Query 035774
Match_columns 357
No_of_seqs 340 out of 2694
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 10:17:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v5w_A DMC1, meiotic recombina 100.0 3.5E-45 1.2E-49 339.2 24.3 308 5-340 26-342 (343)
2 2i1q_A DNA repair and recombin 100.0 1.8E-44 6.1E-49 332.6 28.1 303 4-337 3-321 (322)
3 2z43_A DNA repair and recombin 100.0 3.2E-45 1.1E-49 337.4 22.0 306 4-340 12-323 (324)
4 3lda_A DNA repair protein RAD5 100.0 3E-43 1E-47 330.2 33.6 309 6-342 86-398 (400)
5 1pzn_A RAD51, DNA repair and r 100.0 1.2E-40 4.1E-45 309.1 32.0 303 4-337 35-348 (349)
6 1n0w_A DNA repair protein RAD5 100.0 1.3E-32 4.3E-37 243.0 22.3 236 81-340 3-242 (243)
7 2zts_A Putative uncharacterize 100.0 1.4E-32 4.7E-37 243.8 19.6 222 80-345 8-251 (251)
8 2cvh_A DNA repair and recombin 100.0 1.9E-30 6.5E-35 225.5 25.5 216 83-339 1-219 (220)
9 3bh0_A DNAB-like replicative h 100.0 1.3E-29 4.4E-34 232.2 26.2 231 80-338 47-305 (315)
10 3hr8_A Protein RECA; alpha and 100.0 5.6E-30 1.9E-34 235.9 22.4 216 81-340 39-274 (356)
11 3io5_A Recombination and repai 100.0 5.5E-30 1.9E-34 228.8 21.2 216 81-340 4-245 (333)
12 3bgw_A DNAB-like replicative h 100.0 5.6E-30 1.9E-34 244.3 20.8 234 80-340 176-436 (444)
13 1u94_A RECA protein, recombina 100.0 2.7E-29 9.4E-34 232.4 21.1 215 81-339 41-275 (356)
14 1xp8_A RECA protein, recombina 100.0 2.2E-29 7.4E-34 233.7 20.4 215 81-339 52-287 (366)
15 2q6t_A DNAB replication FORK h 100.0 5.5E-30 1.9E-34 245.5 16.7 233 81-338 180-437 (444)
16 4a1f_A DNAB helicase, replicat 100.0 1.5E-29 5.3E-34 231.4 17.4 238 69-334 13-310 (338)
17 2dr3_A UPF0273 protein PH0284; 100.0 5.3E-28 1.8E-32 213.7 22.5 218 81-346 2-241 (247)
18 2zr9_A Protein RECA, recombina 100.0 3E-28 1E-32 225.4 20.7 215 81-339 39-273 (349)
19 4a74_A DNA repair and recombin 100.0 5.2E-28 1.8E-32 211.6 20.5 218 81-337 4-230 (231)
20 2r6a_A DNAB helicase, replicat 100.0 4.7E-28 1.6E-32 232.7 18.3 236 79-340 181-440 (454)
21 3cmu_A Protein RECA, recombina 100.0 3.8E-28 1.3E-32 260.7 17.4 215 81-339 710-944 (2050)
22 1q57_A DNA primase/helicase; d 99.9 2.4E-26 8.1E-31 223.9 25.3 231 79-333 219-474 (503)
23 3cmw_A Protein RECA, recombina 99.9 5.6E-26 1.9E-30 241.9 23.6 215 81-339 361-595 (1706)
24 3cmu_A Protein RECA, recombina 99.9 7.3E-26 2.5E-30 243.2 21.6 215 81-339 12-246 (2050)
25 3cmw_A Protein RECA, recombina 99.9 2.6E-25 8.9E-30 236.9 21.5 217 80-340 709-945 (1706)
26 2w0m_A SSO2452; RECA, SSPF, un 99.9 4.8E-24 1.6E-28 186.5 20.5 209 82-342 3-233 (235)
27 2ehv_A Hypothetical protein PH 99.9 3.4E-22 1.2E-26 176.8 20.4 220 81-344 9-250 (251)
28 1cr0_A DNA primase/helicase; R 99.9 1.9E-21 6.6E-26 176.5 23.4 248 69-342 3-278 (296)
29 1nlf_A Regulatory protein REPA 99.8 5.1E-19 1.7E-23 159.2 20.2 223 83-340 12-263 (279)
30 1tf7_A KAIC; homohexamer, hexa 99.8 6.3E-19 2.2E-23 172.2 22.2 215 81-343 260-484 (525)
31 3bs4_A Uncharacterized protein 99.8 1.8E-18 6.2E-23 152.1 19.3 202 83-334 2-246 (260)
32 1tf7_A KAIC; homohexamer, hexa 99.7 2.2E-15 7.7E-20 147.0 22.7 217 81-341 18-249 (525)
33 2vhj_A Ntpase P4, P4; non- hyd 99.6 8.5E-16 2.9E-20 138.1 9.0 128 82-255 104-235 (331)
34 1b22_A DNA repair protein RAD5 99.1 6.5E-11 2.2E-15 89.7 4.0 84 9-96 31-114 (114)
35 2b8t_A Thymidine kinase; deoxy 98.8 3.4E-08 1.2E-12 84.8 11.3 118 100-257 10-127 (223)
36 2kz3_A Putative uncharacterize 98.5 1.4E-07 4.7E-12 67.0 4.3 73 1-73 1-74 (83)
37 4a8j_A Elongator complex prote 98.5 1.2E-06 4E-11 79.6 11.5 119 189-338 200-348 (361)
38 1c9k_A COBU, adenosylcobinamid 98.4 9.5E-08 3.2E-12 78.9 3.1 125 104-257 1-138 (180)
39 3tif_A Uncharacterized ABC tra 98.4 9.7E-07 3.3E-11 76.6 8.9 44 203-255 162-205 (235)
40 3ec2_A DNA replication protein 98.4 1.9E-06 6.6E-11 71.3 10.0 42 99-145 35-76 (180)
41 3tui_C Methionine import ATP-b 98.3 2E-06 6.8E-11 79.1 10.1 45 203-256 180-224 (366)
42 2orw_A Thymidine kinase; TMTK, 98.3 1.3E-06 4.6E-11 72.8 7.8 111 101-255 2-112 (184)
43 3dm5_A SRP54, signal recogniti 98.3 5.1E-05 1.8E-09 71.4 19.0 95 101-215 99-193 (443)
44 3gfo_A Cobalt import ATP-bindi 98.3 2.9E-06 1E-10 75.2 10.0 46 203-257 160-205 (275)
45 1j8m_F SRP54, signal recogniti 98.3 3.9E-05 1.3E-09 68.8 17.0 54 87-146 76-136 (297)
46 3kl4_A SRP54, signal recogniti 98.2 3.4E-05 1.2E-09 72.6 16.2 40 101-146 96-135 (433)
47 2kjq_A DNAA-related protein; s 98.2 1E-05 3.5E-10 64.9 10.6 40 101-146 35-74 (149)
48 4g1u_C Hemin import ATP-bindin 98.2 1E-05 3.4E-10 71.5 11.4 43 204-255 165-207 (266)
49 4b4t_J 26S protease regulatory 98.2 7.3E-06 2.5E-10 76.1 10.9 113 98-253 178-294 (405)
50 2pcj_A ABC transporter, lipopr 98.2 3.7E-06 1.3E-10 72.4 8.2 43 203-255 157-199 (224)
51 4b4t_K 26S protease regulatory 98.1 1.4E-05 4.9E-10 75.0 11.1 113 98-253 202-318 (428)
52 4b4t_I 26S protease regulatory 98.1 2.3E-05 7.9E-10 73.1 11.9 114 97-253 211-328 (437)
53 4b4t_L 26S protease subunit RP 98.1 1.7E-05 5.8E-10 74.7 11.2 79 98-219 211-289 (437)
54 2olj_A Amino acid ABC transpor 98.1 9.8E-06 3.4E-10 71.4 8.9 43 203-255 176-218 (263)
55 1g6h_A High-affinity branched- 98.1 9.2E-06 3.2E-10 71.4 8.7 44 203-256 170-213 (257)
56 4gp7_A Metallophosphoesterase; 98.1 1.3E-05 4.3E-10 65.9 8.9 23 99-121 6-28 (171)
57 3rlf_A Maltose/maltodextrin im 98.1 6.7E-06 2.3E-10 76.0 7.7 45 203-256 150-194 (381)
58 2nq2_C Hypothetical ABC transp 98.1 1.7E-05 5.8E-10 69.5 9.7 144 99-256 28-189 (253)
59 3fvq_A Fe(3+) IONS import ATP- 98.1 8.2E-06 2.8E-10 74.9 7.8 45 203-256 155-199 (359)
60 3h4m_A Proteasome-activating n 98.0 6.7E-05 2.3E-09 66.7 13.5 38 98-144 47-84 (285)
61 4b4t_M 26S protease regulatory 98.0 1.1E-05 3.6E-10 76.0 8.4 38 98-144 211-248 (434)
62 3e70_C DPA, signal recognition 98.0 0.00037 1.3E-08 63.3 18.3 41 100-146 127-167 (328)
63 1vpl_A ABC transporter, ATP-bi 98.0 2E-05 6.8E-10 69.1 8.8 25 99-123 38-62 (256)
64 1ji0_A ABC transporter; ATP bi 98.0 1.1E-05 3.7E-10 70.2 7.0 43 203-255 156-198 (240)
65 4b4t_H 26S protease regulatory 98.0 2.9E-05 1E-09 73.1 10.2 79 98-219 239-317 (467)
66 2ihy_A ABC transporter, ATP-bi 98.0 1.3E-05 4.5E-10 71.3 7.3 45 203-257 178-224 (279)
67 1v43_A Sugar-binding transport 98.0 2.4E-05 8.3E-10 72.2 9.3 45 203-256 158-202 (372)
68 3d31_A Sulfate/molybdate ABC t 98.0 3.7E-05 1.3E-09 70.4 10.4 45 203-256 144-188 (348)
69 1g29_1 MALK, maltose transport 97.9 1.8E-05 6.1E-10 73.2 8.1 45 203-256 156-200 (372)
70 1z47_A CYSA, putative ABC-tran 97.9 1.7E-05 5.8E-10 72.8 7.8 46 203-257 162-207 (355)
71 2it1_A 362AA long hypothetical 97.9 2.1E-05 7.2E-10 72.4 8.1 45 203-256 150-194 (362)
72 1b0u_A Histidine permease; ABC 97.9 2.2E-05 7.5E-10 69.2 7.7 43 203-255 170-212 (262)
73 1fnn_A CDC6P, cell division co 97.9 9.5E-05 3.2E-09 68.5 12.4 119 104-255 46-168 (389)
74 3t15_A Ribulose bisphosphate c 97.9 4.4E-05 1.5E-09 68.4 9.7 82 98-218 32-113 (293)
75 2yyz_A Sugar ABC transporter, 97.9 1.9E-05 6.4E-10 72.7 7.3 46 203-257 150-195 (359)
76 2qz4_A Paraplegin; AAA+, SPG7, 97.9 6.7E-05 2.3E-09 65.7 10.7 40 98-146 35-74 (262)
77 2yhs_A FTSY, cell division pro 97.9 9.8E-05 3.4E-09 70.3 12.4 41 99-145 290-330 (503)
78 1xwi_A SKD1 protein; VPS4B, AA 97.9 7.8E-05 2.7E-09 67.7 10.8 41 97-145 40-80 (322)
79 1vma_A Cell division protein F 97.9 0.00024 8.3E-09 63.8 13.8 42 99-146 101-142 (306)
80 3ozx_A RNAse L inhibitor; ATP 97.9 0.00014 4.9E-09 70.6 13.1 144 99-256 291-446 (538)
81 2yz2_A Putative ABC transporte 97.9 4.2E-05 1.4E-09 67.5 8.6 44 203-256 155-198 (266)
82 2ff7_A Alpha-hemolysin translo 97.9 8.7E-05 3E-09 64.7 10.5 26 99-124 32-57 (247)
83 2qi9_C Vitamin B12 import ATP- 97.9 5.4E-05 1.8E-09 66.1 9.0 25 99-123 23-47 (249)
84 3eie_A Vacuolar protein sortin 97.8 9.5E-05 3.2E-09 67.1 11.0 39 97-144 46-84 (322)
85 2j37_W Signal recognition part 97.8 0.0009 3.1E-08 64.2 18.1 39 102-146 101-139 (504)
86 2onk_A Molybdate/tungstate ABC 97.8 7.9E-05 2.7E-09 64.6 9.9 44 203-255 143-186 (240)
87 3bos_A Putative DNA replicatio 97.8 9E-05 3.1E-09 63.7 10.2 49 90-146 42-90 (242)
88 2ixe_A Antigen peptide transpo 97.8 4.4E-05 1.5E-09 67.6 8.3 45 203-256 173-217 (271)
89 1oxx_K GLCV, glucose, ABC tran 97.8 1.8E-05 6.2E-10 72.7 5.9 45 203-256 157-201 (353)
90 2j9r_A Thymidine kinase; TK1, 97.8 6E-05 2E-09 63.7 8.6 39 100-144 26-64 (214)
91 1yqt_A RNAse L inhibitor; ATP- 97.8 0.00012 4.2E-09 71.1 12.1 143 99-255 309-461 (538)
92 2qby_A CDC6 homolog 1, cell di 97.8 2.5E-05 8.5E-10 72.3 6.7 43 100-145 43-85 (386)
93 1w4r_A Thymidine kinase; type 97.8 0.00013 4.3E-09 60.7 10.2 40 100-145 18-57 (195)
94 3bk7_A ABC transporter ATP-bin 97.8 0.00012 4E-09 72.2 11.4 143 99-255 379-531 (607)
95 3cf2_A TER ATPase, transitiona 97.8 5.6E-05 1.9E-09 76.4 9.2 114 98-254 234-348 (806)
96 3cf0_A Transitional endoplasmi 97.8 5.3E-05 1.8E-09 68.1 7.8 116 98-256 45-164 (301)
97 2r8r_A Sensor protein; KDPD, P 97.8 0.00026 9E-09 60.3 11.6 41 101-147 4-45 (228)
98 2p65_A Hypothetical protein PF 97.8 0.00013 4.3E-09 60.0 9.5 26 102-127 43-68 (187)
99 3ice_A Transcription terminati 97.8 0.00018 6.2E-09 66.1 11.1 59 82-146 156-214 (422)
100 1xx6_A Thymidine kinase; NESG, 97.8 6.6E-05 2.2E-09 62.7 7.6 39 100-144 6-44 (191)
101 1zu4_A FTSY; GTPase, signal re 97.8 0.00022 7.5E-09 64.6 11.6 42 99-146 102-143 (320)
102 2ce7_A Cell division protein F 97.7 0.00015 5E-09 69.3 10.8 113 99-256 48-164 (476)
103 1sgw_A Putative ABC transporte 97.7 9E-05 3.1E-09 63.1 8.3 25 99-123 32-56 (214)
104 2v1u_A Cell division control p 97.7 5.7E-05 2E-09 69.9 7.7 50 101-150 43-92 (387)
105 3j16_B RLI1P; ribosome recycli 97.7 0.00021 7.3E-09 70.3 11.9 144 97-255 373-527 (608)
106 2qp9_X Vacuolar protein sortin 97.7 0.0004 1.4E-08 63.9 13.2 39 97-144 79-117 (355)
107 3nh6_A ATP-binding cassette SU 97.7 0.00014 4.6E-09 65.4 9.7 26 99-124 77-102 (306)
108 3b9p_A CG5977-PA, isoform A; A 97.7 0.00036 1.2E-08 62.3 11.8 36 101-145 53-88 (297)
109 1rj9_A FTSY, signal recognitio 97.7 0.00018 6.1E-09 64.7 9.7 39 101-145 101-139 (304)
110 2xxa_A Signal recognition part 97.7 0.0019 6.7E-08 60.8 17.2 41 101-146 99-139 (433)
111 1jbk_A CLPB protein; beta barr 97.6 0.00038 1.3E-08 57.2 10.7 27 101-127 42-68 (195)
112 3b5x_A Lipid A export ATP-bind 97.6 0.00016 5.3E-09 71.2 9.5 27 99-125 366-392 (582)
113 1lv7_A FTSH; alpha/beta domain 97.6 0.00016 5.4E-09 63.3 7.9 32 105-145 48-79 (257)
114 2ffh_A Protein (FFH); SRP54, s 97.6 0.00075 2.6E-08 63.3 12.7 40 101-146 97-136 (425)
115 2x8a_A Nuclear valosin-contain 97.5 0.00058 2E-08 60.4 11.0 36 99-145 43-78 (274)
116 1ls1_A Signal recognition part 97.5 0.00033 1.1E-08 62.7 9.5 40 101-146 97-136 (295)
117 3b60_A Lipid A export ATP-bind 97.5 0.00016 5.4E-09 71.2 7.1 26 99-124 366-391 (582)
118 3hu3_A Transitional endoplasmi 97.5 0.00051 1.7E-08 65.9 10.4 37 99-144 235-271 (489)
119 1yqt_A RNAse L inhibitor; ATP- 97.5 0.00096 3.3E-08 64.8 12.5 44 203-256 175-218 (538)
120 1sxj_A Activator 1 95 kDa subu 97.5 0.00093 3.2E-08 64.7 12.1 114 100-255 75-188 (516)
121 3vfd_A Spastin; ATPase, microt 97.5 0.00097 3.3E-08 62.0 11.9 37 101-146 147-183 (389)
122 3e2i_A Thymidine kinase; Zn-bi 97.4 0.00028 9.5E-09 59.6 7.2 126 84-253 10-135 (219)
123 3d8b_A Fidgetin-like protein 1 97.4 0.00065 2.2E-08 62.5 10.5 37 100-145 115-151 (357)
124 1sky_E F1-ATPase, F1-ATP synth 97.4 0.00084 2.9E-08 63.5 11.1 57 81-144 132-188 (473)
125 3uk6_A RUVB-like 2; hexameric 97.4 0.00066 2.3E-08 62.5 10.3 33 95-127 63-95 (368)
126 2yl4_A ATP-binding cassette SU 97.4 0.00048 1.6E-08 67.9 9.8 26 99-124 367-392 (595)
127 3gd7_A Fusion complex of cysti 97.4 0.00025 8.4E-09 65.9 7.0 39 99-145 44-82 (390)
128 1g5t_A COB(I)alamin adenosyltr 97.4 0.00035 1.2E-08 58.1 7.1 127 103-255 29-162 (196)
129 1l8q_A Chromosomal replication 97.4 0.00094 3.2E-08 60.4 10.6 39 101-145 36-74 (324)
130 2chg_A Replication factor C sm 97.4 0.0016 5.5E-08 54.7 11.4 23 105-127 41-63 (226)
131 2fna_A Conserved hypothetical 97.3 0.0011 3.8E-08 60.3 10.7 35 103-146 31-65 (357)
132 2px0_A Flagellar biosynthesis 97.3 0.00071 2.4E-08 60.5 9.1 42 100-146 103-144 (296)
133 1d2n_A N-ethylmaleimide-sensit 97.3 0.00071 2.4E-08 59.6 9.0 37 99-144 61-97 (272)
134 2qby_B CDC6 homolog 3, cell di 97.3 0.00064 2.2E-08 62.8 8.9 44 102-145 45-90 (384)
135 1ypw_A Transitional endoplasmi 97.3 0.00052 1.8E-08 70.0 8.7 38 98-144 234-271 (806)
136 2orv_A Thymidine kinase; TP4A 97.3 0.0026 9E-08 54.2 11.6 39 101-145 18-56 (234)
137 3qf4_A ABC transporter, ATP-bi 97.3 0.00072 2.5E-08 66.5 9.3 40 99-145 366-405 (587)
138 2v3c_C SRP54, signal recogniti 97.3 0.00022 7.6E-09 67.2 5.4 38 103-146 100-137 (432)
139 2qen_A Walker-type ATPase; unk 97.3 0.0012 4E-08 60.0 10.2 34 102-146 31-64 (350)
140 2zan_A Vacuolar protein sortin 97.3 0.00045 1.5E-08 65.5 7.5 41 97-145 162-202 (444)
141 1zp6_A Hypothetical protein AT 97.3 0.00014 4.7E-09 60.4 3.5 38 99-145 6-43 (191)
142 3qf4_B Uncharacterized ABC tra 97.2 0.0011 3.6E-08 65.5 9.9 26 99-124 378-403 (598)
143 2qe7_A ATP synthase subunit al 97.2 0.0013 4.4E-08 62.4 10.0 58 81-146 143-200 (502)
144 1z3e_B DNA-directed RNA polyme 97.2 0.00088 3E-08 46.0 6.5 56 3-58 8-63 (73)
145 3te6_A Regulatory protein SIR3 97.2 0.0015 5.3E-08 58.8 10.0 62 90-153 35-97 (318)
146 3syl_A Protein CBBX; photosynt 97.2 0.0028 9.5E-08 56.7 11.8 42 101-144 66-107 (309)
147 1lw7_A Transcriptional regulat 97.2 0.00073 2.5E-08 62.4 8.0 32 95-126 161-194 (365)
148 3jvv_A Twitching mobility prot 97.2 0.00043 1.5E-08 63.6 6.2 28 99-126 120-147 (356)
149 2obl_A ESCN; ATPase, hydrolase 97.2 0.00039 1.3E-08 63.6 6.0 44 81-126 52-95 (347)
150 2z4s_A Chromosomal replication 97.2 0.00098 3.4E-08 63.1 8.9 41 102-146 130-170 (440)
151 2r9v_A ATP synthase subunit al 97.2 0.0013 4.6E-08 62.4 9.7 58 81-146 156-213 (515)
152 2dpy_A FLII, flagellum-specifi 97.2 0.00054 1.8E-08 64.8 7.0 56 81-145 138-193 (438)
153 2ck3_A ATP synthase subunit al 97.2 0.002 6.7E-08 61.3 10.6 64 81-146 143-208 (510)
154 2ck3_D ATP synthase subunit be 97.2 0.0032 1.1E-07 59.4 12.0 59 81-146 134-192 (482)
155 3j16_B RLI1P; ribosome recycli 97.2 0.0029 1E-07 62.2 12.2 44 203-256 238-281 (608)
156 1fx0_A ATP synthase alpha chai 97.2 0.0017 5.8E-08 61.7 10.0 58 81-146 144-201 (507)
157 1tue_A Replication protein E1; 97.2 0.00024 8.3E-09 59.5 3.7 42 83-126 41-82 (212)
158 3thx_B DNA mismatch repair pro 97.2 0.0013 4.4E-08 67.6 9.8 29 99-127 670-698 (918)
159 3bk7_A ABC transporter ATP-bin 97.2 0.0019 6.6E-08 63.5 10.7 44 203-256 245-288 (607)
160 2dhr_A FTSH; AAA+ protein, hex 97.2 0.0006 2.1E-08 65.4 6.9 36 99-145 63-98 (499)
161 3oaa_A ATP synthase subunit al 97.2 0.0026 8.9E-08 60.2 11.0 58 81-146 143-200 (513)
162 3k4g_A DNA-directed RNA polyme 97.1 0.0011 3.7E-08 47.0 6.3 56 3-58 11-66 (86)
163 1kgd_A CASK, peripheral plasma 97.1 0.0003 1E-08 58.0 4.0 29 98-126 1-29 (180)
164 2og2_A Putative signal recogni 97.1 0.008 2.7E-07 55.1 13.9 41 99-145 154-194 (359)
165 3b9q_A Chloroplast SRP recepto 97.1 0.0072 2.5E-07 54.1 13.3 41 99-145 97-137 (302)
166 2yvu_A Probable adenylyl-sulfa 97.1 0.00056 1.9E-08 56.5 5.3 47 90-144 3-49 (186)
167 2ius_A DNA translocase FTSK; n 97.1 0.0009 3.1E-08 64.2 7.4 46 99-146 164-209 (512)
168 3gfk_B DNA-directed RNA polyme 97.1 0.00084 2.9E-08 46.8 5.2 56 3-58 15-70 (79)
169 1sxj_E Activator 1 40 kDa subu 97.1 0.002 7E-08 58.8 9.6 23 105-127 39-61 (354)
170 3ozx_A RNAse L inhibitor; ATP 97.1 0.0036 1.2E-07 60.7 11.6 43 203-256 155-197 (538)
171 1wcn_A Transcription elongatio 97.1 0.0014 4.8E-08 44.8 6.0 49 10-58 14-62 (70)
172 4a82_A Cystic fibrosis transme 97.0 0.0012 4.1E-08 64.8 8.0 25 99-123 364-388 (578)
173 2rhm_A Putative kinase; P-loop 97.0 0.00044 1.5E-08 57.3 4.0 29 98-126 1-29 (193)
174 3iqw_A Tail-anchored protein t 97.0 0.0022 7.6E-08 58.3 8.9 50 90-147 6-55 (334)
175 3tr0_A Guanylate kinase, GMP k 97.0 0.0004 1.4E-08 58.2 3.7 27 99-125 4-30 (205)
176 4f4c_A Multidrug resistance pr 97.0 0.00078 2.7E-08 72.4 6.6 40 99-145 1102-1141(1321)
177 3uie_A Adenylyl-sulfate kinase 97.0 0.00077 2.6E-08 56.5 5.2 41 99-145 22-62 (200)
178 4f4c_A Multidrug resistance pr 97.0 0.0012 4E-08 71.0 7.7 27 99-125 441-467 (1321)
179 1htw_A HI0065; nucleotide-bind 97.0 0.00051 1.7E-08 55.4 3.8 28 99-126 30-57 (158)
180 1gvn_B Zeta; postsegregational 96.9 0.00095 3.3E-08 59.4 5.7 37 100-145 31-67 (287)
181 1znw_A Guanylate kinase, GMP k 96.9 0.00048 1.6E-08 58.1 3.6 28 99-126 17-44 (207)
182 3zq6_A Putative arsenical pump 96.9 0.0023 7.9E-08 58.0 8.3 39 103-147 15-53 (324)
183 1w5s_A Origin recognition comp 96.9 0.00087 3E-08 62.5 5.7 46 101-146 49-96 (412)
184 2pez_A Bifunctional 3'-phospho 96.9 0.00089 3E-08 54.9 5.1 39 100-144 3-41 (179)
185 2j41_A Guanylate kinase; GMP, 96.9 0.00052 1.8E-08 57.6 3.7 28 99-126 3-30 (207)
186 1s96_A Guanylate kinase, GMP k 96.9 0.00054 1.8E-08 58.5 3.5 29 98-126 12-40 (219)
187 3mfy_A V-type ATP synthase alp 96.9 0.0058 2E-07 58.5 10.8 56 81-146 208-263 (588)
188 2w58_A DNAI, primosome compone 96.8 0.0011 3.8E-08 55.4 5.0 36 103-144 55-90 (202)
189 1z6g_A Guanylate kinase; struc 96.8 0.00056 1.9E-08 58.3 3.1 28 99-126 20-47 (218)
190 3cf2_A TER ATPase, transitiona 96.8 0.00059 2E-08 69.0 3.7 112 97-251 506-621 (806)
191 3pvs_A Replication-associated 96.8 0.0068 2.3E-07 57.4 10.8 24 103-126 51-74 (447)
192 3c8u_A Fructokinase; YP_612366 96.8 0.00065 2.2E-08 57.3 3.4 28 99-126 19-46 (208)
193 3u61_B DNA polymerase accessor 96.8 0.0078 2.7E-07 54.2 10.8 36 102-146 48-83 (324)
194 3tau_A Guanylate kinase, GMP k 96.8 0.00076 2.6E-08 57.0 3.7 27 100-126 6-32 (208)
195 4dzz_A Plasmid partitioning pr 96.8 0.0033 1.1E-07 52.4 7.6 37 105-147 5-41 (206)
196 1fx0_B ATP synthase beta chain 96.8 0.0019 6.5E-08 61.2 6.6 59 81-146 146-204 (498)
197 1u9l_A Transcription elongatio 96.8 0.0026 8.8E-08 43.4 5.5 54 6-59 9-62 (70)
198 4eun_A Thermoresistant glucoki 96.8 0.0009 3.1E-08 56.0 4.0 36 100-146 27-62 (200)
199 2iut_A DNA translocase FTSK; n 96.8 0.0028 9.6E-08 61.4 7.8 45 206-257 345-389 (574)
200 3ux8_A Excinuclease ABC, A sub 96.8 0.0021 7E-08 64.3 7.1 42 205-256 223-264 (670)
201 2v9p_A Replication protein E1; 96.8 0.001 3.5E-08 59.6 4.4 36 90-126 115-150 (305)
202 3vaa_A Shikimate kinase, SK; s 96.8 0.00096 3.3E-08 55.8 4.0 28 99-126 22-49 (199)
203 3l0o_A Transcription terminati 96.8 0.0013 4.3E-08 60.5 4.9 59 82-146 157-215 (427)
204 3thx_A DNA mismatch repair pro 96.8 0.0063 2.2E-07 62.7 10.7 29 99-127 659-687 (934)
205 2woj_A ATPase GET3; tail-ancho 96.7 0.006 2.1E-07 55.9 9.6 51 89-147 7-59 (354)
206 1oft_A SULA, hypothetical prot 96.7 0.027 9.3E-07 44.9 12.1 134 82-252 23-158 (161)
207 2eyu_A Twitching motility prot 96.7 0.0013 4.5E-08 57.6 4.9 35 89-126 15-49 (261)
208 3kjh_A CO dehydrogenase/acetyl 96.7 0.0022 7.4E-08 55.4 6.3 37 105-147 3-39 (254)
209 1lvg_A Guanylate kinase, GMP k 96.7 0.00067 2.3E-08 56.8 2.9 28 99-126 1-28 (198)
210 1z6t_A APAF-1, apoptotic prote 96.7 0.0044 1.5E-07 60.8 9.2 54 90-146 135-189 (591)
211 3p32_A Probable GTPase RV1496/ 96.7 0.011 3.6E-07 54.3 11.1 40 101-146 78-117 (355)
212 1rz3_A Hypothetical protein rb 96.7 0.0021 7.2E-08 53.8 5.8 42 99-146 19-60 (201)
213 3ug7_A Arsenical pump-driving 96.7 0.0017 5.7E-08 59.6 5.4 43 99-147 23-65 (349)
214 1wb9_A DNA mismatch repair pro 96.7 0.012 4E-07 59.8 11.7 28 100-127 605-632 (800)
215 4aby_A DNA repair protein RECN 96.7 0.0079 2.7E-07 56.2 9.9 39 206-255 317-355 (415)
216 3g5u_A MCG1178, multidrug resi 96.6 0.0057 2E-07 65.5 9.9 26 99-124 413-438 (1284)
217 2cbz_A Multidrug resistance-as 96.6 0.00087 3E-08 57.9 3.0 26 99-124 28-53 (237)
218 1hyq_A MIND, cell division inh 96.6 0.0072 2.5E-07 52.6 9.0 37 104-146 5-41 (263)
219 2qor_A Guanylate kinase; phosp 96.6 0.0012 4E-08 55.5 3.7 28 99-126 9-36 (204)
220 1knq_A Gluconate kinase; ALFA/ 96.6 0.0014 4.7E-08 53.5 4.0 26 100-125 6-31 (175)
221 3g5u_A MCG1178, multidrug resi 96.6 0.0031 1.1E-07 67.6 7.6 26 99-124 1056-1081(1284)
222 2zu0_C Probable ATP-dependent 96.6 0.0012 4.2E-08 58.1 3.5 26 99-124 43-68 (267)
223 1qhx_A CPT, protein (chloramph 96.6 0.0015 5.2E-08 53.2 3.9 25 102-126 3-27 (178)
224 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0017 5.7E-08 56.9 4.3 38 101-144 3-40 (260)
225 1mv5_A LMRA, multidrug resista 96.6 0.001 3.6E-08 57.6 2.9 26 99-124 25-50 (243)
226 3lnc_A Guanylate kinase, GMP k 96.6 0.00079 2.7E-08 57.8 2.1 27 99-125 24-51 (231)
227 2d2e_A SUFC protein; ABC-ATPas 96.6 0.0012 4E-08 57.6 3.2 26 99-124 26-51 (250)
228 2pze_A Cystic fibrosis transme 96.5 0.00099 3.4E-08 57.2 2.7 26 99-124 31-56 (229)
229 1kag_A SKI, shikimate kinase I 96.5 0.0014 4.8E-08 53.2 3.5 25 101-125 3-27 (173)
230 1coo_A RNA polymerase alpha su 96.5 0.003 1E-07 45.9 4.7 55 4-58 24-78 (98)
231 3pfi_A Holliday junction ATP-d 96.5 0.013 4.3E-07 53.1 10.2 23 104-126 57-79 (338)
232 3cm0_A Adenylate kinase; ATP-b 96.5 0.0014 4.9E-08 53.9 3.5 27 100-126 2-28 (186)
233 2jeo_A Uridine-cytidine kinase 96.5 0.0015 5.1E-08 56.6 3.6 35 90-125 14-48 (245)
234 2qt1_A Nicotinamide riboside k 96.5 0.0015 5.1E-08 54.9 3.5 38 99-146 18-55 (207)
235 2p5t_B PEZT; postsegregational 96.5 0.0015 5E-08 57.0 3.5 38 99-145 29-66 (253)
236 2ghi_A Transport protein; mult 96.5 0.0013 4.3E-08 57.7 3.0 26 99-124 43-68 (260)
237 2bdt_A BH3686; alpha-beta prot 96.5 0.0013 4.5E-08 54.3 3.0 23 102-124 2-24 (189)
238 3asz_A Uridine kinase; cytidin 96.5 0.0015 5E-08 55.1 3.3 38 100-146 4-41 (211)
239 3vr4_A V-type sodium ATPase ca 96.4 0.0053 1.8E-07 59.1 7.1 55 81-145 213-267 (600)
240 1ixz_A ATP-dependent metallopr 96.4 0.0028 9.7E-08 55.0 4.9 26 99-126 48-73 (254)
241 3b85_A Phosphate starvation-in 96.4 0.00097 3.3E-08 56.4 1.8 27 99-125 19-45 (208)
242 3aez_A Pantothenate kinase; tr 96.4 0.0018 6.3E-08 58.2 3.7 45 99-147 87-131 (312)
243 2qgz_A Helicase loader, putati 96.4 0.0031 1.1E-07 56.7 5.2 37 102-144 152-189 (308)
244 1kht_A Adenylate kinase; phosp 96.4 0.0022 7.6E-08 52.8 3.9 25 102-126 3-27 (192)
245 1ly1_A Polynucleotide kinase; 96.4 0.002 6.7E-08 52.6 3.4 22 103-124 3-24 (181)
246 1vt4_I APAF-1 related killer D 96.4 0.019 6.4E-07 59.5 11.1 60 90-153 139-198 (1221)
247 1sq5_A Pantothenate kinase; P- 96.4 0.0033 1.1E-07 56.5 5.1 43 99-146 77-120 (308)
248 1svm_A Large T antigen; AAA+ f 96.3 0.0027 9.2E-08 58.7 4.5 28 98-125 165-192 (377)
249 2c61_A A-type ATP synthase non 96.3 0.0035 1.2E-07 59.1 5.3 61 81-145 133-193 (469)
250 3ney_A 55 kDa erythrocyte memb 96.3 0.0026 8.8E-08 53.2 3.9 27 100-126 17-43 (197)
251 1y63_A LMAJ004144AAA protein; 96.3 0.0028 9.7E-08 52.2 4.2 27 99-125 7-33 (184)
252 3kb2_A SPBC2 prophage-derived 96.3 0.0023 7.9E-08 51.7 3.6 23 104-126 3-25 (173)
253 3fkq_A NTRC-like two-domain pr 96.3 0.017 5.9E-07 53.2 9.9 40 100-145 141-181 (373)
254 2woo_A ATPase GET3; tail-ancho 96.3 0.012 4.3E-07 53.2 8.7 40 102-147 19-58 (329)
255 1qvr_A CLPB protein; coiled co 96.3 0.011 3.7E-07 60.8 9.1 113 103-253 192-306 (854)
256 1ypw_A Transitional endoplasmi 96.3 0.00051 1.8E-08 70.0 -0.8 30 97-126 506-535 (806)
257 3a00_A Guanylate kinase, GMP k 96.3 0.002 6.9E-08 53.2 3.0 25 102-126 1-25 (186)
258 3llm_A ATP-dependent RNA helic 96.3 0.012 4.3E-07 50.3 8.1 45 99-144 73-117 (235)
259 3umf_A Adenylate kinase; rossm 96.3 0.0032 1.1E-07 53.5 4.2 29 98-126 25-53 (217)
260 2o8b_B DNA mismatch repair pro 96.3 0.0079 2.7E-07 62.7 7.9 47 203-257 867-913 (1022)
261 1nks_A Adenylate kinase; therm 96.3 0.0044 1.5E-07 51.0 5.0 35 104-144 3-37 (194)
262 2plr_A DTMP kinase, probable t 96.2 0.003 1E-07 52.9 3.9 26 101-126 3-28 (213)
263 1m7g_A Adenylylsulfate kinase; 96.2 0.0034 1.2E-07 52.9 4.2 41 99-144 22-62 (211)
264 1yrb_A ATP(GTP)binding protein 96.2 0.0064 2.2E-07 52.8 6.0 40 100-146 12-51 (262)
265 3vr4_D V-type sodium ATPase su 96.2 0.0046 1.6E-07 58.0 5.1 61 81-145 132-192 (465)
266 2c95_A Adenylate kinase 1; tra 96.2 0.0029 1E-07 52.3 3.5 27 100-126 7-33 (196)
267 2bbs_A Cystic fibrosis transme 96.2 0.0021 7.3E-08 57.2 2.8 25 99-123 61-85 (290)
268 3iij_A Coilin-interacting nucl 96.2 0.0034 1.1E-07 51.4 3.8 28 99-126 8-35 (180)
269 1tev_A UMP-CMP kinase; ploop, 96.2 0.0032 1.1E-07 51.9 3.7 25 102-126 3-27 (196)
270 1iy2_A ATP-dependent metallopr 96.2 0.0046 1.6E-07 54.5 4.9 26 99-126 72-97 (278)
271 1u0j_A DNA replication protein 96.2 0.0053 1.8E-07 53.6 5.0 36 91-126 93-128 (267)
272 3n70_A Transport activator; si 96.2 0.0036 1.2E-07 49.4 3.7 37 102-145 24-60 (145)
273 3lw7_A Adenylate kinase relate 96.2 0.0027 9.3E-08 51.3 3.1 19 104-122 3-21 (179)
274 2wwf_A Thymidilate kinase, put 96.2 0.0037 1.2E-07 52.5 4.0 28 99-126 7-34 (212)
275 2ze6_A Isopentenyl transferase 96.1 0.0031 1.1E-07 54.9 3.6 24 103-126 2-25 (253)
276 3trf_A Shikimate kinase, SK; a 96.1 0.0038 1.3E-07 51.2 3.9 25 102-126 5-29 (185)
277 4fcw_A Chaperone protein CLPB; 96.1 0.0053 1.8E-07 54.8 5.1 40 101-146 46-85 (311)
278 1nn5_A Similar to deoxythymidy 96.1 0.0038 1.3E-07 52.5 3.9 27 100-126 7-33 (215)
279 3fwy_A Light-independent proto 96.1 0.025 8.7E-07 50.8 9.5 42 99-146 45-86 (314)
280 3gqb_A V-type ATP synthase alp 96.1 0.0054 1.9E-07 58.7 5.2 55 81-145 202-256 (578)
281 2v54_A DTMP kinase, thymidylat 96.1 0.004 1.4E-07 51.9 3.9 27 100-126 2-28 (204)
282 2bbw_A Adenylate kinase 4, AK4 96.1 0.0033 1.1E-07 54.4 3.5 26 101-126 26-51 (246)
283 2vli_A Antibiotic resistance p 96.1 0.003 1E-07 51.6 3.0 26 101-126 4-29 (183)
284 3t61_A Gluconokinase; PSI-biol 96.1 0.0038 1.3E-07 52.1 3.6 25 102-126 18-42 (202)
285 2xj4_A MIPZ; replication, cell 96.0 0.025 8.4E-07 50.0 9.0 37 104-146 7-43 (286)
286 1p9r_A General secretion pathw 96.0 0.0075 2.6E-07 56.5 5.8 39 100-144 165-203 (418)
287 3end_A Light-independent proto 96.0 0.0061 2.1E-07 54.5 5.0 60 82-147 16-80 (307)
288 2bwj_A Adenylate kinase 5; pho 96.0 0.0027 9.1E-08 52.7 2.4 27 100-126 10-36 (199)
289 2pjz_A Hypothetical protein ST 96.0 0.0031 1.1E-07 55.2 2.9 25 99-124 28-52 (263)
290 1aky_A Adenylate kinase; ATP:A 96.0 0.0049 1.7E-07 52.2 4.0 26 101-126 3-28 (220)
291 2qm8_A GTPase/ATPase; G protei 96.0 0.0072 2.4E-07 55.0 5.3 41 99-145 52-92 (337)
292 2cdn_A Adenylate kinase; phosp 96.0 0.0051 1.7E-07 51.3 4.0 27 100-126 18-44 (201)
293 1zd8_A GTP:AMP phosphotransfer 96.0 0.0042 1.4E-07 53.0 3.5 28 99-126 4-31 (227)
294 2axn_A 6-phosphofructo-2-kinas 96.0 0.093 3.2E-06 50.6 13.3 39 101-145 34-72 (520)
295 2gno_A DNA polymerase III, gam 96.0 0.037 1.3E-06 49.5 9.8 25 102-126 18-42 (305)
296 1ofh_A ATP-dependent HSL prote 95.9 0.007 2.4E-07 53.9 5.1 35 102-145 50-84 (310)
297 2a5y_B CED-4; apoptosis; HET: 95.9 0.021 7.2E-07 55.5 8.8 43 101-147 151-195 (549)
298 2ewv_A Twitching motility prot 95.9 0.0053 1.8E-07 56.7 4.2 29 99-127 133-161 (372)
299 4e22_A Cytidylate kinase; P-lo 95.9 0.005 1.7E-07 53.5 3.7 27 100-126 25-51 (252)
300 2c9o_A RUVB-like 1; hexameric 95.9 0.011 3.7E-07 56.2 6.2 29 98-126 59-87 (456)
301 4eaq_A DTMP kinase, thymidylat 95.9 0.0062 2.1E-07 52.1 4.1 28 99-126 23-50 (229)
302 2i3b_A HCR-ntpase, human cance 95.8 0.0045 1.5E-07 51.4 3.0 25 102-126 1-25 (189)
303 2qmh_A HPR kinase/phosphorylas 95.8 0.005 1.7E-07 51.3 3.2 26 101-126 33-58 (205)
