.77 E-value=0.00014 Score=74.37 Aligned_cols=40 Identities=25% Similarity=0.504 Sum_probs=30.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|+.+.|.|++|||||||+.-++.... + ..+-++++..
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p-----~~G~I~idg~ 515 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFET--P-----ESGSVFYDGQ 515 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC--C-----CCCEEEECCE
Confidence 88999999999999999999997775432 2 2345666653
No 280
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.76 E-value=0.0002 Score=62.96 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=33.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+.+.|++++++.+.+||+++|-.
T Consensus 142 ~~p~vllLDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tiii~sH~~ 186 (230)
T TIGR02770 142 LEPPFLIADEPTTDLDV---------VNQARVLKLLRELRQLFGTGILLITHDL 186 (230)
T ss_pred cCCCEEEEcCCccccCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 47899999987754422 3445577788888887899999998853
No 281
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.76 E-value=0.0001 Score=66.24 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=33.3
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+.+.|++++++.+.+||+++|-.
T Consensus 167 ~~p~illLDEPt~~LD~---------~~~~~l~~~l~~~~~~~g~tiiivsH~~ 211 (265)
T TIGR02769 167 VKPKLIVLDEAVSNLDM---------VLQAVILELLRKLQQAFGTAYLFITHDL 211 (265)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 47899999987654422 3344577888888888899999998853
No 282
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.76 E-value=0.00025 Score=61.04 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 889999999999999999999987653
No 283
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.76 E-value=0.00037 Score=60.91 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~G 56 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLKSLYA 56 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999997764
No 284
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.76 E-value=0.00019 Score=72.20 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+.+.|.|++|+|||||+.-++..
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl 390 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGY 390 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999999977653
No 285
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.75 E-value=0.00027 Score=62.83 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAG 44 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 78999999999999999999997764
No 286
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.75 E-value=0.00022 Score=64.11 Aligned_cols=45 Identities=7% Similarity=0.044 Sum_probs=32.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..+.-... .....+.+.|++++++.+.+||+++|-.
T Consensus 160 ~~p~llllDEPt~gLD~---------~~~~~l~~~L~~l~~~~~~tiii~tH~~ 204 (265)
T PRK10253 160 QETAIMLLDEPTTWLDI---------SHQIDLLELLSELNREKGYTLAAVLHDL 204 (265)
T ss_pred cCCCEEEEeCccccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 47899999987654432 3444577788888877789999998753
No 287
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.75 E-value=0.00023 Score=62.06 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999999997764
No 288
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.75 E-value=0.00013 Score=69.18 Aligned_cols=26 Identities=38% Similarity=0.554 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.||+|+|||||+..++.
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaG 51 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAING 51 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhc
Confidence 78999999999999999999997764
No 289
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=97.75 E-value=0.00014 Score=64.76 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=46.0
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||+..+|-++. +-+|+=..|.|++|+|||+|+++.+.+... .+..++|.-.-+
T Consensus 50 ~e~L~TGI~~ID~l~p--igrGQr~~Ifg~~g~GKt~L~l~~i~~~~~------~~v~~V~~~iGe 107 (274)
T cd01132 50 NEPLQTGIKAIDAMIP--IGRGQRELIIGDRQTGKTAIAIDTIINQKG------KKVYCIYVAIGQ 107 (274)
T ss_pred ccccccCCEEeeccCC--cccCCEEEeeCCCCCCccHHHHHHHHHhcC------CCeEEEEEeccc
Confidence 5689999999999987 889999999999999999998766655432 145567776544
No 290
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00032 Score=63.75 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=66.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
||.|-.=++++||||+|||.||...|... .+-||-.-+ ++-+.+...
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-----------~AtFIrvvg---SElVqKYiG------------------- 227 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQT-----------DATFIRVVG---SELVQKYIG------------------- 227 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhcc-----------CceEEEecc---HHHHHHHhc-------------------
Confidence 58888889999999999999999776543 344554332 122211110
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHH----HHHHHHHHHHHHHHcCCeEEEe
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHP----LSWHISLITSLAEFSRIPIVVT 252 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~----~~~i~~~Lk~la~~~~~~vv~~ 252 (357)
+=..++..+-.+.+++.+.+|+||.|-++-...++.......+ +-+++..|..+-..-|+-||+.
T Consensus 228 ----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~A 296 (406)
T COG1222 228 ----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMA 296 (406)
T ss_pred ----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEe
Confidence 1112334444555678899999999999866544433322233 3334444444445556777654
No 291
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.74 E-value=0.00016 Score=64.79 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
|++|+|-||||||++|.++...... .+..|.+++.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~------~~~~v~~i~~ 37 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE------KGKEVVIISD 37 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH------TT--EEEE-T
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh------cCCEEEEEcc
Confidence 7899999999999999999987653 1477888874
No 292
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.74 E-value=0.00016 Score=71.65 Aligned_cols=27 Identities=33% Similarity=0.666 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+.+.|.|++|+|||||+.-++..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999999876643
No 293
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.74 E-value=0.00013 Score=65.71 Aligned_cols=45 Identities=16% Similarity=0.058 Sum_probs=33.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..+.-... .....+...|+.++++++.++|+++|-.
T Consensus 168 ~~p~lllLDEPt~~LD~---------~~~~~~~~~l~~~~~~~~~tiiivsH~~ 212 (268)
T PRK10419 168 VEPKLLILDEAVSNLDL---------VLQAGVIRLLKKLQQQFGTACLFITHDL 212 (268)
T ss_pred cCCCEEEEeCCCcccCH---------HHHHHHHHHHHHHHHHcCcEEEEEECCH
Confidence 47899999987654422 3344577788888888899999998753
No 294
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.74 E-value=0.00024 Score=61.72 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 88999999999999999999998774
No 295
>PRK06921 hypothetical protein; Provisional
Probab=97.72 E-value=0.00045 Score=61.95 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.+.-+.|.|+||+|||.|+..++..+... . +..|+|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~--~---g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK--K---GVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh--c---CceEEEEEH
Confidence 36678999999999999999998877631 1 478999986
No 296
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.72 E-value=0.00015 Score=63.40 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999997764
No 297
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=0.00063 Score=60.17 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999999977753
No 298
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.72 E-value=0.00012 Score=63.97 Aligned_cols=150 Identities=20% Similarity=0.162 Sum_probs=71.3
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccc
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKG 169 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~ 169 (357)
.|...+.+| ++..+.|+||.|+|||+|+.+++...-. .+..++|++.-.......+....... ........
T Consensus 10 ~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~------~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 80 (234)
T PF01637_consen 10 KLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKE------KGYKVVYIDFLEESNESSLRSFIEET-SLADELSE 80 (234)
T ss_dssp HHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--------EECCCHHCCTTBSHHHHHHHHHHHH-HHHCHCHH
T ss_pred HHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhh------cCCcEEEEecccchhhhHHHHHHHHH-HHHHHHHH
Confidence 344444432 4689999999999999999999876631 12467787765443333333331100 00000000
Q ss_pred hHHHhhcC--e-EEeCCCCHHHHHHHHHHHHHHhhhc-CeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHc
Q 035774 170 MAQEMAGR--I-LVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFS 245 (357)
Q Consensus 170 ~~~~~~~~--i-~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~ 245 (357)
........ + .+.. .........+..+...+... .--+||||.+..+. .... .....+..+...+.......
T Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~-~~~~---~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 81 ALGISIPSITLEKISK-DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA-IASE---EDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp HHHHHCCTSTTEEEEC-TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG-BCTT---TTHHHHHHHHHHHHH----T
T ss_pred HHhhhcccccchhhhh-cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh-hccc---chHHHHHHHHHHHhhccccC
Confidence 00111111 1 1111 11222223333333333333 23788999999987 2111 13355566666666666667
Q ss_pred CCeEEEec
Q 035774 246 RIPIVVTN 253 (357)
Q Consensus 246 ~~~vv~~~ 253 (357)
++.+|++.
T Consensus 156 ~~~~v~~~ 163 (234)
T PF01637_consen 156 NVSIVITG 163 (234)
T ss_dssp TEEEEEEE
T ss_pred CceEEEEC
Confidence 77777664
No 299
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.71 E-value=0.00036 Score=62.10 Aligned_cols=26 Identities=38% Similarity=0.666 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999999997764
No 300
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.71 E-value=0.00025 Score=71.20 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+.+.|.|++|+|||||+.-++..
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 779999999999999999999866643
No 301
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.71 E-value=0.00037 Score=61.72 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=31.3
Q ss_pred hhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 89 ~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
..+|-++. +.+|+-+.|.|++|+|||+|+..++.+..
T Consensus 5 ~~id~~~~--i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 5 RVVDLFAP--IGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred hheeeecc--cCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45777765 77999999999999999999988887654
No 302
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.71 E-value=0.00023 Score=69.19 Aligned_cols=31 Identities=26% Similarity=0.203 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~ 128 (357)
|+++..-++|+||||+|||+++..++.....
T Consensus 212 gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 212 DLKPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred cCCCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 4666667999999999999999999877643
No 303
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.70 E-value=0.0013 Score=59.10 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=83.0
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC--CCchHHHHHHHhcc
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES--TFTSRRMIEMGASS 160 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~--~~~~~rl~~~~~~~ 160 (357)
+..-|....+- -++.|++.+|.|-+|||||||...+- -+..+. ..-++++.++ ..+...++++....
T Consensus 39 g~vvGv~~~sl----~v~~GeIfViMGLSGSGKSTLvR~~N--rLiept-----~G~ilv~g~di~~~~~~~Lr~~Rr~~ 107 (386)
T COG4175 39 GLVVGVNDASL----DVEEGEIFVIMGLSGSGKSTLVRLLN--RLIEPT-----RGEILVDGKDIAKLSAAELRELRRKK 107 (386)
T ss_pred CcEEeecccee----eecCCeEEEEEecCCCCHHHHHHHHh--ccCCCC-----CceEEECCcchhcCCHHHHHHHHhhh
Confidence 45556554432 27889999999999999999998543 333333 3466777764 23445555554444
Q ss_pred CchhhcccchH--HHhhcCeEE---eCCCCHHHHHHHH-HHH--------------------------HHHhhhcCeeEE
Q 035774 161 FPEIFHSKGMA--QEMAGRILV---LQPTSLSEFTESL-EKI--------------------------KVSLLQNQVKLL 208 (357)
Q Consensus 161 ~~~~~~~~~~~--~~~~~~i~~---~~~~~~~~~~~~l-~~l--------------------------~~~~~~~~~~lv 208 (357)
....|+...+. ..+++|+.| +..-+..+-.+.. +.+ .+.+ ..+++++
T Consensus 108 ~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAl-a~~~~Il 186 (386)
T COG4175 108 ISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARAL-ANDPDIL 186 (386)
T ss_pred hhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHH-ccCCCEE
Confidence 43333322111 122333322 1111111111110 000 0011 2368888
Q ss_pred EEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 209 VIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 209 vIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
+.|..-+-..+ -.-.++-..|.+|-++++-|||+++|--.
T Consensus 187 LMDEaFSALDP---------LIR~~mQdeLl~Lq~~l~KTIvFitHDLd 226 (386)
T COG4175 187 LMDEAFSALDP---------LIRTEMQDELLELQAKLKKTIVFITHDLD 226 (386)
T ss_pred EecCchhhcCh---------HHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 88865433322 12224556788889999999999998644
No 304
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.70 E-value=0.00022 Score=62.29 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+|+++.|.|++|+|||||+.-++..
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999999999977753
No 305
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.70 E-value=0.00026 Score=71.66 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
-+++|+.+.|.|++|||||||+.-+..-. .+ ..+-+++|.-
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly--~p-----~~G~I~~dg~ 535 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLY--KP-----QQGRILLDGV 535 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCC--CC-----CCceEEECCE
Confidence 39999999999999999999999666433 22 2446666654
No 306
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.70 E-value=0.00015 Score=73.19 Aligned_cols=46 Identities=13% Similarity=0.046 Sum_probs=35.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-++-... .....+.+.|++++++++.+||+++|--.
T Consensus 480 ~~p~llllDEPts~LD~---------~~~~~i~~ll~~l~~~~g~tvi~isHdl~ 525 (623)
T PRK10261 480 LNPKVIIADEAVSALDV---------SIRGQIINLLLDLQRDFGIAYLFISHDMA 525 (623)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 47999999987765432 44556788889998888999999998543
No 307
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=0.00022 Score=61.84 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=33.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..+.-.. ......+.+.|++++++.+.+||+++|-.
T Consensus 148 ~~p~llllDEPt~~LD---------~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 192 (214)
T cd03297 148 AQPELLLLDEPFSALD---------RALRLQLLPELKQIKKNLNIPVIFVTHDL 192 (214)
T ss_pred cCCCEEEEcCCcccCC---------HHHHHHHHHHHHHHHHHcCcEEEEEecCH
Confidence 4789999998665432 24455677888888888899999998753
No 308
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.69 E-value=0.00023 Score=65.18 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999997764
No 309
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.69 E-value=0.00028 Score=63.35 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 47 i~~Ge~~~liG~NGsGKSTLlk~L~G 72 (264)
T PRK13546 47 AYEGDVIGLVGINGSGKSTLSNIIGG 72 (264)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999997774
No 310
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.69 E-value=0.00014 Score=62.45 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCCC-cEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFG-VVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G-~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.+| .++.|.||+|+|||||+..++...
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~~~~ 52 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLGLLT 52 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 4445 599999999999999999988444
No 311
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.69 E-value=0.0002 Score=63.45 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+|+++.|.|++|+|||||+.-++..
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 889999999999999999999977753
No 312
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.69 E-value=0.00066 Score=62.10 Aligned_cols=38 Identities=16% Similarity=0.016 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.+.-+.|.|++|+|||.|+..++..++.. +.+|.|+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~------g~~v~~~~~ 192 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK------GVSSTLLHF 192 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc------CCCEEEEEH
Confidence 34568999999999999999999888742 578999876
No 313
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.68 E-value=0.00036 Score=60.36 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=31.1
Q ss_pred chhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCC
Q 035774 88 LKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYG 133 (357)
Q Consensus 88 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~g 133 (357)
+..|+++--- +.+|+.+.|.|++|+|||||+.-++ .+.+++.|
T Consensus 40 ~~aL~disf~-i~~Ge~vGiiG~NGaGKSTLlklia--Gi~~Pt~G 82 (249)
T COG1134 40 FWALKDISFE-IYKGERVGIIGHNGAGKSTLLKLIA--GIYKPTSG 82 (249)
T ss_pred EEEecCceEE-EeCCCEEEEECCCCCcHHHHHHHHh--CccCCCCc
Confidence 4455555333 8999999999999999999998555 34444443
No 314
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.68 E-value=0.00032 Score=62.72 Aligned_cols=27 Identities=30% Similarity=0.583 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+|+++.|.|++|+|||||+.-++..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 889999999999999999999977743
No 315
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.68 E-value=0.00068 Score=59.33 Aligned_cols=26 Identities=42% Similarity=0.611 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~G 62 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLEN 62 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999999997764
No 316
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.67 E-value=0.00053 Score=61.84 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=32.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-+.-... .....+...|++++++++.+||+++|-
T Consensus 171 ~~p~lllLDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tviiisH~ 214 (272)
T PRK13547 171 QPPRYLLLDEPTAALDL---------AHQHRLLDTVRRLARDWNLGVLAIVHD 214 (272)
T ss_pred CCCCEEEEcCccccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 37899999987654422 344457777888888789999999875
No 317
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.67 E-value=0.00044 Score=61.00 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999999977744
No 318
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.67 E-value=0.00047 Score=60.75 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+..+.|+||||+|||+|+..++...... +..+.|++.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~------~~~v~y~~~~ 82 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR------GRAVGYVPLD 82 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC------CCeEEEEEHH
Confidence 3578999999999999999888776531 4789998774
No 319
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.66 E-value=0.00038 Score=69.72 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+.+.|.|++|+|||||+.-++...