304 1kao_A RAP2A; GTP-binding prot 95.8 0.24 8.3E-06 38.7 13.4 23 104-126 5-27 (167)
305 3sr0_A Adenylate kinase; phosp 95.8 0.0059 2E-07 51.4 3.7 31 104-145 2-32 (206)
306 2bjv_A PSP operon transcriptio 95.8 0.0071 2.4E-07 52.8 4.4 38 103-146 30-67 (265)
307 1xjc_A MOBB protein homolog; s 95.8 0.011 3.9E-07 47.9 5.2 38 103-146 5-42 (169)
308 1njg_A DNA polymerase III subu 95.8 0.0067 2.3E-07 51.5 4.0 25 103-127 46-70 (250)
309 1cke_A CK, MSSA, protein (cyti 95.8 0.0072 2.5E-07 51.3 4.1 25 102-126 5-29 (227)
310 2iyv_A Shikimate kinase, SK; t 95.7 0.0056 1.9E-07 50.2 3.2 24 103-126 3-26 (184)
311 3gqb_B V-type ATP synthase bet 95.7 0.005 1.7E-07 57.8 3.1 46 81-128 128-173 (464)
312 1np6_A Molybdopterin-guanine d 95.7 0.013 4.3E-07 47.9 5.3 29 99-127 3-31 (174)
313 1r6b_X CLPA protein; AAA+, N-t 95.7 0.019 6.4E-07 58.2 7.7 28 100-127 205-232 (758)
314 2r2a_A Uncharacterized protein 95.7 0.01 3.5E-07 49.6 4.8 24 103-126 6-29 (199)
315 1ye8_A Protein THEP1, hypothet 95.7 0.0059 2E-07 50.1 3.2 23 104-126 2-24 (178)
316 2ce2_X GTPase HRAS; signaling 95.7 0.3 1E-05 38.1 13.4 22 105-126 6-27 (166)
317 1via_A Shikimate kinase; struc 95.7 0.0063 2.2E-07 49.5 3.3 23 104-126 6-28 (175)
318 1in4_A RUVB, holliday junction 95.7 0.02 6.8E-07 51.9 6.9 24 103-126 52-75 (334)
319 1ukz_A Uridylate kinase; trans 95.6 0.0082 2.8E-07 50.0 4.0 24 102-125 15-38 (203)
320 3io3_A DEHA2D07832P; chaperone 95.6 0.016 5.3E-07 53.0 6.1 49 90-146 8-58 (348)
321 3tlx_A Adenylate kinase 2; str 95.6 0.0083 2.8E-07 51.8 4.1 26 101-126 28-53 (243)
322 3kta_A Chromosome segregation 95.6 0.0078 2.7E-07 49.2 3.7 26 99-125 24-49 (182)
323 2gza_A Type IV secretion syste 95.6 0.0041 1.4E-07 57.2 2.2 39 99-144 172-210 (361)
324 3be4_A Adenylate kinase; malar 95.6 0.0076 2.6E-07 51.0 3.7 27 100-126 3-29 (217)
325 1zak_A Adenylate kinase; ATP:A 95.6 0.0071 2.4E-07 51.3 3.5 26 101-126 4-29 (222)
326 2r62_A Cell division protease 95.6 0.0038 1.3E-07 54.6 1.8 22 105-126 47-68 (268)
327 1cp2_A CP2, nitrogenase iron p 95.6 0.012 4E-07 51.5 4.9 39 104-148 3-41 (269)
328 1ek0_A Protein (GTP-binding pr 95.6 0.28 9.6E-06 38.6 12.9 22 105-126 6-27 (170)
329 2jaq_A Deoxyguanosine kinase; 95.6 0.0083 2.8E-07 49.8 3.7 23 104-126 2-24 (205)
330 3tqc_A Pantothenate kinase; bi 95.6 0.013 4.4E-07 52.8 5.2 40 103-146 93-132 (321)
331 2vp4_A Deoxynucleoside kinase; 95.6 0.0053 1.8E-07 52.5 2.5 27 98-124 16-42 (230)
332 1ihu_A Arsenical pump-driving 95.6 0.011 3.7E-07 58.1 5.1 52 89-146 313-365 (589)
333 1odf_A YGR205W, hypothetical 3 95.6 0.009 3.1E-07 53.1 4.1 29 99-127 28-56 (290)
334 1sxj_C Activator 1 40 kDa subu 95.5 0.0057 1.9E-07 55.6 2.8 23 105-127 49-71 (340)
335 3bfv_A CAPA1, CAPB2, membrane 95.5 0.015 5.3E-07 51.0 5.5 41 101-147 81-122 (271)
336 2efe_B Small GTP-binding prote 95.5 0.18 6E-06 40.4 11.7 23 104-126 14-36 (181)
337 1qf9_A UMP/CMP kinase, protein 95.5 0.0081 2.8E-07 49.4 3.5 25 102-126 6-30 (194)
338 1hqc_A RUVB; extended AAA-ATPa 95.5 0.017 5.8E-07 51.8 5.9 25 102-126 38-62 (324)
339 3fb4_A Adenylate kinase; psych 95.5 0.0087 3E-07 50.4 3.7 23 104-126 2-24 (216)
340 4b3f_X DNA-binding protein smu 95.5 0.012 4E-07 58.5 5.1 40 100-145 203-242 (646)
341 1sxj_D Activator 1 41 kDa subu 95.5 0.012 4E-07 53.5 4.8 53 88-145 46-98 (353)
342 3d3q_A TRNA delta(2)-isopenten 95.5 0.014 4.9E-07 52.8 5.2 33 103-146 8-40 (340)
343 2pbr_A DTMP kinase, thymidylat 95.5 0.0092 3.1E-07 49.1 3.7 23 104-126 2-24 (195)
344 1ex7_A Guanylate kinase; subst 95.5 0.0079 2.7E-07 49.7 3.2 23 104-126 3-25 (186)
345 3sfz_A APAF-1, apoptotic pepti 95.5 0.024 8.3E-07 60.3 7.8 56 90-147 135-190 (1249)
346 2yv5_A YJEQ protein; hydrolase 95.5 0.009 3.1E-07 53.5 3.7 32 90-123 155-186 (302)
347 1e6c_A Shikimate kinase; phosp 95.4 0.0082 2.8E-07 48.5 3.2 24 103-126 3-26 (173)
348 1sxj_B Activator 1 37 kDa subu 95.4 0.013 4.5E-07 52.3 4.9 38 105-146 45-82 (323)
349 3cio_A ETK, tyrosine-protein k 95.4 0.016 5.4E-07 51.7 5.3 41 101-147 103-144 (299)
350 1zuh_A Shikimate kinase; alpha 95.4 0.01 3.5E-07 47.8 3.7 24 103-126 8-31 (168)
351 2rcn_A Probable GTPase ENGC; Y 95.4 0.011 3.9E-07 54.0 4.3 34 86-124 204-237 (358)
352 2z0h_A DTMP kinase, thymidylat 95.4 0.0098 3.3E-07 49.1 3.6 23 104-126 2-24 (197)
353 4dsu_A GTPase KRAS, isoform 2B 95.4 0.17 6E-06 40.7 11.3 22 105-126 7-28 (189)
354 1jjv_A Dephospho-COA kinase; P 95.4 0.0086 2.9E-07 50.1 3.3 21 104-124 4-24 (206)
355 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.0047 1.6E-07 56.0 1.7 40 99-145 168-207 (330)
356 1um8_A ATP-dependent CLP prote 95.4 0.014 4.8E-07 53.8 5.0 37 100-145 70-106 (376)
357 3dl0_A Adenylate kinase; phosp 95.4 0.0099 3.4E-07 50.1 3.6 23 104-126 2-24 (216)
358 3hws_A ATP-dependent CLP prote 95.4 0.013 4.5E-07 53.7 4.6 35 101-144 50-84 (363)
359 3clv_A RAB5 protein, putative; 95.4 0.086 2.9E-06 43.1 9.4 23 104-126 9-31 (208)
360 2va8_A SSO2462, SKI2-type heli 95.4 0.07 2.4E-06 53.6 10.3 39 101-144 45-83 (715)
361 3a8t_A Adenylate isopentenyltr 95.4 0.0099 3.4E-07 53.8 3.6 26 100-125 38-63 (339)
362 2afh_E Nitrogenase iron protei 95.4 0.014 4.7E-07 51.7 4.6 38 104-147 4-41 (289)
363 1ihu_A Arsenical pump-driving 95.3 0.017 5.9E-07 56.6 5.5 40 101-146 7-46 (589)
364 2npi_A Protein CLP1; CLP1-PCF1 95.3 0.0086 2.9E-07 56.8 3.2 28 99-126 135-162 (460)
365 3nwj_A ATSK2; P loop, shikimat 95.3 0.008 2.7E-07 52.2 2.7 37 89-126 33-72 (250)
366 2p67_A LAO/AO transport system 95.3 0.017 5.9E-07 52.5 5.1 42 99-146 53-94 (341)
367 1r8s_A ADP-ribosylation factor 95.3 0.16 5.6E-06 39.9 10.5 22 105-126 3-24 (164)
368 2a9k_A RAS-related protein RAL 95.3 0.27 9.2E-06 39.4 12.0 23 104-126 20-42 (187)
369 2qag_B Septin-6, protein NEDD5 95.3 0.0094 3.2E-07 55.8 3.3 34 91-125 30-65 (427)
370 2if2_A Dephospho-COA kinase; a 95.3 0.0094 3.2E-07 49.7 3.0 21 104-124 3-23 (204)
371 4ag6_A VIRB4 ATPase, type IV s 95.2 0.025 8.4E-07 52.5 6.0 40 100-145 33-72 (392)
372 1vht_A Dephospho-COA kinase; s 95.2 0.012 4.2E-07 49.6 3.6 24 101-124 3-26 (218)
373 2pt5_A Shikimate kinase, SK; a 95.2 0.013 4.5E-07 47.0 3.6 23 104-126 2-24 (168)
374 1ak2_A Adenylate kinase isoenz 95.2 0.015 5E-07 49.8 4.1 26 101-126 15-40 (233)
375 1ojl_A Transcriptional regulat 95.1 0.016 5.3E-07 51.9 4.2 40 101-146 24-63 (304)
376 2xb4_A Adenylate kinase; ATP-b 95.1 0.014 4.8E-07 49.6 3.7 23 104-126 2-24 (223)
377 3m6a_A ATP-dependent protease 95.1 0.014 4.7E-07 56.7 4.0 26 101-126 107-132 (543)
378 1a5t_A Delta prime, HOLB; zinc 95.1 0.18 6.3E-06 45.4 11.3 27 102-128 24-50 (334)
379 3r20_A Cytidylate kinase; stru 95.1 0.015 5.1E-07 49.8 3.7 25 102-126 9-33 (233)
380 1t9h_A YLOQ, probable GTPase E 95.0 0.0041 1.4E-07 55.7 0.1 26 99-124 170-195 (307)
381 2zj8_A DNA helicase, putative 95.0 0.06 2.1E-06 54.1 8.7 133 101-255 38-178 (720)
382 1g3q_A MIND ATPase, cell divis 95.0 0.021 7.3E-07 48.6 4.7 37 104-146 5-41 (237)
383 1gtv_A TMK, thymidylate kinase 95.0 0.0072 2.5E-07 50.7 1.6 24 104-127 2-25 (214)
384 2ph1_A Nucleotide-binding prot 95.0 0.021 7.3E-07 49.7 4.7 39 104-148 21-59 (262)
385 2bov_A RAla, RAS-related prote 95.0 0.57 2E-05 38.2 13.5 23 104-126 16-38 (206)
386 4edh_A DTMP kinase, thymidylat 95.0 0.028 9.7E-07 47.4 5.3 38 100-143 4-41 (213)
387 2r44_A Uncharacterized protein 95.0 0.026 8.9E-07 50.9 5.4 25 102-126 46-70 (331)
388 1uf9_A TT1252 protein; P-loop, 95.0 0.016 5.4E-07 48.1 3.5 23 102-124 8-30 (203)
389 3cwq_A Para family chromosome 95.0 0.027 9.3E-07 47.3 5.1 38 104-148 3-40 (209)
390 3foz_A TRNA delta(2)-isopenten 94.9 0.018 6.2E-07 51.3 3.9 25 102-126 10-34 (316)
391 1uj2_A Uridine-cytidine kinase 94.9 0.017 5.7E-07 50.1 3.6 43 103-146 23-65 (252)
392 1a7j_A Phosphoribulokinase; tr 94.9 0.014 4.8E-07 51.9 3.2 41 101-147 4-44 (290)
393 3exa_A TRNA delta(2)-isopenten 94.9 0.017 5.8E-07 51.6 3.7 24 102-125 3-26 (322)
394 3crm_A TRNA delta(2)-isopenten 94.9 0.016 5.6E-07 52.1 3.6 24 103-126 6-29 (323)
395 2chq_A Replication factor C sm 94.9 0.022 7.5E-07 50.8 4.5 23 105-127 41-63 (319)
396 3tqf_A HPR(Ser) kinase; transf 94.9 0.017 5.8E-07 46.8 3.3 26 101-126 15-40 (181)
397 1q3t_A Cytidylate kinase; nucl 94.8 0.018 6.2E-07 49.3 3.7 28 99-126 13-40 (236)
398 3ea0_A ATPase, para family; al 94.8 0.036 1.2E-06 47.4 5.6 41 102-147 4-45 (245)
399 1iqp_A RFCS; clamp loader, ext 94.8 0.016 5.3E-07 52.0 3.4 23 105-127 49-71 (327)
400 1u0l_A Probable GTPase ENGC; p 94.8 0.012 4.2E-07 52.6 2.6 33 90-124 159-191 (301)
401 3la6_A Tyrosine-protein kinase 94.8 0.033 1.1E-06 49.3 5.4 39 103-147 94-132 (286)
402 1e4v_A Adenylate kinase; trans 94.8 0.016 5.5E-07 48.8 3.2 23 104-126 2-24 (214)
403 3q9l_A Septum site-determining 94.8 0.026 9E-07 48.8 4.7 37 104-146 5-41 (260)
404 3zvl_A Bifunctional polynucleo 94.8 0.015 5E-07 54.6 3.2 24 101-124 257-280 (416)
405 1ltq_A Polynucleotide kinase; 94.8 0.017 5.6E-07 51.4 3.4 23 103-125 3-25 (301)
406 3co5_A Putative two-component 94.8 0.0061 2.1E-07 47.9 0.5 21 103-123 28-48 (143)
407 3tkl_A RAS-related protein RAB 94.8 0.47 1.6E-05 38.4 12.2 23 104-126 18-40 (196)
408 3k9g_A PF-32 protein; ssgcid, 94.7 0.023 7.9E-07 49.5 4.2 40 102-148 27-67 (267)
409 2www_A Methylmalonic aciduria 94.7 0.035 1.2E-06 50.7 5.5 40 100-145 72-111 (349)
410 1wcv_1 SOJ, segregation protei 94.7 0.025 8.6E-07 49.1 4.3 40 102-147 6-46 (257)
411 2v6i_A RNA helicase; membrane, 94.7 0.14 4.9E-06 48.0 9.7 38 101-144 1-39 (431)
412 2oze_A ORF delta'; para, walke 94.7 0.025 8.5E-07 50.2 4.3 40 102-147 34-76 (298)
413 2grj_A Dephospho-COA kinase; T 94.7 0.022 7.5E-07 47.3 3.6 24 102-125 12-35 (192)
414 2oap_1 GSPE-2, type II secreti 94.7 0.01 3.5E-07 57.1 1.8 39 99-144 257-295 (511)
415 2jlq_A Serine protease subunit 94.7 0.084 2.9E-06 49.9 8.1 39 100-144 17-56 (451)
416 1pui_A ENGB, probable GTP-bind 94.6 0.0095 3.3E-07 49.7 1.2 32 89-123 16-47 (210)
417 3ake_A Cytidylate kinase; CMP 94.5 0.024 8.4E-07 47.1 3.7 23 104-126 4-26 (208)
418 3v9p_A DTMP kinase, thymidylat 94.5 0.023 7.8E-07 48.5 3.5 29 98-126 21-49 (227)
419 3cr8_A Sulfate adenylyltranfer 94.5 0.018 6E-07 55.9 3.0 42 99-145 366-407 (552)
420 4f92_B U5 small nuclear ribonu 94.4 0.14 4.9E-06 56.3 10.2 142 100-255 940-1092(1724)
421 2f6r_A COA synthase, bifunctio 94.3 0.024 8.3E-07 50.0 3.4 22 102-123 75-96 (281)
422 1zd9_A ADP-ribosylation factor 94.3 0.2 6.9E-06 40.6 8.8 24 103-126 23-46 (188)
423 2wsm_A Hydrogenase expression/ 94.3 0.052 1.8E-06 45.6 5.2 37 103-146 31-67 (221)
424 3e1s_A Exodeoxyribonuclease V, 94.3 0.042 1.4E-06 53.7 5.1 38 102-145 204-241 (574)
425 2f1r_A Molybdopterin-guanine d 94.2 0.018 6.1E-07 46.9 2.1 25 103-127 3-27 (171)
426 3ux8_A Excinuclease ABC, A sub 94.2 0.019 6.5E-07 57.3 2.5 43 204-256 564-606 (670)
427 2p6r_A Afuhel308 helicase; pro 94.2 0.076 2.6E-06 53.2 7.0 133 102-255 40-181 (702)
428 2ocp_A DGK, deoxyguanosine kin 94.2 0.031 1.1E-06 47.9 3.6 26 101-126 1-26 (241)
429 1jr3_A DNA polymerase III subu 94.1 0.035 1.2E-06 50.7 4.1 25 103-127 39-63 (373)
430 3q3j_B RHO-related GTP-binding 94.1 0.085 2.9E-06 44.2 6.2 23 104-126 29-51 (214)
431 3tmk_A Thymidylate kinase; pho 94.1 0.037 1.3E-06 46.8 3.9 27 100-126 3-29 (216)
432 3upu_A ATP-dependent DNA helic 94.1 0.04 1.4E-06 52.3 4.6 37 104-145 47-83 (459)
433 3lv8_A DTMP kinase, thymidylat 94.1 0.036 1.2E-06 47.5 3.8 31 97-127 22-52 (236)
434 1g41_A Heat shock protein HSLU 94.0 0.047 1.6E-06 51.3 4.8 22 105-126 53-74 (444)
435 3qxc_A Dethiobiotin synthetase 94.0 1 3.5E-05 38.5 12.9 49 83-143 9-57 (242)
436 2xau_A PRE-mRNA-splicing facto 94.0 0.11 3.6E-06 52.7 7.7 29 99-127 106-134 (773)
437 3eph_A TRNA isopentenyltransfe 94.0 0.034 1.2E-06 51.5 3.6 24 103-126 3-26 (409)
438 1g8p_A Magnesium-chelatase 38 94.0 0.019 6.4E-07 52.1 1.9 22 105-126 48-69 (350)
439 4gzl_A RAS-related C3 botulinu 94.0 0.093 3.2E-06 43.5 6.1 25 103-127 31-55 (204)
440 1tq4_A IIGP1, interferon-induc 94.0 0.02 6.7E-07 53.5 2.0 21 104-124 71-91 (413)
441 2ga8_A Hypothetical 39.9 kDa p 94.0 0.037 1.3E-06 50.4 3.7 27 100-126 20-48 (359)
442 2gj8_A MNME, tRNA modification 93.9 0.033 1.1E-06 44.9 3.2 24 101-124 3-26 (172)
443 2iw3_A Elongation factor 3A; a 93.9 0.029 9.8E-07 57.9 3.2 26 99-124 458-483 (986)
444 3qf7_A RAD50; ABC-ATPase, ATPa 93.9 0.038 1.3E-06 50.7 3.8 43 203-255 302-344 (365)
445 3fgn_A Dethiobiotin synthetase 93.7 0.48 1.6E-05 40.9 10.4 54 83-143 9-62 (251)
446 3pg5_A Uncharacterized protein 93.7 0.031 1.1E-06 51.3 2.9 39 104-148 4-42 (361)
447 2h57_A ADP-ribosylation factor 93.7 0.2 6.7E-06 40.7 7.6 24 103-126 22-45 (190)
448 1oix_A RAS-related protein RAB 93.7 0.033 1.1E-06 45.8 2.8 23 104-126 31-53 (191)
449 1f2t_A RAD50 ABC-ATPase; DNA d 93.7 0.047 1.6E-06 43.2 3.6 22 103-124 24-45 (149)
450 2f9l_A RAB11B, member RAS onco 93.7 0.036 1.2E-06 45.8 3.0 22 104-125 7-28 (199)
451 3t1o_A Gliding protein MGLA; G 93.7 0.3 1E-05 39.6 8.7 20 105-125 17-36 (198)
452 3euj_A Chromosome partition pr 93.7 0.04 1.4E-06 52.4 3.7 26 99-125 27-52 (483)
453 1byi_A Dethiobiotin synthase; 93.7 0.063 2.1E-06 45.2 4.6 34 104-143 4-37 (224)
454 3pxi_A Negative regulator of g 93.7 0.07 2.4E-06 54.0 5.6 36 104-145 523-558 (758)
455 3k1j_A LON protease, ATP-depen 93.6 0.028 9.6E-07 55.3 2.6 28 99-126 57-84 (604)
456 3i5x_A ATP-dependent RNA helic 93.6 0.89 3E-05 43.9 13.3 53 90-145 102-155 (563)
457 3ld9_A DTMP kinase, thymidylat 93.6 0.055 1.9E-06 46.0 4.1 40 100-145 19-59 (223)
458 2wji_A Ferrous iron transport 93.6 0.04 1.4E-06 44.0 3.0 21 104-124 5-25 (165)
459 2j0v_A RAC-like GTP-binding pr 93.6 0.12 4E-06 43.0 6.1 23 104-126 11-33 (212)
460 2gk6_A Regulator of nonsense t 93.6 0.071 2.4E-06 52.6 5.4 39 102-145 195-233 (624)
461 4tmk_A Protein (thymidylate ki 93.5 0.052 1.8E-06 45.8 3.8 27 101-127 2-28 (213)
462 4hlc_A DTMP kinase, thymidylat 93.5 0.089 3E-06 44.0 5.2 35 102-143 2-36 (205)
463 1e9r_A Conjugal transfer prote 93.5 0.061 2.1E-06 50.5 4.6 38 102-145 53-90 (437)
464 3sop_A Neuronal-specific septi 93.5 0.039 1.3E-06 48.4 3.0 23 104-126 4-26 (270)
465 2zej_A Dardarin, leucine-rich 93.4 0.036 1.2E-06 45.1 2.5 20 105-124 5-24 (184)
466 1z2a_A RAS-related protein RAB 93.3 0.047 1.6E-06 43.2 3.0 23 104-126 7-29 (168)
467 2dyk_A GTP-binding protein; GT 93.3 0.049 1.7E-06 42.8 3.0 20 105-124 4-23 (161)
468 2hf9_A Probable hydrogenase ni 93.2 0.053 1.8E-06 45.7 3.4 24 104-127 40-63 (226)
469 1p5z_B DCK, deoxycytidine kina 93.2 0.027 9.1E-07 49.1 1.5 26 100-125 22-47 (263)
470 3pxg_A Negative regulator of g 93.2 0.058 2E-06 51.3 4.0 27 101-127 200-226 (468)
471 1nij_A Hypothetical protein YJ 93.2 0.038 1.3E-06 49.7 2.6 24 102-125 4-27 (318)
472 2vf7_A UVRA2, excinuclease ABC 93.2 0.03 1E-06 56.9 2.0 26 99-124 33-58 (842)
473 3fho_A ATP-dependent RNA helic 93.2 0.24 8.3E-06 47.4 8.3 50 90-145 149-198 (508)
474 3nbx_X ATPase RAVA; AAA+ ATPas 93.1 0.023 7.8E-07 54.5 0.9 26 101-126 40-65 (500)
475 1e69_A Chromosome segregation 93.1 0.051 1.7E-06 48.9 3.2 25 99-124 22-46 (322)
476 2h92_A Cytidylate kinase; ross 93.0 0.059 2E-06 45.3 3.3 24 102-125 3-26 (219)
477 2o5v_A DNA replication and rep 93.0 0.059 2E-06 49.3 3.5 25 99-124 24-48 (359)
478 1w1w_A Structural maintenance 93.0 0.062 2.1E-06 50.4 3.8 27 99-125 23-49 (430)
479 1u8z_A RAS-related protein RAL 92.9 0.058 2E-06 42.6 3.0 22 105-126 7-28 (168)
480 2nzj_A GTP-binding protein REM 92.9 0.057 2E-06 43.1 3.0 20 105-124 7-26 (175)
481 1x6v_B Bifunctional 3'-phospho 92.9 0.088 3E-06 51.7 4.8 37 101-143 51-87 (630)
482 3igf_A ALL4481 protein; two-do 92.9 0.058 2E-06 49.6 3.3 36 103-144 3-38 (374)
483 3sqw_A ATP-dependent RNA helic 92.9 1.4 4.6E-05 42.9 13.3 52 90-144 51-103 (579)
484 3pih_A Uvrabc system protein A 92.9 0.05 1.7E-06 55.8 3.1 42 204-255 826-867 (916)
485 3q85_A GTP-binding protein REM 92.9 0.06 2.1E-06 42.7 3.0 19 105-123 5-23 (169)
486 1m8p_A Sulfate adenylyltransfe 92.8 0.07 2.4E-06 52.0 3.9 41 100-145 394-434 (573)
487 2wjg_A FEOB, ferrous iron tran 92.8 0.061 2.1E-06 43.6 3.0 22 104-125 9-30 (188)
488 2iw3_A Elongation factor 3A; a 92.8 0.032 1.1E-06 57.5 1.5 26 99-124 696-721 (986)
489 2erx_A GTP-binding protein DI- 92.7 0.064 2.2E-06 42.6 3.0 21 105-125 6-26 (172)
490 1wms_A RAB-9, RAB9, RAS-relate 92.7 0.065 2.2E-06 42.9 3.0 21 105-125 10-30 (177)
491 1z08_A RAS-related protein RAB 92.7 0.066 2.3E-06 42.5 3.0 23 104-126 8-30 (170)
492 1g16_A RAS-related protein SEC 92.7 0.061 2.1E-06 42.6 2.8 21 105-125 6-26 (170)
493 1ky3_A GTP-binding protein YPT 92.6 0.066 2.3E-06 43.0 3.0 23 104-126 10-32 (182)
494 1c1y_A RAS-related protein RAP 92.6 0.068 2.3E-06 42.2 3.0 21 105-125 6-26 (167)
495 2ged_A SR-beta, signal recogni 92.6 0.066 2.2E-06 43.7 3.0 24 102-125 48-71 (193)
496 3gmt_A Adenylate kinase; ssgci 92.6 0.077 2.6E-06 45.2 3.5 22 105-126 11-32 (230)
497 1z0j_A RAB-22, RAS-related pro 92.6 0.068 2.3E-06 42.3 3.0 23 104-126 8-30 (170)
498 2gks_A Bifunctional SAT/APS ki 92.6 0.077 2.6E-06 51.4 3.9 50 90-145 356-409 (546)
499 1qvr_A CLPB protein; coiled co 92.5 0.1 3.5E-06 53.5 4.8 38 103-146 589-626 (854)
500 1r6b_X CLPA protein; AAA+, N-t 92.5 0.13 4.6E-06 51.9 5.6 35 103-146 489-523 (758)
No 1
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=100.00 E-value=3.5e-45 Score=339.24 Aligned_cols=308 Identities=24% Similarity=0.292 Sum_probs=197.2
Q ss_pred cccccC---CCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcccCC
Q 035774 5 LISEMR---LPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLG 81 (357)
Q Consensus 5 ~~~~~~---l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (357)
+++.|+ +++.++.+|+++|+.|+++++..++.+|.++.+++++++.++++.+.+.+..++.++.++++.+.+ .
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~ 101 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKM----V 101 (343)
T ss_dssp ------------------------------------------------------------CCSEEHHHHHHHGGG----C
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHhhcccCCCcHHHHHhhhcc----c
Confidence 566665 999999999999999999999999999999999999999999998888788889999998876433 6
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccC
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF 161 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~ 161 (357)
.+++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+..+||.+++|+||++|+.++..++.+++...
T Consensus 102 ~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~- 180 (343)
T 1v5w_A 102 FHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF- 180 (343)
T ss_dssp CCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT-
T ss_pred ceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc-
Confidence 7999999999999999999999999999999999999999999988876677778999999999998888887766431
Q ss_pred chhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhh--cCeeEEEEeccccccCCCCCC--C-CCChHHHHHHHH
Q 035774 162 PEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ--NQVKLLVIDSMEALVPGVHEQ--R-APGQHPLSWHIS 236 (357)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~--~~~~lvvIDsl~~l~~~~~~~--~-~~r~~~~~~i~~ 236 (357)
... ...+++++++.++.+.+++.+++..+...+.+ .++++|||||++.+++....+ . ..|+..+.++++
T Consensus 181 ----g~~--~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~ 254 (343)
T 1v5w_A 181 ----NVD--HDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLS 254 (343)
T ss_dssp ----TCC--HHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHH
T ss_pred ----CCC--HHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 111 23456788888888888888888888888877 789999999999998654321 1 123456889999
Q ss_pred HHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-CCeEEEE
Q 035774 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK-SGQRFMN 315 (357)
Q Consensus 237 ~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~-~~~R~l~ 315 (357)
.|+++++++|++||++||+++..+.. .+|. .+..+|++|..|.+.+++|+.|++. +..|.++
T Consensus 255 ~L~~la~~~~~~Vi~~nq~~~~~~~~-~~~~----------------g~~~~~~gg~~i~~~ad~~l~l~r~~~~~r~~~ 317 (343)
T 1v5w_A 255 RLQKISEEYNVAVFVTNQMTADPGAT-MTFQ----------------ADPKKPIGGHILAHASTTRISLRKGRGELRIAK 317 (343)
T ss_dssp HHHHHHHHHTCEEEEEECC------------------------------------CCTTTTSSSEEEEEEESSTTEEEEE
T ss_pred HHHHHHHHhCCEEEEEeeceecCCCc-cccC----------------CCCCcCCchHHHHHhCCEEEEEEEcCCCEEEEE
Confidence 99999999999999999998764410 0110 1245788999999999999999986 4579999
Q ss_pred EEeCCCCCCceeEEEEcCCCceecc
Q 035774 316 VEKSPTSPPLAFSFTINPSGISLLT 340 (357)
Q Consensus 316 v~K~r~~~~~~~~f~I~~~Gi~~~~ 340 (357)
|+|+|+.|.+.+.|.|+++||.+..
T Consensus 318 v~K~r~~p~~~~~f~I~~~Gi~~~~ 342 (343)
T 1v5w_A 318 IYDSPEMPENEATFAITAGGIGDAK 342 (343)
T ss_dssp EEECTTCCSSCEEEEEETTEEEECC
T ss_pred EEECCCCCCeeEEEEEeCCCccCCC
Confidence 9999999988899999999999865
No 2
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=100.00 E-value=1.8e-44 Score=332.61 Aligned_cols=303 Identities=24% Similarity=0.306 Sum_probs=250.3
Q ss_pred ccccccC-CCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcccCCC
Q 035774 4 KLISEMR-LPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGG 82 (357)
Q Consensus 4 ~~~~~~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (357)
+++..|+ +++++.++|+++|++|+++++..++.+|.++.+++++++.+++.++.+.+..++.++.++++++.. ..
T Consensus 3 ~~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~~~~~~----~~ 78 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQRST----VW 78 (322)
T ss_dssp --CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHHHHHTT----CC
T ss_pred ccHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHHHHhcc----CC
Confidence 4566675 999999999999999999999999999999999999999999999888888899999999875432 67
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---------CCCCCC-CeEEEEeCCCCCchHH
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPA---------HYGGLD-GGVIYIDVESTFTSRR 152 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~---------~~gg~~-~~vl~i~~e~~~~~~r 152 (357)
+++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++++. ..||.+ ++|+||++|+++++.+
T Consensus 79 ~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~ 158 (322)
T 2i1q_A 79 KLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPER 158 (322)
T ss_dssp EECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHH
T ss_pred eecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHH
Confidence 899999999999999999999999999999999999999999876643 334443 7999999999988888
Q ss_pred HHHHHhccCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhh-cCeeEEEEeccccccCCCCCCC---CCCh
Q 035774 153 MIEMGASSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ-NQVKLLVIDSMEALVPGVHEQR---APGQ 228 (357)
Q Consensus 153 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~-~~~~lvvIDsl~~l~~~~~~~~---~~r~ 228 (357)
+.+++... ... .+.+.+++++.++.+.+++.+++..+...+.+ .++++|||||++.++.....+. ..|+
T Consensus 159 l~~~~~~~-----g~~--~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~ 231 (322)
T 2i1q_A 159 IMQMAEHA-----GID--GQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQ 231 (322)
T ss_dssp HHHHHHHH-----TCC--HHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHH
T ss_pred HHHHHHHc-----CCC--HHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHH
Confidence 87765431 111 23345788888888888888888888888877 7899999999999986533221 1234
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe
Q 035774 229 HPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK 308 (357)
Q Consensus 229 ~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~ 308 (357)
..+.++++.|++++++++++||++||+++..+. +| ....+|++|..|.+.+++|+.|++.
T Consensus 232 ~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~---~~-----------------g~~~~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 232 QKLGRHMATLNKLADLFNCVVLVTNQVSAKPDA---FF-----------------GMAEQAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECEECC---------------------------CCEESSHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEECceeecCCC---CC-----------------CCCcCCCCcHHHHhcCcEEEEEEec
Confidence 568899999999999999999999999875431 11 1234688999999999999999987
Q ss_pred C-CeEEEEEEeCCCCCCceeEEEEcCCCce
Q 035774 309 S-GQRFMNVEKSPTSPPLAFSFTINPSGIS 337 (357)
Q Consensus 309 ~-~~R~l~v~K~r~~~~~~~~f~I~~~Gi~ 337 (357)
. ..|.++|.|+|+.|.+.+.|.|+++||+
T Consensus 292 ~~~~r~~~v~k~~~~p~~~~~f~I~~~Gi~ 321 (322)
T 2i1q_A 292 KGDKRVAKLYDSPHLPDAEAIFRITEKGIQ 321 (322)
T ss_dssp STTEEEEEEEECSSSCCEEEEEEEETTEEE
T ss_pred CCCeEEEEEEECCCCCCeEEEEEEeCCCcC
Confidence 4 5899999999999988899999999986
No 3
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=100.00 E-value=3.2e-45 Score=337.37 Aligned_cols=306 Identities=25% Similarity=0.379 Sum_probs=188.0
Q ss_pred ccccccC-CCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcccCCC
Q 035774 4 KLISEMR-LPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGG 82 (357)
Q Consensus 4 ~~~~~~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (357)
.+++.|+ ++++++++|+++|+.|+++++..++.+|.++.+++++++.++++++...+..++.++.++++++.. ..
T Consensus 12 ~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 87 (324)
T 2z43_A 12 KTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALEVKKERMN----VK 87 (324)
T ss_dssp ------------------------------------------------------------CCCCHHHHHHHHCS----CC
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHhhcccCccchhhhhhhhcc----CC
Confidence 4678887 999999999999999999999999999999999999999999998888778889999998865322 67
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCc
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFP 162 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 162 (357)
+++||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.+..+||.+++|+||++|++++..++.+++...
T Consensus 88 ~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~-- 165 (324)
T 2z43_A 88 KISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL-- 165 (324)
T ss_dssp EECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT--
T ss_pred cccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh--
Confidence 899999999999999999999999999999999999999999988776677778999999999998888887766431
Q ss_pred hhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhh-cCeeEEEEeccccccCCCCCCC---CCChHHHHHHHHHH
Q 035774 163 EIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ-NQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLI 238 (357)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~-~~~~lvvIDsl~~l~~~~~~~~---~~r~~~~~~i~~~L 238 (357)
... ...+.+++++.++.+.+++.+++..+...+.+ .++++|||||++.++.....+. ..|+..+.++++.|
T Consensus 166 ---g~~--~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L 240 (324)
T 2z43_A 166 ---GLD--IDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQL 240 (324)
T ss_dssp ---TCC--HHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHH
T ss_pred ---CCC--HHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHH
Confidence 111 23345788888888888887888888888877 7899999999999986533211 12345688999999
Q ss_pred HHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC-CeEEEEEE
Q 035774 239 TSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS-GQRFMNVE 317 (357)
Q Consensus 239 k~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~-~~R~l~v~ 317 (357)
+++++++|++||++||+++..+. +| ....+|++|..|.+.+++|+.+++.. ..|.++|.