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999999999777543
No 320
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=97.66 E-value=0.00049 Score=55.80 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=70.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeE-EeC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL-VLQ 182 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~ 182 (357)
++.|.|+.-||||.+|-.++... +.+++||.+-..++.+.-.++....- + . ..... +-.
T Consensus 2 ~ilvtGgaRSGKS~~AE~la~~~---------~~~v~YvAT~~a~D~Em~~RI~~Hr~----r------R-p~~W~tvE~ 61 (175)
T COG2087 2 MILVTGGARSGKSSFAEALAGES---------GGQVLYVATGRAFDDEMQERIAHHRA----R------R-PEHWRTVEA 61 (175)
T ss_pred eEEEecCccCCchHHHHHHHHhh---------CCceEEEEecCCCCHHHHHHHHHHHh----c------C-CCcceEEec
Confidence 68899999999999999999764 37899999988776544333332210 0 0 01111 111
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCC---ChHHHHHHHHHHHH-HHHHcCCeEEEecccccc
Q 035774 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQHPLSWHISLITS-LAEFSRIPIVVTNQVRPQ 258 (357)
Q Consensus 183 ~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~---r~~~~~~i~~~Lk~-la~~~~~~vv~~~q~~~~ 258 (357)
+. ++...+.. . ..+-++|+||+|+.+....+..... ....+......|-. +....+-.|+++|++...
T Consensus 62 ~~---~l~~~L~~---~--~~~~~~VLvDcLt~wvtNll~~~e~~~~~~~~~~~~~~~L~~al~~~~~~~ilVsNEvG~G 133 (175)
T COG2087 62 PL---DLATLLEA---L--IEPGDVVLVDCLTLWVTNLLFAGEKDWSAEAAIEAEIEALLAALSRAPGTVVLVSNEVGLG 133 (175)
T ss_pred cc---cHHHHHHh---c--ccCCCEEEEEcHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCCccEEEEecCccCC
Confidence 22 22222222 1 1234899999999876653221110 02333333444433 333344577777776543
No 321
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.66 E-value=0.0003 Score=72.28 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+.+.|.|++|||||||+.-++...
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999998666433
No 322
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.66 E-value=0.00034 Score=69.36 Aligned_cols=27 Identities=41% Similarity=0.568 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+.+.|.|++|+|||||+.-++..
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999999977653
No 323
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.66 E-value=0.00032 Score=62.65 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G 49 (256)
T TIGR03873 24 APPGSLTGLLGPNGSGKSTLLRLLAG 49 (256)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 78999999999999999999997764
No 324
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.66 E-value=0.00038 Score=63.68 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=35.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
..++.++.|.|+||+|||||+..++...... +.+|.+|+.+..
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~------~~~v~~i~~D~~ 73 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRR------GLKVAVIAVDPS 73 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEecCCC
Confidence 4568999999999999999999999876531 478888888753
No 325
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.65 E-value=0.00095 Score=59.58 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=25.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
||.|.++.|+|.+|||||||+..+.+.+
T Consensus 18 ip~g~~~~vtGvSGsGKStL~~~~l~~~ 45 (261)
T cd03271 18 IPLGVLTCVTGVSGSGKSSLINDTLYPA 45 (261)
T ss_pred ccCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 8999999999999999999999886443
No 326
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=0.00033 Score=61.63 Aligned_cols=27 Identities=33% Similarity=0.680 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 889999999999999999999977643
No 327
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.65 E-value=0.00045 Score=64.42 Aligned_cols=44 Identities=16% Similarity=0.088 Sum_probs=39.4
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~ 128 (357)
..++|...+|-++. +-+|+=.+|.|+||+|||+|+.+++.....
T Consensus 152 ~~~~~~rvID~l~P--IGkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 152 PEDLSTRIIDLIAP--IGKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred Ccccceeeeeeecc--cccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 47899999999987 778999999999999999999998887764
No 328
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.65 E-value=0.00032 Score=72.03 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+.+.|.|++|+|||||+.-++..
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999999877653
No 329
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.65 E-value=0.00083 Score=55.52 Aligned_cols=41 Identities=29% Similarity=0.557 Sum_probs=31.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
++.|+++.|.||+|+|||||..-+|-- ..| ....++|..++
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF-~~P------~~G~i~i~g~d 62 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGF-ETP------ASGEILINGVD 62 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhc-cCC------CCceEEEcCee
Confidence 889999999999999999998766543 333 34577777654
No 330
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.65 E-value=0.00035 Score=66.71 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=38.2
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++...
T Consensus 126 ~~~l~tG~~~id~l~~--i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 126 DQPLPTGVRAIDGLLT--CGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred ccccCCCceeehhhcc--ccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 4579999999999965 8899999999999999999987776543
No 331
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.64 E-value=0.0019 Score=57.88 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=56.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEE
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (357)
+|+.+.+.|++|+|||+++..++..... .+..+.+++++.. ......+.... ... . .+-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~------~~~~v~~i~~D~~-ri~~~~ql~~~-----------~~~-~-~~~~ 133 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG------KKKTVGFITTDHS-RIGTVQQLQDY-----------VKT-I-GFEV 133 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEecCCC-CHHHHHHHHHH-----------hhh-c-CceE
Confidence 6799999999999999999999887642 1478999988742 22222221110 011 1 1233
Q ss_pred eCCCCHHHHHHHHHHHHHHhhhcCeeEEEEecccccc
Q 035774 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALV 217 (357)
Q Consensus 181 ~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~ 217 (357)
....+..++.+.+..+ -...+.++|+||......
T Consensus 134 ~~~~~~~~l~~~l~~l---~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 134 IAVRDEAAMTRALTYF---KEEARVDYILIDTAGKNY 167 (270)
T ss_pred EecCCHHHHHHHHHHH---HhcCCCCEEEEECCCCCc
Confidence 3334444554433332 122468999999887654
No 332
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.64 E-value=0.00039 Score=69.69 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+.+.|.|++|+|||||+.-++...
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 8899999999999999999999887644
No 333
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=97.64 E-value=5.1e-05 Score=62.95 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=60.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEe-CC
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL-QP 183 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~ 183 (357)
++|.|...||||.||.+++... +.+++|+.|-..++.+...++..+. . .. ...+..+ .+
T Consensus 1 ilv~GG~rSGKS~~Ae~la~~~---------~~~~~YiAT~~~~D~em~~RI~~H~------~----~R-~~~w~tiE~~ 60 (167)
T PF02283_consen 1 ILVTGGARSGKSSFAERLALSF---------GGPVTYIATARPFDEEMRERIARHR------Q----RR-PKGWITIEEP 60 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHTS-----------SCEEEEESSHHHHHHHHHHHHHHH------H----HS-STCEEEEE-S
T ss_pred CEEeCCCCcchHHHHHHHHHhc---------CCCcEEEeCCCCCCHHHHHHHHHHH------H----hC-CCCcEEEecc
Confidence 6799999999999999999322 3789999997655443333333221 0 01 1222222 22
Q ss_pred CCHHHHHHHHHHHHHHhhhc-CeeEEEEeccccccCCCCCCCC-CChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 184 TSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGVHEQRA-PGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 184 ~~~~~~~~~l~~l~~~~~~~-~~~lvvIDsl~~l~~~~~~~~~-~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+..+. + ... ..+.|+||+++.+....+.... .......++.+.+..+.+...-.||++|++..
T Consensus 61 ~~l~~~---~-------~~~~~~~~vLlDclt~wl~n~l~~~~~~~~~~~~~i~~~l~~l~~~~~~lViVsnEVG~ 126 (167)
T PF02283_consen 61 RDLAEA---L-------EELSPGDVVLLDCLTLWLANLLFAEEDDEEDILEEIERLLEALRERNADLVIVSNEVGW 126 (167)
T ss_dssp S-GGGT---S--------TTS-T-EEEEE-HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--SEEEEEEE---S
T ss_pred hhHHHH---H-------HHhccCCeEEEeCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCCCEEEEEcCCCC
Confidence 322221 1 112 2589999999988755221110 01223344444555554444455556665543
No 334
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=0.00073 Score=59.55 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 889999999999999999999988753
No 335
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.63 E-value=0.00036 Score=66.79 Aligned_cols=29 Identities=31% Similarity=0.356 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|+.++.-++|+||||+|||+++..++...
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 57788889999999999999999988754
No 336
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.63 E-value=0.00032 Score=65.70 Aligned_cols=141 Identities=20% Similarity=0.211 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCC-----CCeEEEEeCCCCCchHHHH-HHHhccCchhhcccch
Q 035774 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGL-----DGGVIYIDVESTFTSRRMI-EMGASSFPEIFHSKGM 170 (357)
Q Consensus 97 GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~-----~~~vl~i~~e~~~~~~rl~-~~~~~~~~~~~~~~~~ 170 (357)
|.+..|+++.+.||+|.|||||+.-+|- ...+..|+. ..+--||+.+-.-..+.+. ......+. ...+
T Consensus 362 G~i~~gEvigilGpNgiGKTTFvk~LAG--~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~----~s~~ 435 (591)
T COG1245 362 GEIYDGEVIGILGPNGIGKTTFVKLLAG--VIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFG----SSYF 435 (591)
T ss_pred CeeecceEEEEECCCCcchHHHHHHHhc--cccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcc----cchh
Confidence 6799999999999999999999997773 222233321 1233455554332222222 22211111 1101
Q ss_pred HHHhhcCeEE-------eCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q 035774 171 AQEMAGRILV-------LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAE 243 (357)
Q Consensus 171 ~~~~~~~i~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~ 243 (357)
..++...+.+ ++..+..++..+. .........++-++|.-++.... .+--.+++.+++++.
T Consensus 436 ~~ei~~pl~l~~i~e~~v~~LSGGELQRva---Iaa~L~reADlYllDEPSA~LDv---------EqR~~vakvIRR~~e 503 (591)
T COG1245 436 KTEIVKPLNLEDLLERPVDELSGGELQRVA---IAAALSREADLYLLDEPSAYLDV---------EQRIIVAKVIRRFIE 503 (591)
T ss_pred HHhhcCccchHHHHhcccccCCchhHHHHH---HHHHhccccCEEEecCchhhccH---------HHHHHHHHHHHHHHh
Confidence 1111111110 1222333432221 11122356899999998887643 122236788999999
Q ss_pred HcCCeEEEeccc
Q 035774 244 FSRIPIVVTNQV 255 (357)
Q Consensus 244 ~~~~~vv~~~q~ 255 (357)
+.+.+.+++.|-
T Consensus 504 ~~~kta~vVdHD 515 (591)
T COG1245 504 NNEKTALVVDHD 515 (591)
T ss_pred hcCceEEEEecc
Confidence 999999999884
No 337
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.63 E-value=0.00042 Score=64.87 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=32.0
Q ss_pred CchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 035774 87 RLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128 (357)
Q Consensus 87 G~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~ 128 (357)
|+..+|-.+. +.+|+.+.|.|+||+|||+++..++.....
T Consensus 155 ~~R~id~~~p--ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 155 STRVLDLFAP--IGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred ceeeeeeEEE--eCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 3344466665 789999999999999999999988876653
No 338
>PRK13409 putative ATPase RIL; Provisional
Probab=97.63 E-value=0.00051 Score=68.69 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=34.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-++.... .....+.+.|++++++.+.+||+++|-
T Consensus 470 ~~p~llLLDEPt~~LD~---------~~~~~l~~~l~~l~~~~g~tviivsHD 513 (590)
T PRK13409 470 RDADLYLLDEPSAHLDV---------EQRLAVAKAIRRIAEEREATALVVDHD 513 (590)
T ss_pred cCCCEEEEeCCccCCCH---------HHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 47999999987765532 445567888999999889999999885
No 339
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.00035 Score=60.09 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 889999999999999999999977754
No 340
>PRK06893 DNA replication initiation factor; Validated
Probab=97.62 E-value=0.00053 Score=60.22 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=30.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
..+.|+|+||+|||.|+..++..++.. +.++.|++.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~------~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN------QRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc------CCCeEEeeHH
Confidence 468999999999999999999887642 4678998874
No 341
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00067 Score=60.04 Aligned_cols=26 Identities=38% Similarity=0.664 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999997774
No 342
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.62 E-value=0.0013 Score=54.47 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAAL 128 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~ 128 (357)
.+.+++|.||+|+|||+++..++.....
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3479999999999999999998776654
No 343
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.62 E-value=0.00054 Score=61.14 Aligned_cols=58 Identities=28% Similarity=0.239 Sum_probs=48.1
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.+.+.||+..+|-++. +-+|+=..|.|++|+|||+|+.+++.+...+. ...++|.-.-
T Consensus 50 ~e~L~TGIr~ID~l~p--ig~GQr~~If~~~G~GKTtLa~~i~~~i~~~~-----~~~~V~~~iG 107 (274)
T cd01133 50 TEILETGIKVIDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNIAKAH-----GGYSVFAGVG 107 (274)
T ss_pred CcccccCceeeeccCC--cccCCEEEEecCCCCChhHHHHHHHHHHHhcC-----CCEEEEEEec
Confidence 4689999999999987 88999999999999999999999999886431 2456666543
No 344
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=0.00049 Score=60.32 Aligned_cols=27 Identities=33% Similarity=0.521 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 889999999999999999999988743
No 345
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.0011 Score=61.20 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=75.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC--CCchHHHHHHHhccCchhhc------ccc
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES--TFTSRRMIEMGASSFPEIFH------SKG 169 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~--~~~~~rl~~~~~~~~~~~~~------~~~ 169 (357)
-+.+|+++-|.|.+||||||||+-+. .+.++. .+-++++.+. ....++.++.....+.+++- .+.