T Consensus 241 ~~la~~~~~~Vi~~nq~~~~~~~---~~-----------------~~~~~~~gg~~l~~~~d~~l~l~r~~~~~r~~~v~ 300 (324)
T 2z43_A 241 TRLAEVYDIAVIITNQVMARPDM---FY-----------------GDPTVAVGGHTLYHVPGIRIQLKKSRGNRRIARVV 300 (324)
T ss_dssp HHHHHHHTCEEEEEEEC--------------------------------------------CEEEEEEECSTTEEEEEEE
T ss_pred HHHHHHhCCEEEEEcceeecCCC---cC-----------------CCCCCCCchHHHHhhCcEEEEEEEcCCCeEEEEEE
Confidence 99999999999999999875431 11 12346888999999999999999874 58999999
Q ss_pred eCCCCCCceeEEEEcCCCceecc
Q 035774 318 KSPTSPPLAFSFTINPSGISLLT 340 (357)
Q Consensus 318 K~r~~~~~~~~f~I~~~Gi~~~~ 340 (357)
|+|+.|.+.+.|.|+++||+++.
T Consensus 301 k~~~~p~~~~~f~I~~~Gi~~~~ 323 (324)
T 2z43_A 301 DAPHLPEGEVVFALTEEGIRDAE 323 (324)
T ss_dssp ECSSSCCEEEEEEEETTEEECCC
T ss_pred ECCCCCceEEEEEEeCCCcccCC
Confidence 99999988899999999998764
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=100.00 E-value=3e-43 Score=330.23 Aligned_cols=309 Identities=24% Similarity=0.295 Sum_probs=247.5
Q ss_pred ccccCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcccCCCCCC
Q 035774 6 ISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLP 85 (357)
Q Consensus 6 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (357)
+...|+++..+++|+++|++|+++++..++.+|.+++++++.++.++++++.+.++.++.+|.++++.+.. ..+++
T Consensus 86 l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~~~~~~~~~ta~~l~~~~~~----~~~i~ 161 (400)
T 3lda_A 86 LQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRRSE----LICLT 161 (400)
T ss_dssp GCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHHHSCCSCCCHHHHHHHHHT----SCEEC
T ss_pred HHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhccccCCCHHHHHhhhcc----CCccc
Confidence 34467999999999999999999999999999999999999999999999999888899999999887544 67999
Q ss_pred CCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhh
Q 035774 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIF 165 (357)
Q Consensus 86 TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~ 165 (357)
||++.||++|+||+++|++++|+|+||+|||||+++++.+++.+...||.+++++||++|+.++..++.++....
T Consensus 162 TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~----- 236 (400)
T 3lda_A 162 TGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRF----- 236 (400)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHT-----
T ss_pred cCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHc-----
Confidence 999999999999999999999999999999999999999998887777778999999999988888887765431
Q ss_pred cccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCC---CCChHHHHHHHHHHHHHH
Q 035774 166 HSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISLITSLA 242 (357)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~---~~r~~~~~~i~~~Lk~la 242 (357)
... ...+++++++....+..+....+..+...+...++++||||+++.+++....+. ..|+..+.++++.|++++
T Consensus 237 gl~--~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~la 314 (400)
T 3lda_A 237 GLD--PDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLA 314 (400)
T ss_dssp TCC--HHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--hHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHH
Confidence 111 234567888888888777777777777777778999999999999987654421 124556788999999999
Q ss_pred HHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-CCeEEEEEEeCCC
Q 035774 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK-SGQRFMNVEKSPT 321 (357)
Q Consensus 243 ~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~-~~~R~l~v~K~r~ 321 (357)
+++|++||+++|+....+.. .+|. ....+|++|..|+|.+++|++|++. +..|.++|.|+|+
T Consensus 315 ke~gitVIlv~Hv~~~~~g~-~~~~----------------g~~~~p~gg~~l~~~ad~vl~L~~~~g~~R~l~v~K~R~ 377 (400)
T 3lda_A 315 DQFGVAVVVTNQVVAQVDGG-MAFN----------------PDPKKPIGGNIMAYSSTTRLGFKKGKGCQRLCKVVDSPC 377 (400)
T ss_dssp HHHCCEEEEEEEC-------------------------------------CHHHHHCSEEEEEEECSTTEEEEEEEECSS
T ss_pred HHcCCEEEEEEeecccCCcc-cccc----------------CCCccCCchhHHHHhcceEEEEEecCCCcEEEEEEcCCC
Confidence 99999999999996644311 0110 0123588899999999999999986 4689999999999
Q ss_pred CCCceeEEEEcCCCceeccCC
Q 035774 322 SPPLAFSFTINPSGISLLTDD 342 (357)
Q Consensus 322 ~~~~~~~f~I~~~Gi~~~~~~ 342 (357)
.|+..+.|.|+++||...++.
T Consensus 378 ~p~~e~~F~It~~Gi~~~~~~ 398 (400)
T 3lda_A 378 LPEAECVFAIYEDGVGDPREE 398 (400)
T ss_dssp SCSCEEEEEEETTEEECCC--
T ss_pred CCCCceEEEEeCCcccccccc
Confidence 998889999999999987653
No 5
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=100.00 E-value=1.2e-40 Score=309.05 Aligned_cols=303 Identities=25% Similarity=0.375 Sum_probs=243.2
Q ss_pred ccccccC-CCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHhcccCC
Q 035774 4 KLISEMR-LPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCP-PFQTALLLMEQRAATEHLG 81 (357)
Q Consensus 4 ~~~~~~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 81 (357)
++++.|+ ++++++++|+++|+.|+++++..++.+|.++.++++.++.++++++.+.+.. .+.++.++++++.. .
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~ 110 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRAT----I 110 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHCSTTSCEEHHHHHHHHHT----C
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhhhccccCCccHHHHHhhhcc----C
Confidence 4677774 9999999999999999999999999999999999999999999998888877 89999999887543 6
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccC
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF 161 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~ 161 (357)
.+++||++.||.+|+||+++|++++|+|+||+|||||+++++..++.++..||.+++|+||++++.+...++..+.+..
T Consensus 111 ~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~- 189 (349)
T 1pzn_A 111 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR- 189 (349)
T ss_dssp CEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTT-
T ss_pred CeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHc-
Confidence 7899999999999999999999999999999999999999999887665666667889999999987777777766542
Q ss_pred chhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhh-----cCeeEEEEeccccccCCCCCCC---CCChHHHHH
Q 035774 162 PEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQ-----NQVKLLVIDSMEALVPGVHEQR---APGQHPLSW 233 (357)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~-----~~~~lvvIDsl~~l~~~~~~~~---~~r~~~~~~ 233 (357)
... ...+.+++.+....+.....+.+..+...+.. .++++||||++++++.....+. ..|...+.+
T Consensus 190 ----~~~--~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~ 263 (349)
T 1pzn_A 190 ----GLD--PDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAK 263 (349)
T ss_dssp ----TCC--HHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHH
T ss_pred ----CCC--HHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHH
Confidence 111 12556788887766666666667777777766 6899999999999986533221 113345788
Q ss_pred HHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC-CeE
Q 035774 234 HISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS-GQR 312 (357)
Q Consensus 234 i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~-~~R 312 (357)
+++.|+++++++|++||+++|....... ++ .....|++|..|+|.+++|+++++.. ..|
T Consensus 264 ~l~~L~~la~~~~~tvii~~h~~~~~~~---~~-----------------~~~~~~~~G~~l~~~~~~rL~l~~~~~~~R 323 (349)
T 1pzn_A 264 HLADLHRLANLYDIAVFVTNQVQARPDA---FF-----------------GDPTRPIGGHILAHSATLRVYLRKGKGGKR 323 (349)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECC-----------------------------------CCCCCTTCSEEEEEEECTTSEE
T ss_pred HHHHHHHHHHHcCcEEEEEccccccccc---cc-----------------CCccccCCcceEeecCcEEEEEEEcCCCeE
Confidence 9999999999999999999998764320 10 11346888999999999999999874 589
Q ss_pred EEEEEeCCCCCCceeEEEEcCCCce
Q 035774 313 FMNVEKSPTSPPLAFSFTINPSGIS 337 (357)
Q Consensus 313 ~l~v~K~r~~~~~~~~f~I~~~Gi~ 337 (357)
.+++.|+|+.|.+.+.|+|+++||+
T Consensus 324 i~k~~ks~~~~~~~~~f~It~~Gi~ 348 (349)
T 1pzn_A 324 IARLIDAPHLPEGEAVFSITEKGIE 348 (349)
T ss_dssp EEEESCSSSSCCSEEEEEEETTEEE
T ss_pred EEEEEeCCCCCCeEEEEEEcCCCCC
Confidence 9999999999988899999999986
No 6
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=100.00 E-value=1.3e-32 Score=242.99 Aligned_cols=236 Identities=28% Similarity=0.382 Sum_probs=170.2
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
..+++||++.||++|+||+++|++++|+|+||+|||+|+.+++.+++.+...|+.+.+++||++++.++..++.++....
T Consensus 3 ~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (243)
T 1n0w_A 3 IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERY 82 (243)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHT
T ss_pred ceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHc
Confidence 46899999999999999999999999999999999999999999877765555567899999999987777666554321
Q ss_pred CchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCC---CCChHHHHHHHHH
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR---APGQHPLSWHISL 237 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~---~~r~~~~~~i~~~ 237 (357)
.. ......+++.+..+.+..+....+..+...+..+++++||||+++.++.....+. ..|+..+..++..
T Consensus 83 -----g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 155 (243)
T 1n0w_A 83 -----GL--SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRM 155 (243)
T ss_dssp -----TC--CHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHH
T ss_pred -----CC--CHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 11 1123456788877777777777777777777778999999999999886533221 1123347889999
Q ss_pred HHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC-CeEEEEE
Q 035774 238 ITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS-GQRFMNV 316 (357)
Q Consensus 238 Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~-~~R~l~v 316 (357)
|++++++++++||+++|..+..... ..|. ....+|++|..|.+.++.++.+++.. ..|.++|
T Consensus 156 l~~~~~~~~~tvi~~~h~~~~~~~~-~~~~----------------~~~~~~~g~~~~~~~~d~vi~l~~~~~~~r~l~v 218 (243)
T 1n0w_A 156 LLRLADEFGVAVVITNQVVAQVDGA-AMFA----------------ADPKKPIGGNIIAHASTTRLYLRKGRGETRICKI 218 (243)
T ss_dssp HHHHHHHHCCEEEEEC------------------------------------------CCTTCEEEEEEECSTTEEEEEE
T ss_pred HHHHHHHcCCEEEEEeeeeecCCCc-cccC----------------CCcccCCccChhhhcCcEEEEEEEcCCCeEEEEE
Confidence 9999999999999999987754310 0000 12356888899999999999999854 5799999
Q ss_pred EeCCCCCCceeEEEEcCCCceecc
Q 035774 317 EKSPTSPPLAFSFTINPSGISLLT 340 (357)
Q Consensus 317 ~K~r~~~~~~~~f~I~~~Gi~~~~ 340 (357)
.|+|+.+...+.|+|+++||+++.
T Consensus 219 ~K~r~~~~~~~~f~I~~~Gi~~~~ 242 (243)
T 1n0w_A 219 YDSPCLPEAEAMFAINADGVGDAK 242 (243)
T ss_dssp CCBTTBSCEEEEEEEETTEEECCC
T ss_pred EECCCCCCCeEEEEEeCCccccCC
Confidence 999999987799999999999865
No 7
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-32 Score=243.77 Aligned_cols=222 Identities=18% Similarity=0.236 Sum_probs=153.7
Q ss_pred CCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 80 ~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
+.++||||++.||++|+||+++|++++|+|+||+|||+||+|++.+++.. .+.+|+|+++|++ ..++.+.+..
T Consensus 8 ~i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-----~~~~v~~~s~E~~--~~~~~~~~~~ 80 (251)
T 2zts_A 8 PVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLEER--ARDLRREMAS 80 (251)
T ss_dssp CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSC--HHHHHHHHHT
T ss_pred CCCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh-----cCCCceeecccCC--HHHHHHHHHH
Confidence 37799999999999999999999999999999999999999999987652 1478999999985 3344332222
Q ss_pred -cCchhhcccchHHHhhcCeEEe---------------CCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCC
Q 035774 160 -SFPEIFHSKGMAQEMAGRILVL---------------QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ 223 (357)
Q Consensus 160 -~~~~~~~~~~~~~~~~~~i~~~---------------~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~ 223 (357)
.+.. ... ...+++.+. ..........++..+...+..++++++|||+++.+....
T Consensus 81 ~~~~~----~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~--- 151 (251)
T 2zts_A 81 FGWDF----EKY--EKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL--- 151 (251)
T ss_dssp TTCCH----HHH--HHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS---
T ss_pred cCCCh----HHH--HhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhc---
Confidence 1110 000 001111111 111122334556667777778899999999999886542
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEE
Q 035774 224 RAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL 303 (357)
Q Consensus 224 ~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl 303 (357)
.+.+.+.+++..|+.+|+++||++++++|+....... +.. ...+.+.+|.++
T Consensus 152 --~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~------------------------~~~--~~~~~~~aD~vi 203 (251)
T 2zts_A 152 --EEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGK------------------------LSR--YGIEEFIARGVI 203 (251)
T ss_dssp --SSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CC------------------------SSS--SSCGGGGCSEEE
T ss_pred --cChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccc------------------------ccc--CCceeEEeeEEE
Confidence 2446678899999999999999999999986543210 000 011567778888
Q ss_pred EEEEeC----CeEEEEEEeCCCCC--CceeEEEEcCCCceeccCCCce
Q 035774 304 VLEAKS----GQRFMNVEKSPTSP--PLAFSFTINPSGISLLTDDGTE 345 (357)
Q Consensus 304 ~l~~~~----~~R~l~v~K~r~~~--~~~~~f~I~~~Gi~~~~~~~~~ 345 (357)
.|++.. ..|.++|.|+|+++ ...++|+|+++||+++|+.++|
T Consensus 204 ~l~~~~~~~~~~R~l~I~K~R~~~~~~~~~~f~It~~Gi~v~p~~~if 251 (251)
T 2zts_A 204 VLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYPSGEIY 251 (251)
T ss_dssp EEEEEECSSSEEEEEEEEEETTCCCCCBEEEEEEETTEEEECC-----
T ss_pred EEEEEecCCeEEEEEEEEEcCCCCCCCEEEEEEEeCCcEEEeCccccC
Confidence 887642 36899999999988 4678999999999999988775
No 8
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.98 E-value=1.9e-30 Score=225.54 Aligned_cols=216 Identities=26% Similarity=0.360 Sum_probs=171.6
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCc
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFP 162 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~ 162 (357)
+++||++.||.+++||+++|++++|+|+||+|||+|+.+++. .. +.+|+|+++++.++..++.++.....
T Consensus 1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-------~~~v~~i~~~~~~~~~~~~~~~~~~~- 70 (220)
T 2cvh_A 1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-------GKKVAYVDTEGGFSPERLVQMAETRG- 70 (220)
T ss_dssp CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-------CSEEEEEESSCCCCHHHHHHHHHTTT-
T ss_pred CcccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-------CCcEEEEECCCCCCHHHHHHHHHhcC-
Confidence 489999999999999999999999999999999999999998 21 47999999998777777776554311
Q ss_pred hhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHH
Q 035774 163 EIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLA 242 (357)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la 242 (357)
.. .+...+++.+.++.+..+....+..++..+.. ++++||||+++.+...... ...+...+.++++.|++++
T Consensus 71 ----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~-~~~~~~~~~~~~~~L~~l~ 142 (220)
T 2cvh_A 71 ----LN--PEEALSRFILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEEN-RSGLIAELSRQLQVLLWIA 142 (220)
T ss_dssp ----CC--HHHHHHHEEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGG-SSTTHHHHHHHHHHHHHHH
T ss_pred ----CC--hHHHhhcEEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCc-hHHHHHHHHHHHHHHHHHH
Confidence 10 12344567777777666666667766666655 7999999999998754221 1235577888999999999
Q ss_pred HHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe--CCeEEEEEEeCC
Q 035774 243 EFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK--SGQRFMNVEKSP 320 (357)
Q Consensus 243 ~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~--~~~R~l~v~K~r 320 (357)
++++++||+++|....... ....|+++..|.+.+|.++.+++. +..|.+.|.|+|
T Consensus 143 ~~~~~~vi~~~h~~~~~~~-----------------------~~~~p~~~~~~~~~~d~vi~l~~~~~~~~r~l~v~K~r 199 (220)
T 2cvh_A 143 RKHNIPVIVINQVHFDSRT-----------------------EMTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHR 199 (220)
T ss_dssp HHHTCCEEEEECSSSSCTT-----------------------SSCCSCCCHHHHHTSSEEEEEEECSSTTEEEEEEEECS
T ss_pred HHcCCEEEEEeeEEEcCCC-----------------------CccccCCCcceeecCcEEEEEEEecCCCEEEEEEEeCC
Confidence 9999999999998764331 124577888899999999999987 568999999999
Q ss_pred CCCCce-eEEEEcCCCceec
Q 035774 321 TSPPLA-FSFTINPSGISLL 339 (357)
Q Consensus 321 ~~~~~~-~~f~I~~~Gi~~~ 339 (357)
+.+++. +.|+|+++||++.
T Consensus 200 ~~~~~~~~~f~I~~~Gi~~~ 219 (220)
T 2cvh_A 200 FRPEGLMAYFRITERGIEDV 219 (220)
T ss_dssp SSCTTCEEEEEEETTEEEEC
T ss_pred CCCCCceEEEEEeCCceecC
Confidence 998654 8999999999874
No 9
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.97 E-value=1.3e-29 Score=232.15 Aligned_cols=231 Identities=17% Similarity=0.147 Sum_probs=162.1
Q ss_pred CCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCch--HHHHHHH
Q 035774 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS--RRMIEMG 157 (357)
Q Consensus 80 ~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~--~rl~~~~ 157 (357)
...+++||++.||.++ ||+++|++++|+|+||+|||+|+++++.+++.+ +.+|+||++|++... .|+....
T Consensus 47 ~~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~------g~~vl~~slE~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 47 NITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN------DDVVNLHSLEMGKKENIKRLIVTA 119 (315)
T ss_dssp SCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT------TCEEEEEESSSCHHHHHHHHHHHH
T ss_pred CCCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc------CCeEEEEECCCCHHHHHHHHHHHH
Confidence 3679999999999999 789999999999999999999999999998863 379999999986432 2222211
Q ss_pred hccCc--hh------hcccch------HHHh-hcCeEEeCCCCHHHHHHHHHHHHHHhhhcCee--EEEEeccccccCCC
Q 035774 158 ASSFP--EI------FHSKGM------AQEM-AGRILVLQPTSLSEFTESLEKIKVSLLQNQVK--LLVIDSMEALVPGV 220 (357)
Q Consensus 158 ~~~~~--~~------~~~~~~------~~~~-~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~--lvvIDsl~~l~~~~ 220 (357)
. .++ .. .....+ ...+ ..++++.+... .++.++...++....+++++ +||||||+.+....
T Consensus 120 ~-~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~-~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~ 197 (315)
T 3bh0_A 120 G-SINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG-QSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAK 197 (315)
T ss_dssp T-TCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSC-CBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSC
T ss_pred c-CCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCC
Confidence 1 111 00 000000 0111 13556655432 23455556666666677889 99999999987532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhcc
Q 035774 221 HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300 (357)
Q Consensus 221 ~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~ 300 (357)
....|.+.+.++++.|+.+|+++||+|++++|+++..... .+..+..++++.+. .+++.+|
T Consensus 198 --~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r---------------~~~~p~l~dlr~sg--~ie~~aD 258 (315)
T 3bh0_A 198 --ANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQR---------------QDKRPMLSDLRESG--QLEQDAD 258 (315)
T ss_dssp --TTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTS---------------SSCCCCGGGGTTTS--HHHHHCS
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccC---------------CCCCCCHHHhhhhh--hhHhhCC
Confidence 2234668899999999999999999999999998754411 11223334444432 4899999
Q ss_pred EEEEEEEe---------CCeEEEEEEeCCCCCCceeEEEEcCCCcee
Q 035774 301 IRLVLEAK---------SGQRFMNVEKSPTSPPLAFSFTINPSGISL 338 (357)
Q Consensus 301 ~rl~l~~~---------~~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~ 338 (357)
++++|+++ .+.+.+.|.|+|+++.+.+.+.+..+--.+
T Consensus 259 ~vi~L~r~~~~~~~~~~~~~~~l~v~K~R~G~~g~~~l~f~~~~~~f 305 (315)
T 3bh0_A 259 IIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVGTVSLAFIKEYGNF 305 (315)
T ss_dssp EEEEEEEHHHHCTTCTTTTEEEEEEEEETTSCCEEEEEEEEGGGTEE
T ss_pred EEEEEecccccCccccCCCcEEEEEECCcCCCCceEEEEEECCCCeE
Confidence 99999985 247899999999999887766666543333
No 10
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.97 E-value=5.6e-30 Score=235.93 Aligned_cols=216 Identities=24% Similarity=0.283 Sum_probs=168.3
Q ss_pred CCCCCCCchhHHhhhc-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 81 GGHLPTRLKGLDAALC-GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~-GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
..+++||++.||.+|+ ||+++|++++|+||||+||||||++++..++.. +++|+||++|+.+...+..++...
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~------gg~VlyId~E~s~~~~ra~rlgv~ 112 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM------GGVAAFIDAEHALDPVYAKNLGVD 112 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCCCHHHHHHHTCC
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc------CCeEEEEecccccchHHHHHcCCc
Confidence 5689999999999999 999999999999999999999999999988742 478999999998887765554311
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccC-CCCCCCC-CC-----hHHHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP-GVHEQRA-PG-----QHPLS 232 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~-~~~~~~~-~r-----~~~~~ 232 (357)
.+++.+..+.+.+++...+ ...+...++++|||||++.+++ ...++.. .+ ...+.
T Consensus 113 ---------------~~~l~i~~~~~~e~~l~~~---~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la 174 (356)
T 3hr8_A 113 ---------------LKSLLISQPDHGEQALEIV---DELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS 174 (356)
T ss_dssp ---------------GGGCEEECCSSHHHHHHHH---HHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH
T ss_pred ---------------hhhhhhhhccCHHHHHHHH---HHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH
Confidence 2456777777766655444 4445557899999999999986 3333221 12 24567
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe----
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK---- 308 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~---- 308 (357)
.+++.|+.++++++++||++||++...+ .+|. ....|++|..|+|.+++|+.|++.
T Consensus 175 ~~L~~L~~lak~~~~tVI~inqv~~k~g---~~fg-----------------~p~~~~GG~~l~h~~~~rl~l~k~~~~k 234 (356)
T 3hr8_A 175 QALRKIAGSVNKSKAVVIFTNQIRMKIG---VMFG-----------------SPETTTGGLALKFYATMRMEVRRGEPIK 234 (356)
T ss_dssp HHHHHHHHHHHTSSCEEEEEEESSSCSS---SSSC-----------------SCSSCTHHHHHHHHCSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEeeeeeccc---cccC-----------------CcccCCCcchhhhhCcEEEEEEeccccc
Confidence 7888999999999999999999976544 2221 122578899999999999999973
Q ss_pred ------CCeEEEEEEeCCCCCC-ceeEEEE-cCCCceecc
Q 035774 309 ------SGQRFMNVEKSPTSPP-LAFSFTI-NPSGISLLT 340 (357)
Q Consensus 309 ------~~~R~l~v~K~r~~~~-~~~~f~I-~~~Gi~~~~ 340 (357)
+..|.++++|||..|+ ....|+| .++||....
T Consensus 235 ~g~~~~g~~~~vkvvKnr~~~~~~~~~f~i~~~~Gi~~~~ 274 (356)
T 3hr8_A 235 EGKDVIGNVISVKIVKNKVAPPFKTAQTYIIYGKGIDREY 274 (356)
T ss_dssp ETTEEEEEEEEEEEEEESSSCCCCEEEEEEETTTBSCHHH
T ss_pred cCCcccccEEEEEEEeCCCCCCCceEEEEEeeCCCcChhc
Confidence 2368999999999985 5689999 699987664
No 11
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=99.97 E-value=5.5e-30 Score=228.81 Aligned_cols=216 Identities=20% Similarity=0.249 Sum_probs=153.4
Q ss_pred CCCCCCCchhHHhhhc----CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHH
Q 035774 81 GGHLPTRLKGLDAALC----GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEM 156 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~----GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~ 156 (357)
..+++||+++||.+|+ ||+++| +++|+|+||+|||+||+|++++++.. +.++.|+|||+|+++++.|..++
T Consensus 4 ~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~----g~g~~vlyId~E~s~~~~ra~~l 78 (333)
T 3io5_A 4 MDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQ----YPDAVCLFYDSEFGITPAYLRSM 78 (333)
T ss_dssp --CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHH----CTTCEEEEEESSCCCCHHHHHHT
T ss_pred CCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhc----CCCceEEEEeccchhhHHHHHHh
Confidence 5689999999999999 999999 99999999999999999999998742 22589999999999988775554
Q ss_pred HhccCchhhcccchHHHhhcCeEEeCCCCHHHH-HHHHHHHHHHhhhcCeeEEEEeccccccC-CCCCCCC--------C
Q 035774 157 GASSFPEIFHSKGMAQEMAGRILVLQPTSLSEF-TESLEKIKVSLLQNQVKLLVIDSMEALVP-GVHEQRA--------P 226 (357)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~l~~l~~~~~~~~~~lvvIDsl~~l~~-~~~~~~~--------~ 226 (357)
... .+++++..+.+.+++ .++++.+.. +.+..+++|||||++++++ .+.++.. .
T Consensus 79 Gvd---------------~d~llv~~~~~~E~~~l~i~~~l~~-i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~ 142 (333)
T 3io5_A 79 GVD---------------PERVIHTPVQSLEQLRIDMVNQLDA-IERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMT 142 (333)
T ss_dssp TCC---------------GGGEEEEECSBHHHHHHHHHHHHHT-CCTTCCEEEEEECSTTCBCC--------------CT
T ss_pred CCC---------------HHHeEEEcCCCHHHHHHHHHHHHHH-hhccCceEEEEecccccccchhccCccccccccHHH
Confidence 321 246778888887776 555544322 5667899999999999985 3333221 2
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEE
Q 035774 227 GQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLE 306 (357)
Q Consensus 227 r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~ 306 (357)
+.+.+...++.|..+|+++|++||+|||+++ .+ .+|. + ..+.+|..+ +...+|+.+.
T Consensus 143 qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k-~G---~~fg---~---------------p~~~GG~~l-~~ss~Rl~lr 199 (333)
T 3io5_A 143 RAKTMKSLFRIVTPYFSTKNIPCIAINHTYE-TQ---EMFS---K---------------TVMGGGTGP-MYSADTVFII 199 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEEEC-------------------------------------CCG-GGGSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEECCeee-cC---cccC---C---------------CCCCCccee-eeeeEEEEEE
Confidence 3345667777888899999999999999977 43 3332 1 123466778 8899999998
Q ss_pred EeC----------CeEEEEEEeCCCCCC-ceeEEEEc-CCCceecc
Q 035774 307 AKS----------GQRFMNVEKSPTSPP-LAFSFTIN-PSGISLLT 340 (357)
Q Consensus 307 ~~~----------~~R~l~v~K~r~~~~-~~~~f~I~-~~Gi~~~~ 340 (357)
+.+ ....+.++|++..++ ...+|.|. ++||.-..
T Consensus 200 k~~~ik~~~~~~G~~~~v~~~k~kv~k~k~~~~~~i~~~~Gi~~~~ 245 (333)
T 3io5_A 200 GKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYS 245 (333)
T ss_dssp EEC----------CEEEEEEEECSSBCTTCEEEEEBCTTSCBCTTT
T ss_pred eccccccCCccEEeEEEEeEEEEEEccCCcCCcEEEEecCCCChHH
Confidence 642 356788999998874 45678875 78886543
No 12
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.97 E-value=5.6e-30 Score=244.30 Aligned_cols=234 Identities=16% Similarity=0.104 Sum_probs=166.3
Q ss_pred CCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHh-
Q 035774 80 LGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA- 158 (357)
Q Consensus 80 ~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~- 158 (357)
...+++||++.||.++ ||+++|++++|+|+||+|||+|+++++.+++.+ +.+|+||++|++......+-+..
T Consensus 176 ~~~gi~TG~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~------g~~vl~fSlEms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 176 NITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN------DDVVNLHSLEMGKKENIKRLIVTA 248 (444)
T ss_dssp SCCSBCCSCHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT------TCEEEEECSSSCTTHHHHHHHHHH
T ss_pred CCCCcCCCcHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHHH
Confidence 3679999999999999 589999999999999999999999999999863 47999999999755422221111
Q ss_pred ccCc--hh------hcccch------HHHh-hcCeEEeCCCCHHHHHHHHHHHHHHhhhcCee--EEEEeccccccCCCC
Q 035774 159 SSFP--EI------FHSKGM------AQEM-AGRILVLQPTSLSEFTESLEKIKVSLLQNQVK--LLVIDSMEALVPGVH 221 (357)
Q Consensus 159 ~~~~--~~------~~~~~~------~~~~-~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~--lvvIDsl~~l~~~~~ 221 (357)
..++ .. .....+ ...+ ..++++.+.. ...+.++...+++...+++++ +||||||+.+.....
T Consensus 249 ~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~-~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~ 327 (444)
T 3bgw_A 249 GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKA-GQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKA 327 (444)
T ss_dssp SCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCS-SCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCS
T ss_pred cCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCC-CCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCC
Confidence 1111 00 111111 1111 2355555543 234455555666666677899 999999999875421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccE
Q 035774 222 EQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTI 301 (357)
Q Consensus 222 ~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~ 301 (357)
..+|.+.+.++++.|+.+|+++||+||+++|+++.... ..+..+..++++.+.+ +++.+|+
T Consensus 328 --~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~---------------r~~krp~lsdlr~Sg~--ieq~aD~ 388 (444)
T 3bgw_A 328 --NDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQ---------------RQDKRPMLSDLRESGQ--LEQDADI 388 (444)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGG---------------SSCCCCCGGGCCSCSH--HHHHCSE
T ss_pred --CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc---------------cCCCCCchhhhhhhhh--HHhhCCE
Confidence 23467889999999999999999999999999875431 1122334456665543 8999999
Q ss_pred EEEEEEeC---------CeEEEEEEeCCCCCCceeEEEEcCCCceecc
Q 035774 302 RLVLEAKS---------GQRFMNVEKSPTSPPLAFSFTINPSGISLLT 340 (357)
Q Consensus 302 rl~l~~~~---------~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~~~ 340 (357)
+++|+++. +.+.+.|.|+|+++.+.+.+.+..+=-.+.+
T Consensus 389 Vi~L~r~~~~~~~~~~~~~~~l~i~K~R~G~~g~v~l~f~~~~~rf~~ 436 (444)
T 3bgw_A 389 IEFLYRDDYYDKESESKNIVEVIIAKHRDGPVGTVSLAFIKEYGNFVN 436 (444)
T ss_dssp EEECCBGGGTCTTCSSTTEEEEEEEEESSSCCEEEEEEEETTTTEEEC
T ss_pred EEEEeccccccccccCCCeEEEEEEcccCCCCeEEEEEEEcCccEEec
Confidence 99998752 4689999999999988877777665444443
No 13
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.97 E-value=2.7e-29 Score=232.37 Aligned_cols=215 Identities=22% Similarity=0.280 Sum_probs=159.5
Q ss_pred CCCCCCCchhHHhhhc-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 81 GGHLPTRLKGLDAALC-GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~-GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
..+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+++.. +.+|+||++|+++++.+......
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~------g~~vlyid~E~s~~~~~a~~~g~- 113 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGV- 113 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCCCHHHHHHTTC-
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEeCCCCccHHHHHHcCC-
Confidence 6789999999999999 999999999999999999999999999998752 47899999999888664322110
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccC-CCCCCCC------CChHHHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP-GVHEQRA------PGQHPLS 232 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~-~~~~~~~------~r~~~~~ 232 (357)
..+++++.++.+.+++.+.+. ..+...++++|||||++.+.. ...++.. .+.+.+.
T Consensus 114 --------------~~~~l~i~~~~~~e~~~~~~~---~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~ 176 (356)
T 1u94_A 114 --------------DIDNLLCSQPDTGEQALEICD---ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 176 (356)
T ss_dssp --------------CGGGCEEECCSSHHHHHHHHH---HHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHH
T ss_pred --------------ChhheeeeCCCCHHHHHHHHH---HHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHH
Confidence 124566777766666554443 344467899999999999985 2221111 0113578
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC---
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS--- 309 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~--- 309 (357)
++++.|+.++++++|+||++||++...+. +|. ...+|++|..|.+.+++|+.+++..
T Consensus 177 ~~l~~L~~~a~~~~~~VI~~nq~~~~~~~---~fg-----------------~~~~~~gG~~l~~~advrl~l~r~~~~k 236 (356)
T 1u94_A 177 QAMRKLAGNLKQSNTLLIFINQIRMKIGV---MFG-----------------NPETTTGGNALKFYASVRLDIRRIGAVK 236 (356)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEC----------------------------------CTTCSHHHHHCSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCEEEEEeccccccCc---ccC-----------------CCcccCCCcceeeeccEEEEEEEeeeec
Confidence 88999999999999999999999876441 111 1235778889999999999998752
Q ss_pred -------CeEEEEEEeCCCCC-CceeEEEE-cCCCceec
Q 035774 310 -------GQRFMNVEKSPTSP-PLAFSFTI-NPSGISLL 339 (357)
Q Consensus 310 -------~~R~l~v~K~r~~~-~~~~~f~I-~~~Gi~~~ 339 (357)
+.|.++|+|+|..| ...+.|.| .++||...
T Consensus 237 ~g~~~~g~~~~~~i~K~r~~p~~~~~~f~i~~~~Gi~~~ 275 (356)
T 1u94_A 237 EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFY 275 (356)
T ss_dssp SSSSEEEEEEEEEEEEESSBCSCCEEEEEEETTTEECHH
T ss_pred cCccccCcEEEEEECCCccCCCCCcEEEEEEcCCCcCcC
Confidence 46899999999998 57889999 68998765
No 14
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.97 E-value=2.2e-29 Score=233.71 Aligned_cols=215 Identities=23% Similarity=0.307 Sum_probs=159.5
Q ss_pred CCCCCCCchhHHhhhc-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 81 GGHLPTRLKGLDAALC-GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~-GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
..+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+++.. +.+|+||++|+++...+...+..
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~------g~~vlyi~~E~s~~~~~a~~~g~- 124 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA------GGTCAFIDAEHALDPVYARALGV- 124 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCCCHHHHHHTTC-
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC------CCeEEEEECCCChhHHHHHHcCC-
Confidence 6789999999999999 999999999999999999999999999998752 47999999999887654322210
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccC-CCCCCCC------CChHHHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP-GVHEQRA------PGQHPLS 232 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~-~~~~~~~------~r~~~~~ 232 (357)
..+++++.++.+.+++.+. +...+...++++|||||++.++. ...++.. .+.+.+.
T Consensus 125 --------------d~~~l~i~~~~~~e~~l~~---l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~ 187 (366)
T 1xp8_A 125 --------------NTDELLVSQPDNGEQALEI---MELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMS 187 (366)
T ss_dssp --------------CGGGCEEECCSSHHHHHHH---HHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHH
T ss_pred --------------CHHHceeecCCcHHHHHHH---HHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHH
Confidence 1245677777766655444 44455567899999999999985 3322111 1224577
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC---
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS--- 309 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~--- 309 (357)
.+++.|+.++++++|+||++||++...+. +|. ...+|++|..|.+.+++|+.+++..
T Consensus 188 ~~lr~L~~~a~~~~~~VI~~nq~~~~~~~---~fg-----------------~p~~~~gg~al~~~a~~rl~L~r~~~~~ 247 (366)
T 1xp8_A 188 QALRKLTAILSKTGTAAIFINQVREKIGV---MYG-----------------NPETTTGGRALKFYASVRLDVRKIGQPT 247 (366)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEEC-----------------------------------CHHHHHHHCSEEEEEEEESCCC
T ss_pred HHHHHHHHHHHHcCCEEEEEEecccccCc---ccC-----------------CccccCCcchhhheeeEEEEEEecchhc
Confidence 88999999999999999999999876541 111 1135778899999999999999864
Q ss_pred --------CeEEEEEEeCCCCCC-ceeEEEEc-CCCceec
Q 035774 310 --------GQRFMNVEKSPTSPP-LAFSFTIN-PSGISLL 339 (357)
Q Consensus 310 --------~~R~l~v~K~r~~~~-~~~~f~I~-~~Gi~~~ 339 (357)
..|.+.|+|+|..|+ ....|.|. ++||...
T Consensus 248 k~~~~~~g~~~~v~v~Knr~~p~~~~~~f~i~~~~Gi~~~ 287 (366)
T 1xp8_A 248 KVGNDAVANTVKIKTVKNKVAAPFKEVELALVYGKGFDQL 287 (366)
T ss_dssp ------CEEEEEEEEEEESSSCCCCEEEEEEETTTEECHH
T ss_pred ccCccccCCEEEEEEEcCCCCCCCceEEEEEEeCCCcccc
Confidence 368999999999995 66899997 8888765
No 15
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.97 E-value=5.5e-30 Score=245.48 Aligned_cols=233 Identities=18% Similarity=0.204 Sum_probs=157.7
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHH--h
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMG--A 158 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~--~ 158 (357)
..+++||++.||.++ ||+++|++++|+|+||+|||+||++++.+++.. .+.+|+||++|++..... .++. .
T Consensus 180 ~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-----~g~~vl~~slE~~~~~l~-~R~~~~~ 252 (444)
T 2q6t_A 180 VAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-----EGVGVGIYSLEMPAAQLT-LRMMCSE 252 (444)
T ss_dssp ---CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-----TCCCEEEEESSSCHHHHH-HHHHHHH
T ss_pred CCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEECCCCHHHHH-HHHHHHH
Confidence 578999999999999 789999999999999999999999999999852 147899999998643211 1111 1
Q ss_pred ccCc--hh----hcccch------HHHh-hcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCC-CCCC
Q 035774 159 SSFP--EI----FHSKGM------AQEM-AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGV-HEQR 224 (357)
Q Consensus 159 ~~~~--~~----~~~~~~------~~~~-~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~-~~~~ 224 (357)
..++ .. .....+ ...+ ..++++.+.. ...+.++...++....++++++|||||++.+.... ....