T Consensus 345 ~ikrGelvFliG~NGsGKST~~~LLt--GL~~Pq-----sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~ 417 (546)
T COG4615 345 TIKRGELVFLIGGNGSGKSTLAMLLT--GLYQPQ-----SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG 417 (546)
T ss_pred EEecCcEEEEECCCCCcHHHHHHHHh--cccCCC-----CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc
Confidence 38899999999999999999999555 443333 4467777653 11234444444332222111 110
Q ss_pred -----hHHHhhcCe------------EEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHH
Q 035774 170 -----MAQEMAGRI------------LVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLS 232 (357)
Q Consensus 170 -----~~~~~~~~i------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~ 232 (357)
.+...+.++ +....-+.. ....+..+...++ .-+++|.|..++=..+ .--+
T Consensus 418 ~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStG-QkKRlAll~AllE--eR~Ilv~DEWAADQDP---------aFRR 485 (546)
T COG4615 418 KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTG-QKKRLALLLALLE--ERDILVLDEWAADQDP---------AFRR 485 (546)
T ss_pred CCChHHHHHHHHHHHHhhhhcccCCcccccccccc-hHHHHHHHHHHHh--hCCeEEeehhhccCCh---------HHHH
Confidence 011111111 000001111 1222333334443 3567899977643222 2234
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccc
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+.+.|--+.++.|.||++++|--.
T Consensus 486 ~FY~~lLp~LK~qGKTI~aIsHDd~ 510 (546)
T COG4615 486 EFYQVLLPLLKEQGKTIFAISHDDH 510 (546)
T ss_pred HHHHHHhHHHHHhCCeEEEEecCch
Confidence 5667777788889999999998644
No 346
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=97.61 E-value=3.7e-05 Score=64.03 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=31.0
Q ss_pred CchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 87 RLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 87 G~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
|+..|..+--- +.+|++-.|.||+|+|||||+--|.-.
T Consensus 17 GF~Aln~ls~~-v~~Gelr~lIGpNGAGKTT~mD~ItGK 54 (249)
T COG4674 17 GFKALNDLSFS-VDPGELRVLIGPNGAGKTTLMDVITGK 54 (249)
T ss_pred ceeeeeeeEEE-ecCCeEEEEECCCCCCceeeeeeeccc
Confidence 67777776543 899999999999999999998765543
No 347
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00086 Score=56.35 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=38.9
Q ss_pred CCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 84 i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.++-...++++.-- ...|+++.|.|++|+||||++.-++.- +.| ...+++|+.-.
T Consensus 11 y~~~v~AvrdVSF~-ae~Gei~GlLG~NGAGKTT~LRmiatl-L~P------~~G~v~idg~d 65 (245)
T COG4555 11 YGSKVQAVRDVSFE-AEEGEITGLLGENGAGKTTLLRMIATL-LIP------DSGKVTIDGVD 65 (245)
T ss_pred ccCHHhhhhheeEE-eccceEEEEEcCCCCCchhHHHHHHHh-ccC------CCceEEEeecc
Confidence 33434466666543 789999999999999999998866643 333 35578887543
No 348
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.61 E-value=0.001 Score=56.76 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAG 48 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999999997764
No 349
>PF13245 AAA_19: Part of AAA domain
Probab=97.61 E-value=0.00011 Score=52.34 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=32.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+.+++|.|+||+|||+++.+.+......... .+.++++++...
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~--~~~~vlv~a~t~ 52 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARAD--PGKRVLVLAPTR 52 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcC--CCCeEEEECCCH
Confidence 5688899999999999999988887632111 157889887643
No 350
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.60 E-value=0.0006 Score=68.89 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=35.0
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-++-... .....+...|++++++++++||+++|--
T Consensus 185 ~~P~lLllDEPt~~LD~---------~~~~~l~~ll~~l~~~~g~tvi~itHdl 229 (623)
T PRK10261 185 CRPAVLIADEPTTALDV---------TIQAQILQLIKVLQKEMSMGVIFITHDM 229 (623)
T ss_pred CCCCEEEEeCCCCccCH---------HHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 47999999988765533 4445677788888888899999999864
No 351
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.60 E-value=0.00055 Score=63.30 Aligned_cols=43 Identities=9% Similarity=0.197 Sum_probs=34.3
Q ss_pred CeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 204 QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 204 ~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
++++|++|.-++-. ....-.+++..|+.|.++++.+-++++|-
T Consensus 444 kP~~i~LDEPTSAL---------D~SVQaQvv~LLr~LQ~k~~LsYLFISHD 486 (534)
T COG4172 444 KPELILLDEPTSAL---------DRSVQAQVLDLLRDLQQKHGLSYLFISHD 486 (534)
T ss_pred CCcEEEecCCchHh---------hHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 68999999766433 22445678899999999999999999984
No 352
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=0.00067 Score=61.34 Aligned_cols=27 Identities=44% Similarity=0.744 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 44 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 44 FPARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999999988753
No 353
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=97.59 E-value=0.0039 Score=55.25 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=96.9
Q ss_pred chhHHhhhc---CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCch-HHHHHHHhccCch
Q 035774 88 LKGLDAALC---GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS-RRMIEMGASSFPE 163 (357)
Q Consensus 88 ~~~LD~~l~---GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~-~rl~~~~~~~~~~ 163 (357)
+++|+.+|. +..++|.+++|... ++-=+.|..+++...+.. +.+|+|+++..++.- .++.+...-.+..
T Consensus 2 f~eln~ll~~~~~~~~~g~~ili~d~-~~dgsFLlh~~L~~~Lk~------~~~V~fv~~~q~~~HY~~v~~KLG~NL~~ 74 (249)
T PF09807_consen 2 FPELNSLLNWSPDSVPPGKLILIEDC-ETDGSFLLHHFLSQYLKA------GCKVCFVAFSQSFSHYNNVAQKLGVNLSA 74 (249)
T ss_pred chHHHHHhcCCCCCCCCCeEEEEEcC-CCCchhHHHHHHHHHhcC------CCcEEEEEccCCHHHHHHHHHhhEecchH
Confidence 467777774 45889999999999 888899999999988852 589999999887653 1111111111100
Q ss_pred h-----hcccchHHHhhcC------------eEEeCCCCHHHHHHHHHHHHHHhhh---cCeeEEEEeccccccCCCCCC
Q 035774 164 I-----FHSKGMAQEMAGR------------ILVLQPTSLSEFTESLEKIKVSLLQ---NQVKLLVIDSMEALVPGVHEQ 223 (357)
Q Consensus 164 ~-----~~~~~~~~~~~~~------------i~~~~~~~~~~~~~~l~~l~~~~~~---~~~~lvvIDsl~~l~~~~~~~ 223 (357)
. +..-+......+. +.+........+..+...+...+.. .+..+||||.++.+.....
T Consensus 75 ~~~~gql~fiD~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~L~~L~~~I~~~l~~~~~~~~~~liIDdls~Ll~lG~-- 152 (249)
T PF09807_consen 75 AKEKGQLVFIDGLKSSLDLLFDEDSSDEPNPLKFLREDNASSLRSLYEFIQEALSPADSNGSVVLIIDDLSVLLSLGV-- 152 (249)
T ss_pred hccCCcEEEeehhhhhhhhhhccccccCCccccccccCCcchHHHHHHHHHHHHhhccCCCCeEEEEeCHHHHHHcCC--
Confidence 0 0000000100000 1111111223455555666555543 3578999999999987422
Q ss_pred CCCChHHHHHHHHHHH-HHHHHcCCeEEEeccccc
Q 035774 224 RAPGQHPLSWHISLIT-SLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 224 ~~~r~~~~~~i~~~Lk-~la~~~~~~vv~~~q~~~ 257 (357)
....+-.+++.++ .++.+.++.+|++.|...
T Consensus 153 ---s~~~vldF~~ycra~l~~~~~~~lVvl~h~d~ 184 (249)
T PF09807_consen 153 ---SSNDVLDFIHYCRATLCSESNGSLVVLVHCDI 184 (249)
T ss_pred ---CHHHHHHHHHHHHHHhccccCCCEEEEEecCC
Confidence 2356667888888 678888888888877643
No 354
>PRK05642 DNA replication initiation factor; Validated
Probab=97.59 E-value=0.0005 Score=60.56 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
..+.|+|++|+|||.|+..++...... +.+|+|++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~------~~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR------GEPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC------CCcEEEeeHH
Confidence 467899999999999998887665431 4789999874
No 355
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00012 Score=69.63 Aligned_cols=30 Identities=47% Similarity=0.635 Sum_probs=24.9
Q ss_pred hcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 95 LCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 95 l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|||-+|+| +++.||||+|||.||..+|-.+
T Consensus 332 LGGKLPKG--VLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 332 LGGKLPKG--VLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccCcCCCc--eEEeCCCCCchhHHHHHhhccc
Confidence 56779998 8899999999999999777433
No 356
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.58 E-value=0.00033 Score=69.08 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=32.6
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|..++-... .....+...|++++++ +.+||+++|-..
T Consensus 157 ~~p~lllLDEPt~~LD~---------~~~~~l~~~l~~~~~~-g~tiiivtHd~~ 201 (510)
T PRK15439 157 RDSRILILDEPTASLTP---------AETERLFSRIRELLAQ-GVGIVFISHKLP 201 (510)
T ss_pred cCCCEEEEECCCCCCCH---------HHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 47999999987765433 3445567778887664 899999988643
No 357
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.58 E-value=0.00074 Score=67.36 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=30.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|+.+.|.|++|+|||||+.-++... ++ ..+.++++..
T Consensus 365 i~~G~~~aivG~sGsGKSTl~~ll~g~~--~p-----~~G~i~~~g~ 404 (555)
T TIGR01194 365 IAQGDIVFIVGENGCGKSTLAKLFCGLY--IP-----QEGEILLDGA 404 (555)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC--CC-----CCcEEEECCE
Confidence 7899999999999999999999776433 22 2445666654
No 358
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.58 E-value=0.00038 Score=68.68 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=32.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-++-... .....+.+.|++++++ +.+||+++|-..
T Consensus 162 ~~p~lllLDEPt~~LD~---------~~~~~l~~~l~~l~~~-g~tiiivsHd~~ 206 (510)
T PRK09700 162 LDAKVIIMDEPTSSLTN---------KEVDYLFLIMNQLRKE-GTAIVYISHKLA 206 (510)
T ss_pred cCCCEEEEeCCCCCCCH---------HHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 47899999987765432 4455677788888765 899999998643
No 359
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.58 E-value=0.00024 Score=67.70 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=39.3
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.+.||+..+|.++. +.+|+.+.|.|++|+|||+|+.+++...
T Consensus 144 ~e~l~TGi~~ID~l~~--i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 144 EAPLPTGVRIVDGLMT--LGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred ccccCCCceeccceee--ecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999965 7899999999999999999998887654
No 360
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=97.58 E-value=0.00012 Score=62.98 Aligned_cols=169 Identities=16% Similarity=0.197 Sum_probs=75.6
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc-
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS- 160 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~- 160 (357)
-.++.|.......+.--+....=++|+|.+|+|||+++..++...+..... .+..+..+|.... .-..+.......
T Consensus 18 ~~i~~g~~~~~~~v~~dl~~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p--~~~~l~iiD~k~~-~l~~~~~~~~~~~ 94 (205)
T PF01580_consen 18 GPIPVGVDQRGDPVVLDLKKNPHLLIAGATGSGKSTLLRTLLLSLALTYSP--DDVQLYIIDPKGS-DLAPLADLPHVAA 94 (205)
T ss_dssp TEEEEEEETTS-EEEEEGGGS-SEEEE--TTSSHHHHHHHHHHHHHTT--T--TTEEEEEE-TTSS-CCGGGTT-TTBSS
T ss_pred eEEEecccCCCCEEEEEcCCCceEEEEcCCCCCccHHHHHHHHHHHHHhcC--CccEEEEEcCCcc-ccchhhhhhhhcc
Confidence 346666665444333234445579999999999999999999998873211 1356666776532 111111100000
Q ss_pred --C-chhhccc----chHHHhhcCeEEeC---CCCHHHHHHHHHHHHHH------hhhcCeeEEEEeccccccCCCCCCC
Q 035774 161 --F-PEIFHSK----GMAQEMAGRILVLQ---PTSLSEFTESLEKIKVS------LLQNQVKLLVIDSMEALVPGVHEQR 224 (357)
Q Consensus 161 --~-~~~~~~~----~~~~~~~~~i~~~~---~~~~~~~~~~l~~l~~~------~~~~~~~lvvIDsl~~l~~~~~~~~ 224 (357)
. ....... .+..++..+..+.. ..+.............. ......-+++||.+..+........
T Consensus 95 ~~~~~~~~~~~~~l~~l~~em~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~iDe~~~l~~~~~~~~ 174 (205)
T PF01580_consen 95 VAVATDPEEILRLLEELVEEMERRQALLREAGVRNIDDYNEERGELPDDIFADPWLKELPPIFIVIDEFAALRDSAPDDS 174 (205)
T ss_dssp -S-B-SHHHHHHHHHHHHHHHHHHHHHHHHCT-SSHHHHHHHHHHHHHTT----B-----EEEEEECTHHHHHHHHHHH-
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHhhhhccccccccccccCchHHHHhhhHHHHHhhcchhh
Confidence 0 0000000 00011111111111 11111111111110000 0123567889999999875422111
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 225 APGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 225 ~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
...+...+..+-+.++..|+.+|+..|-.
T Consensus 175 ---~~~~~~~l~~i~~~gR~~Gi~li~~~Q~p 203 (205)
T PF01580_consen 175 ---KKEIMDLLARIARKGRAAGIHLILATQRP 203 (205)
T ss_dssp ------HHHHHHHHHHHCGGGTEEEEEEESS-
T ss_pred ---HHHHHHHHHHHHHHHHhcCEEEEEEeCCC
Confidence 23455566666677889999999998853
No 361
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.57 E-value=0.00063 Score=59.19 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999999977744
No 362
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.57 E-value=0.00046 Score=62.27 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMG 55 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999997764
No 363
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.57 E-value=0.00023 Score=64.63 Aligned_cols=121 Identities=19% Similarity=0.198 Sum_probs=65.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHH-HHHhccCchhhcccchHHHhhcCe
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMI-EMGASSFPEIFHSKGMAQEMAGRI 178 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~-~~~~~~~~~~~~~~~~~~~~~~~i 178 (357)
....++.|.|.+|+|||+||.+++........ -..++|++.....+...+. ++... +....
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~----f~~v~wv~~~~~~~~~~~~~~i~~~--------------l~~~~ 78 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNR----FDGVIWVSLSKNPSLEQLLEQILRQ--------------LGEPD 78 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCC----CTEEEEEEEES-SCCHHHHHHHHHH--------------HTCC-
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccc----ccccccccccccccccccccccccc--------------ccccc
Confidence 77889999999999999999999976332211 2578899877655443332 22211 10000
Q ss_pred E-EeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 179 L-VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 179 ~-~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
. .....+ .......+...+... .-++|+|.+.... .+..+...+. ....++.||+|+...
T Consensus 79 ~~~~~~~~---~~~~~~~l~~~L~~~-~~LlVlDdv~~~~------------~~~~l~~~~~--~~~~~~kilvTTR~~ 139 (287)
T PF00931_consen 79 SSISDPKD---IEELQDQLRELLKDK-RCLLVLDDVWDEE------------DLEELREPLP--SFSSGSKILVTTRDR 139 (287)
T ss_dssp STSSCCSS---HHHHHHHHHHHHCCT-SEEEEEEEE-SHH------------HH-------H--CHHSS-EEEEEESCG
T ss_pred cccccccc---cccccccchhhhccc-cceeeeeeecccc------------cccccccccc--ccccccccccccccc
Confidence 0 011222 333445555555443 7889999865332 2222222222 234588999987653
No 364
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.57 E-value=0.00082 Score=59.68 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+|+++.|.|++|+|||||+.-++..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 24 VRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 889999999999999999999977654
No 365
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.57 E-value=0.00069 Score=55.44 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=32.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
..+++++-|.-+--. ....-..+...|..+.++++.|.|+++|-
T Consensus 163 ~~P~vLfADEPTGNL---------D~~Tg~~iaDLlF~lnre~G~TlVlVTHD 206 (228)
T COG4181 163 GRPDVLFADEPTGNL---------DRATGDKIADLLFALNRERGTTLVLVTHD 206 (228)
T ss_pred CCCCEEeccCCCCCc---------chhHHHHHHHHHHHHhhhcCceEEEEeCC
Confidence 357888877544221 22444568888999999999999999885
No 366
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.56 E-value=0.00062 Score=64.66 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|+.+-.-++|+||||+|||++|..++...
T Consensus 161 g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 161 GIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 45666669999999999999999988754
No 367
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.56 E-value=0.00095 Score=58.45 Aligned_cols=28 Identities=39% Similarity=0.715 Sum_probs=25.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.+|+++.|.|++|+|||||+.-++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 8899999999999999999999777543
No 368
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.56 E-value=0.00064 Score=58.24 Aligned_cols=121 Identities=19% Similarity=0.213 Sum_probs=70.0
Q ss_pred CCCCcE-EEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 99 VPFGVV-TELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 99 i~~G~l-~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
...|-+ ++|.|||++||||++..+|...+-... +=...+|..||.-... .... ...++ .....+
T Consensus 133 y~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~-~~l~kkv~IiDersEI-----ag~~-~gvpq--------~~~g~R 197 (308)
T COG3854 133 YQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN-QFLPKKVGIIDERSEI-----AGCL-NGVPQ--------HGRGRR 197 (308)
T ss_pred HhcCceeeEEecCCCCChHHHHHHHHHHhhcccc-ccCCceEEEEeccchh-----hccc-cCCch--------hhhhhh
Confidence 345777 999999999999999999998764211 1146889999874421 1100 00000 011223
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
+-+.++..-. .-+..+++.+.+.++|||.+..... ... +.. |-+.|+-++.+.|-..
T Consensus 198 ~dVld~cpk~------~gmmmaIrsm~PEViIvDEIGt~~d------------~~A----~~t-a~~~GVkli~TaHG~~ 254 (308)
T COG3854 198 MDVLDPCPKA------EGMMMAIRSMSPEVIIVDEIGTEED------------ALA----ILT-ALHAGVKLITTAHGNG 254 (308)
T ss_pred hhhcccchHH------HHHHHHHHhcCCcEEEEeccccHHH------------HHH----HHH-HHhcCcEEEEeecccc
Confidence 3333332211 1223445567899999999885421 111 222 3346999999988543
No 369
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=97.55 E-value=0.00049 Score=59.47 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=42.3
Q ss_pred CCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 86 TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
||++.+|-++. +-+|+=+.|.|++|+|||+|+.+++.+... ..++|+-..+
T Consensus 1 TGir~ID~l~P--ig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~--------d~~V~~~iGe 51 (215)
T PF00006_consen 1 TGIRAIDLLFP--IGRGQRIGIFGGAGVGKTVLLQEIANNQDA--------DVVVYALIGE 51 (215)
T ss_dssp -SHHHHHHHSC--EETTSEEEEEESTTSSHHHHHHHHHHHCTT--------TEEEEEEESE
T ss_pred CCCceeccccc--cccCCEEEEEcCcccccchhhHHHHhcccc--------cceeeeeccc
Confidence 89999999987 889999999999999999999999998842 3447766543
No 370
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00063 Score=58.88 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++| ++.|.|++|+|||||+.-++.
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhC
Confidence 7789 999999999999999997764
No 371
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00077 Score=63.48 Aligned_cols=43 Identities=28% Similarity=0.382 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+.++.+.|++|+||||.+..+|........ ..+.+|.+++++.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~--~~g~~V~lit~Dt 216 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSD--DKSLNIKIITIDN 216 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc--cCCCeEEEEeccC
Confidence 569999999999999999999987754211 1247888888874
No 372
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.55 E-value=0.00052 Score=68.72 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+.+.|.|++|+|||||+.-++...
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999999777543
No 373
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00071 Score=67.18 Aligned_cols=121 Identities=18% Similarity=0.271 Sum_probs=76.9
Q ss_pred hhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHH
Q 035774 94 ALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQE 173 (357)
Q Consensus 94 ~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~ 173 (357)
+++-|+.+.+=++++||||+|||.+|..+|-++. --|++..+ ++-+ .|
T Consensus 697 LfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-----------L~FlSVKG---PELL-NM----------------- 744 (953)
T KOG0736|consen 697 LFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-----------LNFLSVKG---PELL-NM----------------- 744 (953)
T ss_pred hhhccccccceeEEECCCCCchHHHHHHHHhhce-----------eeEEeecC---HHHH-HH-----------------
Confidence 4566899999999999999999999998887764 33666654 2211 11
Q ss_pred hhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCC---ChHHHHHHHHHHHHHHHHcCCeEE
Q 035774 174 MAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP---GQHPLSWHISLITSLAEFSRIPIV 250 (357)
Q Consensus 174 ~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~---r~~~~~~i~~~Lk~la~~~~~~vv 250 (357)
++ ..+.+.+.+++++.+. -.+.+|+.|.|.++.+........ -...+.+++..|..+.....-.|+
T Consensus 745 -----YV--GqSE~NVR~VFerAR~----A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VF 813 (953)
T KOG0736|consen 745 -----YV--GQSEENVREVFERARS----AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVF 813 (953)
T ss_pred -----Hh--cchHHHHHHHHHHhhc----cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceE
Confidence 11 1233455556655443 468999999999998763221111 124566666677777664455666
Q ss_pred Eeccccc
Q 035774 251 VTNQVRP 257 (357)
Q Consensus 251 ~~~q~~~ 257 (357)
++.-.++
T Consensus 814 ViGATNR 820 (953)
T KOG0736|consen 814 VIGATNR 820 (953)
T ss_pred EEecCCC
Confidence 6655444
No 374
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=8.3e-05 Score=66.52 Aligned_cols=132 Identities=19% Similarity=0.329 Sum_probs=78.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCe
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI 178 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i 178 (357)
+--..++++.||||+|||+||..+|-....+. .+...+...|.... -++ +..+|..
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~--~~~y~~~~liEins----hsL-------FSKWFsE----------- 229 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRT--NDRYYKGQLIEINS----HSL-------FSKWFSE----------- 229 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeee--cCccccceEEEEeh----hHH-------HHHHHhh-----------
Confidence 55678999999999999999999887664321 11123333333221 111 1111111
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhhhc-CeeEEEEeccccccCCC---CCCCCC--ChHHHHHHHHHHHHHHHHcCCeEEEe
Q 035774 179 LVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVIDSMEALVPGV---HEQRAP--GQHPLSWHISLITSLAEFSRIPIVVT 252 (357)
Q Consensus 179 ~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvvIDsl~~l~~~~---~~~~~~--r~~~~~~i~~~Lk~la~~~~~~vv~~ 252 (357)
+..-+..+++++..++... ..=.|.||.+-++.... ..++.. .-..+..++..|.++.+..|+.++.|
T Consensus 230 ------SgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~T 303 (423)
T KOG0744|consen 230 ------SGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILAT 303 (423)
T ss_pred ------hhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEec
Confidence 1122334455555555543 45678899887764331 111111 12456778888999999999999999
Q ss_pred ccccccCC
Q 035774 253 NQVRPQSH 260 (357)
Q Consensus 253 ~q~~~~~~ 260 (357)
+.+....+
T Consensus 304 SNl~~siD 311 (423)
T KOG0744|consen 304 SNLTDSID 311 (423)
T ss_pred cchHHHHH
Confidence 98876543
No 375
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.55 E-value=0.00069 Score=67.44 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+.+.|.|++|+|||||+.-++...
T Consensus 341 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 341 LQAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999999777543
No 376
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.55 E-value=0.0014 Score=58.48 Aligned_cols=34 Identities=32% Similarity=0.246 Sum_probs=27.4
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
.|+.+- -+.+|+++.|.|++|+|||||+.-++..
T Consensus 16 ~l~~i~--~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 16 KLHRLP--VPREGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred hhhcCC--CCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455543 2789999999999999999999866643
No 377
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00042 Score=61.88 Aligned_cols=26 Identities=35% Similarity=0.675 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999997774
No 378
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.54 E-value=0.0013 Score=60.69 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=52.8
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhc
Q 035774 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAG 176 (357)
Q Consensus 97 GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 176 (357)
.|+++-.+++|.||||+|||.+|..++... +...+.++.-+ + ... | .
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~el---------g~~~i~vsa~e------L---~sk-~---v----------- 189 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKM---------GIEPIVMSAGE------L---ESE-N---A----------- 189 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHc---------CCCeEEEEHHH------h---hcC-c---C-----------
Confidence 458889999999999999999999888765 24455554421 1 000 0 0
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHHh-hhcCeeEEEEeccccccCC
Q 035774 177 RILVLQPTSLSEFTESLEKIKVSL-LQNQVKLLVIDSMEALVPG 219 (357)
Q Consensus 177 ~i~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lvvIDsl~~l~~~ 219 (357)
-.+...+.+++....... .+..+.+|+||.|-++...
T Consensus 190 ------GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~ 227 (413)
T PLN00020 190 ------GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGR 227 (413)
T ss_pred ------CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCC
Confidence 011122333344333333 2456899999999998865
No 379
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.53 E-value=0.00065 Score=67.20 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=35.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-++-... .....+...|++++++.+.+||+++|-..
T Consensus 185 ~~p~lllLDEPt~~LD~---------~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 185 KEPFLFLADEPTGTLDP---------QTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred cCCCEEEeeCCcccCCH---------HHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 47899999987765533 44556778889998888999999998654
No 380
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.52 E-value=0.00023 Score=67.63 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=37.1
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
...+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++.
T Consensus 136 ~~~l~tGi~aID~ll~--i~~GqrigI~G~sG~GKSTLL~~I~~ 177 (433)
T PRK07594 136 TQPLMTGIRAIDSVAT--CGEGQRVGIFSAPGVGKSTLLAMLCN 177 (433)
T ss_pred hheeCCCceeeeeeee--cCCCCEEEEECCCCCCccHHHHHhcC
Confidence 3468899999999965 99999999999999999999976664
No 381
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.51 E-value=0.00068 Score=58.29 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
+|++++|.|++|+|||||+..++....
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~~ 54 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAVL 54 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHH
Confidence 469999999999999999999985543
No 382
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=97.51 E-value=0.00056 Score=65.55 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=47.9
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||+..+|.++. +-+|+=..|.|++|+|||+||+.++.+... .+..|+|.-.-+
T Consensus 122 ~epl~TGI~aID~l~p--igrGQR~~I~g~~g~GKt~Lal~~I~~q~~------~dv~cV~~~IGe 179 (485)
T CHL00059 122 YEPLQTGLIAIDSMIP--IGRGQRELIIGDRQTGKTAVATDTILNQKG------QNVICVYVAIGQ 179 (485)
T ss_pred CcccccCceeeccccc--cccCCEEEeecCCCCCHHHHHHHHHHhccc------CCeEEEEEEecC
Confidence 5689999999999987 789999999999999999998887766542 245678887643
No 383
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.51 E-value=0.00054 Score=70.58 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|+.++.-++|+||||+|||+|+..++...
T Consensus 208 gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 208 GIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 58888999999999999999999887654
No 384
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.51 E-value=0.00079 Score=66.29 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=32.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-++-... .....+.+.|+++++ .+.+||+++|-..
T Consensus 158 ~~p~lllLDEPt~~LD~---------~~~~~l~~~l~~l~~-~~~tvii~sHd~~ 202 (501)
T PRK10762 158 FESKVIIMDEPTDALTD---------TETESLFRVIRELKS-QGRGIVYISHRLK 202 (501)
T ss_pred cCCCEEEEeCCcCCCCH---------HHHHHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence 47999999987765433 344456677777765 4889999988644
No 385
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00026 Score=68.47 Aligned_cols=116 Identities=19% Similarity=0.223 Sum_probs=69.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
|+.|-.=+++.||||||||.||..+|.+.. .+-+-|+.-+ -+..
T Consensus 219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~---------vPf~~isApe-----ivSG---------------------- 262 (802)
T KOG0733|consen 219 GVRPPRGVLLHGPPGCGKTSLANAIAGELG---------VPFLSISAPE-----IVSG---------------------- 262 (802)
T ss_pred CCCCCCceeeeCCCCccHHHHHHHHhhhcC---------CceEeecchh-----hhcc----------------------
Confidence 688888899999999999999998886553 2322222211 1111
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCC---hHHHHHHHHHHHHHHHH--cCCeEEEe
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG---QHPLSWHISLITSLAEF--SRIPIVVT 252 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r---~~~~~~i~~~Lk~la~~--~~~~vv~~ 252 (357)
+...+-..+.+++++. ....+.+|+||.|.++.+.... +.| +..+.+++..+..+..+ .|-+|+++
T Consensus 263 ---vSGESEkkiRelF~~A----~~~aPcivFiDeIDAI~pkRe~--aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVI 333 (802)
T KOG0733|consen 263 ---VSGESEKKIRELFDQA----KSNAPCIVFIDEIDAITPKREE--AQREMERRIVAQLLTSMDELSNEKTKGDPVLVI 333 (802)
T ss_pred ---cCcccHHHHHHHHHHH----hccCCeEEEeecccccccchhh--HHHHHHHHHHHHHHHhhhcccccccCCCCeEEE
Confidence 0111223344444432 3456899999999999765211 222 23345555555555433 46788888
Q ss_pred cccccc
Q 035774 253 NQVRPQ 258 (357)
Q Consensus 253 ~q~~~~ 258 (357)
.-.++.
T Consensus 334 gATnRP 339 (802)
T KOG0733|consen 334 GATNRP 339 (802)
T ss_pred ecCCCC
Confidence 776654
No 386
>PLN03130 ABC transporter C family member; Provisional
Probab=97.51 E-value=0.00047 Score=76.49 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=31.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|+-+.|+|++|+|||||+.-+..-.- . ..+.++||..