T Consensus 253 ~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~-~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~ 331 (444)
T 2q6t_A 253 ARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTP-DLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSG 331 (444)
T ss_dssp TTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCT-TCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC------
T ss_pred cCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCC-CCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCC
Confidence 1111 00 000000 0111 2345555443 22344455566666667899999999999987531 1112
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEE
Q 035774 225 APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLV 304 (357)
Q Consensus 225 ~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~ 304 (357)
.+|.+.+.++++.|+.+|++++|+||+++|+++..... .+..+..++++.+. .|++.+|++++
T Consensus 332 ~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r---------------~~~~p~l~dlr~Sg--~ie~~aD~vi~ 394 (444)
T 2q6t_A 332 ENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEAR---------------PNKRPMLSDLRESG--SIEQDADLVMF 394 (444)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSS---------------SSCSCCGGGGGGGC--TTGGGCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC---------------CCCCCChHHhcchh--HHHHhCCEEEE
Confidence 34678899999999999999999999999998754311 11222233444332 38899999999
Q ss_pred EEEeC---------CeEEEEEEeCCCCCCceeEEEEcCCCcee
Q 035774 305 LEAKS---------GQRFMNVEKSPTSPPLAFSFTINPSGISL 338 (357)
Q Consensus 305 l~~~~---------~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~ 338 (357)
|+++. +.|.+.|.|+|+++.+.+.+.+..+=-.+
T Consensus 395 L~r~~~~~~~~~~~~~~~l~i~K~R~g~~g~~~l~f~~~~~~f 437 (444)
T 2q6t_A 395 IYRDEYYNPHSEKAGIAEIIVGKQRNGPTGTVELQFHASHVRF 437 (444)
T ss_dssp EEEGGGTCSSSSCCSEEEEEEEECSSSCCEEEEEEEETTTTEE
T ss_pred EecccccCCcCCCCCeEEEEEEecCCCCceEEEEEEECCccEE
Confidence 99863 57899999999999887777766544443
No 16
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=99.96 E-value=1.5e-29 Score=231.41 Aligned_cols=238 Identities=16% Similarity=0.155 Sum_probs=166.2
Q ss_pred HHHHHHHh-cccCCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 69 LLMEQRAA-TEHLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 69 ~~~~~~~~-~~~~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
+.++++.+ ......+++||++.||.+++ |+++|++++|+|+||+|||+|+++++.+++.. +.+|+||++|++
T Consensus 13 ~~~~~~~~~~~~~~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~------g~~Vl~fSlEms 85 (338)
T 4a1f_A 13 DLITENQRKGSLEVTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALND------DRGVAVFSLEMS 85 (338)
T ss_dssp HHHHHHHHHTTTCCCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT------TCEEEEEESSSC
T ss_pred HHHHHHHhcCCCCcCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc------CCeEEEEeCCCC
Confidence 34444433 34457899999999999995 79999999999999999999999999998862 589999999996
Q ss_pred CchH--HHHHHHhccCc--hh----hcccc------hHHHh-hcCeEEeCCCCHHHHHHHHHHHHHHhhhc-CeeEEEEe
Q 035774 148 FTSR--RMIEMGASSFP--EI----FHSKG------MAQEM-AGRILVLQPTSLSEFTESLEKIKVSLLQN-QVKLLVID 211 (357)
Q Consensus 148 ~~~~--rl~~~~~~~~~--~~----~~~~~------~~~~~-~~~i~~~~~~~~~~~~~~l~~l~~~~~~~-~~~lvvID 211 (357)
.... |+..... .++ .. ..... ....+ ..++++.+.. ...+.++...++....++ ++++||||
T Consensus 86 ~~ql~~Rlls~~~-~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~-~~si~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 86 AEQLALRALSDLT-SINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKS-YVRIEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp HHHHHHHHHHHHH-CCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCT-TCCHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHHHhh-CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCC-CCcHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4432 2211110 010 00 00000 01111 2346665443 224555556666666677 89999999
Q ss_pred ccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceeccc
Q 035774 212 SMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVL 291 (357)
Q Consensus 212 sl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pal 291 (357)
||+.+..... ..+|.+++.++++.||.+|++++|+||+++|+++.... ..++.|..++++.+.
T Consensus 164 yLqlm~~~~~--~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~---------------r~dkrP~lsDLreSg 226 (338)
T 4a1f_A 164 YLQLMSGSKA--TKERHEQIAEISRELKTLARELEIPIIALVQLNRSLEN---------------RDDKRPILSDIKDSG 226 (338)
T ss_dssp EEECCCTHHH--HHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGG---------------SSSCSCCGGGSEETT
T ss_pred chHHhcCCCC--CCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccc---------------cccCCCChHhcccch
Confidence 9999875421 12466789999999999999999999999999986541 123345556777655
Q ss_pred chhHhhhccEEEEEEEeC-------------------------------------------CeEEEEEEeCCCCCCceeE
Q 035774 292 GFHWAHAVTIRLVLEAKS-------------------------------------------GQRFMNVEKSPTSPPLAFS 328 (357)
Q Consensus 292 g~~w~~~~~~rl~l~~~~-------------------------------------------~~R~l~v~K~r~~~~~~~~ 328 (357)
. +++.+|++++|+++. +...+.|.|+|.+|.+.+.
T Consensus 227 ~--IeqdAD~Vl~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiiiaK~R~G~~g~v~ 304 (338)
T 4a1f_A 227 G--IEQDADIVLFLYRGYIYQMRAEDNKIDKLKKEGKIEEAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNGATGTVY 304 (338)
T ss_dssp E--ECCCCSEEEEEECHHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTSCCEEEE
T ss_pred h--hhhhCcEEEEEecchhcccccccccccccccccccccccchhhhhhhhhcccccccCCCceEEEEEeccCCCCceEE
Confidence 5 888899999998741 1357889999999988877
Q ss_pred EEEcCC
Q 035774 329 FTINPS 334 (357)
Q Consensus 329 f~I~~~ 334 (357)
+.+..+
T Consensus 305 l~f~~~ 310 (338)
T 4a1f_A 305 TRFNAP 310 (338)
T ss_dssp EEEEGG
T ss_pred EEEccc
Confidence 666543
No 17
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.96 E-value=5.3e-28 Score=213.74 Aligned_cols=218 Identities=21% Similarity=0.200 Sum_probs=153.9
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
..+++||++.||++|+||+++|++++|+|+||+|||+|+++++.+.+.+ +++|+|+++|++ ...+.+....
T Consensus 2 ~~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~------~~~v~~~~~e~~--~~~~~~~~~~- 72 (247)
T 2dr3_A 2 TRRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM------GEPGIYVALEEH--PVQVRQNMAQ- 72 (247)
T ss_dssp -CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT------TCCEEEEESSSC--HHHHHHHHHT-
T ss_pred cccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc------CCeEEEEEccCC--HHHHHHHHHH-
Confidence 3579999999999999999999999999999999999999999988742 478999999985 3333332221
Q ss_pred CchhhcccchHHHhhcCeEEeCC----------------CCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCC
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQP----------------TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR 224 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~----------------~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~ 224 (357)
... ...... ...++.+.+. ....++.++...+.+.+...++++||||+++.+...+
T Consensus 73 ~g~--~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~---- 144 (247)
T 2dr3_A 73 FGW--DVKPYE--EKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINK---- 144 (247)
T ss_dssp TTC--CCHHHH--HHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTC----
T ss_pred cCC--CHHHHh--hCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCC----
Confidence 110 000000 0112222220 0122344555666666666789999999999987321
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEE
Q 035774 225 APGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLV 304 (357)
Q Consensus 225 ~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~ 304 (357)
.....+++..|+++++++|++|++++|..+.... ...| .|.+.+|.++.
T Consensus 145 ---~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~------------------------~~~~----~~~~~~D~vi~ 193 (247)
T 2dr3_A 145 ---PAMARSIILQLKRVLAGTGCTSIFVSQVSVGERG------------------------FGGP----GVEHGVDGIIR 193 (247)
T ss_dssp ---GGGHHHHHHHHHHHHHHTTCEEEEEEECC----C------------------------CC-C----CHHHHSSEEEE
T ss_pred ---HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccc------------------------cccc----ccceeEEEEEE
Confidence 1234567788899999999999999998764210 0011 28888899999
Q ss_pred EEEe--C--CeEEEEEEeCCCCCC--ceeEEEEcCCCceeccCCCcee
Q 035774 305 LEAK--S--GQRFMNVEKSPTSPP--LAFSFTINPSGISLLTDDGTEM 346 (357)
Q Consensus 305 l~~~--~--~~R~l~v~K~r~~~~--~~~~f~I~~~Gi~~~~~~~~~~ 346 (357)
+++. . ..|.++|.|+|+++. ..+.|+|+++||.+++...++.
T Consensus 194 L~~~~~~~~~~r~l~v~K~R~~~~~~~~~~f~i~~~Gi~~~~~~~~~~ 241 (247)
T 2dr3_A 194 LDLDEIDGELKRSLIVWKMRGTSHSMRRHPFDITDKGIIVYPDKVLKR 241 (247)
T ss_dssp EEEEEETTEEEEEEEEEEETTSCCCCBCEEEEEETTEEEECTTCCCCC
T ss_pred EEEEccCCeeEEEEEEEECCCCCCCCceEEEEEcCCCEEEecCccccc
Confidence 9875 2 369999999999883 6789999999999999876654
No 18
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.96 E-value=3e-28 Score=225.36 Aligned_cols=215 Identities=26% Similarity=0.310 Sum_probs=160.6
Q ss_pred CCCCCCCchhHHhhhc-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 81 GGHLPTRLKGLDAALC-GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~-GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
..+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+++.+ +++|+||++|+++...+...+..
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~------g~~vlyi~~E~~~~~~~a~~lG~- 111 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA------GGIAAFIDAEHALDPEYAKKLGV- 111 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCCCHHHHHHTTC-
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC------CCeEEEEECCCCcCHHHHHHcCC-
Confidence 5689999999999999 999999999999999999999999999988753 47899999999887654322210
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccC-CCCCCC---C---CChHHHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP-GVHEQR---A---PGQHPLS 232 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~-~~~~~~---~---~r~~~~~ 232 (357)
..+++++.++.+.+++.++ +...+...++++|||||+++++. ...++. . .+...+.
T Consensus 112 --------------~~~~l~i~~~~~~e~~l~~---~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~ 174 (349)
T 2zr9_A 112 --------------DTDSLLVSQPDTGEQALEI---ADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMS 174 (349)
T ss_dssp --------------CGGGCEEECCSSHHHHHHH---HHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHH
T ss_pred --------------CHHHeEEecCCCHHHHHHH---HHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHH
Confidence 1245667777666655443 34445567899999999999984 221111 0 1123567
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe----
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK---- 308 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~---- 308 (357)
.+++.|+.+++++|++||++||++...+. +|. ....|++|..|.+.+++|+.+++.
T Consensus 175 ~~l~~L~~~a~~~~~tVI~inh~~~~~~~---~~~-----------------~p~~~~gg~~l~~~ad~~l~lrr~~~~k 234 (349)
T 2zr9_A 175 QALRKMTGALNNSGTTAIFINELREKIGV---MFG-----------------SPETTTGGKALKFYASVRLDVRRIETLK 234 (349)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECC-------------------------------CCSSHHHHHHHCSEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCEEEEEeccccccCc---ccC-----------------CCcccCCchHhhhccceEEEEEEeeeee
Confidence 88888999999999999999999875441 111 112467788999999999999875
Q ss_pred ------CCeEEEEEEeCCCCC-CceeEEEE-cCCCceec
Q 035774 309 ------SGQRFMNVEKSPTSP-PLAFSFTI-NPSGISLL 339 (357)
Q Consensus 309 ------~~~R~l~v~K~r~~~-~~~~~f~I-~~~Gi~~~ 339 (357)
+..|.++|+|+|..| .+...|.| .++||...
T Consensus 235 ~g~~~~g~~~~~~i~K~~~~p~~~~~~fdi~~~~Gi~~~ 273 (349)
T 2zr9_A 235 DGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGQGISRE 273 (349)
T ss_dssp SSSSCCEEEEEEEEEEESSSCCCCEEEEEEETTSCBCHH
T ss_pred cCccccCCEEEEEeCCCccCCCCceEEEEEEeCCCcCcc
Confidence 246899999999998 57789999 58998765
No 19
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.96 E-value=5.2e-28 Score=211.63 Aligned_cols=218 Identities=31% Similarity=0.465 Sum_probs=163.6
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
.++++||++.||++|+||+++|+++.|.||||+|||||+..++.....+...|+.+++++|++.+..+...++..+.+..
T Consensus 4 ~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~ 83 (231)
T 4a74_A 4 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR 83 (231)
T ss_dssp CCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 56899999999999999999999999999999999999999998877665555567889999999877766666655431
Q ss_pred CchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhh-----hcCeeEEEEeccccccCCCCCCC---CCChHHHH
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLL-----QNQVKLLVIDSMEALVPGVHEQR---APGQHPLS 232 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~-----~~~~~lvvIDsl~~l~~~~~~~~---~~r~~~~~ 232 (357)
... .....+++.+....+..+....+..+...+. ..+++++++|+++..+.....+. ..|...+.
T Consensus 84 -----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~ 156 (231)
T 4a74_A 84 -----GLD--PDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLA 156 (231)
T ss_dssp -----TSC--HHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHH
T ss_pred -----CCC--HHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHH
Confidence 111 1245667877777666555555555555555 67899999999999876543321 11233466
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-CCe
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK-SGQ 311 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~-~~~ 311 (357)
+++..|+++++++|++||+++|..+. .|..|.+.++.++.+++. ...
T Consensus 157 ~~~~~l~~~~~~~g~tvi~vtH~~~~--------------------------------~g~~~~~~~d~~l~l~~~~~~~ 204 (231)
T 4a74_A 157 KHLADLHRLANLYDIAVFVTNQVQAN--------------------------------GGHILAHSATLRVYLRKGKGGK 204 (231)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECC-----------------------------------------CCSEEEEEEECTTSC
T ss_pred HHHHHHHHHHHHCCCeEEEEeecccC--------------------------------cchhhHhhceEEEEEEecCCCe
Confidence 88999999999999999999998663 122388999999999885 458
Q ss_pred EEEEEEeCCCCCCceeEEEEcCCCce
Q 035774 312 RFMNVEKSPTSPPLAFSFTINPSGIS 337 (357)
Q Consensus 312 R~l~v~K~r~~~~~~~~f~I~~~Gi~ 337 (357)
|.+++.|+|+.|.+.+.|+|+++||+
T Consensus 205 r~l~~~K~r~~~~~~~~f~i~~~Gl~ 230 (231)
T 4a74_A 205 RIARLIDAPHLPEGEAVFSITEKGIE 230 (231)
T ss_dssp EEEEEESCC--CCSCEEEEEETTEEE
T ss_pred EEEEEEeCCCCCCceEEEEEeccccc
Confidence 99999999999987789999999986
No 20
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.96 E-value=4.7e-28 Score=232.70 Aligned_cols=236 Identities=14% Similarity=0.137 Sum_probs=159.7
Q ss_pred cCCCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHh
Q 035774 79 HLGGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA 158 (357)
Q Consensus 79 ~~~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~ 158 (357)
....+++||++.||.++ ||+++|++++|+|+||+|||+|+++++.+++.. . +.+|+||++|++..... ..+..
T Consensus 181 ~~~~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~---g~~Vl~~s~E~s~~~l~-~r~~~ 253 (454)
T 2r6a_A 181 GEITGIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--T---NENVAIFSLEMSAQQLV-MRMLC 253 (454)
T ss_dssp CCCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--S---SCCEEEEESSSCHHHHH-HHHHH
T ss_pred CCCCCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--C---CCcEEEEECCCCHHHHH-HHHHH
Confidence 34679999999999999 679999999999999999999999999998752 1 36899999998643211 11110
Q ss_pred --ccCc--hh----hcccch------HHHh-hcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCC
Q 035774 159 --SSFP--EI----FHSKGM------AQEM-AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ 223 (357)
Q Consensus 159 --~~~~--~~----~~~~~~------~~~~-~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~ 223 (357)
..+. .. +....+ ...+ ..++++.+.. ...+.++...++..+..+++++|||||++.+..... .
T Consensus 254 ~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~-~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~-~ 331 (454)
T 2r6a_A 254 AEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTP-SIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGR-S 331 (454)
T ss_dssp HHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCT-TCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC--
T ss_pred HHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCC-CCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCC-C
Confidence 0111 00 000000 0111 2345555432 123334445556666667899999999999875422 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEE
Q 035774 224 RAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRL 303 (357)
Q Consensus 224 ~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl 303 (357)
...+.+.+.++++.|+.+|+++||+||+++|+++..... .+..+..++++.+. .+++.+|.++
T Consensus 332 ~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~---------------~~~~p~lsdlr~Sg--~ie~~aD~vi 394 (454)
T 2r6a_A 332 KENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQR---------------QDKRPMMSDIRESG--SIEQDADIVA 394 (454)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC------------------CCCTHHHHTTC--SHHHHCSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC---------------CCCCCcHHHhhccc--hhHhhCCEEE
Confidence 234778899999999999999999999999998765411 01112223333222 3788999999
Q ss_pred EEEEeC---------CeEEEEEEeCCCCCCceeEEEEcCCCceecc
Q 035774 304 VLEAKS---------GQRFMNVEKSPTSPPLAFSFTINPSGISLLT 340 (357)
Q Consensus 304 ~l~~~~---------~~R~l~v~K~r~~~~~~~~f~I~~~Gi~~~~ 340 (357)
+++++. +.+.+.|.|+|+++.+.+.+.+..+=-.+.+
T Consensus 395 ~l~r~~~~~~~~~~~~~~~l~i~K~R~G~~g~v~l~f~~~~~~f~~ 440 (454)
T 2r6a_A 395 FLYRDDYYNKDSENKNIIEIIIAKQRNGPVGTVQLAFIKEYNKFVN 440 (454)
T ss_dssp EEEETTC-------CCEEEEEEEEESSSCCEEEEEEEETTTTEEEC
T ss_pred EEecccccCcccCCCCeEEEEEecccCCCCeEEEEEEEcCccEEeC
Confidence 998753 5689999999999988777777765545443
No 21
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.95 E-value=3.8e-28 Score=260.72 Aligned_cols=215 Identities=22% Similarity=0.274 Sum_probs=170.6
Q ss_pred CCCCCCCchhHHhhhc-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 81 GGHLPTRLKGLDAALC-GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~-GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
..+++||+++||++|+ ||+++|++++|+|+||+|||+||+++|.+++.+ +.+|+|||+|+++.+.+...+
T Consensus 710 ~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~------g~~VlyiS~Ees~~ql~A~rl--- 780 (2050)
T 3cmu_A 710 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL--- 780 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT------TCCEEEECTTSCCCHHHHHHT---
T ss_pred cceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc------CCcEEEEECCCcHHHHHHHHc---
Confidence 6789999999999998 799999999999999999999999999999863 468999999999887642111
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccC-CCCCCC-CCChH-----HHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP-GVHEQR-APGQH-----PLS 232 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~-~~~~~~-~~r~~-----~~~ 232 (357)
.. ..+++++.+..+..++.+.+. +...+.++++||||||+.++. ....+. .++.+ ++.
T Consensus 781 ------G~------~~~~l~i~~~~~i~~i~~~~r---~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis 845 (2050)
T 3cmu_A 781 ------GV------DIDNLLCSQPDTGEQALEICD---ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 845 (2050)
T ss_dssp ------TC------CTTTCEEECCSSHHHHHHHHH---HHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHH
T ss_pred ------CC------CccceEEecCCCHHHHHHHHH---HHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHH
Confidence 11 125778877777666655554 444457899999999999987 321111 11222 578
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe----
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK---- 308 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~---- 308 (357)
++++.|+++|+++||+||++||+++..+. + |....+|++|..|+|.+++|++|++.
T Consensus 846 ~ilr~Lk~lAke~~v~VI~l~Qv~r~~e~---~-----------------fgdp~~p~GG~~l~h~a~~Rl~Lrr~~~~~ 905 (2050)
T 3cmu_A 846 QAMRKLAGNLKQSNTLLIFINQIRMKIGV---M-----------------FGNPETTTGGNALKFYASVRLDIRRIGAVK 905 (2050)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECCEECTTC---C-----------------SSCCEECSSHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCEEEEeccccccchh---h-----------------cCCCccccCCceeeeeeeEEEEEEeecccc
Confidence 89999999999999999999999987651 1 11245799999999999999999875
Q ss_pred -C------CeEEEEEEeCCCCCCceeEEEE-cCCCceec
Q 035774 309 -S------GQRFMNVEKSPTSPPLAFSFTI-NPSGISLL 339 (357)
Q Consensus 309 -~------~~R~l~v~K~r~~~~~~~~f~I-~~~Gi~~~ 339 (357)
+ ..|.++|.+++..|...+.|.| +++||...
T Consensus 906 ~g~~~~G~~~Rv~~v~~sp~lp~~e~~f~I~~~~Gi~~~ 944 (2050)
T 3cmu_A 906 EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFY 944 (2050)
T ss_dssp ETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEECHH
T ss_pred ccccccCCcceEEEEecCCCCCCceEEEEEEcCCCcccH
Confidence 2 4788899999999988999999 99999854
No 22
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.95 E-value=2.4e-26 Score=223.86 Aligned_cols=231 Identities=11% Similarity=0.090 Sum_probs=158.6
Q ss_pred cCCCCCCC-CchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHH-HH
Q 035774 79 HLGGHLPT-RLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMI-EM 156 (357)
Q Consensus 79 ~~~~~i~T-G~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~-~~ 156 (357)
....+++| |++.||.++ ||+++|++++|+|+||+|||+|++|++.+++.+ .+.+|+||++|++.. ++. ++
T Consensus 219 ~~~~~i~t~G~~~LD~~l-gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~-----~g~~vl~~s~E~s~~--~l~~r~ 290 (503)
T 1q57_A 219 EESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA-----MGKKVGLAMLEESVE--ETAEDL 290 (503)
T ss_dssp SCTTCSCCSSCTTHHHHH-CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT-----SCCCEEEEESSSCHH--HHHHHH
T ss_pred cccCCccccchhhhhHhh-cccCCCeEEEEeecCCCCchHHHHHHHHHHHHh-----cCCcEEEEeccCCHH--HHHHHH
Confidence 34679999 999999999 579999999999999999999999999999852 147899999999643 222 22
Q ss_pred Hh--ccCc--h---h----hcccch---HHHh--hcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCC
Q 035774 157 GA--SSFP--E---I----FHSKGM---AQEM--AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGV 220 (357)
Q Consensus 157 ~~--~~~~--~---~----~~~~~~---~~~~--~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~ 220 (357)
.. ..++ . . .....+ .+.+ ..++++.+.....++.+++..++..+.++++++||||||+.+....
T Consensus 291 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~ 370 (503)
T 1q57_A 291 IGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS 370 (503)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCC
T ss_pred HHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCC
Confidence 11 1111 0 0 000000 1111 2456666653334556666677777777899999999999886432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhcc
Q 035774 221 HEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVT 300 (357)
Q Consensus 221 ~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~ 300 (357)
....+.+.+.++++.|+.+|+++||+||+++|+++ ..... +...+..+..++++.+ ..|++.+|
T Consensus 371 --~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r-~~~~~-----------~~~~~~~p~l~dlr~s--~~ie~~aD 434 (503)
T 1q57_A 371 --GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGK-----------AHEEGRPVSITDLRGS--GALRQLSD 434 (503)
T ss_dssp --SCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC-CSSSS-----------CSTTCCCCCSSSCSSS--SHHHHHCS
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc-hhccC-----------ccccCCCCChhhhccc--hHhhecCc
Confidence 22346688999999999999999999999999987 22100 0001112222344433 34899999
Q ss_pred EEEEEEEeC-----CeEEEEEEeCC-CCCCcee-EEEEcC
Q 035774 301 IRLVLEAKS-----GQRFMNVEKSP-TSPPLAF-SFTINP 333 (357)
Q Consensus 301 ~rl~l~~~~-----~~R~l~v~K~r-~~~~~~~-~f~I~~ 333 (357)
+++.|+++. ..|.++|.|+| .++.+.. .+.+..
T Consensus 435 ~vi~l~r~~~~~~~~~~~l~v~K~R~~G~~g~~~~l~f~~ 474 (503)
T 1q57_A 435 TIIALERNQQGDMPNLVLVRILKCRFTGDTGIAGYMEYNK 474 (503)
T ss_dssp EEEEEEECSSSSCTTEEEEEEEEETTTCCCEEEEEEEECT
T ss_pred EEEEEEeCCcCCCCCeEEEEEEeccCCCCCCceEEEEEEc
Confidence 999999864 47999999999 6887765 545443
No 23
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.94 E-value=5.6e-26 Score=241.95 Aligned_cols=215 Identities=22% Similarity=0.294 Sum_probs=165.9
Q ss_pred CCCCCCCchhHHhhhc-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 81 GGHLPTRLKGLDAALC-GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~-GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
..+++||++.||.+|+ ||+++|++++|+|+||+|||+||+|++.+++.. +++|+|||+|+++.+.+...+..
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~------G~~vlyis~E~s~~~~~a~~lGv- 433 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGV- 433 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEECTTSCCCHHHHHHTTC-
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh------CCCeEEEEccCchHHHHHHHcCC-
Confidence 6799999999999999 999999999999999999999999999999853 57999999999988765322110
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCC-CCC---CCC---CChHHHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPG-VHE---QRA---PGQHPLS 232 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~-~~~---~~~---~r~~~~~ 232 (357)
..+++++.++.+.+++.+. +...+...++++|||||++.++.. ..+ +.. .+.+.+.
T Consensus 434 --------------d~~~L~i~~~~~~e~~l~~---l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s 496 (1706)
T 3cmw_A 434 --------------DIDNLLCSQPDTGEQALEI---CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 496 (1706)
T ss_dssp --------------CGGGCEEECCSSHHHHHHH---HHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHH
T ss_pred --------------CHHHeEEcCCCCHHHHHHH---HHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHH
Confidence 1245677777776665544 444556678999999999999852 111 111 1334677
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC---
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS--- 309 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~--- 309 (357)
.+++.|+.+++++||+||++||+++..+. +|. ...+|++|..|.+.+++|+.+++..
T Consensus 497 ~~Lr~L~~~ak~~~v~VI~inQl~~~vg~---~fg-----------------~~~~p~gg~ale~~ADv~L~L~R~~~~~ 556 (1706)
T 3cmw_A 497 QAMRKLAGNLKQSNTLLIFINQIRMKIGV---MFG-----------------NPETTTGGNALKFYASVRLDIRRIGAVK 556 (1706)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECEEECTTC---CSS-----------------CCEEESSCSHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEeeccccccc---ccC-----------------CCccCCCCcceeeeCCEEEEEEeccccc
Confidence 88999999999999999999999886541 111 2346788889999999999998752
Q ss_pred -------CeEEEEEEeCCCCCC-ceeEEEE-cCCCceec
Q 035774 310 -------GQRFMNVEKSPTSPP-LAFSFTI-NPSGISLL 339 (357)
Q Consensus 310 -------~~R~l~v~K~r~~~~-~~~~f~I-~~~Gi~~~ 339 (357)
..|.++|+|+|.+|+ ....|.| .+.||...
T Consensus 557 ~g~~~~~~~~~l~V~KnR~gp~~~~~~F~I~~~~Gi~~~ 595 (1706)
T 3cmw_A 557 EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFY 595 (1706)
T ss_dssp ETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEECHH
T ss_pred cCccccCcEEEEEEEecCCCCCCCeEEEEEecCCCcccc
Confidence 357899999999985 4578986 57777643
No 24
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.94 E-value=7.3e-26 Score=243.16 Aligned_cols=215 Identities=22% Similarity=0.307 Sum_probs=165.3
Q ss_pred CCCCCCCchhHHhhhc-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 81 GGHLPTRLKGLDAALC-GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~-GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
..+++||++.||++|+ ||+|+|++++|+|+||+|||+||+|++.+++.+ +++|+||++|++++..++..+..
T Consensus 12 ~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~~~------Ge~vlYI~tEes~~~~ra~~lG~- 84 (2050)
T 3cmu_A 12 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGV- 84 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT------TCCEEEECTTSCCCHHHHHHTTC-
T ss_pred CCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhhcc------CCceEEEEccCcchhhHHhhhcc-
Confidence 5789999999999998 999999999999999999999999999999863 58999999999988877543211
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCC-CC------CCCChHHHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVH-EQ------RAPGQHPLS 232 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~-~~------~~~r~~~~~ 232 (357)
.++++.++++...+++.+++..+. ...++++|||||++.+++... +. ...+...+.
T Consensus 85 --------------dl~~i~v~~p~~~e~ll~il~~L~---~~~~~~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~ 147 (2050)
T 3cmu_A 85 --------------DIDNLLCSQPDTGEQALEICDALA---RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 147 (2050)
T ss_dssp --------------CTTTCEEECCSSHHHHHHHHHHHH---HHTCCSEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHH
T ss_pred --------------CcccceecCCCcHHHHHHHHHHHH---hccCCcEEEEcChHHhhhhcccccccccchhhHHHHHHH
Confidence 123455666655555554444332 345799999999999987521 10 111234577
Q ss_pred HHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe----
Q 035774 233 WHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK---- 308 (357)
Q Consensus 233 ~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~---- 308 (357)
.++..|+.+++++|++||++||+....+ .+| .....|++|..|.+++++++.|++.
T Consensus 148 ~~l~~L~~~ak~~gitVVlTNQv~~~~g---~~f-----------------g~~~~~~gG~~l~~iaD~VI~L~r~~~vk 207 (2050)
T 3cmu_A 148 QAMRKLAGNLKQSNTLLIFINQIRMKIG---VMF-----------------GNPETTTGGNALKFYASVRLDIRRIGAVK 207 (2050)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECCEECTT---CCS-----------------SCCEECSSHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCeEEEEEecccccc---ccc-----------------CcccccCCcchhhhhCcEEEEEEeccccc
Confidence 8899999999999999999999976433 111 1224688899999999999999873
Q ss_pred ------CCeEEEEEEeCCCCCC-ceeEEEEc-CCCceec
Q 035774 309 ------SGQRFMNVEKSPTSPP-LAFSFTIN-PSGISLL 339 (357)
Q Consensus 309 ------~~~R~l~v~K~r~~~~-~~~~f~I~-~~Gi~~~ 339 (357)
+..|.++|.|+|..++ ..+.|.|. +.||.+.
T Consensus 208 ~ge~~~G~~Rrl~V~K~R~~~p~~~~~F~I~~g~GI~~~ 246 (2050)
T 3cmu_A 208 EGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFY 246 (2050)
T ss_dssp ETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEECHH
T ss_pred cccccccceEEEEEEeccCCCCCceEEEEEEcCCCeEEe
Confidence 2469999999998875 56899995 7888776
No 25
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.93 E-value=2.6e-25 Score=236.88 Aligned_cols=217 Identities=22% Similarity=0.275 Sum_probs=166.1
Q ss_pred CCCCCCCCchhHHhhhc-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHh
Q 035774 80 LGGHLPTRLKGLDAALC-GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA 158 (357)
Q Consensus 80 ~~~~i~TG~~~LD~~l~-GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~ 158 (357)
...+++||+++||++|+ ||+++|++++|+|+||+|||+|+++++.+++.. +++|+||++|++..+.+.....
T Consensus 709 ~~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~------g~~VlyiS~Ees~~ql~A~~lG- 781 (1706)
T 3cmw_A 709 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLG- 781 (1706)
T ss_dssp SCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEECTTSCCCHHHHHHTT-
T ss_pred cccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHc------CCCeEEEeccchHHHHHHHHcC-
Confidence 36799999999999999 999999999999999999999999999998852 4789999999988765411110
Q ss_pred ccCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccC-CCC---CCCC---CChHHH
Q 035774 159 SSFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP-GVH---EQRA---PGQHPL 231 (357)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~-~~~---~~~~---~r~~~~ 231 (357)
...+++++.++.+..++. ..++..+..+++++|||||++.+.. ... .+.. .+.+.+
T Consensus 782 --------------vd~~~L~i~~~~~leei~---~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~rei 844 (1706)
T 3cmw_A 782 --------------VDIDNLLCSQPDTGEQAL---EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM 844 (1706)
T ss_dssp --------------CCGGGCEEECCSSHHHHH---HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHH
T ss_pred --------------CChhheEEecCCcHHHHH---HHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHH
Confidence 112457777777665544 4445555667899999999999984 211 1110 123457
Q ss_pred HHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC--
Q 035774 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS-- 309 (357)
Q Consensus 232 ~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~-- 309 (357)
..+++.|+.+|+++|++||++||+++..+. ++. + -.+|+++..|.+.+++++++++..
T Consensus 845 s~~Lr~Lk~lAke~gi~VIlinql~r~~g~---~~G-----------d------p~~p~gs~~Leq~ADvvl~L~R~~~~ 904 (1706)
T 3cmw_A 845 SQAMRKLAGNLKQSNTLLIFINQIRMKIGV---MFG-----------N------PETTTGGNALKFYASVRLDIRRIGAV 904 (1706)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECEEECTTC---CSS-----------C------CEEESSCSHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCcccc---ccC-----------C------ccccCCcchhhheeeEEEEEEecccc
Confidence 788899999999999999999999886541 111 0 135777889999999999997642
Q ss_pred --------CeEEEEEEeCCCCCC-ceeEEEE-cCCCceecc
Q 035774 310 --------GQRFMNVEKSPTSPP-LAFSFTI-NPSGISLLT 340 (357)
Q Consensus 310 --------~~R~l~v~K~r~~~~-~~~~f~I-~~~Gi~~~~ 340 (357)
..|.++|+|+|.+|+ ....|+| .+.||....
T Consensus 905 ~~g~~~~g~~r~l~V~KnR~gp~~~~~~F~I~~~~Gi~~~g 945 (1706)
T 3cmw_A 905 KEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYG 945 (1706)
T ss_dssp EETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEECHHH
T ss_pred cccccccCcEEEEEEEecCCCCCCceEEEEEEcCCCccccc
Confidence 378999999999995 5579999 788987654
No 26
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.92 E-value=4.8e-24 Score=186.54 Aligned_cols=209 Identities=21% Similarity=0.256 Sum_probs=143.7
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccC
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSF 161 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~ 161 (357)
.+++||++.||.++.||+++|+++.|.|+||+|||+|+.+++...+.. +++|+|++.+.. ...+...... .
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~------~~~v~~~~~~~~--~~~~~~~~~~-~ 73 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD------GDPCIYVTTEES--RDSIIRQAKQ-F 73 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH------TCCEEEEESSSC--HHHHHHHHHH-T
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC------CCeEEEEEcccC--HHHHHHHHHH-h
Confidence 579999999999999899999999999999999999999999877632 478999999874 3333222211 1
Q ss_pred chhhcccchHHHhhcCeEEe-------------CCCCHHHHHHHHHHHHHHhhhcCee--EEEEeccccccCCCCCCCCC
Q 035774 162 PEIFHSKGMAQEMAGRILVL-------------QPTSLSEFTESLEKIKVSLLQNQVK--LLVIDSMEALVPGVHEQRAP 226 (357)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~-------------~~~~~~~~~~~l~~l~~~~~~~~~~--lvvIDsl~~l~~~~~~~~~~ 226 (357)
...++ .. ...++.+. ...+.. ++...+...+...+++ +||||+++.+...+
T Consensus 74 ~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d------ 139 (235)
T 2w0m_A 74 NWDFE--EY---IEKKLIIIDALMKEKEDQWSLVNLTPE---ELVNKVIEAKQKLGYGKARLVIDSVSALFLDK------ 139 (235)
T ss_dssp TCCCG--GG---BTTTEEEEECCC----CTTBCSSCCHH---HHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC------
T ss_pred cchHH--HH---hhCCEEEEeccccccCceeeecCCCHH---HHHHHHHHHHHhhCCCceEEEEECchHhhcCC------
Confidence 00000 00 00011111 112333 3344444555556889 99999999886431
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEE
Q 035774 227 GQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLE 306 (357)
Q Consensus 227 r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~ 306 (357)
.....++++.|++++++++++||+++|..+.... .. +..|.+.+|.++.++
T Consensus 140 -~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~------------------------~~----~~~~~~~~d~vi~l~ 190 (235)
T 2w0m_A 140 -PAMARKISYYLKRVLNKWNFTIYATSQYAITTSQ------------------------AF----GFGVEHVADGIIRFR 190 (235)
T ss_dssp -GGGHHHHHHHHHHHHHHTTEEEEEEEC---------------------------------------CHHHHCSEEEEEE
T ss_pred -HHHHHHHHHHHHHHHHhCCCeEEEEeccCccccc------------------------cc----ccchheeeeEEEEEE
Confidence 1345678899999999999999999998642110 00 012778889999998
Q ss_pred EeC----CeEEEEEEeCCCCCC--ceeEEEEcCC-CceeccCC
Q 035774 307 AKS----GQRFMNVEKSPTSPP--LAFSFTINPS-GISLLTDD 342 (357)
Q Consensus 307 ~~~----~~R~l~v~K~r~~~~--~~~~f~I~~~-Gi~~~~~~ 342 (357)
+.. ..|.++|.|+|+++. ..+.|+|+++ ||.++++-
T Consensus 191 ~~~~~~~~~r~l~v~K~r~~~~~~~~~~f~i~~~~Gi~~~~~~ 233 (235)
T 2w0m_A 191 RMIRNGELHRYILIEKMRQTDHDKHVWEIDIVNGKGIVLKGRL 233 (235)
T ss_dssp EEEETTEEEEEEEEEEETTCCCCCSCEEEEEETTTEEEEEEEC
T ss_pred EEecCCcEEEEEEEEeccCCcccceeEEEEEcCCCCeEEecCC
Confidence 752 369999999999874 6789999999 99998753
No 27
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.90 E-value=3.4e-22 Score=176.78 Aligned_cols=220 Identities=20% Similarity=0.278 Sum_probs=136.9
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
..+++||++.||++++||+++|+++.|.||+|+|||||+..++...+... +.+++|++.+... ..+.+....
T Consensus 9 ~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~- 80 (251)
T 2ehv_A 9 VRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-----GEPGVFVTLEERA--RDLRREMAS- 80 (251)
T ss_dssp CCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSSCH--HHHHHHHHT-
T ss_pred cceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCeEEEEEccCCH--HHHHHHHHH-
Confidence 56899999999999999999999999999999999999999997665211 4678999988643 222222211
Q ss_pred CchhhcccchHHHhhcCeEEeCC---------------CCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCC
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQP---------------TSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRA 225 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~ 225 (357)
+...++ .. ....++.+.+. ....++......+...+...+++++++|+++++.....
T Consensus 81 ~g~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~---- 152 (251)
T 2ehv_A 81 FGWDFE--KY--EKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE---- 152 (251)
T ss_dssp TTCCHH--HH--HHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS----
T ss_pred cCCChH--HH--hhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC----
Confidence 110000 00 00111222111 11112344555566666677899999999998875311
Q ss_pred CChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhc-cEEEE
Q 035774 226 PGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAV-TIRLV 304 (357)
Q Consensus 226 ~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~-~~rl~ 304 (357)
......+.+..|.+.+++.|++||+++|........ .. +....+.+ |..+.
T Consensus 153 -d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~---~~------------------------~~~i~~~~aD~vi~ 204 (251)
T 2ehv_A 153 -EERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGK---LS------------------------RYGIEEFIARGVIV 204 (251)
T ss_dssp -SGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CC---SS------------------------SSSCGGGGCSEEEE
T ss_pred -CHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCccc---cc------------------------ccChhhEeeeEEEE
Confidence 112223323333333355799999999986543100 00 00124556 88888
Q ss_pred EEEeC----CeEEEEEEeCCCCCC--ceeEEEEcCCCceeccCCCc
Q 035774 305 LEAKS----GQRFMNVEKSPTSPP--LAFSFTINPSGISLLTDDGT 344 (357)
Q Consensus 305 l~~~~----~~R~l~v~K~r~~~~--~~~~f~I~~~Gi~~~~~~~~ 344 (357)
+++.. ..|.++|.|+|+.++ ..+.|+|+++||.++|+.++
T Consensus 205 l~~~~~~~~~~r~l~i~K~r~~~~~~~~~~~~i~~~Gi~v~~~~~~ 250 (251)
T 2ehv_A 205 LDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVYPSGEI 250 (251)
T ss_dssp EEEEECSSSEEEEEEEEEETTCCCCCBEEEEEEETTEEEECC----
T ss_pred EeeeccCCeeEEEEEEEEccCCCcCCceEEEEECCCCeEEcCCccC
Confidence 87642 368999999999874 67899999999999998765
No 28
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.89 E-value=1.9e-21 Score=176.54 Aligned_cols=248 Identities=10% Similarity=0.093 Sum_probs=147.9
Q ss_pred HHHHHHHhcccCCCCCCC-CchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 69 LLMEQRAATEHLGGHLPT-RLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 69 ~~~~~~~~~~~~~~~i~T-G~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
+.++++.+. ....+++| |++.||.++ +|+++|+++.|+|+||+|||||+.+++...+.. . +.+|+|++.|++
T Consensus 3 ~~l~~~~~~-~~~~~i~t~g~~~Ld~i~-~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~---G~~v~~~~~e~~ 75 (296)
T 1cr0_A 3 ERIREHLSS-EESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--M---GKKVGLAMLEES 75 (296)
T ss_dssp HHHHHHHHH-CCCCCBCCCSCTTHHHHH-CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--S---CCCEEEEESSSC
T ss_pred hHhhhhhcc-CCcCCcccCCHHHHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--c---CCeEEEEeCcCC
Confidence 344444332 33779999 999999998 679999999999999999999999999887642 1 358999999874
Q ss_pred Cch--HHHHHHHhccCchh---h-----ccc---chHHHhh--cCeEEeCC---CCHHHHHHHHHHHHHHhhhcCeeEEE
Q 035774 148 FTS--RRMIEMGASSFPEI---F-----HSK---GMAQEMA--GRILVLQP---TSLSEFTESLEKIKVSLLQNQVKLLV 209 (357)
Q Consensus 148 ~~~--~rl~~~~~~~~~~~---~-----~~~---~~~~~~~--~~i~~~~~---~~~~~~~~~l~~l~~~~~~~~~~lvv 209 (357)
... .++........... . ... .....++ .++++.+. .+..++ ...+......+++++||
T Consensus 76 ~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l---~~~~~a~~~~~~p~lli 152 (296)
T 1cr0_A 76 VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRL---LAKLAYMRSGLGCDVII 152 (296)
T ss_dssp HHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHH---HHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHH---HHHHHHHHHhcCCCEEE
Confidence 321 11111111100000 0 000 0111222 24555443 344444 34444444457899999
Q ss_pred EeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceec
Q 035774 210 IDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVA 289 (357)
Q Consensus 210 IDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 289 (357)
||+++.+.... ....+...+.++++.|++++++++++||+++|..+..... +...+..+..+.++.
T Consensus 153 lDept~~~~~~--~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~------------~~~~~~~p~l~dl~~ 218 (296)
T 1cr0_A 153 LDHISIVVSAS--GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGK------------AHEEGRPVSITDLRG 218 (296)
T ss_dssp EEEEC-------------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------------------CCC-
T ss_pred EcCccccCCCC--CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccc------------ccccCCCCCHHHhcc
Confidence 99999986431 1122446788899999999999999999999996411000 000111112223322
Q ss_pred ccchhHhhhccEEEEEEEeC-----CeEEEEEEeCCC-CCCce---eEEEEcCCCceeccCC
Q 035774 290 VLGFHWAHAVTIRLVLEAKS-----GQRFMNVEKSPT-SPPLA---FSFTINPSGISLLTDD 342 (357)
Q Consensus 290 alg~~w~~~~~~rl~l~~~~-----~~R~l~v~K~r~-~~~~~---~~f~I~~~Gi~~~~~~ 342 (357)
+ ..+.+.++.++++++.. ..|.+.|.|+|+ ++.+. +.|.+...|+...+..
T Consensus 219 s--~~i~~~aD~vi~L~~~~~~~~~~~~~l~i~K~R~~g~~g~~~~~~f~~~~~~f~~~~~~ 278 (296)
T 1cr0_A 219 S--GALRQLSDTIIALERNQQGDMPNLVLVRILKCRFTGDTGIAGYMEYNKETGWLEPSSYS 278 (296)
T ss_dssp ----CHHHHCSEEEEEEEC-------CEEEEEEEETTTCCCEEEEEEEECTTTCCEEECCC-
T ss_pred c--HHhHhhCcEEEEEecCcccCCCCeEEEEEEccccCCCCCceEEEEEEcCccEEecCCCC
Confidence 1 24788899999998753 468999999995 87654 4666778888776544
No 29
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.82 E-value=5.1e-19 Score=159.19 Aligned_cols=223 Identities=18% Similarity=0.187 Sum_probs=134.4
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCC----CCCeEEEEeCCCCCchH--HHHHH
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGG----LDGGVIYIDVESTFTSR--RMIEM 156 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg----~~~~vl~i~~e~~~~~~--rl~~~ 156 (357)
.++||++.||.+++ |+++|++++|+|+||+|||||+++++..++....+.| .+++|+|++.|+..... ++..+
T Consensus 12 ~i~tg~~~ld~~lg-gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~ 90 (279)
T 1nlf_A 12 AFAAAPPPLDYVLP-NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHAL 90 (279)
T ss_dssp HHHSCCCCCCEEET-TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHH
T ss_pred HhcCCCCChheeEC-CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHH
Confidence 58899999999995 7999999999999999999999999986653110000 13679999999865321 33333
Q ss_pred HhccCchhhcccchHHHhhcCeEEeCCC-------CHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChH
Q 035774 157 GASSFPEIFHSKGMAQEMAGRILVLQPT-------SLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQH 229 (357)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~ 229 (357)
... +.. .......+++.+.+.. +..+ +..+...+ .++++||||+++++...+ .....
T Consensus 91 g~~-~~~-----~~~~~~~~~l~l~~~~~~~~~~ls~g~----~~~i~~l~--~~~~livlDe~~~~~~~d----~~~~~ 154 (279)
T 1nlf_A 91 GAH-LSA-----EERQAVADGLLIQPLIGSLPNIMAPEW----FDGLKRAA--EGRRLMVLDTLRRFHIEE----ENASG 154 (279)
T ss_dssp HTT-SCH-----HHHHHHHHHEEECCCTTSCCCTTSHHH----HHHHHHHH--TTCSEEEEECGGGGCCSC----TTCHH
T ss_pred Hhh-cCh-----hhhhhccCceEEeecCCCCcccCCHHH----HHHHHHhc--CCCCEEEECCHHHhcCCC----cCchH
Confidence 211 110 0111223444443221 2222 22333333 268999999999987542 12345
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEeC
Q 035774 230 PLSWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAKS 309 (357)
Q Consensus 230 ~~~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~~ 309 (357)
.+..+++.|+.++++.|++||+++|..+..... +..+. .+..+ .+.++.+.+.....+++..
T Consensus 155 ~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~~~--------------g~~~~--~~~~~--g~~~l~d~v~~~~~~~~~~ 216 (279)
T 1nlf_A 155 PMAQVIGRMEAIAADTGCSIVFLHHASKGAAMM--------------GAGDQ--QQASR--GSSVLVDNIRWQSYLSSMT 216 (279)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEC--------------------------------------CTGGGCSCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCccccc--------------CCchh--hhhcc--chhhhccchhhhhhccCCC
Confidence 678899999999999999999999987643210 00000 00011 1122344444444455432
Q ss_pred -----------C----eEEEEEEeCCCCCCc-eeEEEEcCCCceecc
Q 035774 310 -----------G----QRFMNVEKSPTSPPL-AFSFTINPSGISLLT 340 (357)
Q Consensus 310 -----------~----~R~l~v~K~r~~~~~-~~~f~I~~~Gi~~~~ 340 (357)
. ...+.|.|+|++|++ ...|.+.+.|+.+.+
T Consensus 217 ~~~~~~~gi~~~~~~~~~~~~v~K~~~~~~~~~~~~~~~~~G~l~~~ 263 (279)
T 1nlf_A 217 SAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADRWFRRHDGGVLKPA 263 (279)
T ss_dssp HHHHHHTTCCTTSGGGEEEEEEEECSSSSCCCCEEEEECGGGCEEEC
T ss_pred HHHHHHhCCChhhcCcEEEeeeccccCCCCCCceEEEEcCCeeEecc
Confidence 1 234779999999864 356889999988773
No 30
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=6.3e-19 Score=172.17 Aligned_cols=215 Identities=19% Similarity=0.167 Sum_probs=142.1
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
..+++||+++||.+|+||+++|+++.|.|+||+|||||+.+++..... . +++++|++++++ ...+......
T Consensus 260 ~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~---G~~vi~~~~ee~--~~~l~~~~~~- 330 (525)
T 1tf7_A 260 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA---N---KERAILFAYEES--RAQLLRNAYS- 330 (525)
T ss_dssp CCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---T---TCCEEEEESSSC--HHHHHHHHHT-
T ss_pred cceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---C---CCCEEEEEEeCC--HHHHHHHHHH-
Confidence 457899999999999999999999999999999999999999987653 2 367999999875 2333332221
Q ss_pred CchhhcccchHHHhhcCeEEeCCC----CHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHH
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQPT----SLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHIS 236 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~ 236 (357)
+. .....+. ..+.+.+.+.. +..+. ...+...+...+++++|||+++.+.... . . .+.++.+.
T Consensus 331 ~g--~~~~~~~--~~g~~~~~~~~p~~LS~g~~---q~~~~a~~l~~~p~llilDp~~~Ld~~~-~----~-~~~~~~i~ 397 (525)
T 1tf7_A 331 WG--MDFEEME--RQNLLKIVCAYPESAGLEDH---LQIIKSEINDFKPARIAIDSLSALARGV-S----N-NAFRQFVI 397 (525)
T ss_dssp TS--CCHHHHH--HTTSEEECCCCGGGSCHHHH---HHHHHHHHHTTCCSEEEEECHHHHTSSS-C----H-HHHHHHHH
T ss_pred cC--CCHHHHH--hCCCEEEEEeccccCCHHHH---HHHHHHHHHhhCCCEEEEcChHHHHhhC-C----h-HHHHHHHH
Confidence 11 0101110 11233333221 33332 2233333445689999999999886541 1 1 22444445
Q ss_pred HHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe----CCeE
Q 035774 237 LITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK----SGQR 312 (357)
Q Consensus 237 ~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~----~~~R 312 (357)
.|.+.+++.|++||+++|.....+. ...+ +..+.+++|.++.++.. ...|
T Consensus 398 ~ll~~l~~~g~tvilvsh~~~~~~~---------------~~~~-----------~~~l~~~~D~vi~L~~ge~~~~~~R 451 (525)
T 1tf7_A 398 GVTGYAKQEEITGLFTNTSDQFMGA---------------HSIT-----------DSHISTITDTIILLQYVEIRGEMSR 451 (525)
T ss_dssp HHHHHHHHTTCEEEEEEECSSSSCC---------------CSSC-----------SSCCTTTCSEEEEEEEEEETTEEEE
T ss_pred HHHHHHHhCCCEEEEEECcccccCc---------------cccc-----------CcccceeeeEEEEEEEEEeCCEEEE
Confidence 5555556789999999998643220 0000 01146778888888754 2379
Q ss_pred EEEEEeCCCCCC--ceeEEEEcCCCceeccCCC
Q 035774 313 FMNVEKSPTSPP--LAFSFTINPSGISLLTDDG 343 (357)
Q Consensus 313 ~l~v~K~r~~~~--~~~~f~I~~~Gi~~~~~~~ 343 (357)
.++|+|+|++++ ....|+|++.||++.++..
T Consensus 452 ~l~v~K~R~~~~~~~~~~f~i~~~Gi~v~~~~~ 484 (525)
T 1tf7_A 452 AINVFKMRGSWHDKAIREFMISDKGPDIKDSFR 484 (525)
T ss_dssp EEEEEEESSSCCCCBCEEEEECSSCEEEEEECT
T ss_pred EEEEEECCCCCCCCCEEEEEEcCCCEEEecccc
Confidence 999999999985 5689999999999887653
No 31
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.81 E-value=1.8e-18 Score=152.12 Aligned_cols=202 Identities=10% Similarity=-0.019 Sum_probs=119.1
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHh-ccC
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA-SSF 161 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~-~~~ 161 (357)
.++||+++||++|+||+++|++++|.|.||+|||+|++||+.+.+.. +++|+||+++++ +..+...+. ..|
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~------Ge~~~~~~~~e~--~~~l~~~~~~~G~ 73 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS------DNLVGMFSISYP--LQLIIRILSRFGV 73 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT------TCEEEEEECSSC--HHHHHHHHHHTTC
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC------CCcEEEEEEeCC--HHHHHHHHHHcCC
Confidence 48999999999999999999999999999999999999999999853 699999999885 333333222 222
Q ss_pred chhhcccchHHHhhcCeEEe-------------------C-CCCHHHHHHHHHHHHHH------hhh-cC-ee-EEEEec
Q 035774 162 PEIFHSKGMAQEMAGRILVL-------------------Q-PTSLSEFTESLEKIKVS------LLQ-NQ-VK-LLVIDS 212 (357)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~~-------------------~-~~~~~~~~~~l~~l~~~------~~~-~~-~~-lvvIDs 212 (357)
. .....+ .+++.++ . ..++.++...+..+... +.. .+ .+ ++|||+
T Consensus 74 d----l~~~~~--~g~l~i~d~~~~~~~~~~~~~~v~~~~~e~d~~~l~~~i~~iv~~~~~~~~i~~~~~~~rvv~vids 147 (260)
T 3bs4_A 74 D----VIKYLE--NHRLAIVDTFGSFHGIKATMPGVWYLEGMLSSETLPIKYAKAVEDHKKVWMDLNLFEGRELYGFAIS 147 (260)
T ss_dssp C----HHHHHH--TTSEEEECHHHHHHTC---CTTEECCCSCCCTTTHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEEET
T ss_pred C----HHHHhh--CCcEEEEEcccccccccccccceecccccCCHHHHHHHHHHHHHhhccccchhhccCCceEEEEEee
Confidence 1 110000 0122222 1 23444443334443333 122 23 45 358888
Q ss_pred cccccCCCCCCCCCChHHHHHHHHHHHH------HHHH-cCCeEEEeccccccCCCCCCcccccccccccccccccCCCc
Q 035774 213 MEALVPGVHEQRAPGQHPLSWHISLITS------LAEF-SRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYS 285 (357)
Q Consensus 213 l~~l~~~~~~~~~~r~~~~~~i~~~Lk~------la~~-~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (357)
+.++.... .......+...+.. +.++ .+++++++.+ .. ..
T Consensus 148 ldsl~~~~------~~~~~~~~~~~ll~~~~~~~~~~~~~~~ttil~~~-~~-~~------------------------- 194 (260)
T 3bs4_A 148 MSGYLEVF------TPEETLRYLETSAEVRYGHPAYKKYPRGTNFWLWE-GV-KD------------------------- 194 (260)
T ss_dssp GGGGGGTS------CHHHHHHHHHHHHHHHHHCHHHHSSCCCEEEEEEE-SC-SC-------------------------
T ss_pred cchHHHHh------ChhhHHHHHHHHHHhhhhHHHHhccCCcEEEEEEC-CC-cc-------------------------
Confidence 88776441 11222222222322 3333 6777777754 11 11
Q ss_pred ceecccchhHhhhccEEEEEEEe----CCeEEEEEEeCCCCC--CceeEEEEcCC
Q 035774 286 HIVAVLGFHWAHAVTIRLVLEAK----SGQRFMNVEKSPTSP--PLAFSFTINPS 334 (357)
Q Consensus 286 ~~~palg~~w~~~~~~rl~l~~~----~~~R~l~v~K~r~~~--~~~~~f~I~~~ 334 (357)
+.........+|.+|.++.. +..|.+.|.|+|.+. +..++|.|+..
T Consensus 195 ---~~~~~~l~~laD~VI~lr~~e~~g~~rR~L~V~K~Rg~~~~~~~re~~i~~~ 246 (260)
T 3bs4_A 195 ---KRVLLSVYRRADYVLKTRSSLGENGIKRELLVIKTPKPIEELVRFEYEFKGN 246 (260)
T ss_dssp ---HHHHHHHHHHCSEEEEEEEEEETTEEEEEEEEEECCC-----CEEEEEEETT
T ss_pred ---cccccceEEEeeEEEEEEEEecCCceEEEEEEEECCCCCcCCceEEEEEecC
Confidence 00011134567888888653 237999999999988 35666777743
No 32
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.69 E-value=2.2e-15 Score=147.04 Aligned_cols=217 Identities=18% Similarity=0.279 Sum_probs=143.1
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASS 160 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~ 160 (357)
..+++||++.||.+..||+++|+++.|.|+||||||||+.+|+.+.+.+. +.+++||+.++. ...+.+....
T Consensus 18 ~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-----~~g~i~v~g~~~--~~~~~~~~~~- 89 (525)
T 1tf7_A 18 IAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----DEPGVFVTFEET--PQDIIKNARS- 89 (525)
T ss_dssp CCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSSC--HHHHHHHHGG-
T ss_pred cccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCCEEEEEEeCC--HHHHHHHHHH-
Confidence 56799999999999988999999999999999999999999865555432 356999999873 3333332221
Q ss_pred CchhhcccchHHHhhcCeEEeCCC---------CHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHH
Q 035774 161 FPEIFHSKGMAQEMAGRILVLQPT---------SLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPL 231 (357)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~ 231 (357)
+...++. . ....++...... ....+...+.++...+...++++|+||+++++.+.. .......
T Consensus 90 ~g~~~q~--~--~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~----~lD~~~~ 161 (525)
T 1tf7_A 90 FGWDLAK--L--VDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY----DASSVVR 161 (525)
T ss_dssp GTCCHHH--H--HHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT----CCHHHHH
T ss_pred cCCChHH--h--hccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc----CCHHHHH
Confidence 1111111 0 011223332211 223455666777777777889999999999886541 1122333
Q ss_pred HHHHHHHHHHHHHcCCeEEEeccccccCCCCCCcccccccccccccccccCCCcceecccchhHhhhccEEEEEEE----
Q 035774 232 SWHISLITSLAEFSRIPIVVTNQVRPQSHDESCLYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEA---- 307 (357)
Q Consensus 232 ~~i~~~Lk~la~~~~~~vv~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~---- 307 (357)
..+...++.+++ .|++||+++|........ .. ..+ .+.++|.++.++.
T Consensus 162 ~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~-----------------~~---~~i-------~~~laD~vi~L~~~~~~ 213 (525)
T 1tf7_A 162 RELFRLVARLKQ-IGATTVMTTERIEEYGPI-----------------AR---YGV-------EEFVSDNVVILRNVLEG 213 (525)
T ss_dssp HHHHHHHHHHHH-HTCEEEEEEECSSSSSCS-----------------ST---TSC-------HHHHCSEEEEEEEECST
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCCCCcccc-----------------cc---ccc-------eeeeeeEEEEEEEEccC
Confidence 455666666655 699999999875432200 00 000 1455788888887
Q ss_pred eCCeEEEEEEeCCCCC--CceeEEEEcCCCceeccC
Q 035774 308 KSGQRFMNVEKSPTSP--PLAFSFTINPSGISLLTD 341 (357)
Q Consensus 308 ~~~~R~l~v~K~r~~~--~~~~~f~I~~~Gi~~~~~ 341 (357)
....|.+.+.|+|..+ ...+.|.|++.|+.+++.
T Consensus 214 G~~~r~l~~~k~r~~~~~~~~~~~~i~~~gi~v~p~ 249 (525)
T 1tf7_A 214 ERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPL 249 (525)
T ss_dssp TCCEEEEEEEEETTSCCCCSEEEEEEETTEEEECCT
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEcCCCEEEEec
Confidence 3457899999999776 356899999999998763
No 33
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.62 E-value=8.5e-16 Score=138.07 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=91.4
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC--CCCCchHHHHHHHhc
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV--ESTFTSRRMIEMGAS 159 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~--e~~~~~~rl~~~~~~ 159 (357)
..++||++.||++| ||+++|.+++|+|+||+|||+||++++.+ . +.+|+||++ ++.++.
T Consensus 104 ~~i~TGi~~LD~lL-GGi~~gsviLI~GpPGsGKTtLAlqlA~~--~-------G~~VlyIs~~~eE~v~~--------- 164 (331)
T 2vhj_A 104 GELVGCSPVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEA--L-------GGKDKYATVRFGEPLSG--------- 164 (331)
T ss_dssp TTCCSBCCEEEEET-TEEEESEEEEEECSCSSSHHHHHHHHHHH--H-------HTTSCCEEEEBSCSSTT---------
T ss_pred hccccCcHHHHHHh-CCCCCCcEEEEEcCCCCCHHHHHHHHHHh--C-------CCCEEEEEecchhhhhh---------
Confidence 34789999999999 89999999999999999999999999986 1 478999998 332100
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCC--CCCChHHHHHHHHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ--RAPGQHPLSWHISL 237 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~--~~~r~~~~~~i~~~ 237 (357)
+ . . +....+..+...+.+.+ +||||+++.+....... .....+.+++++..
T Consensus 165 -----~----------~-------~---~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~ 217 (331)
T 2vhj_A 165 -----Y----------N-------T---DFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSD 217 (331)
T ss_dssp -----C----------B-------C---CHHHHHHHHHHHHHHCS--EEEEECCTTTC-----------CCHHHHHHHHH
T ss_pred -----h----------h-------c---CHHHHHHHHHHHHhhCC--EEEEecccccccccccccccchHHHHHHHHHHH
Confidence 0 0 1 22333444445555545 99999999986542210 01123568889999
Q ss_pred HHHHHHHcCCeEEEeccc
Q 035774 238 ITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 238 Lk~la~~~~~~vv~~~q~ 255 (357)
|..++++.+++++++++.
T Consensus 218 L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 218 IGAMAASRGCVVIASLNP 235 (331)
T ss_dssp HHHHHHHHTCEEEEECCC
T ss_pred HHHHHhhCCCEEEEEeCC
Confidence 999999999999987653
No 34
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=99.07 E-value=6.5e-11 Score=89.75 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=52.4
Q ss_pred cCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcccCCCCCCCCc
Q 035774 9 MRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQRAATEHLGGHLPTRL 88 (357)
Q Consensus 9 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TG~ 88 (357)
+|+.+....+|.++||.|++++...++.+|.++.|+++..+.+++.++.+....+|.+|.++++++.+ ..+|+||+
T Consensus 31 ~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~~~r~~----~~~itTGs 106 (114)
T 1b22_A 31 CGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSE----IIQITTGS 106 (114)
T ss_dssp TTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHSCCC-------------------------
T ss_pred cCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHHHHHHhcC----CCeeccCc
Confidence 36999999999999999999999999999999999999999999999998888899999999998755 66899999
Q ss_pred hhHHhhhc
Q 035774 89 KGLDAALC 96 (357)
Q Consensus 89 ~~LD~~l~ 96 (357)
+.||.+|+
T Consensus 107 ~~lD~lLg 114 (114)
T 1b22_A 107 KELDKLLQ 114 (114)
T ss_dssp --------
T ss_pred HHHHhhhC
Confidence 99999985
No 35
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.80 E-value=3.4e-08 Score=84.84 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=72.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeE
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL 179 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (357)
.+|.+++++|++|+||||++++++.++.. .+.+|+++..+.+.. -..++... . .. ....+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~------~g~kVli~~~~~d~r--~~~~i~sr-l----G~------~~~~~~ 70 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY------ADVKYLVFKPKIDTR--SIRNIQSR-T----GT------SLPSVE 70 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEEECCCGG--GCSSCCCC-C----CC------SSCCEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh------cCCEEEEEEeccCch--HHHHHHHh-c----CC------Cccccc
Confidence 56899999999999999999999998874 257899997654211 00011110 0 00 001111
Q ss_pred EeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 180 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
+ .+. .+++..+...+...++++|+||+++.+.. +++..|..++.. +++||++.+...
T Consensus 71 ~---~~~---~~i~~~i~~~~~~~~~dvViIDEaQ~l~~--------------~~ve~l~~L~~~-gi~Vil~Gl~~d 127 (223)
T 2b8t_A 71 V---ESA---PEILNYIMSNSFNDETKVIGIDEVQFFDD--------------RICEVANILAEN-GFVVIISGLDKN 127 (223)
T ss_dssp E---SST---HHHHHHHHSTTSCTTCCEEEECSGGGSCT--------------HHHHHHHHHHHT-TCEEEEECCSBC
T ss_pred c---CCH---HHHHHHHHHHhhCCCCCEEEEecCccCcH--------------HHHHHHHHHHhC-CCeEEEEecccc
Confidence 1 122 23334444444445689999999996421 134456666664 999999988654
No 36
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=98.46 E-value=1.4e-07 Score=66.97 Aligned_cols=73 Identities=12% Similarity=0.062 Sum_probs=66.6
Q ss_pred Cccccccc-cCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 035774 1 MANKLISE-MRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEIVCPPFQTALLLMEQ 73 (357)
Q Consensus 1 ~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
|-++..+. .+|++.+.+.|+++++.|++|++..++.+|.++++++.+.+.++.+.+...+++.+.++.+++++
T Consensus 1 m~~l~~~~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~~~~~~~~~~~~ 74 (83)
T 2kz3_A 1 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEE 74 (83)
T ss_dssp CCCCCTTSSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCSSCCCCCCCCCC
T ss_pred CCccccccCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCcCcHHHHHHH
Confidence 56677777 49999999999999999999999999999999999999999999999998888888888887765
No 37
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=98.46 E-value=1.2e-06 Score=79.59 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhh--hcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHc--CCeEEEeccccccCCCCCC
Q 035774 189 FTESLEKIKVSLL--QNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFS--RIPIVVTNQVRPQSHDESC 264 (357)
Q Consensus 189 ~~~~l~~l~~~~~--~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~--~~~vv~~~q~~~~~~~~~~ 264 (357)
+..++.++.+.+. ...+-+|+|=|+.+-.+.. ........+-.|+..||.|.+.+ +|+++++-...- -
T Consensus 200 y~~lL~~I~~~i~~~~~~ilRIvI~SLgSP~wy~--~~~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l--~---- 271 (361)
T 4a8j_A 200 VSTILSQIEQTIKRNDKKLIRIVIPSLLHPAMYP--PKMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDI--I---- 271 (361)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEETTTTCTTTSC--GGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTT--S----
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCcccCC--CcccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHH--c----
Confidence 4455666655553 3468889999998876642 22224577888999999999987 456666632211 0
Q ss_pred cccccccccccccccccCCCcceecccchhHhhhccEEEEEEEe-------------C-----CeEEEEEEeCCCC----
Q 035774 265 LYPFQVQKMDRILKDRTRYYSHIVAVLGFHWAHAVTIRLVLEAK-------------S-----GQRFMNVEKSPTS---- 322 (357)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~palg~~w~~~~~~rl~l~~~-------------~-----~~R~l~v~K~r~~---- 322 (357)
. +.+-..|++.+|+++.|+-- . ..=.++|.|-+..
T Consensus 272 --------------------~---~~l~~rle~l~D~vi~L~pF~~~~~~~~~~~yk~~p~~~~~GLl~V~KLP~l~~~g 328 (361)
T 4a8j_A 272 --------------------T---PPLLVLLRNMFDSVINLEPFNQEMTEFLERVYKSQPGKIQHGLVHILKLPVFTDRG 328 (361)
T ss_dssp --------------------C---HHHHHHHHHHCSEEEEEEECCHHHHHHHHHHTTTCGGGCCCEEEEEEECTTHHHHT
T ss_pred --------------------C---hHHHHHHHHhCcEEEEeeecCCchhhhcccccccCcccccceEEEEEecccccccC
Confidence 0 12334589999999999852 1 2557889996531
Q ss_pred ---C-CceeEEEEcCCCcee
Q 035774 323 ---P-PLAFSFTINPSGISL 338 (357)
Q Consensus 323 ---~-~~~~~f~I~~~Gi~~ 338 (357)
+ .....|++...-+.+
T Consensus 329 ~~~~~~~dlaFKl~Rkkf~I 348 (361)
T 4a8j_A 329 EMRVLKSEWAFKNGRKKFEI 348 (361)
T ss_dssp CCCCEEEEEEEEECSSCEEE
T ss_pred CCCCCccceEEEecceeEEE
Confidence 1 134566666554433
No 38
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.42 E-value=9.5e-08 Score=78.94 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=64.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEeC-
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVLQ- 182 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 182 (357)
+++|.|++|||||+||.+++.. +.+++|++++..++.+...++.... . .. ......+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----------~~~~~yiaT~~~~d~e~~~rI~~h~------~----~R-~~~w~tiE~ 59 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----------APQVLYIATSQILDDEMAARIQHHK------D----GR-PAHWRTAEC 59 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----------CSSEEEEECCCC------CHHHHHH------H----TS-CTTEEEECC
T ss_pred CEEEECCCCCcHHHHHHHHHhc----------CCCeEEEecCCCCCHHHHHHHHHHH------h----cC-CCCcEEEEc
Confidence 4789999999999999999843 2579999998766554433333221 0 00 01222222
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCC-----CC--CC----hHHH-HHHHHHHHHHHHHcCCeEE
Q 035774 183 PTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ-----RA--PG----QHPL-SWHISLITSLAEFSRIPIV 250 (357)
Q Consensus 183 ~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~-----~~--~r----~~~~-~~i~~~Lk~la~~~~~~vv 250 (357)
+.+..+. +.. . ..+.++|+||+++.+....... .. .. ...+ .++...+..+.+...-.|+
T Consensus 60 p~~l~~~---l~~----~-~~~~~~VLvDclt~wl~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~vl 131 (180)
T 1c9k_A 60 WRHLDTL---ITA----D-LAPDDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVL 131 (180)
T ss_dssp SSCGGGT---SCT----T-SCTTCEEEEECHHHHHHHHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HhhHHHH---HHh----h-cccCCeEEEcCHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHccCCCEEE
Confidence 2332222 110 0 1123699999999887552210 10 01 1112 2344445556555555666
Q ss_pred Eeccccc
Q 035774 251 VTNQVRP 257 (357)
Q Consensus 251 ~~~q~~~ 257 (357)
++|++..
T Consensus 132 VsNEVG~ 138 (180)
T 1c9k_A 132 VTNEVGM 138 (180)
T ss_dssp ECCCCCS
T ss_pred EEccccC
Confidence 6676644
No 39
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.39 E-value=9.7e-07 Score=76.61 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=34.6
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-.. ......+...|++++++.+.+||+++|-
T Consensus 162 ~~p~llllDEPts~LD---------~~~~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 162 NNPPIILADQPTWALD---------SKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp TCCSEEEEESTTTTSC---------HHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred cCCCEEEEeCCcccCC---------HHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 4799999998776543 2455667888999988889999999885
No 40
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.37 E-value=1.9e-06 Score=71.34 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=32.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|..+.|.||||+|||+|+..++...... . +..++|++..
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~--~---g~~~~~~~~~ 76 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEK--K---GIRGYFFDTK 76 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHH--S---CCCCCEEEHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHH--c---CCeEEEEEHH
Confidence 4568999999999999999999998876521 1 3578887653
No 41
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.34 E-value=2e-06 Score=79.07 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=36.0
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.++++++.|.-++-.. ......++..|++++++.|+|||+++|--
T Consensus 180 ~~P~lLLlDEPTs~LD---------~~~~~~i~~lL~~l~~~~g~Tii~vTHdl 224 (366)
T 3tui_C 180 SNPKVLLCDQATSALD---------PATTRSILELLKDINRRLGLTILLITHEM 224 (366)
T ss_dssp TCCSEEEEESTTTTSC---------HHHHHHHHHHHHHHHHHSCCEEEEEESCH
T ss_pred cCCCEEEEECCCccCC---------HHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4799999998776543 24556788899999999999999999853
No 42
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.32 E-value=1.3e-06 Score=72.76 Aligned_cols=111 Identities=16% Similarity=0.181 Sum_probs=63.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEE
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (357)
+|.+++++|++|+||||++++++.+.... +.+++++....+ . |. ....+ ..........+.+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~------g~~v~~~~~~~d--~-r~---~~~~i------~s~~g~~~~~~~~ 63 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG------KKKVAVFKPKID--S-RY---HSTMI------VSHSGNGVEAHVI 63 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT------TCEEEEEEEC-----------CCCEE------CC----CEECEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEeeccc--c-cc---CcccE------EecCCCceeeEEE
Confidence 47899999999999999999999887632 478888865431 1 10 00000 0000000011111
Q ss_pred eCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 181 ~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+..++. . .+. .+.++|+||.++.+.. .+...|+.++.+ ++.|+++...
T Consensus 64 ---~~~~~~~---~----~~~-~~~dvviIDE~Q~~~~--------------~~~~~l~~l~~~-~~~Vi~~Gl~ 112 (184)
T 2orw_A 64 ---ERPEEMR---K----YIE-EDTRGVFIDEVQFFNP--------------SLFEVVKDLLDR-GIDVFCAGLD 112 (184)
T ss_dssp ---SSGGGGG---G----GCC-TTEEEEEECCGGGSCT--------------THHHHHHHHHHT-TCEEEEEEES
T ss_pred ---CCHHHHH---H----Hhc-CCCCEEEEECcccCCH--------------HHHHHHHHHHHC-CCCEEEEeec
Confidence 1222221 1 111 3589999999997521 144567777776 9999988754
No 43
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.30 E-value=5.1e-05 Score=71.43 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=56.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEE
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILV 180 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~ 180 (357)
++.++.++|++|+||||++..+|...... +.+|++++++. +.+....++... . .. ..+-+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~------G~kVllv~~D~-~R~aa~eqL~~~-----------~-~~-~gvpv 158 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR------GYKVGVVCSDT-WRPGAYHQLRQL-----------L-DR-YHIEV 158 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT------TCCEEEEECCC-SSTHHHHHHHHH-----------H-GG-GTCEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC------CCeEEEEeCCC-cchhHHHHHHHH-----------H-Hh-cCCcE
Confidence 46899999999999999999999887642 58899999864 232222221110 0 00 12222
Q ss_pred eCCCCHHHHHHHHHHHHHHhhhcCeeEEEEecccc
Q 035774 181 LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEA 215 (357)
Q Consensus 181 ~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~ 215 (357)
+...+..+...++..........+.++||||....
T Consensus 159 ~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 159 FGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGR 193 (443)
T ss_dssp ECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCC
T ss_pred EecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 22222222333333333344456789999997753
No 44
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.29 E-value=2.9e-06 Score=75.24 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=34.0
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-++-.. ......++..|++++++.|++||+++|--.
T Consensus 160 ~~P~lLlLDEPts~LD---------~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLD---------PMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp TCCSEEEEECTTTTCC---------HHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred cCCCEEEEECccccCC---------HHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 4799999998775443 244556788888888445999999988643
No 45
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.28 E-value=3.9e-05 Score=68.80 Aligned_cols=54 Identities=26% Similarity=0.184 Sum_probs=41.2
Q ss_pred CchhHHhhhcCCCCC-------CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 87 RLKGLDAALCGGVPF-------GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 87 G~~~LD~~l~GGi~~-------G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
..+.|+..++++... +.++.+.|++|+||||++.+++...+.. +++|++++.+.
T Consensus 76 ~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~------g~~v~l~~~D~ 136 (297)
T 1j8m_F 76 VYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKK------GFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHT------TCCEEEEECCC
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEecCC
Confidence 345555655543222 8899999999999999999999887642 47899999875
No 46
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.23 E-value=3.4e-05 Score=72.61 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=34.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
++.++.++|++|+||||++..++..... . +.+|++++++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~---~---G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK---R---GYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH---T---TCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---c---CCeEEEEecCc
Confidence 4789999999999999999999987763 2 58899999874
No 47
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.21 E-value=1e-05 Score=64.85 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+|+.+.|.|++|+|||+|+..++..... . +.+++|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~---~---g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE---A---GKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT---T---TCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh---c---CCcEEEEcHHH
Confidence 8999999999999999999998876652 1 35688988754
No 48
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.21 E-value=1e-05 Score=71.51 Aligned_cols=43 Identities=9% Similarity=0.124 Sum_probs=33.9
Q ss_pred CeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 204 QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 204 ~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
+++++++|.-++-.. ......+.+.|++++++.+++||+++|-
T Consensus 165 ~p~lLllDEPts~LD---------~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 165 TPRWLFLDEPTSALD---------LYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp CCEEEEECCCCSSCC---------HHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred CCCEEEEeCccccCC---------HHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 799999998765443 2455667888999998888999999885
No 49
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=7.3e-06 Score=76.08 Aligned_cols=113 Identities=16% Similarity=0.240 Sum_probs=66.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
|+++..=++++||||+|||.+|..+|...- .+.+.++...-.+ . |
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~---------~~f~~v~~s~l~s---------k-~---------------- 222 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTD---------CKFIRVSGAELVQ---------K-Y---------------- 222 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHT---------CEEEEEEGGGGSC---------S-S----------------
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhC---------CCceEEEhHHhhc---------c-c----------------
Confidence 577777799999999999999999998763 5566665532110 0 0
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCC----hHHHHHHHHHHHHHHHHcCCeEEEec
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPG----QHPLSWHISLITSLAEFSRIPIVVTN 253 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r----~~~~~~i~~~Lk~la~~~~~~vv~~~ 253 (357)
..+-...+..+-...+...+.+|+||.+-++........... ...+..++..|..+....++.||.++
T Consensus 223 --------vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaAT 294 (405)
T 4b4t_J 223 --------IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMAT 294 (405)
T ss_dssp --------TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred --------cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEecc
Confidence 011112223333334456789999999999986532222111 12344455555544455566555544
No 50
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.20 E-value=3.7e-06 Score=72.39 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=32.6
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-++-.. ......+.+.|++++++ +.+||+++|-
T Consensus 157 ~~p~lllLDEPt~~LD---------~~~~~~~~~~l~~l~~~-g~tvi~vtHd 199 (224)
T 2pcj_A 157 NEPILLFADEPTGNLD---------SANTKRVMDIFLKINEG-GTSIVMVTHE 199 (224)
T ss_dssp TCCSEEEEESTTTTCC---------HHHHHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred cCCCEEEEeCCCCCCC---------HHHHHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 4789999998775543 24455677788888777 9999999885
No 51
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=1.4e-05 Score=75.02 Aligned_cols=113 Identities=15% Similarity=0.238 Sum_probs=67.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
|+++..-++++||||+|||.+|..+|... +.+.+.++...-++. +
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~---------~~~~~~v~~~~l~~~----------~---------------- 246 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST---------KAAFIRVNGSEFVHK----------Y---------------- 246 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH---------TCEEEEEEGGGTCCS----------S----------------
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCCeEEEecchhhcc----------c----------------
Confidence 57887889999999999999999999776 356666665321110 0
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCC--CCC--hHHHHHHHHHHHHHHHHcCCeEEEec
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQR--APG--QHPLSWHISLITSLAEFSRIPIVVTN 253 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~--~~r--~~~~~~i~~~Lk~la~~~~~~vv~~~ 253 (357)
..+-...+..+-.......+.+|+||.+.++........ ..+ ...+..++..+..+....++.||+++
T Consensus 247 --------~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT 318 (428)
T 4b4t_K 247 --------LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT 318 (428)
T ss_dssp --------CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE
T ss_pred --------cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 001111222222333446789999999999876532211 112 23355556666665556666666554
No 52
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=2.3e-05 Score=73.10 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=65.1
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhc
Q 035774 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAG 176 (357)
Q Consensus 97 GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 176 (357)
.|+++..=++++||||+|||.+|..+|...- .+.+.++...-++ . +
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~---------~~fi~v~~s~l~s---------k-~--------------- 256 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTS---------ATFLRIVGSELIQ---------K-Y--------------- 256 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHT---------CEEEEEESGGGCC---------S-S---------------
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhC---------CCEEEEEHHHhhh---------c-c---------------
Confidence 3688878899999999999999999998763 4566665422100 0 0
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCC--C--hHHHHHHHHHHHHHHHHcCCeEEEe
Q 035774 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP--G--QHPLSWHISLITSLAEFSRIPIVVT 252 (357)
Q Consensus 177 ~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~--r--~~~~~~i~~~Lk~la~~~~~~vv~~ 252 (357)
..+-...+..+-.......+.+|+||.+-++.......... + ...+..++..+..+....++.||++
T Consensus 257 ---------vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaA 327 (437)
T 4b4t_I 257 ---------LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMA 327 (437)
T ss_dssp ---------SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEE
T ss_pred ---------CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEe
Confidence 00111222333333345678999999999988653222211 1 1223334444443334445555544
Q ss_pred c
Q 035774 253 N 253 (357)
Q Consensus 253 ~ 253 (357)
+
T Consensus 328 T 328 (437)
T 4b4t_I 328 T 328 (437)
T ss_dssp E
T ss_pred C
Confidence 3
No 53
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.7e-05 Score=74.66 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=52.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
|+++-.=++++||||+|||.+|..+|... +.+.++++...-++ . +
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~---------~~~~~~v~~s~l~s---------k-~---------------- 255 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI---------GANFIFSPASGIVD---------K-Y---------------- 255 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH---------TCEEEEEEGGGTCC---------S-S----------------
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---------CCCEEEEehhhhcc---------c-c----------------
Confidence 68888889999999999999999999876 35666666532111 0 0
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCC
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPG 219 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~ 219 (357)
..+-...+..+-.......+.+|+||.+-++...