T Consensus 1262 I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p-----~~G~I~IDG~ 1301 (1622)
T PLN03130 1262 ISPSEKVGIVGRTGAGKSSMLNALFRIVE--L-----ERGRILIDGC 1301 (1622)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCcCC--C-----CCceEEECCE
Confidence 88999999999999999999987775432 1 2456777764
No 387
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.50 E-value=0.00075 Score=69.21 Aligned_cols=40 Identities=28% Similarity=0.462 Sum_probs=30.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|+.+.|.|++|+|||||+.-++.... + ..+.++++..
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p-----~~G~I~idg~ 519 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYT--P-----QHGQVLVDGV 519 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC--C-----CCceEEECCE
Confidence 78999999999999999999997775432 1 2345666653
No 388
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.50 E-value=0.0017 Score=57.25 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 889999999999999999999977753
No 389
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.50 E-value=0.00085 Score=58.75 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+|+++.|.|++|+|||||+.-++..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 889999999999999999999977754
No 390
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.50 E-value=0.0014 Score=64.97 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=35.3
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-++-... .....+.+.|++++++++.+||+++|-..
T Consensus 173 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 218 (529)
T PRK15134 173 TRPELLIADEPTTALDV---------SVQAQILQLLRELQQELNMGLLFITHNLS 218 (529)
T ss_pred cCCCEEEEcCCCCccCH---------HHHHHHHHHHHHHHHhcCCeEEEEcCcHH
Confidence 47999999987765433 45556778888888888999999988644
No 391
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.49 E-value=0.001 Score=63.36 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
..+.|+|+||+|||+++..++...... +.+..++|+++...
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~----~~~~~~v~in~~~~ 96 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEI----AVKVVYVYINCQID 96 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh----cCCcEEEEEECCcC
Confidence 346899999999999999999876431 11367889987543
No 392
>PRK08233 hypothetical protein; Provisional
Probab=97.49 E-value=0.00048 Score=57.96 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+-++.|.|+|||||||||.+++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999764
No 393
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00095 Score=57.21 Aligned_cols=27 Identities=30% Similarity=0.520 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+|++..|.||+|||||||+..++-+
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~ 53 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGH 53 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999999988743
No 394
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.49 E-value=0.00066 Score=66.85 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
-+++|+++.|.|++|+|||||+.-++.
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 52 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSG 52 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999999999997774
No 395
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.48 E-value=0.00091 Score=66.93 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+.+.|.|++|+|||||+.-++...
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 7899999999999999999998776543
No 396
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00084 Score=65.28 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
-+++|+++.|.|++|+|||||+.-++.
T Consensus 46 sI~~GEivgIiGpNGSGKSTLLkiLaG 72 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTLSNLIAG 72 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 388999999999999999999997774
No 397
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.47 E-value=0.00081 Score=67.49 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+.+.|.|++|+|||||+.-++..
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccC
Confidence 789999999999999999999877643
No 398
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.47 E-value=0.0009 Score=66.66 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+.+.|.|++|+|||||+.-++.
T Consensus 346 i~~G~~~aivG~sGsGKSTL~~ll~g 371 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTG 371 (547)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999986664
No 399
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.0021 Score=57.61 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 30 IYQSKVTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 889999999999999999999988754
No 400
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.46 E-value=0.0002 Score=70.25 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=58.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEeCCC
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPT 184 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 184 (357)
++|+||||+|||+++..++... +.+.++++... +..... + .
T Consensus 91 iLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~------~~~~~~-----------------g-------~ 131 (495)
T TIGR01241 91 VLLVGPPGTGKTLLAKAVAGEA---------GVPFFSISGSD------FVEMFV-----------------G-------V 131 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---------CCCeeeccHHH------HHHHHh-----------------c-------c
Confidence 8999999999999999988654 24555554321 111000 0 0
Q ss_pred CHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCC----CCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 185 SLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR----APGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 185 ~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~----~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
....+..++.. .....+.+|+||.+..+........ ......+..++..+..+....++.||.+++-
T Consensus 132 ~~~~l~~~f~~----a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~ 202 (495)
T TIGR01241 132 GASRVRDLFEQ----AKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNR 202 (495)
T ss_pred cHHHHHHHHHH----HHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCC
Confidence 11122233322 2335678999999998875422111 1122334444444544445556666665543
No 401
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.001 Score=59.00 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+|+++.|.|++|+|||||+.-++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999999977753
No 402
>PLN03232 ABC transporter C family member; Provisional
Probab=97.46 E-value=0.00054 Score=75.72 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|+-+.|+|++|+|||||+.-+..-.- + ..+-++||..
T Consensus 1259 I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p-----~~G~I~IdG~ 1298 (1495)
T PLN03232 1259 VSPSEKVGVVGRTGAGKSSMLNALFRIVE--L-----EKGRIMIDDC 1298 (1495)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCc--C-----CCceEEECCE
Confidence 78999999999999999999997775432 1 2446777764
No 403
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.46 E-value=0.0029 Score=53.32 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=75.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCC---chHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF---TSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~---~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
....+.|++.+|.|||+.|+-++.+++. .+.+|+++-+--.- ......+... . +.... ....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g------~G~~V~ivQFlKg~~~~GE~~~l~~l~-~----v~~~~----~g~~ 85 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG------HGKKVGVVQFIKGAWSTGERNLLEFGG-G----VEFHV----MGTG 85 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH------CCCeEEEEEEecCCCccCHHHHHhcCC-C----cEEEE----CCCC
Confidence 3448899999999999999999999983 46899988764321 1111111100 0 00000 0011
Q ss_pred eEEeCCCC---HHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecc
Q 035774 178 ILVLQPTS---LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQ 254 (357)
Q Consensus 178 i~~~~~~~---~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q 254 (357)
+.+..... .......++.+...+.....++||+|.+.......+ -...+++..|+. +.-++-||+|.+
T Consensus 86 ~~~~~~~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gl-------i~~eevi~~L~~--rp~~~evVlTGR 156 (191)
T PRK05986 86 FTWETQDRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGY-------LDVEEVLEALNA--RPGMQHVVITGR 156 (191)
T ss_pred CcccCCCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCC-------ccHHHHHHHHHc--CCCCCEEEEECC
Confidence 11111111 122333455566667778899999999987765422 223345566653 556788999865
No 404
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.46 E-value=0.0012 Score=59.37 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=23.6
Q ss_pred CCC-CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 99 VPF-GVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 99 i~~-G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
+++ ..+++|.|++|+|||+++..++....
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 444 34899999999999999999976653
No 405
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=97.46 E-value=0.00092 Score=61.39 Aligned_cols=56 Identities=30% Similarity=0.325 Sum_probs=46.7
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
...+.||+..+|.++. +-+|+-..|.|++|+|||+++.+++.+.- ..-++|+-+-+
T Consensus 138 ~~pL~TGirvID~l~P--i~kGqr~~I~G~~G~GKT~L~~~Iak~~~--------~dvvVyv~iGE 193 (369)
T cd01134 138 NEPLLTGQRVLDTLFP--VVKGGTAAIPGPFGCGKTVIQQSLSKYSN--------SDIVIYVGCGE 193 (369)
T ss_pred CCchhccchhhhcccc--ccCCCEEEEECCCCCChHHHHHHHHhCCC--------CCEEEEEEeCC
Confidence 5679999999999987 88999999999999999999999887542 14577777643
No 406
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.0017 Score=57.85 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=34.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
++.+.-+.++|+||+|||.|+..++..++. . +.+|+|+.+-
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~---~---g~sv~f~~~~ 142 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNELLK---A---GISVLFITAP 142 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHHH---c---CCeEEEEEHH
Confidence 447888999999999999999999998883 2 5899999873
No 407
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.45 E-value=0.0015 Score=63.44 Aligned_cols=29 Identities=31% Similarity=0.253 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|++...-++++||||+|||.+|..+|...
T Consensus 255 gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 255 GLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 57777789999999999999999888765
No 408
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.0011 Score=67.08 Aligned_cols=44 Identities=32% Similarity=0.432 Sum_probs=34.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+++|.++.+.||+|+||||.+..++...... .| ..+|.+++++.
T Consensus 182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~--~G--~kkV~lit~Dt 225 (767)
T PRK14723 182 LAQGGVLALVGPTGVGKTTTTAKLAARCVAR--EG--ADQLALLTTDS 225 (767)
T ss_pred cCCCeEEEEECCCCCcHHHHHHHHHhhHHHH--cC--CCeEEEecCcc
Confidence 4468899999999999999999999876431 22 25788888763
No 409
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.44 E-value=0.002 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=22.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLS 123 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia 123 (357)
.+.|+.+++.||+|+|||+|...+-
T Consensus 25 ~~~getlvllgpsgagkssllr~ln 49 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHH
Confidence 6889999999999999999987543
No 410
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.44 E-value=0.00086 Score=65.85 Aligned_cols=45 Identities=18% Similarity=0.105 Sum_probs=32.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|..++-... .....+.+.|++++++ +.+||+++|-..
T Consensus 152 ~~p~lllLDEPt~~LD~---------~~~~~l~~~l~~~~~~-g~tvii~tH~~~ 196 (490)
T PRK10938 152 SEPDLLILDEPFDGLDV---------ASRQQLAELLASLHQS-GITLVLVLNRFD 196 (490)
T ss_pred cCCCEEEEcCCcccCCH---------HHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 47899999987755432 4455677788888765 889999988643
No 411
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.44 E-value=0.0026 Score=52.07 Aligned_cols=128 Identities=16% Similarity=0.144 Sum_probs=70.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC---CchHHHHHHHhccCchhhcccchHHHhhcCeEE
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST---FTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~---~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (357)
++.|+.++|.|||+.|.-++..++. .+.+|+++.+--. .....+.+.... + ..+. ......+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~------~g~~v~~vQFlKg~~~~gE~~~l~~l~~-v-~~~~-------~g~~~~~ 68 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALG------HGYRVGVVQFLKGGWKYGELKALERLPN-I-EIHR-------MGRGFFW 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEEEeCCCCccCHHHHHHhCCC-c-EEEE-------CCCCCcc
Confidence 7788888899999999999999984 3689999765322 111111111100 0 0000 0001111
Q ss_pred eCCCCHH---HHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 181 LQPTSLS---EFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 181 ~~~~~~~---~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
......+ .....+......+.....++||+|.+........- ...++...|++ +--++.||+|.+.
T Consensus 69 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli-------~~~~v~~ll~~--rp~~~evIlTGr~ 137 (159)
T cd00561 69 TTENDEEDIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLL-------DVEEVVDLLKA--KPEDLELVLTGRN 137 (159)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCC-------CHHHHHHHHHc--CCCCCEEEEECCC
Confidence 1111111 22233444555666678999999999987554221 22334555543 4447888888643
No 412
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00082 Score=66.28 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (506)
T PRK13549 28 VRAGEIVSLCGENGAGKSTLMKVLSG 53 (506)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999997774
No 413
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=97.43 E-value=0.00073 Score=65.57 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=47.4
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||+..+|.++. +.+|+=..|.|++|+|||+|+++++.+... .+..|+|+-.-+
T Consensus 142 ~~pl~TGi~aID~l~p--igrGQr~~I~g~~g~GKt~Lal~~i~~~~~------~dv~~V~~~IGe 199 (501)
T TIGR00962 142 HEPLQTGIKAIDAMIP--IGRGQRELIIGDRQTGKTAVAIDTIINQKD------SDVYCVYVAIGQ 199 (501)
T ss_pred CceeccCCceeeccCC--cccCCEEEeecCCCCCccHHHHHHHHhhcC------CCeEEEEEEccC
Confidence 5689999999999987 889999999999999999998777766542 245568887644
No 414
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.42 E-value=0.0012 Score=65.35 Aligned_cols=40 Identities=23% Similarity=0.187 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.-+.|+|++|+|||.|+..++..+... ..+.+|+|++++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~----~~g~~V~Yitaee 354 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL----YPGTRVRYVSSEE 354 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEeeHHH
Confidence 458999999999999999999877531 1147899998854
No 415
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.00083 Score=65.96 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++-
T Consensus 21 i~~Ge~~~liG~nGsGKSTLl~~l~G 46 (491)
T PRK10982 21 VRPHSIHALMGENGAGKSTLLKCLFG 46 (491)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 88999999999999999999997764
No 416
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.42 E-value=0.013 Score=54.93 Aligned_cols=94 Identities=14% Similarity=0.197 Sum_probs=57.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCch---HHHHHHHhccCchhhcccchHHHhhc
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS---RRMIEMGASSFPEIFHSKGMAQEMAG 176 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~---~rl~~~~~~~~~~~~~~~~~~~~~~~ 176 (357)
.+-.+++++|--|+||||.|-.+|..... .+.+|+.++++- +.+ +.|++++.. .
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk------~~~kvllVaaD~-~RpAA~eQL~~La~q--------------~-- 154 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKK------KGKKVLLVAADT-YRPAAIEQLKQLAEQ--------------V-- 154 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHH------cCCceEEEeccc-CChHHHHHHHHHHHH--------------c--
Confidence 34678999999999999999999988864 258999998874 333 333333322 1
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccc
Q 035774 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216 (357)
Q Consensus 177 ~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l 216 (357)
++-++...+..+..++..+.....+....++||||....+
T Consensus 155 ~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl 194 (451)
T COG0541 155 GVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRL 194 (451)
T ss_pred CCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 1222222222223334444444445567888888876654
No 417
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.42 E-value=0.0041 Score=56.35 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 60 i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 60 IEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999997764
No 418
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=97.41 E-value=0.00081 Score=64.98 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=47.2
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||+..+|.++. +.+|+=..|.|++|+|||+|++.++.+... .+..|+|.-.-+
T Consensus 143 ~epl~TGIkaID~l~p--igrGQR~~I~g~~g~GKt~Lal~~i~~~~~------~dv~~V~~~IGe 200 (502)
T PRK13343 143 TEPLQTGIKVVDALIP--IGRGQRELIIGDRQTGKTAIAIDAIINQKD------SDVICVYVAIGQ 200 (502)
T ss_pred CcccccCCceeccccc--cccCCEEEeeCCCCCCccHHHHHHHHhhcC------CCEEEEEEEecc
Confidence 5689999999999997 889999999999999999998777766532 235568877644
No 419
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.41 E-value=0.001 Score=62.70 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|+.+..-++|+||||+|||+++..++...
T Consensus 152 g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 152 GIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 46666669999999999999999988754
No 420
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.41 E-value=0.00059 Score=64.88 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=44.5
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
..+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++.+... ...++.+..|..
T Consensus 138 ~~l~TGiraID~ll~--I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-------~~gvI~~iGerg 194 (432)
T PRK06793 138 DVFETGIKSIDSMLT--IGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-------DINVISLVGERG 194 (432)
T ss_pred hccCCCCEEEeccce--ecCCcEEEEECCCCCChHHHHHHHhccCCC-------CeEEEEeCCCCc
Confidence 468899999999875 889999999999999999999888765421 244555555543
No 421
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.0014 Score=64.64 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~G 311 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFG 311 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999997774
No 422
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.40 E-value=0.00044 Score=65.72 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=39.3
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++.+.
T Consensus 143 ~~~l~TGi~vid~l~~--i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 143 ETPLSLGVRVIDGLLT--CGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred CCCCcCCcceeeeeEE--ecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 5689999999999965 8999999999999999999988777654
No 423
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=97.40 E-value=0.001 Score=63.48 Aligned_cols=57 Identities=28% Similarity=0.205 Sum_probs=47.2
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.+.+.||+..+|-++. +-+|+=+.|.|++|+|||+|+.+++.+..... ..-++|.-.
T Consensus 124 ~e~l~TGiraID~l~p--ig~GQr~~If~~~G~GKt~L~~~~~~~~~~~~-----~~v~V~alI 180 (461)
T TIGR01039 124 VEILETGIKVIDLLAP--YAKGGKIGLFGGAGVGKTVLIQELINNIAKEH-----GGYSVFAGV 180 (461)
T ss_pred ccccccCceeecccCC--cccCCEEEeecCCCCChHHHHHHHHHHHHhcC-----CCeEEEEEe
Confidence 5679999999999987 78999999999999999999999999886421 235666554
No 424
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.40 E-value=0.00051 Score=68.14 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=34.1
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-... .....+...|++++++++.+||+++|-
T Consensus 442 ~~p~llllDEPt~~LD~---------~~~~~l~~~l~~~~~~~~~tvi~vsHd 485 (529)
T PRK15134 442 LKPSLIILDEPTSSLDK---------TVQAQILALLKSLQQKHQLAYLFISHD 485 (529)
T ss_pred CCCCEEEeeCCccccCH---------HHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 47899999987765432 445567788888988889999999885
No 425
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.40 E-value=0.0011 Score=63.24 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=38.5
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
...+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++.+.
T Consensus 138 ~~~l~tgi~aid~l~~--i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 138 DEVFSVGVKSIDGLLT--CGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred ceeccchhHHhhhcce--ecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 4568899999999965 8999999999999999999998777554
No 426
>PTZ00243 ABC transporter; Provisional
Probab=97.39 E-value=0.0008 Score=74.54 Aligned_cols=40 Identities=23% Similarity=0.389 Sum_probs=30.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|+.+.|+|++|+|||||+.-+..-.-. ..+.++||..
T Consensus 1333 I~~GekVaIVGrTGSGKSTLl~lLlrl~~p-------~~G~I~IDG~ 1372 (1560)
T PTZ00243 1333 IAPREKVGIVGRTGSGKSTLLLTFMRMVEV-------CGGEIRVNGR 1372 (1560)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-------CCcEEEECCE
Confidence 779999999999999999999977654321 2345677754
No 427
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.39 E-value=0.00026 Score=59.32 Aligned_cols=40 Identities=25% Similarity=0.210 Sum_probs=33.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
++|.++.|.|.||+||||++..++...... +..+.+++.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~------g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREA------GYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEEcCc
Confidence 579999999999999999999999876421 3578889875
No 428
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.39 E-value=0.002 Score=59.70 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=34.4
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
..++++|-|.-+.-.. ...-.+|+..|+.|-+++|+++++++|-
T Consensus 174 n~P~lLIADEPTTALD---------VtvQaQIL~Ll~~Lq~~~gMa~lfITHD 217 (534)
T COG4172 174 NEPDLLIADEPTTALD---------VTVQAQILDLLKELQAELGMAILFITHD 217 (534)
T ss_pred CCCCeEeecCCcchhh---------hhhHHHHHHHHHHHHHHhCcEEEEEecc
Confidence 4688999887665432 2344578999999999999999999984
No 429
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.39 E-value=0.0017 Score=58.10 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.|++|+|||||+.-++..
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 789999999999999999999987753
No 430
>PRK06820 type III secretion system ATPase; Validated
Probab=97.39 E-value=0.00053 Score=65.37 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=38.1
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
.+.+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++..
T Consensus 144 ~~~l~TGi~aID~l~~--i~~Gqri~I~G~sG~GKStLl~~I~~~ 186 (440)
T PRK06820 144 EQMLTTGIRAIDGILS--CGEGQRIGIFAAAGVGKSTLLGMLCAD 186 (440)
T ss_pred hhhccCCCceecceEE--ecCCCEEEEECCCCCChHHHHHHHhcc
Confidence 4579999999999976 899999999999999999998766643
No 431
>PRK13768 GTPase; Provisional
Probab=97.39 E-value=0.0008 Score=59.97 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=32.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
.++.|.|++|+||||++.+++...+.. +.+|++|+.+..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~------g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ------GYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc------CCceEEEECCCc
Confidence 478999999999999999999877642 578999988753
No 432
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.38 E-value=0.0024 Score=62.82 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=77.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCC----CCeEEEEeCCCCCchHHHHHHHhcc-CchhhcccchHH
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGL----DGGVIYIDVESTFTSRRMIEMGASS-FPEIFHSKGMAQ 172 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~----~~~vl~i~~e~~~~~~rl~~~~~~~-~~~~~~~~~~~~ 172 (357)
.+++|+-++|.|++|+|||+|...++- +-|-..|.. +...+|+.-..-++...+++..-.- ....+..+...+
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaG--LWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~ 492 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhc--cCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHH
Confidence 389999999999999999999997774 333222221 3457888877767766666554220 000111111111
Q ss_pred H--------hhcCeEEeCCC----CHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHH
Q 035774 173 E--------MAGRILVLQPT----SLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240 (357)
Q Consensus 173 ~--------~~~~i~~~~~~----~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~ 240 (357)
. ..+++.-.+.+ +..+. +.+.-.+-. -++++.+|+|..++-.... .-..|.+
T Consensus 493 vL~~vgL~~L~~rl~~~~~W~~vLS~GEq-QRlafARil--L~kP~~v~LDEATsALDe~-------------~e~~l~q 556 (604)
T COG4178 493 VLHKVGLGDLAERLDEEDRWDRVLSGGEQ-QRLAFARLL--LHKPKWVFLDEATSALDEE-------------TEDRLYQ 556 (604)
T ss_pred HHHHcCcHHHHHHHhccCcHhhhcChhHH-HHHHHHHHH--HcCCCEEEEecchhccChH-------------HHHHHHH
Confidence 0 11111111111 11111 111111222 3689999999988655431 1123455
Q ss_pred HHHH--cCCeEEEeccccc
Q 035774 241 LAEF--SRIPIVVTNQVRP 257 (357)
Q Consensus 241 la~~--~~~~vv~~~q~~~ 257 (357)
+.++ .+++||-+.|-++
T Consensus 557 ~l~~~lp~~tvISV~Hr~t 575 (604)
T COG4178 557 LLKEELPDATVISVGHRPT 575 (604)
T ss_pred HHHhhCCCCEEEEeccchh
Confidence 5555 7999999988644
No 433
>PRK05922 type III secretion system ATPase; Validated
Probab=97.38 E-value=0.00076 Score=64.11 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=38.7
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.+.||+..+|.++. +.+|+-+.|.|++|+|||+|+..++...
T Consensus 138 ~e~l~TGIr~ID~ll~--I~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 138 QEIFPTGIKAIDAFLT--LGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred ceecCCCceeecceEE--EcCCcEEEEECCCCCChHHHHHHHhccC
Confidence 4579999999999876 8999999999999999999987777543
No 434
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.37 E-value=0.00024 Score=55.45 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++.|+|+|||||||+|..++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999764
No 435
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=97.36 E-value=0.001 Score=73.77 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=31.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|+.+.|+|++|+|||||+.-+..-.- . ..+.++||..
T Consensus 1309 I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~-----~~G~I~IdG~ 1348 (1522)
T TIGR00957 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINE--S-----AEGEIIIDGL 1348 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcc--C-----CCCeEEECCE
Confidence 88999999999999999999997765432 1 2446777754
No 436
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.36 E-value=0.0021 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
=+.|+|+||+||||+++.++-...
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHH
Confidence 368999999999999999997664
No 437
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.35 E-value=0.0017 Score=60.43 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=36.4
Q ss_pred CCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 035774 85 PTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128 (357)
Q Consensus 85 ~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~ 128 (357)
.+|...+|.++. +-+|+=.+|.|+||+|||+++..++.+...
T Consensus 118 ~~~~RvID~l~P--iGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAP--IGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheee--cCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 677888999886 558889999999999999999999987754
No 438
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.35 E-value=0.0011 Score=73.27 Aligned_cols=39 Identities=33% Similarity=0.365 Sum_probs=31.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|+-+.|+|++|+|||||+.-++.-.. . .+.++||..
T Consensus 1242 I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~-----~G~I~IdG~ 1280 (1490)
T TIGR01271 1242 VEGGQRVGLLGRTGSGKSTLLSALLRLLS---T-----EGEIQIDGV 1280 (1490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhcC---C-----CcEEEECCE
Confidence 78999999999999999999998886542 1 345677754
No 439
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.35 E-value=0.0024 Score=55.89 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=62.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEeCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQP 183 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (357)
-++|.|++|||||+|++.++..... ....+|+-++.. . ....+. +..+ ++...
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~-------~f~~I~l~t~~~-n-~~~~~~-----------------i~p~-~i~~~ 67 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH-------KFDHIFLITPEY-N-NEYYKY-----------------IWPD-HIFKV 67 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc-------cCCEEEEEecCC-c-hhhhhh-----------------cchh-hcccc
Confidence 4789999999999999999977543 234555554421 1 100000 0000 11112
Q ss_pred CCHHHHHHHHHH----HHHHhhh------cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEec
Q 035774 184 TSLSEFTESLEK----IKVSLLQ------NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTN 253 (357)
Q Consensus 184 ~~~~~~~~~l~~----l~~~~~~------~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~ 253 (357)
.+.+++...+.. +.+.... ...-+||+|.++.- ..+.+ .+..+-.-.+.+++.++++.
T Consensus 68 ~~~e~le~~l~~~k~~I~k~~~k~~~~k~~~~~LiIlDD~~~~--------~~k~~----~l~~~~~~gRH~~is~i~l~ 135 (241)
T PF04665_consen 68 FDKEELEYILIRQKEKIEKYIKKSPQKKNNPRFLIILDDLGDK--------KLKSK----ILRQFFNNGRHYNISIIFLS 135 (241)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhcccCCCCCeEEEEeCCCCc--------hhhhH----HHHHHHhcccccceEEEEEe
Confidence 223333333222 2222221 12468999987531 01222 23444456778999999999
Q ss_pred cccccCC
Q 035774 254 QVRPQSH 260 (357)
Q Consensus 254 q~~~~~~ 260 (357)
|......
T Consensus 136 Q~~~~lp 142 (241)
T PF04665_consen 136 QSYFHLP 142 (241)
T ss_pred eecccCC
Confidence 9876543
No 440
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.35 E-value=0.00059 Score=64.79 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=36.8
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
..+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++..
T Consensus 119 ~~~~tGi~~iD~l~~--i~~Gqri~I~G~sG~GKTtLl~~i~~~ 160 (413)
T TIGR03497 119 DPLETGIKAIDGLLT--IGKGQRVGIFAGSGVGKSTLLGMIARN 160 (413)
T ss_pred hhccccceeeeeEEE--EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 468899999999965 899999999999999999998766643
No 441
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.35 E-value=0.0014 Score=64.25 Aligned_cols=140 Identities=18% Similarity=0.145 Sum_probs=78.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCC----CCCCeEEEEeCCCCC--chHHHHHHHhccCchhhcccchH
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYG----GLDGGVIYIDVESTF--TSRRMIEMGASSFPEIFHSKGMA 171 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~g----g~~~~vl~i~~e~~~--~~~rl~~~~~~~~~~~~~~~~~~ 171 (357)
.+.+|+-+.|.||+|+|||||+.-++....- ..| |.+.++-||+-+... ....+.+......+... +..+
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~--e~~~ 419 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD--EQEV 419 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc--HHHH
Confidence 5889999999999999999999988644321 122 234678899876521 22223332222221110 1222
Q ss_pred HHhhcCeEEeCC--------CCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q 035774 172 QEMAGRILVLQP--------TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAE 243 (357)
Q Consensus 172 ~~~~~~i~~~~~--------~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~ 243 (357)
...+.++.+... .+..+-..+ ....+.-.++.++|+|.-+..... +-...|.....
T Consensus 420 r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl---~La~ll~~~pNvLiLDEPTNhLDi-------------~s~~aLe~aL~ 483 (530)
T COG0488 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARL---LLAKLLLQPPNLLLLDEPTNHLDI-------------ESLEALEEALL 483 (530)
T ss_pred HHHHHHcCCChHHHhCchhhcCHhHHHHH---HHHHHhccCCCEEEEcCCCccCCH-------------HHHHHHHHHHH
Confidence 333444333211 111111111 111222358999999987755432 12455777778
Q ss_pred HcCCeEEEeccccc
Q 035774 244 FSRIPIVVTNQVRP 257 (357)
Q Consensus 244 ~~~~~vv~~~q~~~ 257 (357)
+|.-+||+++|-..
T Consensus 484 ~f~Gtvl~VSHDr~ 497 (530)
T COG0488 484 DFEGTVLLVSHDRY 497 (530)
T ss_pred hCCCeEEEEeCCHH
Confidence 89999999998643
No 442
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.34 E-value=0.0025 Score=63.13 Aligned_cols=45 Identities=7% Similarity=0.018 Sum_probs=34.8
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-++-... .....+.+.|++++++++.+||+++|-.
T Consensus 444 ~~p~lLllDEPt~~LD~---------~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 488 (520)
T TIGR03269 444 KEPRIVILDEPTGTMDP---------ITKVDVTHSILKAREEMEQTFIIVSHDM 488 (520)
T ss_pred cCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHHHcCcEEEEEeCCH
Confidence 47899999987765432 4455678888888888899999998853
No 443
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.34 E-value=0.0006 Score=55.49 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=30.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+.+.|++|+|||+++.+++...... +.++++++.+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~------g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRAR------GKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC------CCEEEEEEeCC
Confidence 6789999999999999999877532 47899998875
No 444
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.34 E-value=0.0018 Score=61.96 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+..+.|+|++|+|||.|+..++..+... ..+..++|++.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~----~~~~~v~yi~~~ 175 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILEN----NPNAKVVYVSSE 175 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh----CCCCcEEEEEHH
Confidence 4578999999999999999888776532 124789999865
No 445
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.33 E-value=0.00045 Score=65.58 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.+|+...|.||+|||||||+.-+.--.