T Consensus 256 --------~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~ 289 (437)
T 4b4t_L 256 --------IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGR 289 (437)
T ss_dssp --------SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCC
T ss_pred --------chHHHHHHHHHHHHHHhcCCceeeeecccccccc
Confidence 0011122233333344567999999999998765
No 54
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.09 E-value=9.8e-06 Score=71.38 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=32.6
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-++-... .....+.+.|++++++ +.+||+++|-
T Consensus 176 ~~p~lllLDEPts~LD~---------~~~~~~~~~l~~l~~~-g~tvi~vtHd 218 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDP---------EMVGEVLSVMKQLANE-GMTMVVVTHE 218 (263)
T ss_dssp TCCSEEEEESTTTTSCH---------HHHHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred CCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 47899999987765432 4455677788888776 9999999885
No 55
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.09 E-value=9.2e-06 Score=71.40 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=33.1
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-++-.. ......+.+.|++++++ +.+||+++|-.
T Consensus 170 ~~p~lllLDEPts~LD---------~~~~~~l~~~l~~l~~~-g~tvi~vtHd~ 213 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVA---------PGLAHDIFNHVLELKAK-GITFLIIEHRL 213 (257)
T ss_dssp TCCSEEEEESTTTTCC---------HHHHHHHHHHHHHHHHT-TCEEEEECSCC
T ss_pred cCCCEEEEeCCccCCC---------HHHHHHHHHHHHHHHHC-CCEEEEEecCH
Confidence 4799999998776543 24555677888888766 99999998853
No 56
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.09 E-value=1.3e-05 Score=65.87 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLK 121 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ 121 (357)
+++|+++.|.|+||||||||+..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 67899999999999999999995
No 57
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.07 E-value=6.7e-06 Score=76.02 Aligned_cols=45 Identities=7% Similarity=-0.032 Sum_probs=34.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-++-.. ...-.++...|+++.++.|+++|+++|--
T Consensus 150 ~~P~lLLLDEPts~LD---------~~~~~~l~~~l~~l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 150 AEPSVFLLDEPLSNLD---------AALRVQMRIEISRLHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp HCCSEEEEESTTTTSC---------HHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred cCCCEEEEECCCcCCC---------HHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4699999997665432 24445677888999999999999999854
No 58
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.06 E-value=1.7e-05 Score=69.48 Aligned_cols=144 Identities=14% Similarity=0.153 Sum_probs=73.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCC--CCeEEEEeCCCCCc-hHHHHHHHhccC-c--hhh-----cc
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGL--DGGVIYIDVESTFT-SRRMIEMGASSF-P--EIF-----HS 167 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~--~~~vl~i~~e~~~~-~~rl~~~~~~~~-~--~~~-----~~ 167 (357)
+++|+++.|.||+|+|||||+..++. ..++..|.. ...+.|+.-+..+. ...+.+...... . ..+ ..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~ 105 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLG--IHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD 105 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTT--SSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHH
Confidence 88999999999999999999986663 333232210 12345655433221 111222111100 0 000 00
Q ss_pred cchHHHhhcCeEE-------eCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHH
Q 035774 168 KGMAQEMAGRILV-------LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITS 240 (357)
Q Consensus 168 ~~~~~~~~~~i~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~ 240 (357)
.......++.+-+ ....+..+. +.+.-++..+ .+++++++|.-++-.. ......+.+.|++
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~-qrv~lAraL~--~~p~lllLDEPts~LD---------~~~~~~l~~~l~~ 173 (253)
T 2nq2_C 106 YQVAMQALDYLNLTHLAKREFTSLSGGQR-QLILIARAIA--SECKLILLDEPTSALD---------LANQDIVLSLLID 173 (253)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGGSCHHHH-HHHHHHHHHH--TTCSEEEESSSSTTSC---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHhcCChhhCCHHHH-HHHHHHHHHH--cCCCEEEEeCCcccCC---------HHHHHHHHHHHHH
Confidence 0011111111111 111122222 2222222222 4799999998775443 2445567778888
Q ss_pred HHHHcCCeEEEecccc
Q 035774 241 LAEFSRIPIVVTNQVR 256 (357)
Q Consensus 241 la~~~~~~vv~~~q~~ 256 (357)
++++.+.+||+++|-.
T Consensus 174 l~~~~g~tvi~vtHd~ 189 (253)
T 2nq2_C 174 LAQSQNMTVVFTTHQP 189 (253)
T ss_dssp HHHTSCCEEEEEESCH
T ss_pred HHHhcCCEEEEEecCH
Confidence 8877799999998853
No 59
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.05 E-value=8.2e-06 Score=74.90 Aligned_cols=45 Identities=9% Similarity=0.010 Sum_probs=33.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-.+-.. ...-.++...|+++.++.++|+|+++|--
T Consensus 155 ~~P~lLLLDEPts~LD---------~~~r~~l~~~l~~~~~~~g~tvi~vTHd~ 199 (359)
T 3fvq_A 155 PDPELILLDEPFSALD---------EQLRRQIREDMIAALRANGKSAVFVSHDR 199 (359)
T ss_dssp TCCSEEEEESTTTTSC---------HHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred cCCCEEEEeCCcccCC---------HHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4799999997665432 23344556678888888999999999954
No 60
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.04 E-value=6.7e-05 Score=66.66 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
|+.++.-++|+||||+|||+++..++... +.++++++.
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---------~~~~~~v~~ 84 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATET---------NATFIRVVG 84 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHT---------TCEEEEEEG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---------CCCEEEEeh
Confidence 46677779999999999999999988664 356777765
No 61
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=1.1e-05 Score=76.02 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=31.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
|+++..-++++||||+|||.+|..+|... +.+.+.++.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~---------~~~f~~v~~ 248 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQT---------NATFLKLAA 248 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH---------TCEEEEEEG
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHh---------CCCEEEEeh
Confidence 68888889999999999999999998776 355666655
No 62
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.03 E-value=0.00037 Score=63.27 Aligned_cols=41 Identities=24% Similarity=0.157 Sum_probs=32.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
++|+++.|.|++|+||||++..++..... . ++.|.+.+.+-
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~---~---~g~V~l~g~D~ 167 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN---H---GFSVVIAASDT 167 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH---T---TCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh---c---CCEEEEEeecc
Confidence 68999999999999999999999876542 1 36777776653
No 63
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.99 E-value=2e-05 Score=69.13 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=23.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLS 123 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia 123 (357)
+++|+++.|.||+|+|||||+.-++
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHh
Confidence 8899999999999999999999666
No 64
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.99 E-value=1.1e-05 Score=70.17 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=31.7
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-++-.. ......+.+.|+++++ .+.+||+++|-
T Consensus 156 ~~p~lllLDEPts~LD---------~~~~~~l~~~l~~~~~-~g~tvi~vtHd 198 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLA---------PILVSEVFEVIQKINQ-EGTTILLVEQN 198 (240)
T ss_dssp TCCSEEEEECTTTTCC---------HHHHHHHHHHHHHHHH-TTCCEEEEESC
T ss_pred cCCCEEEEcCCcccCC---------HHHHHHHHHHHHHHHH-CCCEEEEEecC
Confidence 4799999998775443 2445567777888876 58999999875
No 65
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=2.9e-05 Score=73.08 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=51.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
|+++-.-++++||||+|||.||..+|...- .+.+.++...-++ . +
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~---------~~fi~vs~s~L~s---------k-~---------------- 283 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTD---------ATFIRVIGSELVQ---------K-Y---------------- 283 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHT---------CEEEEEEGGGGCC---------C-S----------------
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccC---------CCeEEEEhHHhhc---------c-c----------------
Confidence 688888899999999999999999998763 4566665432100 0 0
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCC
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPG 219 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~ 219 (357)
..+-...+..+-.......+.+|+||.+-++...
T Consensus 284 --------vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~ 317 (467)
T 4b4t_H 284 --------VGEGARMVRELFEMARTKKACIIFFDEIDAVGGA 317 (467)
T ss_dssp --------SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBC
T ss_pred --------CCHHHHHHHHHHHHHHhcCCceEeeccccccccc
Confidence 0011122223333334567899999999998765
No 66
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.97 E-value=1.3e-05 Score=71.25 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=32.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeE--EEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPI--VVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~v--v~~~q~~~ 257 (357)
.+++++++|.-++-.. ......+.+.|++++++ +.+| |+++|-..
T Consensus 178 ~~p~lLlLDEPts~LD---------~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLD---------FIARESLLSILDSLSDS-YPTLAMIYVTHFIE 224 (279)
T ss_dssp TCCSEEEEESTTTTCC---------HHHHHHHHHHHHHHHHH-CTTCEEEEEESCGG
T ss_pred CCCCEEEEeCCccccC---------HHHHHHHHHHHHHHHHC-CCEEEEEEEecCHH
Confidence 4799999998775543 24455677788888877 8888 88888543
No 67
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.97 E-value=2.4e-05 Score=72.23 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=33.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-.+-.. ...-..+...|+++.++.++++|+++|--
T Consensus 158 ~~P~lLLLDEP~s~LD---------~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 158 VEPDVLLMDEPLSNLD---------AKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp TCCSEEEEESTTTTSC---------HHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred cCCCEEEEcCCCccCC---------HHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4689999997665432 24445577788889888899999999864
No 68
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.96 E-value=3.7e-05 Score=70.40 Aligned_cols=45 Identities=9% Similarity=0.176 Sum_probs=34.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-.+-.. ...-..+...|+++.++.++++|+++|-.
T Consensus 144 ~~P~lLLLDEP~s~LD---------~~~~~~l~~~l~~l~~~~g~tii~vTHd~ 188 (348)
T 3d31_A 144 TNPKILLLDEPLSALD---------PRTQENAREMLSVLHKKNKLTVLHITHDQ 188 (348)
T ss_dssp SCCSEEEEESSSTTSC---------HHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCEEEEECccccCC---------HHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 4799999997665432 24445677788899888999999999864
No 69
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.95 E-value=1.8e-05 Score=73.20 Aligned_cols=45 Identities=4% Similarity=0.023 Sum_probs=33.9
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-.+-.. ...-..+...|+++.++.++++|+++|--
T Consensus 156 ~~P~lLLLDEP~s~LD---------~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 200 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLD---------AKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200 (372)
T ss_dssp TCCSEEEEECTTTTSC---------HHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred cCCCEEEECCCCccCC---------HHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 4799999997665432 24445577788888888899999999863
No 70
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.95 E-value=1.7e-05 Score=72.76 Aligned_cols=46 Identities=9% Similarity=0.056 Sum_probs=34.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-.+-.. ...-..+...|+++.++.++++|+++|-..
T Consensus 162 ~~P~lLLLDEP~s~LD---------~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 162 PRPQVLLFDEPFAAID---------TQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207 (355)
T ss_dssp TCCSEEEEESTTCCSS---------HHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred cCCCEEEEeCCcccCC---------HHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 4799999997665432 244455777888998888999999998643
No 71
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.93 E-value=2.1e-05 Score=72.40 Aligned_cols=45 Identities=11% Similarity=-0.000 Sum_probs=34.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-.+-... ..-..+...|+++.++.++++|+++|--
T Consensus 150 ~~P~lLLLDEP~s~LD~---------~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 194 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDA---------LLRLEVRAELKRLQKELGITTVYVTHDQ 194 (362)
T ss_dssp TCCSEEEEESGGGGSCH---------HHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred cCCCEEEEECccccCCH---------HHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 47999999987765432 3445577788888888899999999864
No 72
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.91 E-value=2.2e-05 Score=69.16 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=32.4
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-++-.. ......+...|++++++ +.+||+++|-
T Consensus 170 ~~p~lllLDEPts~LD---------~~~~~~~~~~l~~l~~~-g~tvi~vtHd 212 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALD---------PELVGEVLRIMQQLAEE-GKTMVVVTHE 212 (262)
T ss_dssp TCCSEEEEESTTTTSC---------HHHHHHHHHHHHHHHHT-TCCEEEECSC
T ss_pred cCCCEEEEeCCCccCC---------HHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 4799999998775443 24455677788888776 9999999885
No 73
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.91 E-value=9.5e-05 Score=68.54 Aligned_cols=119 Identities=26% Similarity=0.225 Sum_probs=64.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHH-HHHhccCchhhcccchHHHhhcCeEEeC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMI-EMGASSFPEIFHSKGMAQEMAGRILVLQ 182 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 182 (357)
.+.|+|+||+|||+++..++...... .+..++|+++........+. .+... +... .-..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~l~~~--------------l~~~-~~~~ 105 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK-----TTARFVYINGFIYRNFTAIIGEIARS--------------LNIP-FPRR 105 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS-----CCCEEEEEETTTCCSHHHHHHHHHHH--------------TTCC-CCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh-----cCeeEEEEeCccCCCHHHHHHHHHHH--------------hCcc-CCCC
Confidence 89999999999999999988766421 03578999875544332322 22211 0000 0000
Q ss_pred CCCHHHHHHHHHHHHHHhhh-cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHH--cCCeEEEeccc
Q 035774 183 PTSLSEFTESLEKIKVSLLQ-NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEF--SRIPIVVTNQV 255 (357)
Q Consensus 183 ~~~~~~~~~~l~~l~~~~~~-~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~--~~~~vv~~~q~ 255 (357)
..+..++ +..+...+.. .+..+|+||.+..+ . ...+..+.+.+..+... .++.+|++++.
T Consensus 106 ~~~~~~~---~~~l~~~l~~~~~~~vlilDE~~~l--~--------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 106 GLSRDEF---LALLVEHLRERDLYMFLVLDDAFNL--A--------PDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp CCCHHHH---HHHHHHHHHHTTCCEEEEEETGGGS--C--------HHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred CCCHHHH---HHHHHHHHhhcCCeEEEEEECcccc--c--------hHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 1122233 3333333332 45789999999877 1 12333333444333321 47888887653
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.91 E-value=4.4e-05 Score=68.39 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=48.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
|.++...++|+||||+|||++|..+|... +.+++++++.. +... + ..
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l---------~~~~i~v~~~~---------l~~~-~---------~g----- 78 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKM---------GINPIMMSAGE---------LESG-N---------AG----- 78 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHH---------TCCCEEEEHHH---------HHCC------------------
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh---------CCCEEEEeHHH---------hhhc-c---------Cc-----
Confidence 45666688999999999999999998766 35677776521 1100 0 00
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccC
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVP 218 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~ 218 (357)
.....+...+.......+...+.+|+||.+-.+..
T Consensus 79 ------~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 79 ------EPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred ------hhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 01112233333333334456789999999988765
No 75
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.91 E-value=1.9e-05 Score=72.66 Aligned_cols=46 Identities=17% Similarity=0.060 Sum_probs=34.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+++++++|.-.+-.. ...-..+...|+++.++.++++|+++|--.
T Consensus 150 ~~P~lLLLDEP~s~LD---------~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 150 KQPKVLLFDEPLSNLD---------ANLRMIMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp TCCSEEEEESTTTTSC---------HHHHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred cCCCEEEEECCcccCC---------HHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 4799999997665432 244455777888888888999999998643
No 76
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.90 E-value=6.7e-05 Score=65.65 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
|++...-++|+||||+|||+++..++... +.+.++++...
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~---------~~~~~~~~~~~ 74 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEA---------QVPFLAMAGAE 74 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHH---------TCCEEEEETTT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCCEEEechHH
Confidence 35556668999999999999999998765 25677777643
No 77
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.90 E-value=9.8e-05 Score=70.26 Aligned_cols=41 Identities=24% Similarity=0.138 Sum_probs=32.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+.+|.++.|.|++|+||||++..++..... . ++.|++.+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~---~---~G~V~l~g~D 330 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ---Q---GKSVMLAAGD 330 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHH---T---TCCEEEECCC
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhh---c---CCeEEEecCc
Confidence 678999999999999999999999876542 1 3566666554
No 78
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.87 E-value=7.8e-05 Score=67.72 Aligned_cols=41 Identities=24% Similarity=0.243 Sum_probs=32.4
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 97 GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
|+..+..-++|+||||+|||+++..++.... +.+.++++..
T Consensus 40 ~~~~~~~~iLL~GppGtGKT~la~ala~~~~--------~~~~~~i~~~ 80 (322)
T 1xwi_A 40 GKRTPWRGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSISSS 80 (322)
T ss_dssp TTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--------SCEEEEEECC
T ss_pred CCCCCCceEEEECCCCccHHHHHHHHHHHcC--------CCcEEEEEhH
Confidence 4566777899999999999999999997652 2567777764
No 79
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.87 E-value=0.00024 Score=63.83 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=35.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
..+|.++.|.|++|+||||++..+|...... +++|++++.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~------g~kV~lv~~D~ 142 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE------GKSVVLAAADT 142 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT------TCCEEEEEECT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhc------CCEEEEEcccc
Confidence 4578999999999999999999999877531 47899998764
No 80
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.86 E-value=0.00014 Score=70.57 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=74.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCC---CCeEEEEeCCCCCc-hHHHHHHHhccCchhh-cccchHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGL---DGGVIYIDVESTFT-SRRMIEMGASSFPEIF-HSKGMAQE 173 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~---~~~vl~i~~e~~~~-~~rl~~~~~~~~~~~~-~~~~~~~~ 173 (357)
+++|+++.|.|++|+|||||+..++. ..++..|.. +..+-|+..+.... ...+.+.......... ........
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~ 368 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVG--EITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE 368 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTT--SSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence 57999999999999999999997663 333333311 23344544322110 0111111110000000 00011122
Q ss_pred hhcCeEE-------eCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcC
Q 035774 174 MAGRILV-------LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSR 246 (357)
Q Consensus 174 ~~~~i~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~ 246 (357)
.++.+-+ ....+..+.. .+.-.+.+ -.+++++++|.-++-.. .....++.+.|++++++.+
T Consensus 369 ~l~~~~l~~~~~~~~~~LSGGq~Q-Rv~iAraL--~~~p~lLlLDEPT~gLD---------~~~~~~i~~~l~~l~~~~g 436 (538)
T 3ozx_A 369 VTKRLNLHRLLESNVNDLSGGELQ-KLYIAATL--AKEADLYVLDQPSSYLD---------VEERYIVAKAIKRVTRERK 436 (538)
T ss_dssp TTTTTTGGGCTTSBGGGCCHHHHH-HHHHHHHH--HSCCSEEEEESTTTTCC---------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHhcCChhhCCHHHHH-HHHHHHHH--HcCCCEEEEeCCccCCC---------HHHHHHHHHHHHHHHHhCC
Confidence 2222211 1112223321 12111222 35799999998776543 2455568888999999999
Q ss_pred CeEEEecccc
Q 035774 247 IPIVVTNQVR 256 (357)
Q Consensus 247 ~~vv~~~q~~ 256 (357)
++||+++|--
T Consensus 437 ~tvi~vsHdl 446 (538)
T 3ozx_A 437 AVTFIIDHDL 446 (538)
T ss_dssp CEEEEECSCH
T ss_pred CEEEEEeCCH
Confidence 9999998853
No 81
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.86 E-value=4.2e-05 Score=67.49 Aligned_cols=44 Identities=5% Similarity=0.107 Sum_probs=33.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-++-.. ......+...|++++++ +.+||+++|-.
T Consensus 155 ~~p~lllLDEPts~LD---------~~~~~~l~~~l~~l~~~-g~tii~vtHd~ 198 (266)
T 2yz2_A 155 HEPDILILDEPLVGLD---------REGKTDLLRIVEKWKTL-GKTVILISHDI 198 (266)
T ss_dssp TCCSEEEEESTTTTCC---------HHHHHHHHHHHHHHHHT-TCEEEEECSCC
T ss_pred cCCCEEEEcCccccCC---------HHHHHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 4799999998775543 24455677788888777 99999998853
No 82
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.86 E-value=8.7e-05 Score=64.68 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999999987653
No 83
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.85 E-value=5.4e-05 Score=66.08 Aligned_cols=25 Identities=36% Similarity=0.704 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLS 123 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia 123 (357)
+++|+++.|.||+|+|||||+.-++
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 8899999999999999999999665
No 84
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.85 E-value=9.5e-05 Score=67.11 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 97 GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
++..+..-++|+||||+|||++|..++... +.+.++++.
T Consensus 46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~---------~~~~~~v~~ 84 (322)
T 3eie_A 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---------NSTFFSVSS 84 (322)
T ss_dssp TTCCCCCEEEEECSSSSCHHHHHHHHHHHH---------TCEEEEEEH
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHH---------CCCEEEEch
Confidence 344556679999999999999999998764 356777754
No 85
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.85 E-value=0.0009 Score=64.21 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=32.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
..++.|+|+||+||||++..++...... +.+|++++.+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~------G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK------GWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC------CCeEEEEeccc
Confidence 5589999999999999999999887642 47899998864
No 86
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.84 E-value=7.9e-05 Score=64.65 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=33.5
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|.-++-.. ......+.+.|++++++.+.+||+++|-
T Consensus 143 ~~p~lllLDEPts~LD---------~~~~~~~~~~l~~l~~~~g~tvi~vtHd 186 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVD---------LKTKGVLMEELRFVQREFDVPILHVTHD 186 (240)
T ss_dssp TCCSSBEEESTTSSCC---------HHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred cCCCEEEEeCCcccCC---------HHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4789999998775443 2445567788888888889999999885
No 87
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.84 E-value=9e-05 Score=63.67 Aligned_cols=49 Identities=22% Similarity=0.220 Sum_probs=36.4
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.|..+..++ .+..++|+|+||+|||+++..++...... +..++|++...
T Consensus 42 ~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~------~~~~~~~~~~~ 90 (242)
T 3bos_A 42 ALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANEL------ERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEEEGGG
T ss_pred HHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEEEHHH
Confidence 344444432 57789999999999999999999877532 46788887743
No 88
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.84 E-value=4.4e-05 Score=67.57 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=33.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|..++-... .....+...|++++++.+.+||+++|-.
T Consensus 173 ~~p~lllLDEPts~LD~---------~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 173 RKPRLLILDNATSALDA---------GNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp TCCSEEEEESTTTTCCH---------HHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred cCCCEEEEECCccCCCH---------HHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 47999999987755432 4445677778888776799999998853
No 89
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.83 E-value=1.8e-05 Score=72.69 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=33.6
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-.+-... ..-.++...|+++.++.++++|+++|--
T Consensus 157 ~~P~lLLLDEP~s~LD~---------~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 201 (353)
T 1oxx_K 157 KDPSLLLLDEPFSNLDA---------RMRDSARALVKEVQSRLGVTLLVVSHDP 201 (353)
T ss_dssp TCCSEEEEESTTTTSCG---------GGHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred hCCCEEEEECCcccCCH---------HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 47999999987655432 2334566778888888899999999864
No 90
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.83 E-value=6e-05 Score=63.72 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=33.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.+|.+.+++|+.|+||||.+++.+.++.. .+.+|+++..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~------~g~kVli~k~ 64 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQF------AKQHAIVFKP 64 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEEC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEe
Confidence 56899999999999999999999999874 2578988864
No 91
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.83 E-value=0.00012 Score=71.09 Aligned_cols=143 Identities=18% Similarity=0.146 Sum_probs=76.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCC--CCeEEEEeCCCCCc-hHHHHHHHhccCchhhcccchHHHhh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGL--DGGVIYIDVESTFT-SRRMIEMGASSFPEIFHSKGMAQEMA 175 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~--~~~vl~i~~e~~~~-~~rl~~~~~~~~~~~~~~~~~~~~~~ 175 (357)
+++|+++.|.|++|+|||||+..++. ..++..|.. ...+.|+.-+.... ...+.+.........+.........+
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~G--l~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l 386 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAG--VEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELL 386 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHT--SSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhC--CCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence 46899999999999999999997763 333333321 23466766543211 10111111100000000011122233
Q ss_pred cCeEEe-------CCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCe
Q 035774 176 GRILVL-------QPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248 (357)
Q Consensus 176 ~~i~~~-------~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~ 248 (357)
+.+-+. ...+..+... +.-.+.. -.+++++++|.-+.-.. ......+...|++++++.+.+
T Consensus 387 ~~~~l~~~~~~~~~~LSGGe~qr-v~lAraL--~~~p~lLlLDEPt~~LD---------~~~~~~i~~~l~~l~~~~g~t 454 (538)
T 1yqt_A 387 KPLGIIDLYDREVNELSGGELQR-VAIAATL--LRDADIYLLDEPSAYLD---------VEQRLAVSRAIRHLMEKNEKT 454 (538)
T ss_dssp TTTTCGGGTTSBGGGCCHHHHHH-HHHHHHH--TSCCSEEEEECTTTTCC---------HHHHHHHHHHHHHHHHHHTCE
T ss_pred HHcCChhhhcCChhhCCHHHHHH-HHHHHHH--HhCCCEEEEeCCcccCC---------HHHHHHHHHHHHHHHHhCCCE
Confidence 322221 1122222221 1111222 35799999998775543 245566788889998888999
Q ss_pred EEEeccc
Q 035774 249 IVVTNQV 255 (357)
Q Consensus 249 vv~~~q~ 255 (357)
||+++|-
T Consensus 455 vi~vsHd 461 (538)
T 1yqt_A 455 ALVVEHD 461 (538)
T ss_dssp EEEECSC
T ss_pred EEEEeCC
Confidence 9999885
No 92
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.82 E-value=2.5e-05 Score=72.28 Aligned_cols=43 Identities=19% Similarity=0.041 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
..+..+.|+|+||+|||+++..++...... .+ .+..++|+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~--~~-~~~~~~~i~~~ 85 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK--FL-GKFKHVYINTR 85 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH--TC-SSCEEEEEEHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH--hc-CCceEEEEECC
Confidence 346789999999999999999998765421 10 03678888864
No 93
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.81 E-value=0.00013 Score=60.75 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=33.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
..|.+..|+|+.|+|||+.+++.+.+.... +.+|+|+..+
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~------~~kvl~~kp~ 57 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIA------QYKCLVIKYA 57 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT------TCCEEEEEET
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHc------CCeEEEEccc
Confidence 358999999999999999999999888653 4889999865
No 94
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.80 E-value=0.00012 Score=72.18 Aligned_cols=143 Identities=18% Similarity=0.142 Sum_probs=75.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCC--CCeEEEEeCCCCCc-hHHHHHHHhccCchhhcccchHHHhh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGL--DGGVIYIDVESTFT-SRRMIEMGASSFPEIFHSKGMAQEMA 175 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~--~~~vl~i~~e~~~~-~~rl~~~~~~~~~~~~~~~~~~~~~~ 175 (357)
+++|+++.|.|++|+|||||+..++. ..++..|.. ...+-|+.-+.... ...+.+.........+.........+
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~G--l~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l 456 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAG--VEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELL 456 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHT--SSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhc--CCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence 46899999999999999999997764 333333322 23466665443211 10111111000000000001111222
Q ss_pred cCeEE-------eCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCe
Q 035774 176 GRILV-------LQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIP 248 (357)
Q Consensus 176 ~~i~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~ 248 (357)
+.+-+ +...+..+... +.-.+.+ -.+++++++|.-++-.. ......+.+.|++++++.+.+
T Consensus 457 ~~~~l~~~~~~~~~~LSGGe~QR-v~iAraL--~~~p~lLlLDEPt~~LD---------~~~~~~l~~~l~~l~~~~g~t 524 (607)
T 3bk7_A 457 KPLGIIDLYDRNVEDLSGGELQR-VAIAATL--LRDADIYLLDEPSAYLD---------VEQRLAVSRAIRHLMEKNEKT 524 (607)
T ss_dssp HHHTCTTTTTSBGGGCCHHHHHH-HHHHHHH--TSCCSEEEEECTTTTCC---------HHHHHHHHHHHHHHHHHTTCE
T ss_pred HHcCCchHhcCChhhCCHHHHHH-HHHHHHH--HhCCCEEEEeCCccCCC---------HHHHHHHHHHHHHHHHhCCCE
Confidence 11111 11123333221 1111222 35799999998776543 244556788889998888999
Q ss_pred EEEeccc
Q 035774 249 IVVTNQV 255 (357)
Q Consensus 249 vv~~~q~ 255 (357)
||+++|-
T Consensus 525 vi~vsHd 531 (607)
T 3bk7_A 525 ALVVEHD 531 (607)
T ss_dssp EEEECSC
T ss_pred EEEEeCC
Confidence 9999885
No 95
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.79 E-value=5.6e-05 Score=76.35 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=68.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
|+.+-.-++++||||+|||+|+..+|... +...++++... +... +
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~el---------g~~~~~v~~~~---------l~sk-~---------------- 278 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPE---------IMSK-L---------------- 278 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTT---------TCEEEEEEHHH---------HHSS-C----------------
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHh---------CCeEEEEEhHH---------hhcc-c----------------
Confidence 57777779999999999999999888543 35666665421 1100 0
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCC-ChHHHHHHHHHHHHHHHHcCCeEEEecc
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAP-GQHPLSWHISLITSLAEFSRIPIVVTNQ 254 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~-r~~~~~~i~~~Lk~la~~~~~~vv~~~q 254 (357)
..+-...+..+-.....+.+.+|+||.+-++.......... ....+..++..+..+....++.||.++.
T Consensus 279 --------~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 279 --------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp --------TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred --------chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 01112222333333445678999999999998653222211 2234555666666665666777776544
No 96
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.77 E-value=5.3e-05 Score=68.09 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=64.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGR 177 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (357)
|++++..++|+||||+|||+++..++... +.+.+++++. .+.... + +
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~---------~~~~i~v~~~------~l~~~~-------~----------g- 91 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISIKGP------ELLTMW-------F----------G- 91 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT---------TCEEEEECHH------HHHHHH-------H----------T-
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh---------CCCEEEEEhH------HHHhhh-------c----------C-
Confidence 57888999999999999999999888754 2456666431 111100 0 0
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCC----CCCCChHHHHHHHHHHHHHHHHcCCeEEEec
Q 035774 178 ILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHE----QRAPGQHPLSWHISLITSLAEFSRIPIVVTN 253 (357)
Q Consensus 178 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~----~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~ 253 (357)
.....+..++.. .....+.+|+||.+..+...... ........+..++..|..+....++.||+++
T Consensus 92 ------~~~~~~~~~f~~----a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at 161 (301)
T 3cf0_A 92 ------ESEANVREIFDK----ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161 (301)
T ss_dssp ------TCTTHHHHHHHH----HHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE
T ss_pred ------chHHHHHHHHHH----HHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 001112222222 22346789999999987643110 0111223344555555444444567777666
Q ss_pred ccc
Q 035774 254 QVR 256 (357)
Q Consensus 254 q~~ 256 (357)
+..
T Consensus 162 n~~ 164 (301)
T 3cf0_A 162 NRP 164 (301)
T ss_dssp SCG
T ss_pred CCc
Confidence 543
No 97
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.77 E-value=0.00026 Score=60.28 Aligned_cols=41 Identities=24% Similarity=0.115 Sum_probs=33.8
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 101 FGVV-TELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 101 ~G~l-~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
+|.+ +.+.|+||+|||+++++++...+.. +.+|++++.+..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~------G~~V~v~d~D~q 45 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ------GVRVMAGVVETH 45 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT------TCCEEEEECCCT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC------CCCEEEEEeCCC
Confidence 4666 7789999999999999999988752 478998888763
No 98
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.76 E-value=0.00013 Score=59.96 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
+..++|+|+||+|||+++..++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45679999999999999999988764
No 99
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.75 E-value=0.00018 Score=66.06 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=47.5
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+.+.||+..+|-++. +.+|+-+.|.|++|+|||+|+.+++..+... +.+..|+|+-..+
T Consensus 156 ~~~~tGiraID~~~p--i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~----~~~v~~I~~lIGE 214 (422)
T 3ice_A 156 STEDLTARVLDLASP--IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN----HPDCVLMVLLIDE 214 (422)
T ss_dssp CTTHHHHHHHHHHSC--CBTTCEEEEECCSSSSHHHHHHHHHHHHHHH----CTTSEEEEEEESS
T ss_pred Ccccccceeeeeeee--ecCCcEEEEecCCCCChhHHHHHHHHHHhhc----CCCeeEEEEEecC
Confidence 467899999999987 8899999999999999999999998877542 1245677775543
No 100
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.75 E-value=6.6e-05 Score=62.71 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=33.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.+|.+..++|+.|+||||.+++++.++.. .+.+|+++..
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~------~g~kV~v~k~ 44 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKI------AKQKIQVFKP 44 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEe
Confidence 46889999999999999999999999863 2578888863
No 101
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.75 E-value=0.00022 Score=64.60 Aligned_cols=42 Identities=26% Similarity=0.137 Sum_probs=35.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
..+|.++.|.|++|+||||++..++...+.. +++|++++.+.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~------g~kVllid~D~ 143 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAEL------GYKVLIAAADT 143 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHT------TCCEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 4678999999999999999999999877632 47899999864
No 102
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.75 E-value=0.00015 Score=69.26 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=61.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCe
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRI 178 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i 178 (357)
+++| ++|+||||+|||+++..++... +.+.++++...-.. . + .. .
T Consensus 48 ~p~g--vLL~GppGtGKT~Laraia~~~---------~~~f~~is~~~~~~---------~-~---~g------~----- 92 (476)
T 2ce7_A 48 MPKG--ILLVGPPGTGKTLLARAVAGEA---------NVPFFHISGSDFVE---------L-F---VG------V----- 92 (476)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHH---------TCCEEEEEGGGTTT---------C-C---TT------H-----
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHc---------CCCeeeCCHHHHHH---------H-H---hc------c-----
Confidence 4555 8899999999999999888755 25677776532100 0 0 00 0
Q ss_pred EEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCC----CCCChHHHHHHHHHHHHHHHHcCCeEEEecc
Q 035774 179 LVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ----RAPGQHPLSWHISLITSLAEFSRIPIVVTNQ 254 (357)
Q Consensus 179 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~----~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q 254 (357)
....+..++. ......+.+|+||.+..+....... ...+.+.+..++..+..+....++.||.+++
T Consensus 93 ------~~~~~r~lf~----~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn 162 (476)
T 2ce7_A 93 ------GAARVRDLFA----QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATN 162 (476)
T ss_dssp ------HHHHHHHHHH----HHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEES
T ss_pred ------cHHHHHHHHH----HHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecC
Confidence 0111222222 2223568999999999886542110 1111223444444444333445777777766
Q ss_pred cc
Q 035774 255 VR 256 (357)
Q Consensus 255 ~~ 256 (357)
..
T Consensus 163 ~~ 164 (476)
T 2ce7_A 163 RP 164 (476)
T ss_dssp CG
T ss_pred Ch
Confidence 54
No 103
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.73 E-value=9e-05 Score=63.09 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLS 123 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia 123 (357)
+++|+++.|.||+|+|||||+.-++
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 8899999999999999999998665
No 104
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.73 E-value=5.7e-05 Score=69.89 Aligned_cols=50 Identities=24% Similarity=0.117 Sum_probs=34.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCch
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTS 150 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~ 150 (357)
.+..+.|+||||+|||+++..++..........+.+..++|+++....+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 92 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETP 92 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCH
Confidence 45689999999999999999998766321000012367889987654443
No 105
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00021 Score=70.28 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCC--CCeEEEEeCCCC--CchHHHHHHHhccCchhhcccchHH
Q 035774 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGL--DGGVIYIDVEST--FTSRRMIEMGASSFPEIFHSKGMAQ 172 (357)
Q Consensus 97 GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~--~~~vl~i~~e~~--~~~~rl~~~~~~~~~~~~~~~~~~~ 172 (357)
|-+..|+++.|.|++|+|||||+..++ .+.++..|.. ...+.|+..+.. ++. .+.+.....+...+.......
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~--Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~-tv~e~~~~~~~~~~~~~~~~~ 449 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLA--GALKPDEGQDIPKLNVSMKPQKIAPKFPG-TVRQLFFKKIRGQFLNPQFQT 449 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHH--TSSCCSBCCCCCSCCEEEECSSCCCCCCS-BHHHHHHHHCSSTTTSHHHHH
T ss_pred CccccceEEEEECCCCCcHHHHHHHHh--cCCCCCCCcCccCCcEEEecccccccCCc-cHHHHHHHHhhcccccHHHHH
Confidence 346777999999999999999999776 3443333310 123555543311 110 111111100000000001111
Q ss_pred HhhcCeE-------EeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHc
Q 035774 173 EMAGRIL-------VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFS 245 (357)
Q Consensus 173 ~~~~~i~-------~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~ 245 (357)
..++.+- .....+..+... +. +...+ -.+++++++|.-++-.. ......+++.|++++++.
T Consensus 450 ~~l~~l~l~~~~~~~~~~LSGGqkQR-v~-iAraL-~~~p~lLlLDEPT~gLD---------~~~~~~i~~ll~~l~~~~ 517 (608)
T 3j16_B 450 DVVKPLRIDDIIDQEVQHLSGGELQR-VA-IVLAL-GIPADIYLIDEPSAYLD---------SEQRIICSKVIRRFILHN 517 (608)
T ss_dssp HTHHHHTSTTTSSSBSSSCCHHHHHH-HH-HHHHT-TSCCSEEEECCTTTTCC---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCChhhhcCChhhCCHHHHHH-HH-HHHHH-HhCCCEEEEECCCCCCC---------HHHHHHHHHHHHHHHHhC
Confidence 1111110 111223333221 11 11222 35799999998765443 244556788899998888
Q ss_pred CCeEEEeccc
Q 035774 246 RIPIVVTNQV 255 (357)
Q Consensus 246 ~~~vv~~~q~ 255 (357)
+.+||+++|-
T Consensus 518 g~tviivtHd 527 (608)
T 3j16_B 518 KKTAFIVEHD 527 (608)
T ss_dssp TCEEEEECSC
T ss_pred CCEEEEEeCC
Confidence 9999999885
No 106
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.72 E-value=0.0004 Score=63.88 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=29.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 97 GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
++..+..-++|+||||+|||++|..++... +.+.++++.
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~---------~~~~~~v~~ 117 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---------NSTFFSVSS 117 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHH---------TCEEEEEEH
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCCEEEeeH
Confidence 445566668999999999999999998765 255666654
No 107
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.72 E-value=0.00014 Score=65.45 Aligned_cols=26 Identities=38% Similarity=0.468 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.||+|+|||||+.-++.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHc
Confidence 88999999999999999999986653
No 108
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.67 E-value=0.00036 Score=62.29 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
++.-++|+||||+|||+++..++... +.+.+++++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~ 88 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC---------SATFLNISAA 88 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT---------TCEEEEEEST
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh---------CCCeEEeeHH
Confidence 46679999999999999999888754 2566677653
No 109
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.67 E-value=0.00018 Score=64.67 Aligned_cols=39 Identities=28% Similarity=0.283 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+|+++.|.|++|+||||++..++..... . +++|.+.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~---~---~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN---L---GKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT---T---TCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh---c---CCEEEEEeec
Confidence 6899999999999999999999876642 1 3567766654
No 110
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.67 E-value=0.0019 Score=60.80 Aligned_cols=41 Identities=22% Similarity=0.193 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+..++.++|++|+||||++.++|...+.. . +.+|+.++++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~--~---G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK--H---KKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT--S---CCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh--c---CCeEEEEecCC
Confidence 34688889999999999999999888741 1 48999999975
No 111
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.64 E-value=0.00038 Score=57.16 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
.+..++|+|+||+|||+++..++....