T Consensus 359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred ecCCceEEEECCCCccHHHHHHHHHccc
Confidence 7789999999999999999999777443
No 446
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=97.33 E-value=0.0014 Score=63.05 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=47.3
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||+..+|.++. +-+|+=..|.|++|+|||++++..+.+... .+..|+|...-.
T Consensus 124 ~epL~TGIkaID~l~p--igrGQR~~Ifg~~gtGKT~lal~~I~~q~~------~dv~~V~~~IGe 181 (507)
T PRK07165 124 NEQLYTGIIAIDLLIP--IGKGQRELIIGDRQTGKTHIALNTIINQKN------TNVKCIYVAIGQ 181 (507)
T ss_pred CceeecCchhhhhcCC--cccCCEEEeecCCCCCccHHHHHHHHHhcC------CCeEEEEEEccC
Confidence 5689999999999987 789999999999999999998766655532 245678887644
No 447
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.0014 Score=57.79 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=32.5
Q ss_pred CeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccccc
Q 035774 204 QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQ 258 (357)
Q Consensus 204 ~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~ 258 (357)
.++++..|.--+-... ..=++++-.|.++.+|.+++|+.++|...+
T Consensus 146 ~P~LLLmDEPLaSLD~---------~RK~EilpylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 146 APELLLMDEPLASLDL---------PRKREILPYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred CCCeeeecCchhhccc---------chhhHHHHHHHHHHHhcCCCEEEEecCHHH
Confidence 5788888853322111 122457888999999999999999997554
No 448
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.33 E-value=0.0025 Score=61.63 Aligned_cols=40 Identities=20% Similarity=0.112 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.-+.|+|++|+|||.|+..++...... ..+..|+|++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~----~~~~~v~yv~~~~ 181 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESN----FSDLKVSYMSGDE 181 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEEHHH
Confidence 347899999999999998877654321 1257899998854
No 449
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.32 E-value=0.0018 Score=64.87 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+.+.|.|++||||||++.-++.-.
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~ 379 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLY 379 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 8999999999999999999999777544
No 450
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.32 E-value=0.00072 Score=64.17 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=38.4
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
.+.+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++.
T Consensus 143 ~e~l~TGi~aID~ll~--i~~GqrigI~G~sG~GKSTLL~~I~~ 184 (444)
T PRK08972 143 TEPLDVGVRAINAMLT--VGKGQRMGLFAGSGVGKSVLLGMMTR 184 (444)
T ss_pred CCcccccceeecceEE--EcCCCEEEEECCCCCChhHHHHHhcc
Confidence 5689999999999976 89999999999999999999987774
No 451
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0036 Score=61.83 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=69.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
++..| -++|.|++|+|||.|+..++...-.+ .-..|.|++++.. ...+
T Consensus 428 v~~~~-~Ill~G~~GsGKT~L~kal~~~~~k~-----~~~hv~~v~Cs~l-~~~~------------------------- 475 (952)
T KOG0735|consen 428 VFRHG-NILLNGPKGSGKTNLVKALFDYYSKD-----LIAHVEIVSCSTL-DGSS------------------------- 475 (952)
T ss_pred ccccc-cEEEeCCCCCCHhHHHHHHHHHhccc-----cceEEEEEechhc-cchh-------------------------
Confidence 35555 56899999999999999999887642 2356778887541 1111
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCC---hHHHHHHH-HHHHHHHHHcC-CeEEEe
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG---QHPLSWHI-SLITSLAEFSR-IPIVVT 252 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r---~~~~~~i~-~~Lk~la~~~~-~~vv~~ 252 (357)
.+.+...+..+-.....+.+.+||+|.+..+.......+... .+.+..++ ...+.+.+..+ +++|++
T Consensus 476 --------~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat 547 (952)
T KOG0735|consen 476 --------LEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIAT 547 (952)
T ss_pred --------HHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEe
Confidence 122223333333334467899999999999987422221111 12344444 33344444434 467776
Q ss_pred ccc
Q 035774 253 NQV 255 (357)
Q Consensus 253 ~q~ 255 (357)
.|-
T Consensus 548 ~qe 550 (952)
T KOG0735|consen 548 GQE 550 (952)
T ss_pred chh
Confidence 654
No 452
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.30 E-value=0.0014 Score=60.47 Aligned_cols=94 Identities=13% Similarity=0.175 Sum_probs=56.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCch---------HHHHHHHhccCchhhcccchH
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS---------RRMIEMGASSFPEIFHSKGMA 171 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~---------~rl~~~~~~~~~~~~~~~~~~ 171 (357)
..-++.|.|+||+|||||+..++..... .+.+|..++.+..-+. .|+.+..
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~------~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~-------------- 114 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIE------QGHKVAVLAVDPSSTRTGGSILGDKTRMERLS-------------- 114 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEEeCCCccccchhhhchHhHHHhhc--------------
Confidence 3458999999999999999999877753 1467888877653221 1111110
Q ss_pred HHhhcCeEEeCCC---CHHHHHHHHHHHHHHhhhcCeeEEEEeccccc
Q 035774 172 QEMAGRILVLQPT---SLSEFTESLEKIKVSLLQNQVKLLVIDSMEAL 216 (357)
Q Consensus 172 ~~~~~~i~~~~~~---~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l 216 (357)
....+++.... ....+...+......+...+.++|+||....-
T Consensus 115 --~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~ 160 (332)
T PRK09435 115 --RHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVG 160 (332)
T ss_pred --CCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCc
Confidence 01122332211 22233444555555566678999999987744
No 453
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0028 Score=61.39 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+.+.|.|++|+||||+..-++--
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~ 370 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGF 370 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 889999999999999999999866643
No 454
>PRK12678 transcription termination factor Rho; Provisional
Probab=97.30 E-value=0.0021 Score=62.66 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=39.9
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~ 128 (357)
..+.||+..+|-++. +-+|+=.+|.|+||+|||+|+..|+...+.
T Consensus 398 e~~~~giRvIDll~P--IGkGQR~LIvgpp~aGKTtLL~~IAn~i~~ 442 (672)
T PRK12678 398 EPKKLTTRVIDLIMP--IGKGQRGLIVSPPKAGKTTILQNIANAITT 442 (672)
T ss_pred Ccccccceeeeeecc--cccCCEeEEeCCCCCCHHHHHHHHHHHHhh
Confidence 478999999999987 778999999999999999999998876653
No 455
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0041 Score=58.30 Aligned_cols=104 Identities=24% Similarity=0.318 Sum_probs=63.1
Q ss_pred HHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHH-HHHhccCchhhcccc
Q 035774 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMI-EMGASSFPEIFHSKG 169 (357)
Q Consensus 91 LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~-~~~~~~~~~~~~~~~ 169 (357)
|...+.|+.|.. +.|+|+||+|||..+..++...-.... +..++||.+...-.+.++. ++...
T Consensus 33 l~~~~~~~~p~n--~~iyG~~GTGKT~~~~~v~~~l~~~~~----~~~~~yINc~~~~t~~~i~~~i~~~---------- 96 (366)
T COG1474 33 LAPALRGERPSN--IIIYGPTGTGKTATVKFVMEELEESSA----NVEVVYINCLELRTPYQVLSKILNK---------- 96 (366)
T ss_pred HHHHhcCCCCcc--EEEECCCCCCHhHHHHHHHHHHHhhhc----cCceEEEeeeeCCCHHHHHHHHHHH----------
Confidence 666677776665 888999999999999998887753211 1238999987754443332 22221
Q ss_pred hHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhh-cCeeEEEEeccccccCC
Q 035774 170 MAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ-NQVKLLVIDSMEALVPG 219 (357)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~-~~~~lvvIDsl~~l~~~ 219 (357)
+ . --+.+.....+++..+.+.+.. ...=+||+|.+..+...
T Consensus 97 ----~-~----~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~ 138 (366)
T COG1474 97 ----L-G----KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDK 138 (366)
T ss_pred ----c-C----CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccc
Confidence 0 0 1111112223334444444443 45678899999998764
No 456
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=97.29 E-value=0.0015 Score=63.04 Aligned_cols=58 Identities=26% Similarity=0.214 Sum_probs=46.5
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||+..+|.++. +-+|+=..|.|++|+|||++++.++.+... .+..|+|.-.-+
T Consensus 143 ~epl~TGI~aID~l~p--igrGQR~~Ifg~~g~GKT~Lal~~I~~q~~------~dv~~V~~~IGe 200 (497)
T TIGR03324 143 TVPLQTGLKVIDALIP--IGRGQRELILGDRQTGKTAIAIDTILNQKG------RNVLCIYCAIGQ 200 (497)
T ss_pred CchhhcCCEEEeccCC--cccCCEEEeecCCCCCHHHHHHHHHHHhcC------CCcEEEEEEecc
Confidence 5689999999999987 789999999999999999998766655431 234578877543
No 457
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.29 E-value=0.0047 Score=53.81 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=26.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~ 128 (357)
+..|+++.|.|++|+|||+++..++....+
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~~~~l 57 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVALITIM 57 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999886654
No 458
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.28 E-value=0.0016 Score=66.90 Aligned_cols=28 Identities=39% Similarity=0.565 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+.+.|.|++|+|||||+.-++...
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999999999777543
No 459
>CHL00176 ftsH cell division protein; Validated
Probab=97.28 E-value=0.00067 Score=68.07 Aligned_cols=33 Identities=33% Similarity=0.317 Sum_probs=25.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.-++|+||||+|||+++..+|... +.+.+++++
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~---------~~p~i~is~ 249 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEA---------EVPFFSISG 249 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---------CCCeeeccH
Confidence 349999999999999999998654 255666654
No 460
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.27 E-value=0.0021 Score=57.64 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=25.8
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
.|+.++..| ...-+.|.|+||+|||||+..++....
T Consensus 101 ~l~~l~~~~--~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 101 LLPYLVRNN--RVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred HHHHHHhCC--CeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 445555322 115789999999999999998886553
No 461
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=97.27 E-value=0.0015 Score=62.47 Aligned_cols=57 Identities=28% Similarity=0.218 Sum_probs=47.6
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.+.+.||+..+|-++. +-+|+=+.|.|++|+|||+|+.+++.+..... ...++|.-.
T Consensus 125 ~~~l~TGiraID~l~p--igkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-----~~v~V~~li 181 (463)
T PRK09280 125 TEILETGIKVIDLLAP--YAKGGKIGLFGGAGVGKTVLIQELINNIAKEH-----GGYSVFAGV 181 (463)
T ss_pred cceeccCCeeecccCC--cccCCEEEeecCCCCChhHHHHHHHHHHHhcC-----CCEEEEEEe
Confidence 4579999999999987 88999999999999999999999999886421 235666654
No 462
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.27 E-value=0.002 Score=71.02 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+.+.|.|++||||||++.-++.-.
T Consensus 1191 i~~G~~vAIVG~SGsGKSTl~~LL~r~y 1218 (1466)
T PTZ00265 1191 CDSKKTTAIVGETGSGKSTVMSLLMRFY 1218 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 8899999999999999999998777654
No 463
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0024 Score=62.05 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=68.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
|+..-.=++++||||||||.||..+|..+ +.=||+..+ ++-+-.
T Consensus 541 Gi~~PsGvLL~GPPGCGKTLlAKAVANEa-----------g~NFisVKG---PELlNk---------------------- 584 (802)
T KOG0733|consen 541 GIDAPSGVLLCGPPGCGKTLLAKAVANEA-----------GANFISVKG---PELLNK---------------------- 584 (802)
T ss_pred CCCCCCceEEeCCCCccHHHHHHHHhhhc-----------cCceEeecC---HHHHHH----------------------
Confidence 46666679999999999999999777544 234666654 222111
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCC-CChHHHHHHHHHHHHHHHHcCCeEEEec
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA-PGQHPLSWHISLITSLAEFSRIPIVVTN 253 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~-~r~~~~~~i~~~Lk~la~~~~~~vv~~~ 253 (357)
|+ ..+-..+.+++. ..+...+.+|+.|.+.+|.+....+.. .....+.+++..|..+-.+.|+.||..+
T Consensus 585 -YV--GESErAVR~vFq----RAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaAT 654 (802)
T KOG0733|consen 585 -YV--GESERAVRQVFQ----RARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAAT 654 (802)
T ss_pred -Hh--hhHHHHHHHHHH----HhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeec
Confidence 00 001112222332 233456899999999999876322221 1234566777777777777888888654
No 464
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.26 E-value=0.0022 Score=61.85 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.-..|+|+||+|||.|+..++...... +.+..|+|++.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~----~~~~~v~yi~~~ 169 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN----EPDLRVMYITSE 169 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEEHH
Confidence 358999999999999999888776532 124689999875
No 465
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.26 E-value=0.0016 Score=67.18 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|+.+..-++++||||+|||+++..+|...
T Consensus 483 g~~~~~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 483 GIRPPKGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 45666668999999999999999998754
No 466
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.25 E-value=0.0073 Score=58.43 Aligned_cols=43 Identities=33% Similarity=0.444 Sum_probs=33.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
..|.++.+.|++|+||||.+..++...... .| ..+|.+++++.
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~--~G--~~kV~LI~~Dt 296 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMR--HG--ASKVALLTTDS 296 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHh--cC--CCeEEEEeCCc
Confidence 457899999999999999999999877532 22 24788888764
No 467
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.25 E-value=0.0028 Score=69.90 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=25.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+.+.|.|++|+|||||+.-++...
T Consensus 408 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 435 (1466)
T PTZ00265 408 LTEGKTYAFVGESGCGKSTILKLIERLY 435 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999998777544
No 468
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.25 E-value=0.0081 Score=51.36 Aligned_cols=25 Identities=36% Similarity=0.699 Sum_probs=22.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+| ++.|.|++|+|||+|+..++.
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 6678 999999999999999987753
No 469
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.24 E-value=0.0021 Score=64.95 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=28.6
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
-|+.+ .+-+++|+++.|.|++|+|||||+.-++..
T Consensus 40 iL~~v-s~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~ 74 (617)
T TIGR00955 40 LLKNV-SGVAKPGELLAVMGSSGAGKTTLMNALAFR 74 (617)
T ss_pred cccCC-EEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 35553 345999999999999999999999977754
No 470
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.24 E-value=0.001 Score=63.40 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=36.7
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
...+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++.
T Consensus 146 ~~~l~TGi~aID~L~~--I~~Gqri~I~G~SGsGKTTLL~~Ia~ 187 (450)
T PRK06002 146 ETGLRTGVRVIDIFTP--LCAGQRIGIFAGSGVGKSTLLAMLAR 187 (450)
T ss_pred eEEcCCCcEEeeeece--ecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578899999999873 99999999999999999999876653
No 471
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.23 E-value=0.0011 Score=63.47 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=37.9
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
.+.+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++..
T Consensus 144 ~e~l~TGi~~iD~l~~--i~~Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 144 REILSTGVRSIDGLLT--VGKGQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred cccccceeeeeeeccc--cCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999965 899999999999999999998766644
No 472
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=97.23 E-value=0.0016 Score=62.46 Aligned_cols=57 Identities=28% Similarity=0.336 Sum_probs=47.4
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.+.+.||+..+|-++. +-+|+=+.|.|++|+|||+|+..++.+...+. ...++|.-.
T Consensus 124 ~e~l~TGir~ID~l~p--igkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~-----~dv~V~~li 180 (461)
T PRK12597 124 TEILETGIKVIDLLCP--IAKGGKTGLFGGAGVGKTVLMMELIFNISKQH-----SGSSVFAGV 180 (461)
T ss_pred CcceecCCeeecccCc--cccCCEEEeecCCCCChhHHHHHHHHHHHhhC-----CCEEEEEcC
Confidence 5689999999999987 88999999999999999999999999887421 245566544
No 473
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.22 E-value=0.00095 Score=63.71 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=38.1
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
.+.+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++.
T Consensus 149 ~~~l~TGi~aID~l~~--I~~GqrigI~G~sG~GKSTLl~~I~g 190 (451)
T PRK05688 149 SEPLDVGIRSINGLLT--VGRGQRLGLFAGTGVGKSVLLGMMTR 190 (451)
T ss_pred cCCcccceeeecceEE--ecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999976 99999999999999999999987764
No 474
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.22 E-value=0.0033 Score=62.05 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLl~~i~G 311 (510)
T PRK15439 286 VRAGEILGLAGVVGAGRTELAETLYG 311 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 78999999999999999999987764
No 475
>PRK09183 transposase/IS protein; Provisional
Probab=97.21 E-value=0.00042 Score=61.93 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=33.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+..|+.+.|.||||+|||+|+..++..++.. +..|.|++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~------G~~v~~~~~~ 139 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA------GIKVRFTTAA 139 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc------CCeEEEEeHH
Confidence 6789999999999999999999997765531 4789998753
No 476
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.21 E-value=0.0015 Score=60.02 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=37.3
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
...+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++..
T Consensus 50 ~~~l~tGi~aiD~l~~--i~~Gqri~I~G~sG~GKTtLl~~Ia~~ 92 (326)
T cd01136 50 DEVLPTGVRAIDGLLT--VGKGQRLGIFAGSGVGKSTLLGMIARG 92 (326)
T ss_pred eeEcCCCcEEEeeeeE--EcCCcEEEEECCCCCChHHHHHHHhCC
Confidence 3478899999999965 899999999999999999997766643
No 477
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0025 Score=55.33 Aligned_cols=113 Identities=14% Similarity=0.224 Sum_probs=63.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
|+.|-.-++++||||+|||.|+...|.+.. .-||-.-+ .+-+.+.+..
T Consensus 185 gidpprgvllygppg~gktml~kava~~t~-----------a~firvvg---sefvqkylge------------------ 232 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTT-----------AAFIRVVG---SEFVQKYLGE------------------ 232 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhccc-----------hheeeecc---HHHHHHHhcc------------------
Confidence 577877899999999999999997775543 33443322 1111111110
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHH----HHHHHHHHHHHHcCCeEEEec
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLS----WHISLITSLAEFSRIPIVVTN 253 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~----~i~~~Lk~la~~~~~~vv~~~ 253 (357)
.+.. +..+-++.++..+.+|+||.+.++....++....-..++. +++..+..+-...|+-||+..
T Consensus 233 -------gprm----vrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimat 301 (408)
T KOG0727|consen 233 -------GPRM----VRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMAT 301 (408)
T ss_pred -------CcHH----HHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEec
Confidence 0111 1222233445678999999999887665443322223333 333333344455677776654
No 478
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.0089 Score=54.29 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=63.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEE
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (357)
+-.++++.|-+|+||||-.-.+|...... +.+|+...++ +|..-.+.|+.. |.+.. ++-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~------g~~VllaA~D-TFRAaAiEQL~~-----------w~er~--gv~v 197 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQ------GKSVLLAAGD-TFRAAAIEQLEV-----------WGERL--GVPV 197 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHC------CCeEEEEecc-hHHHHHHHHHHH-----------HHHHh--CCeE
Confidence 46799999999999999999999888642 4777766664 666655555432 11222 2333
Q ss_pred eCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccC
Q 035774 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP 218 (357)
Q Consensus 181 ~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~ 218 (357)
+......+...+.....+.....++++|+||....+..
T Consensus 198 I~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhn 235 (340)
T COG0552 198 ISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHN 235 (340)
T ss_pred EccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccC
Confidence 33223334444555544555567999999998887643
No 479
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.20 E-value=0.0017 Score=63.88 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 24 i~~Ge~~~liG~nGsGKSTLl~~i~G 49 (500)
T TIGR02633 24 VRPGECVGLCGENGAGKSTLMKILSG 49 (500)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999997774
No 480
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.0044 Score=61.52 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=27.4
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-|+.+-- -++||+++.+.||+|+||||++.-+..-.
T Consensus 483 Vlk~lsf-ti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 483 VLKNLSF-TIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred hhcCcee-eeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3444433 39999999999999999999987555443
No 481
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=97.19 E-value=0.0014 Score=62.46 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=39.7
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.+.||+..+|-++. +.+|+.+.|.|++|+|||+|+.+++...
T Consensus 139 ~~~l~TGir~ID~l~~--i~~Gqri~I~G~sG~GKTtLL~~I~~~~ 182 (442)
T PRK08927 139 GEPLDLGVRALNTFLT--CCRGQRMGIFAGSGVGKSVLLSMLARNA 182 (442)
T ss_pred ccccccceEEEeeeeE--EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 5689999999999997 8999999999999999999998777554
No 482
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=97.19 E-value=0.0019 Score=62.80 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=47.4
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||+..+|.++. +-+|+=..|.|++|+|||+||++++.+... .+..|+|...-+
T Consensus 143 ~~~l~TGi~~ID~l~p--igrGQr~~Ifg~~g~GKt~lal~~i~~~~~------~dv~~V~~~IGe 200 (502)
T PRK09281 143 HEPLQTGIKAIDAMIP--IGRGQRELIIGDRQTGKTAIAIDTIINQKG------KDVICIYVAIGQ 200 (502)
T ss_pred cceeecCCeeeecccc--cccCcEEEeecCCCCCchHHHHHHHHHhcC------CCeEEEEEEecC
Confidence 5689999999999987 889999999999999999998887766542 245568877543
No 483
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.01 Score=50.53 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=26.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
+++|++..|.||+|+|||||...+.-...
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccC
Confidence 89999999999999999999998886553
No 484
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0046 Score=55.04 Aligned_cols=104 Identities=19% Similarity=0.277 Sum_probs=65.2
Q ss_pred CcccHHHHHHHHHhcccCCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEE
Q 035774 63 PFQTALLLMEQRAATEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYI 142 (357)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i 142 (357)
+...|.+.+.+. --+|--++.| +.|+-.|=.-++++||||+|||-||...|-.+ ..-||
T Consensus 137 GLE~AKeALKEA-------VILPIKFPql---FtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-----------nSTFF 195 (439)
T KOG0739|consen 137 GLEGAKEALKEA-------VILPIKFPQL---FTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-----------NSTFF 195 (439)
T ss_pred cchhHHHHHHhh-------eeecccchhh---hcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-----------CCceE
Confidence 345555555542 2345555544 66777788889999999999999999777544 14455
Q ss_pred eCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCC
Q 035774 143 DVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPG 219 (357)
Q Consensus 143 ~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~ 219 (357)
+... ..+.. . | + .+-..++..+-.+.+++.+.+|+||.+.++...
T Consensus 196 SvSS----SDLvS---K-W-------------m-----------GESEkLVknLFemARe~kPSIIFiDEiDslcg~ 240 (439)
T KOG0739|consen 196 SVSS----SDLVS---K-W-------------M-----------GESEKLVKNLFEMARENKPSIIFIDEIDSLCGS 240 (439)
T ss_pred Eeeh----HHHHH---H-H-------------h-----------ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccC
Confidence 5432 11110 0 0 0 011234445556667789999999999988765
No 485
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.18 E-value=0.0013 Score=66.82 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+|+++.|.|++|+|||||+.-++..
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 57 (648)
T PRK10535 31 IYAGEMVAIVGASGSGKSTLMNILGCL 57 (648)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999999977754
No 486
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.17 E-value=0.00062 Score=57.11 Aligned_cols=40 Identities=38% Similarity=0.434 Sum_probs=32.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.++|.++.|.|+|||||||++..++.....+ +..++|++.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~------~~~~~~~~~ 43 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLK------YSNVIYLDG 43 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHc------CCcEEEEec
Confidence 5678999999999999999999988776421 355777764
No 487
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.17 E-value=0.0041 Score=62.73 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAAL 128 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~ 128 (357)
.....++|+|++|+|||+++..|+.....
T Consensus 36 RL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 36 RLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34557899999999999999999987753
No 488
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.17 E-value=0.0038 Score=58.52 Aligned_cols=42 Identities=29% Similarity=0.315 Sum_probs=32.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~ 148 (357)
.+++|.|.||||||.++++++...... ..+..++|+.....+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~----~~~~~~~~l~~n~~l 43 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNS----EEGKKVLYLCGNHPL 43 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhcc----ccCCceEEEEecchH
Confidence 578999999999999999999988211 125778888876643
No 489
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.17 E-value=0.0044 Score=62.88 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+..++.
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLlk~l~G 367 (635)
T PRK11147 342 VQRGDKIALIGPNGCGKTTLLKLMLG 367 (635)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 78999999999999999999987774
No 490
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.17 E-value=0.0012 Score=62.84 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=37.3
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
.+.+.||+..+|..+. +.+|+.+.|.|++|+|||+|+..++..
T Consensus 121 ~~~l~tGi~aiD~~~~--i~~Gq~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 121 GEPLDTGVRVIDTFLP--LCRGQRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred ccccCCccEEEeeecc--ccCCcEEEEECCCCCChHHHHHHHhCC
Confidence 4689999999998765 899999999999999999998666543
No 491
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.0075 Score=55.71 Aligned_cols=29 Identities=21% Similarity=0.082 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAAL 128 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~ 128 (357)
....-+++.||+|+|||+++..++.....
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC 47 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLC 47 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcC
Confidence 44557999999999999999999988765
No 492
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.16 E-value=0.0059 Score=62.15 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+.+.|.|++|+|||||+.-++..
T Consensus 475 i~~Ge~~~IvG~nGsGKSTLl~lL~Gl 501 (659)
T TIGR00954 475 VPSGNHLLICGPNGCGKSSLFRILGEL 501 (659)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999999877653
No 493
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.15 E-value=0.0041 Score=52.90 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=33.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
-++.|+++.|.|.+|+|||||+..++-.... ...-++|+...
T Consensus 28 ~I~~g~FvtViGsNGAGKSTlln~iaG~l~~-------t~G~I~Idg~d 69 (263)
T COG1101 28 EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-------TSGQILIDGVD 69 (263)
T ss_pred eecCCceEEEEcCCCccHHHHHHHhhCcccc-------CCceEEECcee
Confidence 3899999999999999999999988866543 24466777653
No 494
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=97.15 E-value=0.0028 Score=56.51 Aligned_cols=62 Identities=10% Similarity=0.147 Sum_probs=48.2
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||++.+|-++. +-+|+=+.|.|.+|+|||+|+.+++.+....++ +....|+|.-.-+
T Consensus 50 ~e~l~TGIkaID~l~p--ig~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~--~~~~v~V~~~IGe 111 (276)
T cd01135 50 EEMIQTGISAIDGMNT--LVRGQKIPIFSGSGLPHNELAAQIARQAGVVGE--EENFAVVFAAMGI 111 (276)
T ss_pred ccccccCcEeeecccc--cccCCEEEeecCCCCChhHHHHHHHHhhhcccc--CCCCEEEEEEecc
Confidence 5689999999999987 789999999999999999999998876532110 1135677776533
No 495
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=97.15 E-value=0.0026 Score=60.79 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=47.7
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.+.+.||+..+|-++. +.+|+=..|.|++|+|||+|+.+++.+.... ...-++|.-.
T Consensus 119 ~e~L~TGIr~ID~l~p--igkGQr~~Ifg~~G~GKt~l~~~~~~~~~~~-----~~~v~V~~~i 175 (449)
T TIGR03305 119 SEVFETGIKAIDVLVP--LERGGKAGLFGGAGVGKTVLLTEMIHNMVGQ-----HQGVSIFCGI 175 (449)
T ss_pred CcccccCceeeccccc--cccCCEEEeecCCCCChhHHHHHHHHHHHhc-----CCCEEEEEEe
Confidence 5689999999999987 8899999999999999999999999987521 1245667654
No 496
>PRK13695 putative NTPase; Provisional
Probab=97.14 E-value=0.0011 Score=55.60 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-+.|.|+||+|||||+..++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999887654
No 497
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.14 E-value=0.0012 Score=62.77 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=37.3
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
...+.||+..+|.++. +.+|+.+.|.|++|+|||+|+..++.
T Consensus 118 ~~~~~tGi~~id~l~~--i~~Gq~~~I~G~sG~GKTtLl~~I~~ 159 (411)
T TIGR03496 118 DEPLDVGVRAINGLLT--VGRGQRMGIFAGSGVGKSTLLGMMAR 159 (411)
T ss_pred ceEeeeeEEeecceEE--EecCcEEEEECCCCCCHHHHHHHHhc
Confidence 4578899999999976 99999999999999999999876664
No 498
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.14 E-value=0.0035 Score=53.72 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
+++|+||+||||||++..++....
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 799999999999999988877654
No 499
>PRK13409 putative ATPase RIL; Provisional
Probab=97.14 E-value=0.0042 Score=62.24 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=32.7
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|..++.... .....+.+.|+++++ +.+||+++|-..
T Consensus 229 ~~p~lllLDEPts~LD~---------~~~~~l~~~i~~l~~--g~tvIivsHd~~ 272 (590)
T PRK13409 229 RDADFYFFDEPTSYLDI---------RQRLNVARLIRELAE--GKYVLVVEHDLA 272 (590)
T ss_pred cCCCEEEEECCCCCCCH---------HHHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 47999999988766543 445556777777765 899999998644
No 500
>PTZ00185 ATPase alpha subunit; Provisional
Probab=97.14 E-value=0.0027 Score=61.10 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=47.5
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcc-ccC-CCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL-PAH-YGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~-~~~-~gg~~~~vl~i~~e~ 146 (357)
.+.+.||++.+|.++. +-+|+=..|.|++|+|||++++..+.+... ... ..+....|+|+..-+
T Consensus 170 ~epL~TGIkaID~LiP--IGRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGe 235 (574)
T PTZ00185 170 NYNLLTGFKAVDTMIP--IGRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQ 235 (574)
T ss_pred CCcCcCCceeeecccc--ccCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEecc
Confidence 5689999999999987 889999999999999999998766655431 000 001135688887644
Done!