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999988764
No 112
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.63 E-value=0.00016 Score=71.21 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.||+|+|||||+.-++..
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999999977643
No 113
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.59 E-value=0.00016 Score=63.26 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=25.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
++|+||||+|||+++..++... +.+.++++..
T Consensus 48 vll~G~~GtGKT~la~~la~~~---------~~~~~~i~~~ 79 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA---------KVPFFTISGS 79 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---------TCCEEEECSC
T ss_pred EEEECcCCCCHHHHHHHHHHHc---------CCCEEEEeHH
Confidence 8899999999999999888754 2456777653
No 114
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.57 E-value=0.00075 Score=63.33 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=34.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
++.++.|+|++|+||||++..++...... +++|++++.+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~------g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK------GRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT------TCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEeeccc
Confidence 68899999999999999999999887642 47899999864
No 115
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.54 E-value=0.00058 Score=60.41 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=27.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++| ++|+||||+|||+|+..++... +...++++..
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~~---------~~~~i~i~g~ 78 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANES---------GLNFISVKGP 78 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHHT---------TCEEEEEETT
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHHc---------CCCEEEEEcH
Confidence 4556 9999999999999999888654 2346667654
No 116
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.54 E-value=0.00033 Score=62.69 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=34.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+|.++.|.|++|+||||++..++...... +++|++++.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~------~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK------GRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT------TCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEecCCc
Confidence 68899999999999999999999877632 47899999865
No 117
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.48 E-value=0.00016 Score=71.17 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+.+.|.||+|+|||||+.-++.
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 78999999999999999999997664
No 118
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.47 E-value=0.00051 Score=65.89 Aligned_cols=37 Identities=27% Similarity=0.199 Sum_probs=29.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.++..-++|+|+||+|||+++..++... +.+.+++++
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~vn~ 271 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLING 271 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC---------SSEEEEEEH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh---------CCCEEEEEc
Confidence 5666679999999999999999887654 367777775
No 119
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.47 E-value=0.00096 Score=64.80 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=33.3
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-++-... .....+...|+++++ .+++||+++|-.
T Consensus 175 ~~P~lLlLDEPTs~LD~---------~~~~~l~~~L~~l~~-~g~tvi~vsHd~ 218 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLDI---------RQRLNAARAIRRLSE-EGKSVLVVEHDL 218 (538)
T ss_dssp SCCSEEEEESTTTTCCH---------HHHHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred cCCCEEEEECCcccCCH---------HHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 57999999987765432 455567778888876 599999999853
No 120
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.45 E-value=0.00093 Score=64.66 Aligned_cols=114 Identities=11% Similarity=0.133 Sum_probs=63.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeE
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRIL 179 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (357)
++...++|+||||+|||+++..++... +..+++++.........+...... ......
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l---------~~~~i~in~s~~~~~~~~~~~i~~--------------~~~~~~ 131 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL---------GYDILEQNASDVRSKTLLNAGVKN--------------ALDNMS 131 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT---------TCEEEEECTTSCCCHHHHHHTGGG--------------GTTBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---------CCCEEEEeCCCcchHHHHHHHHHH--------------Hhcccc
Confidence 456789999999999999999888765 367888877553332222211110 000000
Q ss_pred EeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 180 VLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 180 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
+..... .... ......+..+|+||.+..+.... .. .+..|.++.++.++++|++...
T Consensus 132 ~~~~~~--~~~~------~~~~~~~~~vliIDEid~l~~~~-------~~----~l~~L~~~l~~~~~~iIli~~~ 188 (516)
T 1sxj_A 132 VVGYFK--HNEE------AQNLNGKHFVIIMDEVDGMSGGD-------RG----GVGQLAQFCRKTSTPLILICNE 188 (516)
T ss_dssp STTTTT--C----------CCSSTTSEEEEECSGGGCCTTS-------TT----HHHHHHHHHHHCSSCEEEEESC
T ss_pred HHHHHh--hhhh------hhhccCCCeEEEEECCCccchhh-------HH----HHHHHHHHHHhcCCCEEEEEcC
Confidence 000000 0000 01123457899999999876431 11 2345666666778888877643
No 121
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.45 E-value=0.00097 Score=62.05 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
++.-++|+|+||+|||+++..++... +.+++++++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~---------~~~~~~v~~~~ 183 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES---------NATFFNISAAS 183 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT---------TCEEEEECSCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh---------cCcEEEeeHHH
Confidence 46689999999999999999987653 36788887643
No 122
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.45 E-value=0.00028 Score=59.56 Aligned_cols=126 Identities=12% Similarity=0.063 Sum_probs=62.1
Q ss_pred CCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCch
Q 035774 84 LPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPE 163 (357)
Q Consensus 84 i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~ 163 (357)
-++|+-.--.++.+--..|.+.+|+|+-|+||||.+++.+.+.... +.+|+.+...-+-... ...+... ..
T Consensus 10 ~~~~~~~~~~~m~~~~~~G~I~vitG~M~sGKTT~Llr~~~r~~~~------g~kvli~kp~~D~R~~-~~~I~Sr-~G- 80 (219)
T 3e2i_A 10 HSSGLVPRGSHMYETYHSGWIECITGSMFSGKSEELIRRLRRGIYA------KQKVVVFKPAIDDRYH-KEKVVSH-NG- 80 (219)
T ss_dssp -----------------CCEEEEEEECTTSCHHHHHHHHHHHHHHT------TCCEEEEEEC------------CB-TT-
T ss_pred cccCcccCCceEeeccCCceEEEEECCCCCCHHHHHHHHHHHHHHc------CCceEEEEeccCCcch-hhhHHHh-cC-
Confidence 3455544444554434668999999999999999888888777532 4678777653211100 0111111 00
Q ss_pred hhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q 035774 164 IFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAE 243 (357)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~ 243 (357)
...+.+.+. +..++.+.+ ..+.++|+||..+.+-. ++...|..++
T Consensus 81 ---------~~~~a~~v~---~~~di~~~i--------~~~~dvV~IDEaQFf~~--------------~~v~~l~~la- 125 (219)
T 3e2i_A 81 ---------NAIEAINIS---KASEIMTHD--------LTNVDVIGIDEVQFFDD--------------EIVSIVEKLS- 125 (219)
T ss_dssp ---------BCCEEEEES---SGGGGGGSC--------CTTCSEEEECCGGGSCT--------------HHHHHHHHHH-
T ss_pred ---------CceeeEEeC---CHHHHHHHH--------hcCCCEEEEechhcCCH--------------HHHHHHHHHH-
Confidence 000111111 122221111 24689999999996531 2566778888
Q ss_pred HcCCeEEEec
Q 035774 244 FSRIPIVVTN 253 (357)
Q Consensus 244 ~~~~~vv~~~ 253 (357)
+.|++|++..
T Consensus 126 ~~gi~Vi~~G 135 (219)
T 3e2i_A 126 ADGHRVIVAG 135 (219)
T ss_dssp HTTCEEEEEE
T ss_pred HCCCEEEEee
Confidence 6899988764
No 123
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.45 E-value=0.00065 Score=62.48 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.+..-++|+|+||+|||+++..++... +.+.++++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---------~~~~~~i~~~ 151 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---------GATFFSISAS 151 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---------TCEEEEEEGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---------CCeEEEEehH
Confidence 345679999999999999999998654 3567777663
No 124
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.43 E-value=0.00084 Score=63.47 Aligned_cols=57 Identities=28% Similarity=0.180 Sum_probs=46.0
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.+.+.||++.+|.+.. +-+|+.+.|.|+||+|||+|+..++.+.... . +.-++|...
T Consensus 132 ~e~l~TGir~ID~L~p--i~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~--~---~~i~V~~~i 188 (473)
T 1sky_E 132 VEILETGIKVVDLLAP--YIKGGKIGLFGGAGVGKTVLIQELIHNIAQE--H---GGISVFAGV 188 (473)
T ss_dssp CCEECCSCHHHHHHSC--EETTCEEEEECCSSSCHHHHHHHHHHHHHHH--T---CCCEEEEEE
T ss_pred CccccccchHHHHHhh--hccCCEEEEECCCCCCccHHHHHHHhhhhhc--c---CcEEEEeee
Confidence 5679999999999876 7789999999999999999999999887642 1 244566543
No 125
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.43 E-value=0.00066 Score=62.47 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=28.1
Q ss_pred hcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 95 LCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 95 l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
+..|..+|..++|+||||+|||+++..++....
T Consensus 63 ~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 63 IREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp HHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 335567788999999999999999999998764
No 126
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.42 E-value=0.00048 Score=67.92 Aligned_cols=26 Identities=46% Similarity=0.713 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.||+|+|||||+.-++.
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999999997664
No 127
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.40 E-value=0.00025 Score=65.91 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=30.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|+++.|.||+|||||||+..++. ..+ . ..-++|+..
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaG--l~~-~-----~G~I~i~G~ 82 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLR--LLN-T-----EGEIQIDGV 82 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHT--CSE-E-----EEEEEESSC
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhC--CCC-C-----CeEEEECCE
Confidence 88999999999999999999987763 332 2 345666654
No 128
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.39 E-value=0.00035 Score=58.14 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=70.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC-C--chHHHHHHHhccCchhhcccchHHHhhcCeE
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST-F--TSRRMIEMGASSFPEIFHSKGMAQEMAGRIL 179 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~-~--~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (357)
.++.|++.+|.||||.|.-++..++- .+.+|+++.+-.. . ....+.+... + .... ....+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g------~G~rV~~vQF~Kg~~~~gE~~~l~~L~--v----~~~~----~g~gf~ 92 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG------HGKNVGVVQFIKGTWPNGERNLLEPHG--V----EFQV----MATGFT 92 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH------TTCCEEEEESSCCSSCCHHHHHHGGGT--C----EEEE----CCTTCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEEeeCCCCCccHHHHHHhCC--c----EEEE----cccccc
Confidence 36778888899999999999999983 4699999977542 1 1122211110 0 0000 000111
Q ss_pred EeCCCC----HHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 180 VLQPTS----LSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 180 ~~~~~~----~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+... .......+..+...+.....++||+|.++......+ -...+++..|.+ +-.+..||+|...
T Consensus 93 -~~~~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~-------l~~~ev~~~l~~--Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 93 -WETQNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDY-------LPLEEVISALNA--RPGHQTVIITGRG 162 (196)
T ss_dssp -CCGGGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTS-------SCHHHHHHHHHT--SCTTCEEEEECSS
T ss_pred -cCCCCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCC-------CCHHHHHHHHHh--CcCCCEEEEECCC
Confidence 11111 122233445556666667899999999987544311 112234444432 3346788887643
No 129
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.38 E-value=0.00094 Score=60.41 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.+..+.|+||||+|||+++..++...... +.+++|++.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~------~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR------GYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT------TCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC------CCEEEEEEHH
Confidence 46679999999999999999998876531 3789999864
No 130
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.38 E-value=0.0016 Score=54.67 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
++|+|+||+|||+++..++....
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999987754
No 131
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.35 E-value=0.0011 Score=60.32 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=29.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+++|.|++|+|||+|+.+++.... ..++|++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~---------~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN---------LPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT---------CCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC---------CCEEEEEchh
Confidence 5999999999999999999987652 3478998753
No 132
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.34 E-value=0.00071 Score=60.52 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=34.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+|.++.|.|++|+||||++..++...... . +.+|++++.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~---G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--K---HKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--T---CCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--c---CCEEEEEecCc
Confidence 368899999999999999999999877531 2 46899999865
No 133
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.34 E-value=0.00071 Score=59.57 Aligned_cols=37 Identities=27% Similarity=0.177 Sum_probs=28.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.++..-++|+||||+|||++|..++... +.+.+++++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~---------~~~~~~i~~ 97 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES---------NFPFIKICS 97 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH---------TCSEEEEEC
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh---------CCCEEEEeC
Confidence 4556679999999999999999998764 255666654
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.32 E-value=0.00064 Score=62.83 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccC-CCCC-CCeEEEEeCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAH-YGGL-DGGVIYIDVE 145 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~-~gg~-~~~vl~i~~e 145 (357)
+..+.|+|+||+|||+++..++........ ..+. +..++|+++.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 458999999999999999999876532100 0011 3678888864
No 135
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.30 E-value=0.00052 Score=69.99 Aligned_cols=38 Identities=29% Similarity=0.252 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
|++++.-++|+||||+|||+++..++... +...++++.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l---------~~~~i~v~~ 271 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLING 271 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTT---------TCEEEEEEH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHc---------CCcEEEEEc
Confidence 58899999999999999999999887543 245566654
No 136
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.30 E-value=0.0026 Score=54.20 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.|.+..++|+.|+||||-+++.+.++.. .+.+|+++...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~------~g~kvli~kp~ 56 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI------AQYKCLVIKYA 56 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH------CCCeEEEEeec
Confidence 5899999999999999999999999874 35888888743
No 137
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.30 E-value=0.00072 Score=66.49 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=29.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|+++.|.||+|+|||||+.-++... ++ ....++++..
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~--~~-----~~G~i~i~g~ 405 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI--DP-----ERGRVEVDEL 405 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS--CC-----SEEEEEESSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc--cC-----CCcEEEECCE
Confidence 7899999999999999999998665322 21 2456666654
No 138
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.29 E-value=0.00022 Score=67.23 Aligned_cols=38 Identities=29% Similarity=0.253 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.++.|+|+||+||||++..++...+.. +.+|++++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~------G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR------GLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH------HCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEEeccc
Confidence 589999999999999999999887642 47899999874
No 139
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.29 E-value=0.0012 Score=59.98 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
|.+++|.|++|+|||+|+.+++... +++|+++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~-----------~~~~~~~~~ 64 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER-----------PGILIDCRE 64 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS-----------SEEEEEHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc-----------CcEEEEeec
Confidence 3699999999999999999988642 188998743
No 140
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.28 E-value=0.00045 Score=65.54 Aligned_cols=41 Identities=24% Similarity=0.243 Sum_probs=31.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 97 GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
|+..+..-++|+||||+|||+++..++.... +.+.++++..
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--------~~~~~~v~~~ 202 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSISSS 202 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--------SSEEEEECCC
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHcC--------CCCEEEEeHH
Confidence 3455667899999999999999999987652 2566666654
No 141
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.28 E-value=0.00014 Score=60.42 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=30.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|.++.|.|+|||||||++..++.. . +.+.++++.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~-------~~g~i~i~~d 43 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--P-------GVPKVHFHSD 43 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--S-------SSCEEEECTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--c-------CCCeEEEccc
Confidence 889999999999999999999988753 1 2456777764
No 142
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.25 E-value=0.0011 Score=65.48 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.||+|+|||||+.-++.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 78999999999999999999986653
No 143
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=97.25 E-value=0.0013 Score=62.43 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=47.6
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||++.+|-++. +-+|+=..|.|++|+|||++++..+.+.+. .+..|+|+-.-+
T Consensus 143 ~epl~TGiraID~l~P--igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~------~dv~~V~~~iGe 200 (502)
T 2qe7_A 143 HEPLQTGIKAIDSMIP--IGRGQRELIIGDRQTGKTTIAIDTIINQKG------QDVICIYVAIGQ 200 (502)
T ss_dssp CSBCCCSCHHHHHSSC--CBTTCBCEEEECSSSCHHHHHHHHHHGGGS------CSEEEEEEEESC
T ss_pred CCccccceeecccccc--cccCCEEEEECCCCCCchHHHHHHHHHhhc------CCcEEEEEECCC
Confidence 5679999999999987 889999999999999999998877776652 134677877644
No 144
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=97.24 E-value=0.00088 Score=46.05 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=51.7
Q ss_pred cccccccCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 035774 3 NKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSE 58 (357)
Q Consensus 3 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 58 (357)
..++++|+|+....+.|.++||+|+.|++..++.++.++-++..+.+.++...+.+
T Consensus 8 ~~~Ie~L~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 8 EMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp TCBGGGSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred cCcHHHhCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999888877654
No 145
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0015 Score=58.77 Aligned_cols=62 Identities=11% Similarity=-0.061 Sum_probs=39.3
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCC-CCeEEEEeCCCCCchHHH
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGL-DGGVIYIDVESTFTSRRM 153 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~-~~~vl~i~~e~~~~~~rl 153 (357)
.|...+.+| ++..+.|+|+||+|||+++..++.........++. ...++|+.+....+...+
T Consensus 35 ~L~~~i~~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 35 PIYDSLMSS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHTT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHH
T ss_pred HHHHHhcCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHH
Confidence 355556554 55677999999999999999998876432111111 246888887654444333
No 146
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.23 E-value=0.0028 Score=56.69 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
++.-++|+||||+|||+++..++......... ...++++++.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~--~~~~~~~~~~ 107 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYV--RKGHLVSVTR 107 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSS--SSCCEEEECG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCc--CCCcEEEEcH
Confidence 45569999999999999999888766431100 1246777764
No 147
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.22 E-value=0.00073 Score=62.36 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=26.9
Q ss_pred hcCCCCC--CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 95 LCGGVPF--GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 95 l~GGi~~--G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.--+.+ |+.+.|.|++|+|||||+..++...
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3334677 9999999999999999999888654
No 148
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.21 E-value=0.00043 Score=63.61 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
..+|.++.|+||+||||||++..++...
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3677799999999999999999887655
No 149
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.21 E-value=0.00039 Score=63.63 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=37.6
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
...+.||+..||.++. +.+|+.+.|.|++|+|||||+..++...
T Consensus 52 ~~~~~tg~~ald~ll~--i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 52 DQPFILGVRAIDGLLT--CGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CSEECCSCHHHHHHSC--EETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEeeee--ecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999965 9999999999999999999977777654
No 150
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.21 E-value=0.00098 Score=63.12 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+.-+.|+|+||+|||+|+..++...... ..+.+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~----~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN----EPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHH----CCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEeeHHH
Confidence 5689999999999999999988766432 1146789988653
No 151
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=97.21 E-value=0.0013 Score=62.36 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=47.4
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||++.+|-++. +-+|+=..|.|++|+|||++++..+.+.+. .+..|+|+-.-+
T Consensus 156 ~epl~TGiraID~l~P--igrGQR~~I~g~~g~GKT~Lal~~I~~~~~------~dv~~V~~~IGe 213 (515)
T 2r9v_A 156 DTPLQTGIKAIDSMIP--IGRGQRELIIGDRQTGKTAIAIDTIINQKG------QGVYCIYVAIGQ 213 (515)
T ss_dssp CSEECCSCHHHHHHSC--EETTCBEEEEEETTSSHHHHHHHHHHTTTT------TTEEEEEEEESC
T ss_pred CcchhcCccccccccc--cccCCEEEEEcCCCCCccHHHHHHHHHhhc------CCcEEEEEEcCC
Confidence 4679999999999987 889999999999999999998877766652 234677877654
No 152
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.20 E-value=0.00054 Score=64.77 Aligned_cols=56 Identities=23% Similarity=0.189 Sum_probs=43.4
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
...+.||...||.++. +.+|+.+.|.|++|+|||||+..++.... + ...++.+..+
T Consensus 138 ~~~~~tg~~vld~vl~--i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-~------~~G~i~~~G~ 193 (438)
T 2dpy_A 138 EHVLDTGVRAINALLT--VGRGQRMGLFAGSGVGKSVLLGMMARYTR-A------DVIVVGLIGE 193 (438)
T ss_dssp CSBCCCSCHHHHHHSC--CBTTCEEEEEECTTSSHHHHHHHHHHHSC-C------SEEEEEEESC
T ss_pred ceecCCCceEEeeeEE--ecCCCEEEEECCCCCCHHHHHHHHhcccC-C------CeEEEEEece
Confidence 3456678999999954 99999999999999999999777766542 1 3456666665
No 153
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=97.19 E-value=0.002 Score=61.31 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=48.0
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCC--CCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYG--GLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~g--g~~~~vl~i~~e~ 146 (357)
.+.+.||++.+|-++. +-+|+=..|.|++|+|||++++..+.+.+.....| +.+..|+|+-.-+
T Consensus 143 ~epl~TGiraID~l~P--igrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGe 208 (510)
T 2ck3_A 143 REPMQTGIKAVDSLVP--IGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQ 208 (510)
T ss_dssp CSBCCCSCHHHHHHSC--CBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESC
T ss_pred Cccccccceeeccccc--cccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCC
Confidence 5679999999999987 88999999999999999999887776665310000 0134578877644
No 154
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.19 E-value=0.0032 Score=59.41 Aligned_cols=59 Identities=27% Similarity=0.229 Sum_probs=48.5
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||+..+|-++. +-+|+=..|.|++|+|||+|+.+++.+.+... +.-++|.-.-+
T Consensus 134 ~e~l~TGir~ID~l~p--igkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~-----~~v~V~~~iGE 192 (482)
T 2ck3_D 134 QEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGYSVFAGVGE 192 (482)
T ss_dssp CCEECCSCHHHHHHSC--EETTCEEEEEECTTSSHHHHHHHHHHHTTTTC-----SSEEEEEEESC
T ss_pred CcCCccceEEEecccc--cccCCeeeeecCCCCChHHHHHHHHHhhHhhC-----CCEEEEEECCC
Confidence 4689999999999987 88999999999999999999999999876421 24567765443
No 155
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0029 Score=62.19 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=32.2
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-++-... .....+.+.|++++++ +.+||+++|--
T Consensus 238 ~~p~llllDEPts~LD~---------~~~~~l~~~l~~l~~~-g~tvi~vtHdl 281 (608)
T 3j16_B 238 QEADVYMFDEPSSYLDV---------KQRLNAAQIIRSLLAP-TKYVICVEHDL 281 (608)
T ss_dssp SCCSEEEEECTTTTCCH---------HHHHHHHHHHHGGGTT-TCEEEEECSCH
T ss_pred hCCCEEEEECcccCCCH---------HHHHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence 57999999987765432 4455567777777654 88999998853
No 156
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=97.18 E-value=0.0017 Score=61.68 Aligned_cols=58 Identities=24% Similarity=0.210 Sum_probs=47.8
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||++.+|-++. +-+|+=..|.|++|+|||++++..+.+.+. .+..|+|.-.-+
T Consensus 144 ~epl~TGiraID~l~P--igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~------~dv~~V~~~iGe 201 (507)
T 1fx0_A 144 YEPLQTGLIAIDAMIP--VGRGQRELIIGDRQTGKTAVATDTILNQQG------QNVICVYVAIGQ 201 (507)
T ss_dssp CSBCCCSCTTTTTTSC--CBTTCBCBEEESSSSSHHHHHHHHHHTCCT------TTCEEEEEEESC
T ss_pred CCcccccceecccccc--cccCCEEEEecCCCCCccHHHHHHHHHhhc------CCcEEEEEEcCC
Confidence 4679999999999987 889999999999999999998877776652 245678887654
No 157
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.17 E-value=0.00024 Score=59.48 Aligned_cols=42 Identities=29% Similarity=0.409 Sum_probs=34.3
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.. +..|...+.| +|+..-++|+||||+|||++|..++...
T Consensus 41 ~~~f-~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 41 FITF-LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHH-HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3434 6677777765 8988889999999999999999888765
No 158
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.16 E-value=0.0013 Score=67.56 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
+++|+++.|.||+|+|||||+.+++....
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~ 698 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALITI 698 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHH
Confidence 67899999999999999999998875443
No 159
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.16 E-value=0.0019 Score=63.52 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=33.0
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-++-... .....+.+.|++++++ +.+||+++|-.
T Consensus 245 ~~P~lLlLDEPTs~LD~---------~~~~~l~~~L~~l~~~-g~tvIivsHdl 288 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYLDI---------RQRLKVARVIRRLANE-GKAVLVVEHDL 288 (607)
T ss_dssp SCCSEEEEECTTTTCCH---------HHHHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred cCCCEEEEECCcccCCH---------HHHHHHHHHHHHHHhc-CCEEEEEecCh
Confidence 57999999987765432 4455677788888764 99999999853
No 160
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.16 E-value=0.0006 Score=65.41 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=28.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++| ++|+||||+|||+|+..++... +.+.++++..
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~~---------~~~~i~i~g~ 98 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGEA---------RVPFITASGS 98 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHHT---------TCCEEEEEGG
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHHh---------CCCEEEEehh
Confidence 5666 9999999999999999888654 2567777663
No 161
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=97.16 E-value=0.0026 Score=60.23 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=47.3
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||++.+|.++. +-+|+=..|.|++|+|||+++++.+.+... .+..|+|+-.-+
T Consensus 143 ~epl~TGikaID~l~P--igrGQR~~Ifg~~g~GKT~l~l~~I~n~~~------~dv~~V~~~IGe 200 (513)
T 3oaa_A 143 DQPVQTGYKAVDSMIP--IGRGQRELIIGDRQTGKTALAIDAIINQRD------SGIKCIYVAIGQ 200 (513)
T ss_dssp CCBCCCSCHHHHHHSC--CBTTCBCEEEESSSSSHHHHHHHHHHTTSS------SSCEEEEEEESC
T ss_pred Ccccccceeeeccccc--cccCCEEEeecCCCCCcchHHHHHHHhhcc------CCceEEEEEecC
Confidence 5689999999999987 889999999999999999998877666431 245678887644
No 162
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=97.15 E-value=0.0011 Score=46.96 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=51.6
Q ss_pred cccccccCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 035774 3 NKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSE 58 (357)
Q Consensus 3 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 58 (357)
+.++++|.|+....+-|.++||+|+.+++..++.++.++-++..+.+.++...+.+
T Consensus 11 ~~~I~~L~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~ 66 (86)
T 3k4g_A 11 LRPVDDLELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLAS 66 (86)
T ss_dssp GSBGGGGCCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHT
T ss_pred hCcHHHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999888876654
No 163
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.13 E-value=0.0003 Score=58.02 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|-.+|.++.|.||+|+|||||+..++...
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35679999999999999999999888653
No 164
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.13 E-value=0.008 Score=55.06 Aligned_cols=41 Identities=24% Similarity=0.117 Sum_probs=32.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|+++.|.|++|+||||++..++..... . ++.|.+...+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~---~---~G~V~l~g~D 194 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKN---E---GTKVLMAAGD 194 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHH---T---TCCEEEECCC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccc---c---CCEEEEeccc
Confidence 578999999999999999999999876542 1 3566666544
No 165
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.13 E-value=0.0072 Score=54.09 Aligned_cols=41 Identities=24% Similarity=0.117 Sum_probs=32.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+.+|+++.|.|++|+||||++..++..... . ++.|.+...+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~---~---~g~V~l~g~d 137 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKN---E---GTKVLMAAGD 137 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHH---T---TCCEEEECCC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHH---c---CCeEEEEeec
Confidence 678999999999999999999999876642 1 3566665543
No 166
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.09 E-value=0.00056 Score=56.50 Aligned_cols=47 Identities=30% Similarity=0.372 Sum_probs=32.9
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.||.-.. ..+|.++.|.|.|||||||++..++...... +..+.+++.
T Consensus 3 ~~~~~~~--~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~------~~~~~~~~~ 49 (186)
T 2yvu_A 3 ALTTYKC--IEKGIVVWLTGLPGSGKTTIATRLADLLQKE------GYRVEVLDG 49 (186)
T ss_dssp -----CC--CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT------TCCEEEEEH
T ss_pred ccccccc--cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc------CCeEEEeeH
Confidence 4666444 3578999999999999999999998766421 356778764
No 167
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.09 E-value=0.0009 Score=64.19 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=33.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+..+.-++|+|.+|||||+++..++...+.....+ .-.++.+|..+
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~--~v~l~liDpK~ 209 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPE--DVRFIMIDPKM 209 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTT--TEEEEEECCSS
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCc--eEEEEEECCch
Confidence 55677899999999999999999988766532221 24555666553
No 168
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=97.09 E-value=0.00084 Score=46.75 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=51.3
Q ss_pred cccccccCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 035774 3 NKLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSE 58 (357)
Q Consensus 3 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 58 (357)
+.++++|.|+....+.|.++||+|+.+++..++.++.++-++..+.+.++...+.+
T Consensus 15 ~~~Ie~L~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 15 EMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp GCBGGGSCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHhCCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999988888776654
No 169
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.09 E-value=0.002 Score=58.78 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
++|+||||+|||+++..++....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999888654
No 170
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.08 E-value=0.0036 Score=60.71 Aligned_cols=43 Identities=9% Similarity=0.086 Sum_probs=31.6
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
.+++++++|.-++-... .....+.+.|+++.+ +.+||+++|--
T Consensus 155 ~~p~illlDEPts~LD~---------~~~~~l~~~l~~l~~--g~tii~vsHdl 197 (538)
T 3ozx_A 155 READVYIFDQPSSYLDV---------RERMNMAKAIRELLK--NKYVIVVDHDL 197 (538)
T ss_dssp SCCSEEEEESTTTTCCH---------HHHHHHHHHHHHHCT--TSEEEEECSCH
T ss_pred cCCCEEEEECCcccCCH---------HHHHHHHHHHHHHhC--CCEEEEEEeCh
Confidence 57999999987765432 445556777777754 89999999853
No 171
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=97.05 E-value=0.0014 Score=44.78 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 035774 10 RLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSE 58 (357)
Q Consensus 10 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 58 (357)
|+++....+|.++|++|++++...+..+|..+.+++++++.+++.++.+
T Consensus 14 Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 14 GVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp TCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999987765
No 172
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.05 E-value=0.0012 Score=64.77 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLS 123 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia 123 (357)
+++|+++.|.||+|+|||||+.-++
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHh
Confidence 7899999999999999999998555
No 173
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.02 E-value=0.00044 Score=57.29 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|++++.++.|.|+|||||||++..++...
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 47788999999999999999999988654
No 174
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.01 E-value=0.0022 Score=58.27 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=39.6
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
.|+.++.. +.-.++.+.|..|+||||++.++|...+.. +.+|+.||++..
T Consensus 6 ~l~~~l~~--~~~~i~~~sgkGGvGKTt~a~~lA~~la~~------g~~vllid~D~~ 55 (334)
T 3iqw_A 6 TLQSILDQ--RSLRWIFVGGKGGVGKTTTSCSLAIQLAKV------RRSVLLLSTDPA 55 (334)
T ss_dssp SSHHHHHC--TTCCEEEEECSTTSSHHHHHHHHHHHHTTS------SSCEEEEECCSS
T ss_pred cHHHHhcC--CCeEEEEEeCCCCccHHHHHHHHHHHHHhC------CCcEEEEECCCC
Confidence 35555654 234688999999999999999999988752 589999999853
No 175
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.00 E-value=0.0004 Score=58.18 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+|+++.|.||+||||||++..++..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 467999999999999999999988765
No 176
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.99 E-value=0.00078 Score=72.35 Aligned_cols=40 Identities=38% Similarity=0.530 Sum_probs=30.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|+.+.|+|++|||||||+.-+..-. .+ ..+.++||..
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~--~p-----~~G~I~iDG~ 1141 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY--DT-----LGGEIFIDGS 1141 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS--CC-----SSSEEEETTE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc--cC-----CCCEEEECCE
Confidence 8899999999999999999998665432 11 2446777654
No 177
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.98 E-value=0.00077 Score=56.46 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=31.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.++|.++.|.|++||||||++..++...-. . +..++|++.+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~---~---G~~~~~~d~d 62 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ---K---GKLCYILDGD 62 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHH---T---TCCEEEEEHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh---c---CceEEEecCc
Confidence 368999999999999999999998876532 1 2445678753
No 178
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.97 E-value=0.0012 Score=71.00 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+.+.|.|++|||||||+.-++..
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 899999999999999999999866543
No 179
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.96 E-value=0.00051 Score=55.41 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=25.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+++.|.||+|+|||||+..++...
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999999999888654
No 180
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.94 E-value=0.00095 Score=59.42 Aligned_cols=37 Identities=30% Similarity=0.307 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
..+.+++|+|+|||||||++..++... +...++||.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~---------~~~~~~Is~D 67 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET---------QGNVIVIDND 67 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT---------TTCCEEECTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---------CCCeEEEech
Confidence 457899999999999999999988653 1346777763
No 181
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.94 E-value=0.00048 Score=58.13 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+++.|.||+|||||||+..++...
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999999887543
No 182
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.94 E-value=0.0023 Score=57.97 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
.++++.|.+|+||||++.++|...+.. +.+|+.||++..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~------G~rVLlvD~D~~ 53 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARS------GKKTLVISTDPA 53 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEECCSS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHC------CCcEEEEeCCCC
Confidence 789999999999999999999988852 589999999863
No 183
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.93 E-value=0.00087 Score=62.50 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=31.6
Q ss_pred CCcEEEE--EcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTEL--VGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I--~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+..++| +|+||+|||+++..++..........+.+..++|+++..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 4568888 999999999999999876532100001135789998643
No 184
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.93 E-value=0.00089 Score=54.90 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
++|.++.|.|++||||||++..++..... . +.++++++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~---~---g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC---H---GIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH---T---TCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh---C---CCcEEEECC
Confidence 67999999999999999999988875421 1 356777763
No 185
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.93 E-value=0.00052 Score=57.55 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|.++.|.|++||||||++..++...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999999887543
No 186
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.90 E-value=0.00054 Score=58.47 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-+++|+++.|.||+|+|||||+..++...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 38999999999999999999999877643
No 187
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=96.89 E-value=0.0058 Score=58.54 Aligned_cols=56 Identities=29% Similarity=0.289 Sum_probs=46.2
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||+..+|.++. +-+|+=..|.|++|+|||+++.+++.+.- ..-++|+-.-+
T Consensus 208 ~epl~TGirvID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~~--------~~~~V~~~iGE 263 (588)
T 3mfy_A 208 EVPLITGQRVIDTFFP--QAKGGTAAIPGPAGSGKTVTQHQLAKWSD--------AQVVIYIGCGE 263 (588)
T ss_dssp CSEECCSCHHHHHHSC--EETTCEEEECSCCSHHHHHHHHHHHHHSS--------CSEEEEEECCS
T ss_pred CcccccCcchhhccCC--cccCCeEEeecCCCCCHHHHHHHHHhccC--------CCEEEEEEecc
Confidence 4678899999999987 78999999999999999999999876532 24677776654
No 188
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.84 E-value=0.0011 Score=55.42 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
..+.|+|+||+|||+|+..++...... +.+++|+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~------~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR------NVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT------TCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEEEh
Confidence 578999999999999999998877532 467888876
No 189
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.83 E-value=0.00056 Score=58.28 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+++.|.||+|+|||||+..++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 7889999999999999999999887643
No 190
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.82 E-value=0.00059 Score=68.96 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=60.3
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhc
Q 035774 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAG 176 (357)
Q Consensus 97 GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 176 (357)
.|+.+..-++++||||+|||.+|..+|...- .+ ||.... . .+....
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~---------~~--f~~v~~----~---~l~s~~---------------- 551 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---------AN--FISIKG----P---ELLTMW---------------- 551 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTT---------CE--EEECCH----H---HHHTTT----------------
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhC---------Cc--eEEecc----c---hhhccc----------------
Confidence 4677777799999999999999998886542 33 333311 1 111110
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCC----CCCChHHHHHHHHHHHHHHHHcCCeEEE
Q 035774 177 RILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQ----RAPGQHPLSWHISLITSLAEFSRIPIVV 251 (357)
Q Consensus 177 ~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~----~~~r~~~~~~i~~~Lk~la~~~~~~vv~ 251 (357)
-..+...+.+++ ...+...+.+|+||.+-++....... .......+.+++..|..+....++.||.
T Consensus 552 -----vGese~~vr~lF----~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~ 621 (806)
T 3cf2_A 552 -----FGESEANVREIF----DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp -----CSSCHHHHHHHH----HHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEEC
T ss_pred -----cchHHHHHHHHH----HHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 001222233333 33345578999999999997652111 1112234556666666555555555553
No 191
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.82 E-value=0.0068 Score=57.40 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
..++|+||||+|||+++..++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 469999999999999999888764
No 192
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.82 E-value=0.00065 Score=57.32 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.++|.++.|.|++|||||||+..++...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887654
No 193
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.81 E-value=0.0078 Score=54.20 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
..+++++||||+|||+++..++... +..+++++...
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l---------~~~~~~i~~~~ 83 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV---------NADMMFVNGSD 83 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT---------TEEEEEEETTT
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh---------CCCEEEEcccc
Confidence 3589999999999999999988654 36788887643
No 194
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.79 E-value=0.00076 Score=56.95 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++|.++.|.||+|+||||++..++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999999888643
No 195
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.79 E-value=0.0033 Score=52.44 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=30.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
.+..+..|+||||++.++|...+.. +.+|++||++..
T Consensus 5 ~v~s~kgG~GKTt~a~~la~~la~~------g~~vlliD~D~~ 41 (206)
T 4dzz_A 5 SFLNPKGGSGKTTAVINIATALSRS------GYNIAVVDTDPQ 41 (206)
T ss_dssp EECCSSTTSSHHHHHHHHHHHHHHT------TCCEEEEECCTT
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC------CCeEEEEECCCC
Confidence 3445788999999999999988752 589999999853
No 196
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.78 E-value=0.0019 Score=61.20 Aligned_cols=59 Identities=24% Similarity=0.162 Sum_probs=48.8
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.+.||++.+|-++. +-+|+=..|.|++|+|||+|+.+++.+.+.. . +.-++|.-.-+
T Consensus 146 ~e~l~TGirvID~l~p--igkGqr~gIfgg~GvGKT~L~~~l~~~~a~~--~---~~v~V~~~iGE 204 (498)
T 1fx0_B 146 LSIFETGIKVVNLLAP--YRRGGKIGLFGGAGVGKTVLIMELINNIAKA--H---GGVSVFGGVGE 204 (498)
T ss_dssp CCCCCCSCTTHHHHSC--CCTTCCEEEEECSSSSHHHHHHHHHHHTTTT--C---SSCEEEEEESC
T ss_pred ccccccceeEeeeecc--cccCCeEEeecCCCCCchHHHHHHHHHHHhh--C---CCEEEEEEccc
Confidence 5689999999999987 8899999999999999999999999997642 1 24567765433
No 197
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=96.78 E-value=0.0026 Score=43.36 Aligned_cols=54 Identities=9% Similarity=0.172 Sum_probs=49.3
Q ss_pred ccccCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 035774 6 ISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSEI 59 (357)
Q Consensus 6 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 59 (357)
...|+.++....+|.++|++|++.+.+.+..+|..+.|++++.+.++...+.+.
T Consensus 9 ~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~ 62 (70)
T 1u9l_A 9 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNA 62 (70)
T ss_dssp HHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999998876553
No 198
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.78 E-value=0.0009 Score=56.04 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
++|.++.|.|+|||||||++..++... ..++++.+.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~-----------g~~~i~~d~ 62 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET-----------GLEFAEADA 62 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH-----------CCEEEEGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh-----------CCeEEcccc
Confidence 679999999999999999999887543 256777654
No 199
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.77 E-value=0.0028 Score=61.36 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=33.8
Q ss_pred eEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 206 KLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 206 ~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
-+||||.+..++... ...+...+..|-+.++.+|+.+|+.+|-..
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs 389 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKARAAGIHLILATQRPS 389 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 479999999886531 134556667777788899999999998654
No 200
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.77 E-value=0.0021 Score=64.31 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=30.1
Q ss_pred eeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 205 VKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 205 ~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
++++++|.-++-... .....+...|+++++ .+++||+++|-.
T Consensus 223 ~~lLlLDEPtsgLD~---------~~~~~l~~~l~~l~~-~g~tvi~vtHd~ 264 (670)
T 3ux8_A 223 GVLYVLDEPSIGLHQ---------RDNDRLIATLKSMRD-LGNTLIVVEHDE 264 (670)
T ss_dssp SCEEEEECTTTTCCG---------GGHHHHHHHHHHHHH-TTCEEEEECCCH
T ss_pred CCEEEEECCccCCCH---------HHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 349999988765543 334456777777765 499999999863
No 201
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.76 E-value=0.001 Score=59.59 Aligned_cols=36 Identities=31% Similarity=0.513 Sum_probs=29.9
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.|+.+.- .+++|+++.|.||+|+|||||+.-++...
T Consensus 115 vL~~vsl-~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLK-GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHH-TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceE-EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4555444 49999999999999999999999888665
No 202
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.76 E-value=0.00096 Score=55.82 Aligned_cols=28 Identities=25% Similarity=0.128 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|.++.|.|+|||||||++..++...
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6788999999999999999999998654
No 203
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.75 E-value=0.0013 Score=60.49 Aligned_cols=59 Identities=17% Similarity=0.048 Sum_probs=47.7
Q ss_pred CCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 82 GHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+.+.||+..+|-++. +-+|+=..|.|++|+|||+++.+++.++... +.+..|+|+-..+
T Consensus 157 e~~~tGiraID~l~P--igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~----~~dv~~V~~lIGE 215 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAP--IGKGQRGMIVAPPKAGKTTILKEIANGIAEN----HPDTIRIILLIDE 215 (427)
T ss_dssp STTCHHHHHHHHHSC--CBTTCEEEEEECTTCCHHHHHHHHHHHHHHH----CTTSEEEEEECSC
T ss_pred cchhccchhhhhccc--ccCCceEEEecCCCCChhHHHHHHHHHHhhc----CCCeEEEEEEecc
Confidence 467899999999987 7799999999999999999999998877542 1145677776543
No 204
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.75 E-value=0.0063 Score=62.66 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=25.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
+.+|+++.|.||+|+||||++.+++....
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~~~ 687 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVIVL 687 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999999865543
No 205
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=96.75 E-value=0.006 Score=55.90 Aligned_cols=51 Identities=18% Similarity=0.252 Sum_probs=40.7
Q ss_pred hhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc--cccCCCCCCCeEEEEeCCCC
Q 035774 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAA--LPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 89 ~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~--~~~~~gg~~~~vl~i~~e~~ 147 (357)
+.|+.++.. +.-.+++..|..|+||||++.++|...+ .. +.+|+.||++..
T Consensus 7 ~~l~~l~~~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~------G~rVLLvD~D~~ 59 (354)
T 2woj_A 7 PNLHSLITS--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQP------NKQFLLISTDPA 59 (354)
T ss_dssp SSCHHHHTC--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCT------TSCEEEEECCSS
T ss_pred ccHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC------CCeEEEEECCCC
Confidence 346666653 2346888899999999999999999887 53 589999999874
No 206
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=96.75 E-value=0.027 Score=44.93 Aligned_cols=134 Identities=13% Similarity=0.006 Sum_probs=73.0
Q ss_pred CCCCCCchhHHhhh-cCCCCCCcEEEEE-cCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhc
Q 035774 82 GHLPTRLKGLDAAL-CGGVPFGVVTELV-GPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGAS 159 (357)
Q Consensus 82 ~~i~TG~~~LD~~l-~GGi~~G~l~~I~-G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~ 159 (357)
..+|.|.+.+|..+ +||++.|.++||. ..+|.|=..|+.-++...... ..+..++||.-.......-+.+..
T Consensus 23 ~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~~----~~~r~vlwI~Pp~~l~~~~L~~~G-- 96 (161)
T 1oft_A 23 NGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEE----QDARWLTLIAPPASLTHEWLRRAG-- 96 (161)
T ss_dssp --------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHTC----SSSSEEEEESCCTTSCHHHHHHTT--
T ss_pred ccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhccc----ccCccEEEECCCCCCCHHHHHHcC--
Confidence 47899999999988 6789999999997 457778776777666654320 014789999876655544443322
Q ss_pred cCchhhcccchHHHhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHH
Q 035774 160 SFPEIFHSKGMAQEMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLIT 239 (357)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk 239 (357)
...+++.++++.+..+.. ..+++.++......||.. +..+ +.. -.+.|.
T Consensus 97 -------------l~~~rll~v~~~~~~daL---wa~EqALrsG~~~aVl~W-l~~l----------~~~----~~RRLq 145 (161)
T 1oft_A 97 -------------LNRERILLLQAKDNAAAL---ALSCEALRLGRSHTVVSW-LEPL----------SRA----ARKQLS 145 (161)
T ss_dssp -------------CCGGGEEEECCSSTTHHH---HHHHHHHHTTCEEEEEEC-CSSC----------CHH----HHHHHH
T ss_pred -------------CCHHHEEEEECCChHHHH---HHHHHHHhcCCccEEEEC-CCcC----------ChH----HHHHHH
Confidence 124678888887765554 445566767788888864 2211 111 356777
Q ss_pred HHHHHcCCeEEEe
Q 035774 240 SLAEFSRIPIVVT 252 (357)
Q Consensus 240 ~la~~~~~~vv~~ 252 (357)
--|++-++..+++
T Consensus 146 lAAe~g~~~~fll 158 (161)
T 1oft_A 146 RAAQLGQAQSLNI 158 (161)
T ss_dssp HHHHHTTCEEEEE
T ss_pred HHHHhCCCeEEEe
Confidence 7778777777765
No 207
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.74 E-value=0.0013 Score=57.63 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=29.7
Q ss_pred hhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 89 ~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.|+.+. +++|+++.|.||+||||||++..++...
T Consensus 15 ~vl~~i~---i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 15 DKVLELC---HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp THHHHGG---GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHh---hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4566654 8999999999999999999999887654
No 208
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.74 E-value=0.0022 Score=55.38 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=31.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
+.|.|..|+||||++.++|...+.. +.+|+.||++..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD------YDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT------CSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC------CCeEEEEeCCCC
Confidence 4458999999999999999988752 589999999864
No 209
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.74 E-value=0.00067 Score=56.83 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=21.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|.++.|.||+|+|||||+..++...
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999999887654
No 210
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.73 E-value=0.0044 Score=60.80 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=35.0
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcc-ccCCCCCCCeEEEEeCCC
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL-PAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~-~~~~gg~~~~vl~i~~e~ 146 (357)
.|...|..+-....++.|.|++|+|||+|+.+++..... ... ....++|++...
T Consensus 135 ~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~v~wv~~~~ 189 (591)
T 1z6t_A 135 AIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGC---FPGGVHWVSVGK 189 (591)
T ss_dssp HHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHH---CTTCEEEEEEES
T ss_pred HHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhh---CCCceEEEECCC
Confidence 355555432234679999999999999999998753210 000 124688988654
No 211
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.72 E-value=0.011 Score=54.25 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
..-.+.|+|.||+|||||+.+++...+.. +.+|..++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~------g~kV~vi~~Dp 117 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIER------GHRVAVLAVDP 117 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTT------TCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhC------CCceEEEecCC
Confidence 34589999999999999999999877632 57888888864
No 212
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.72 E-value=0.0021 Score=53.84 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=32.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.++|.++.|.|++||||||++..++..... . +..+.+++.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~---~---~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE---Q---GISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH---T---TCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh---c---CCeEEEeccCc
Confidence 567899999999999999999988865421 1 35677776543
No 213
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.69 E-value=0.0017 Score=59.58 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=36.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
-+...++++.|.+|+||||++.++|...+.. +.+|+.+|++..
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~------G~rVLlvD~D~~ 65 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEK------GLKVVIVSTDPA 65 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHS------SCCEEEEECCTT
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHC------CCeEEEEeCCCC
Confidence 4556788899999999999999999988852 589999999863
No 214
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.66 E-value=0.012 Score=59.80 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
++|+++.|.||+|+|||||+.+++....
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 6799999999999999999999887543
No 215
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.65 E-value=0.0079 Score=56.22 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=29.6
Q ss_pred eEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 206 KLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 206 ~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
+++++|..++-... .....+...|++++ + +++||+++|.
T Consensus 317 ~~LlLDEpt~~LD~---------~~~~~l~~~L~~l~-~-~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVDAGIGG---------AAAIAVAEQLSRLA-D-TRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTTTTCCH---------HHHHHHHHHHHHHT-T-TSEEEEECSC
T ss_pred CEEEEECCCCCCCH---------HHHHHHHHHHHHHh-C-CCEEEEEeCc
Confidence 89999988765432 45566777888877 3 8999999885
No 216
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.65 E-value=0.0057 Score=65.53 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+.+.|.|++|||||||+.-++.
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999986653
No 217
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.64 E-value=0.00087 Score=57.90 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.||+|+|||||+.-++.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999999997663
No 218
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.64 E-value=0.0072 Score=52.63 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+.+..+..|+||||++.++|...+.. +.+|++||.+.
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~------g~~VlliD~D~ 41 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQL------GHDVTIVDADI 41 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHT------TCCEEEEECCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhC------CCcEEEEECCC
Confidence 45567899999999999999988752 48999999976
No 219
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.64 E-value=0.0012 Score=55.51 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=25.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.+|.+++|+|+|||||||++..++...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5688999999999999999999988754
No 220
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.63 E-value=0.0014 Score=53.45 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
.+|.++.|.|+|||||||++..++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999999999988754
No 221
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.62 E-value=0.0031 Score=67.59 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+.+.|.|++|+|||||+.-++.
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999999987664
No 222
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.57 E-value=0.0012 Score=58.06 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999997764
No 223
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.57 E-value=0.0015 Score=53.25 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.++.|+|+|||||||++..++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999988754
No 224
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.56 E-value=0.0017 Score=56.89 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
++.+++|+|.|||||||++..++..... . +..+++++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~---~---g~~~i~~~~ 40 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSK---N---NIDVIVLGS 40 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH---T---TCCEEEECT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHh---C---CCEEEEECc
Confidence 4679999999999999999999876431 1 355665664
No 225
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.56 E-value=0.001 Score=57.63 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999999997663
No 226
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.55 E-value=0.00079 Score=57.75 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=19.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHH-HH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLS-LL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia-~~ 125 (357)
+++|.++.|.||+||||||++..++ ..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC--
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 6789999999999999999999887 54
No 227
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.55 E-value=0.0012 Score=57.57 Aligned_cols=26 Identities=42% Similarity=0.641 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999997774
No 228
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.55 E-value=0.00099 Score=57.23 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.||+|+|||||+.-++.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999999986663
No 229
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.54 E-value=0.0014 Score=53.23 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
.|.++.|.|+|||||||++..++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988754
No 230
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=96.54 E-value=0.003 Score=45.86 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=51.0
Q ss_pred ccccccCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 035774 4 KLISEMRLPKSIANIFAARNITTAKDALSLTELELMKLLDVELSEVRSALALVSE 58 (357)
Q Consensus 4 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 58 (357)
.++++|.|+....+-|.++||+|+.+++..++.+|.++-++..+.+.++...+.+
T Consensus 24 ~~Ie~L~LSvRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~ 78 (98)
T 1coo_A 24 RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 78 (98)
T ss_dssp SBGGGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred CcHHHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999888876654
No 231
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.54 E-value=0.013 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-++|+|+||+|||+++..++...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999997654
No 232
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.53 E-value=0.0014 Score=53.86 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+|.++.|.|+|||||||++..++...
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999988643
No 233
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.52 E-value=0.0015 Score=56.63 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=24.0
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
.|+.+-- -+++|.++.|.|++||||||++..++..
T Consensus 14 ~l~~isl-~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 14 GTENLYF-QSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eecceec-cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4555432 3788999999999999999999988764
No 234
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.51 E-value=0.0015 Score=54.91 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=30.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+++|.++.|.|+|||||||++..++... ..+.|++.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~----------~~~~~i~~D~ 55 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL----------PNCSVISQDD 55 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS----------TTEEEEEGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc----------CCcEEEeCCc
Confidence 7789999999999999999999877421 1467777764
No 235
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.50 E-value=0.0015 Score=56.98 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=29.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
...+.++.|.|+|||||||++..++... +..+++++.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l---------~~~~~~~~~D 66 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF---------QGNIVIIDGD 66 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT---------TTCCEEECGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc---------CCCcEEEecH
Confidence 3557899999999999999999988654 1346677765
No 236
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.49 E-value=0.0013 Score=57.74 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.||+|+|||||+.-++.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 88999999999999999999997764
No 237
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.49 E-value=0.0013 Score=54.32 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
|.++.|.|+||+||||++..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67999999999999999998874
No 238
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.48 E-value=0.0015 Score=55.07 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
++|.++.|.|++|||||||+..++...- ..+.|++.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~---------~~i~~v~~d~ 41 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG---------ERVALLPMDH 41 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG---------GGEEEEEGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEecCc
Confidence 5789999999999999999998876431 1366776543
No 239
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=96.43 E-value=0.0053 Score=59.06 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=45.9
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.+.+.||+..+|-++. +-+|+=..|.|++|+|||+++.+++.+.. ..-++|+-.-
T Consensus 213 ~epl~TGirvID~l~P--igrGqr~~Ifgg~g~GKT~L~~~ia~~~~--------~~v~V~~~iG 267 (600)
T 3vr4_A 213 DVPMITGQRVIDTFFP--VTKGGAAAVPGPFGAGKTVVQHQIAKWSD--------VDLVVYVGCG 267 (600)
T ss_dssp CSBCCCCCHHHHHHSC--CBTTCEEEEECCTTSCHHHHHHHHHHHSS--------CSEEEEEEEE
T ss_pred CceecccchhhhccCC--ccCCCEEeeecCCCccHHHHHHHHHhccC--------CCEEEEEEec
Confidence 5689999999999987 88999999999999999999999887642 2457776553
No 240
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.43 E-value=0.0028 Score=55.02 Aligned_cols=26 Identities=42% Similarity=0.657 Sum_probs=22.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++| +.|+||||+|||+++..++...
T Consensus 48 ~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 5566 9999999999999999888654
No 241
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.43 E-value=0.00097 Score=56.38 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++|+++.|.||+|+|||||+..++..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 588999999999999999999987755
No 242
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.42 E-value=0.0018 Score=58.25 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=33.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
+++|.++.|.|++|||||||+..++..... ..| ...+.|+..+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~~G--~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--WDH--HPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--STT--CCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--cCC--CCeEEEEecCcc
Confidence 688999999999999999999987754421 122 145778877654
No 243
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.41 E-value=0.0031 Score=56.65 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhc-cccCCCCCCCeEEEEeC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAA-LPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~-~~~~~gg~~~~vl~i~~ 144 (357)
+.-+.|+|+||+|||+|+..++.... .. +.+|+|++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~------g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK------GVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS------CCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc------CCcEEEEEH
Confidence 57899999999999999999998776 42 478888876
No 244
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.39 E-value=0.0022 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.078 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|.++.|.|+|||||||++..++...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998754
No 245
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.38 E-value=0.002 Score=52.58 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 035774 103 VVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
.++.|.|+|||||||++..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999886
No 246
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.37 E-value=0.019 Score=59.53 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=38.8
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHH
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRM 153 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl 153 (357)
.|...|.. .....++.|.|++|.|||+||.+++......... +..++|++.....+...+
T Consensus 139 eL~elL~~-~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~F---d~gV~WVsVs~~~d~~~I 198 (1221)
T 1vt4_I 139 KLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM---DFKIFWLNLKNCNSPETV 198 (1221)
T ss_dssp HHHHHHHH-CCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHH---SSCEEEEECCCSSSHHHH
T ss_pred HHHHHHhc-cCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhC---CCcEEEEEeCCCCCHHHH
Confidence 34444432 2335799999999999999999988532111111 246999998766555443
No 247
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.36 E-value=0.0033 Score=56.47 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=32.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhcc-ccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAAL-PAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~-~~~~gg~~~~vl~i~~e~ 146 (357)
..+|.++.|.|++|||||||+..++...-. + . .+.+.++++++
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~-~----~G~i~vi~~d~ 120 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWP-E----HRRVELITTDG 120 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST-T----CCCEEEEEGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC-C----CCeEEEEecCC
Confidence 367899999999999999999988764421 1 1 25677777664
No 248
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.35 E-value=0.0027 Score=58.67 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
++++|.++.|.||||+|||||+..++..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999999988864
No 249
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=96.35 E-value=0.0035 Score=59.11 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=48.0
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.+.+.||+..+|-++. +-+|+=..|.|++|+|||+|+.++|.+....++ +.+..++|.-.-
T Consensus 133 ~e~l~TGir~ID~l~p--igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~--~~~~~~V~~~iG 193 (469)
T 2c61_A 133 KDFIQTGISTIDGTNT--LVRGQKLPIFSASGLPHNEIALQIARQASVPGS--ESAFAVVFAAMG 193 (469)
T ss_dssp CSBCBCSCHHHHTTSC--CBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTC--SSCEEEEEEEEE
T ss_pred ccccceeeEeeeeeec--cccCCEEEEECCCCCCHHHHHHHHHHHHhhccC--CCCcEEEEEEcc
Confidence 4679999999999987 788999999999999999999999988765321 112356676553
No 250
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.34 E-value=0.0026 Score=53.16 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+|.++.|.||+|+|||||+..++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 368999999999999999999888654
No 251
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.34 E-value=0.0028 Score=52.18 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
.++|..+.|+|+|||||||++..++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999988865
No 252
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.33 E-value=0.0023 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.208 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++.|.|+|||||||++..++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999988654
No 253
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.32 E-value=0.017 Score=53.20 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=32.5
Q ss_pred CCCcEEEEE-cCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 100 PFGVVTELV-GPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 100 ~~G~l~~I~-G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.++.++.|+ |..|+||||++.++|...+.. +.+|++||++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~------g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANM------GKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHH------TCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhC------CCCEEEEECC
Confidence 345666665 599999999999999988752 5899999988
No 254
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=96.32 E-value=0.012 Score=53.21 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=34.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
-.++++.|.+|+||||++.++|...+.. +.+|+.+|++..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~------G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKV------RSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTS------SSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHC------CCeEEEEECCCC
Confidence 4688899999999999999999988852 589999999864
No 255
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.30 E-value=0.011 Score=60.82 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=51.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCC-CCCeEEEEeCCCCCchHHHHHHHhccCchhhcccchHHHhhcCeEEe
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGG-LDGGVIYIDVESTFTSRRMIEMGASSFPEIFHSKGMAQEMAGRILVL 181 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg-~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 181 (357)
.-++|+|+||+|||+++..++.......-... .+..+++++...-.. .. ..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------g~-------------~~------- 243 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------GA-------------KY------- 243 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------------------
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------cC-------------cc-------
Confidence 34789999999999999999987642100000 135677776532100 00 00
Q ss_pred CCCCHHHHHHHHHHHHHHhhh-cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEec
Q 035774 182 QPTSLSEFTESLEKIKVSLLQ-NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTN 253 (357)
Q Consensus 182 ~~~~~~~~~~~l~~l~~~~~~-~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~ 253 (357)
..++...+..+...+.. .+..+++||.+..+...... ..-..+...|+.+..+.++.+|.+.
T Consensus 244 ----~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~------~g~~~~~~~L~~~l~~~~i~~I~at 306 (854)
T 1qvr_A 244 ----RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA------EGAVDAGNMLKPALARGELRLIGAT 306 (854)
T ss_dssp ------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHHTTCCCEEEEE
T ss_pred ----chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc------cchHHHHHHHHHHHhCCCeEEEEec
Confidence 00112222222222222 35679999999988644211 1112234556666666777777654
No 256
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.29 E-value=0.00051 Score=70.05 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=26.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 97 GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-|+.++..++|+||||+|||+++..++...
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 367889999999999999999999998765
No 257
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.28 E-value=0.002 Score=53.21 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|.++.|.||+|+||||++..++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5689999999999999999888654
No 258
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.28 E-value=0.012 Score=50.30 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=29.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
+..|+.+++.|++|||||++...++......... +.+..+++..-
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-~~~~~~l~~~p 117 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-AAECNIVVTQP 117 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-GGGCEEEEEES
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-CCceEEEEecc
Confidence 4457899999999999998877776654332111 01235666654
No 259
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.27 E-value=0.0032 Score=53.45 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=25.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-+.+..++.|.|||||||+|.|..++...
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 36778899999999999999999998765
No 260
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.27 E-value=0.0079 Score=62.68 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=32.0
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVRP 257 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~~ 257 (357)
.+..+|++|.++.-... ......+...|+.++++.++++|+++|...
T Consensus 867 ~~~sLlLLDEp~~Gtd~--------~dg~~~~~~il~~L~~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 867 TAHSLVLVDELGRGTAT--------FDGTAIANAVVKELAETIKCRTLFSTHYHS 913 (1022)
T ss_dssp CTTCEEEEECTTTTSCH--------HHHHHHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred CCCcEEEEECCCCCCCh--------HHHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 46899999988754322 112333556677777777999999998643
No 261
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.27 E-value=0.0044 Score=51.02 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
++.|.|+|||||||++..++...-. .+..+.+++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~------~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN------QGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT------TTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh------cCceEEEEEC
Confidence 6899999999999999999876531 1355777753
No 262
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.24 E-value=0.003 Score=52.90 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+|.++.|.|+|||||||++..++...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998765
No 263
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.24 E-value=0.0034 Score=52.93 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=31.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
+++|.++.|.|++|+||||++..++...-. .. +.++++++.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~--~~---g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVR--DR---RVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHH--HH---CCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcc--cc---CCcEEEECC
Confidence 678899999999999999999998875421 01 245777763
No 264
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.20 E-value=0.0064 Score=52.83 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=34.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.-++.+.|.+|+||||++.+++...+ . +.+|+.++.+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~------g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-D------NYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-T------TSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-C------CCeEEEEeCCC
Confidence 4567899999999999999999998776 3 47899999775
No 265
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.19 E-value=0.0046 Score=58.00 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=47.1
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.+.+.||+..+|-++. +-+|+=..|.|++|+|||+|+.+++..+.... ++.+..++|.-.-
T Consensus 132 ~e~l~TGiraID~l~p--igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~--d~~~~~~V~~~iG 192 (465)
T 3vr4_D 132 DEFIQTGISAIDHLNT--LVRGQKLPVFSGSGLPHKELAAQIARQATVLD--SSDDFAVVFAAIG 192 (465)
T ss_dssp CCBCBCSCHHHHTTSC--CBTTCBCCEEECTTSCHHHHHHHHHHHCBCSS--CSSCEEEEEEEEE
T ss_pred ccccccCceEEecccc--cccCCEEEEeCCCCcChHHHHHHHHHHHHhcc--CCCceEEEEEEec
Confidence 5679999999999987 78899999999999999999999887764310 0123366776553
No 266
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.19 E-value=0.0029 Score=52.32 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.++.++.|.|+|||||||++..++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998654
No 267
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.18 E-value=0.0021 Score=57.17 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLS 123 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia 123 (357)
+++|+++.|.|++|+|||||+..++
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 8899999999999999999998665
No 268
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.18 E-value=0.0034 Score=51.38 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+..+.++.|.|+||+||||++..++...
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999988654
No 269
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.18 E-value=0.0032 Score=51.93 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.++.|.|+|||||||++..++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999888653
No 270
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.17 E-value=0.0046 Score=54.51 Aligned_cols=26 Identities=42% Similarity=0.657 Sum_probs=22.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++| +.|+||||+|||+|+..++...
T Consensus 72 ~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 72 IPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 5566 8999999999999999888654
No 271
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.16 E-value=0.0053 Score=53.64 Aligned_cols=36 Identities=22% Similarity=0.116 Sum_probs=29.3
Q ss_pred HHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 91 LDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 91 LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|...+.|..++..-++|+||||+|||.|+..+|...
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 555666644767789999999999999999888754
No 272
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.15 E-value=0.0036 Score=49.41 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+.-++|.|+||+|||++|..++..... .+.+.+ +++.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~------~~~~~v-~~~~ 60 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRN------AQGEFV-YREL 60 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTT------TTSCCE-EEEC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCc------cCCCEE-EECC
Confidence 345899999999999999988764432 135555 6654
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.15 E-value=0.0027 Score=51.27 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 035774 104 VTELVGPAGTGKTQFCLKL 122 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~i 122 (357)
++.|+|+|||||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999988
No 274
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.15 E-value=0.0037 Score=52.49 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
..+|.++.|.|+|||||||++..++...
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5578899999999999999999998764
No 275
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.14 E-value=0.0031 Score=54.91 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+++|+|+|||||||++..++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999998754
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.13 E-value=0.0038 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+..+.|.|+|||||||++..++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998654
No 277
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.11 E-value=0.0053 Score=54.82 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+...++|.||||+|||+++..++...... +.+++++++..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~------~~~~~~~~~~~ 85 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT------EEAMIRIDMTE 85 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC------GGGEEEEEGGG
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC------CcceEEeeccc
Confidence 34579999999999999999998876431 36788888754
No 278
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.11 E-value=0.0038 Score=52.45 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+|.++.|.|+|||||||++..++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998765
No 279
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.11 E-value=0.025 Score=50.76 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=35.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+..-.++.|+|.-|+||||.+.++++..+.. +.+|+.||++-
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~------GkkVllID~Dp 86 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL------GKRVLQIGCDP 86 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEEEESS
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHC------CCeEEEEecCC
Confidence 5567899999999999999999999988752 58999999984
No 280
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=96.11 E-value=0.0054 Score=58.70 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=45.8
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.+.+.||+..+|.++. +-+|+=..|.|++|+|||+++.+++.+.. ..-++|+-.-
T Consensus 202 ~epl~TGirvID~l~P--igrGqr~~Ifg~~g~GKT~l~~~ia~~~~--------~~v~V~~~iG 256 (578)
T 3gqb_A 202 NTPFLTGMRILDVLFP--VAMGGTAAIPGPFGSGKSVTQQSLAKWSN--------ADVVVYVGSG 256 (578)
T ss_dssp CSEECCSCHHHHTTSC--EETTCEEEECCCTTSCHHHHHHHHHHHSS--------CSEEEEEEEE
T ss_pred CCcccccchhhhhccc--ccCCCEEeeeCCCCccHHHHHHHHHhccC--------CCEEEEEEec
Confidence 5688999999999986 88999999999999999999999887642 2456776553
No 281
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.10 E-value=0.004 Score=51.92 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+|.++.|.|++||||||++..++...
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999888643
No 282
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.10 E-value=0.0033 Score=54.35 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++.++.|.|+|||||||++..++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999988654
No 283
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.07 E-value=0.003 Score=51.64 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=18.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++.++.|.|.|||||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999987653
No 284
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.06 E-value=0.0038 Score=52.13 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
..++.|+|+|||||||++..++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999888654
No 285
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.03 E-value=0.025 Score=50.03 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+.+..+..|+||||++.+++...+.. +.+|+.||++.
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~~------G~~VlliD~D~ 43 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLYG------GAKVAVIDLDL 43 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHHT------TCCEEEEECCT
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHC------CCcEEEEECCC
Confidence 33445788999999999999988752 58999999986
No 286
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.02 E-value=0.0075 Score=56.47 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.+|.++.|.||+||||||++..++..... . .+.++++..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~--~----~g~I~~~ed 203 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS--S----ERNILTVED 203 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC--T----TSCEEEEES
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC--C----CCEEEEecc
Confidence 67999999999999999999988865532 1 245666543
No 287
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.02 E-value=0.0061 Score=54.52 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=35.2
Q ss_pred CCCCCCchhHHhhhc---C--CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 82 GHLPTRLKGLDAALC---G--GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 82 ~~i~TG~~~LD~~l~---G--Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
..||||-+....+-. . .-..+.++.|+|..|+||||++.++|...+.. +.+|+.||++..
T Consensus 16 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~------G~~VlliD~D~~ 80 (307)
T 3end_A 16 LTIPTGADGEGSVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL------GKRVLQIGCDPK 80 (307)
T ss_dssp ------------------------CCEEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEEEESSS
T ss_pred ccCCcCccccchhhhhhccccccCCceEEEEECCCCccHHHHHHHHHHHHHHC------CCeEEEEeCCCC
Confidence 346665554443221 1 12356788888999999999999999988752 589999999853
No 288
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.01 E-value=0.0027 Score=52.72 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++.++.|.|+|||||||++..++...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998754
No 289
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.99 E-value=0.0031 Score=55.24 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=22.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
++ |+++.|.|++|+|||||+.-++-
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhC
Confidence 88 99999999999999999997764
No 290
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.98 E-value=0.0049 Score=52.25 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+|.++.|.|+|||||||++..++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998754
No 291
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.98 E-value=0.0072 Score=55.01 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=31.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+.+|.++.|.|+||+|||||+..++..... . ++.+.++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~---~---~g~v~i~~~d 92 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTA---A---GHKVAVLAVD 92 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHH---T---TCCEEEEEEC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhh---C---CCEEEEEEEc
Confidence 678999999999999999999988865432 1 3566666543
No 292
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.98 E-value=0.0051 Score=51.29 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
..+.++.|.|+|||||||++..++...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998754
No 293
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.97 E-value=0.0042 Score=52.95 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=22.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
..++.++.|.|+|||||||++..++...
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4566799999999999999999988643
No 294
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.96 E-value=0.093 Score=50.57 Aligned_cols=39 Identities=23% Similarity=0.145 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
...+++++|.||+||||++..++...-.. +..+..|+.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~------~~d~~v~s~D 72 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI------GVPTKVFNVG 72 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT------TCCEEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc------CCCeEEeccc
Confidence 34689999999999999999998765321 2456666653
No 295
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.95 E-value=0.037 Score=49.47 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
...++++||||+|||+++..++..+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999998753
No 296
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.95 E-value=0.007 Score=53.87 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+.-++|+||||+|||+++..++... +.+++++++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l---------~~~~~~i~~~ 84 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA---------NAPFIKVEAT 84 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH---------TCCEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---------CCCEEEEcch
Confidence 3467899999999999999988765 2567777764
No 297
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.94 E-value=0.021 Score=55.51 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH--hccccCCCCCCCeEEEEeCCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLL--AALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~--~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
...++.|.|.+|+|||+||.+++.. .... +.-..++|++....
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~----~~F~~~~wv~vs~~ 195 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIG----INYDSIVWLKDSGT 195 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBT----TTBSEEEEEECCCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHh----ccCCcEEEEEECCC
Confidence 4579999999999999999988851 1111 11257889987654
No 298
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.92 E-value=0.0053 Score=56.71 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=25.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
+++|.++.|.|++||||||++..++....
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 67899999999999999999998887553
No 299
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.88 E-value=0.005 Score=53.52 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++|.++.|.|++||||||++..++...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 678999999999999999999888543
No 300
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.87 E-value=0.011 Score=56.19 Aligned_cols=29 Identities=34% Similarity=0.445 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|..++.-++++||||+|||++|..++...
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 45566678999999999999999998875
No 301
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.87 E-value=0.0062 Score=52.14 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.+|.++.|.|+||+||||++..++...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6689999999999999999999888765
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.84 E-value=0.0045 Score=51.40 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|+.+.|.|++|+||||++..++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 6789999999999999999888765
No 303
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.83 E-value=0.005 Score=51.25 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.|..++|.|++|+|||+++..++...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 36789999999999999999998654
No 304
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.82 E-value=0.24 Score=38.75 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-+.|.|++|+|||+|+..++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999888654
No 305
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.82 E-value=0.0059 Score=51.40 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|.|||||||+|.|..++... ...+||+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----------g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----------GFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----------CCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----------CCeEEcHH
Confidence 57899999999999999999754 35678774
No 306
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.81 E-value=0.0071 Score=52.80 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.-++|+|+||+|||++|..++..... .+.+.+++++..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~------~~~~~~~v~~~~ 67 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSR------WQGPFISLNCAA 67 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTT------TTSCEEEEEGGG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCc------cCCCeEEEecCC
Confidence 46889999999999999988865431 146788998754
No 307
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.81 E-value=0.011 Score=47.88 Aligned_cols=38 Identities=24% Similarity=0.086 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.++.|+|++|+||||++..++..... . +.+|..|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~---~---g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR---E---GWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH---T---TCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh---c---CCeeeEEEeCC
Confidence 37899999999999999999876542 1 35666666543
No 308
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.79 E-value=0.0067 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
..++|+|+||+|||+++..++....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999987664
No 309
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.76 E-value=0.0072 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.++.|.|+|||||||++..++...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999888643
No 310
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.74 E-value=0.0056 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.++.|+|+|||||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 311
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.73 E-value=0.005 Score=57.79 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=40.9
Q ss_pred CCCCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 035774 81 GGHLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAAL 128 (357)
Q Consensus 81 ~~~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~ 128 (357)
.+.+.||++.+|.++. +-+|+=..|.|++|+|||+|+.+++..+..
T Consensus 128 ~e~l~TGiraID~l~p--igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 128 EQFIQTGISTIDVMNT--LVRGQKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp CCBCBCSCHHHHTTSC--CBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred cccccCcceeeecccc--cccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 5689999999999987 888999999999999999999998877643
No 312
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.73 E-value=0.013 Score=47.92 Aligned_cols=29 Identities=24% Similarity=0.162 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
...-.++.|+|++|+|||||+..++....
T Consensus 3 ~~~~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 3 KTMIPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 44456899999999999999999987643
No 313
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.73 E-value=0.019 Score=58.22 Aligned_cols=28 Identities=29% Similarity=0.241 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
..+.-++|+|+||+|||+++..++....
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 3566789999999999999999987764
No 314
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.71 E-value=0.01 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+++|+|+||+|||++|..++...
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999999887655
No 315
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.71 E-value=0.0059 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.|.||+|+|||||+..++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999888654
No 316
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.68 E-value=0.3 Score=38.13 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 035774 105 TELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.+.|++|+|||+|+..++...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998653
No 317
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.67 E-value=0.0063 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.|.|+|||||||++..++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998654
No 318
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.66 E-value=0.02 Score=51.93 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.+.|+||||+|||||+..++...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999999998765
No 319
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.65 E-value=0.0082 Score=50.02 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
..++.|.|+|||||||++..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988864
No 320
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.65 E-value=0.016 Score=52.97 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=39.9
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc--cccCCCCCCCeEEEEeCCC
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAA--LPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~--~~~~~gg~~~~vl~i~~e~ 146 (357)
.|+.++.. +.-.++.+.|..|+||||++.++|...+ .. +.+|+.||++.
T Consensus 8 ~L~~~l~~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~------g~~vllid~D~ 58 (348)
T 3io3_A 8 TLESIVQH--DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP------NEQFLLISTDP 58 (348)
T ss_dssp SSHHHHTC--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT------TSCEEEEECCS
T ss_pred hHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC------CCeEEEEECCC
Confidence 45666653 2347999999999999999999999887 53 58999999984
No 321
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.63 E-value=0.0083 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++-+++|.|+|||||||++..++...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998654
No 322
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.63 E-value=0.0078 Score=49.19 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+| +++|+|++|+|||+++..+...
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 5567 9999999999999999876643
No 323
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.63 E-value=0.0041 Score=57.21 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=29.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
+++|+++.|.|++|||||||+..++... +. ....+.++.
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~--~~-----~~g~I~ie~ 210 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEI--PF-----DQRLITIED 210 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTS--CT-----TSCEEEEES
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcC--CC-----CceEEEECC
Confidence 6789999999999999999999777533 21 245666763
No 324
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.62 E-value=0.0076 Score=50.98 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+|..+.|.|+|||||||++..++...
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999998754
No 325
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.61 E-value=0.0071 Score=51.31 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.++.|.|+|||||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 326
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.61 E-value=0.0038 Score=54.60 Aligned_cols=22 Identities=45% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 035774 105 TELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++|+||||+|||+++..++...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999998765
No 327
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.60 E-value=0.012 Score=51.47 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~ 148 (357)
++.|.|..|+||||++.++|...+.. +.+|++||++...
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~------G~~VlliD~D~q~ 41 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAM------GKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTT------TCCEEEEEECTTS
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHC------CCcEEEEcCCCCC
Confidence 45668999999999999999988742 5899999998543
No 328
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.58 E-value=0.28 Score=38.57 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 035774 105 TELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++|.|++|+|||+|+..++...
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6889999999999999988654
No 329
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.57 E-value=0.0083 Score=49.83 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++.|.|++||||||++..++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68899999999999999998754
No 330
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.57 E-value=0.013 Score=52.80 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
-++.|.|++|||||||+..++....... .+..+.+++.+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~----~~~~v~~i~~D~ 132 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWP----DHPNVEVITTDG 132 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTST----TCCCEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccC----CCCeEEEEeecc
Confidence 3899999999999999988775543100 135678888765
No 331
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.56 E-value=0.0053 Score=52.51 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
..++|.++.|.|++||||||++..++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999986653
No 332
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.56 E-value=0.011 Score=58.08 Aligned_cols=52 Identities=19% Similarity=0.130 Sum_probs=41.1
Q ss_pred hhHHhhhcC-CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 89 KGLDAALCG-GVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 89 ~~LD~~l~G-Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+.||.++.+ +-....++++.|.+|+|||+++.++|...+.. +.+|+++|++.
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~------g~~vllvD~Dp 365 (589)
T 1ihu_A 313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADM------GFDVHLTTSDP 365 (589)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEEESCC
T ss_pred chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHHC------CCcEEEEeCCC
Confidence 567776654 23345688889999999999999999988752 58999999985
No 333
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.55 E-value=0.009 Score=53.10 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
-.++.++.|+|++|||||||+..++....
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35678999999999999999998876553
No 334
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.55 E-value=0.0057 Score=55.62 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
++|+||||+|||+++..++....
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999988764
No 335
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.55 E-value=0.015 Score=51.04 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=33.2
Q ss_pred CCcEEEEEc-CCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 101 FGVVTELVG-PAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 101 ~G~l~~I~G-~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
+..++.|++ .+|.|||+++.++|...+.. +.+|++||++..
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~------G~rVLLID~D~~ 122 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQA------GYKTLIVDGDMR 122 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHT------TCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhC------CCeEEEEeCCCC
Confidence 345777775 58999999999999988852 589999999864
No 336
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.55 E-value=0.18 Score=40.44 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-++|.|++|+|||+|+..++...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999988653
No 337
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.54 E-value=0.0081 Score=49.35 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
..++.|.|+|||||||++..++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999988653
No 338
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.54 E-value=0.017 Score=51.81 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
...++|+|+||+|||+++..++...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998755
No 339
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.52 E-value=0.0087 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999988654
No 340
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.51 E-value=0.012 Score=58.55 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
....+.+|.||||+|||+.+.+++.....+ +.+++..+..
T Consensus 203 ~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~------~~~ILv~a~T 242 (646)
T 4b3f_X 203 SQKELAIIHGPPGTGKTTTVVEIILQAVKQ------GLKVLCCAPS 242 (646)
T ss_dssp HCSSEEEEECCTTSCHHHHHHHHHHHHHHT------TCCEEEEESS
T ss_pred cCCCceEEECCCCCCHHHHHHHHHHHHHhC------CCeEEEEcCc
Confidence 345699999999999999999998887653 4677776654
No 341
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.51 E-value=0.012 Score=53.51 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=33.0
Q ss_pred chhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 88 LKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 88 ~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+..|-..+..|-.+. ++|+||||+|||+++..++.....+... ...+++++..
T Consensus 46 ~~~l~~~l~~~~~~~--~ll~G~~G~GKT~la~~la~~l~~~~~~---~~~~~~~~~~ 98 (353)
T 1sxj_D 46 VTVLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELYGPDLM---KSRILELNAS 98 (353)
T ss_dssp HHHHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHHH---TTSEEEECSS
T ss_pred HHHHHHHHhcCCCCE--EEEECCCCCCHHHHHHHHHHHhCCCccc---ccceEEEccc
Confidence 344555554442222 8999999999999999998775321000 2456666554
No 342
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.50 E-value=0.014 Score=52.84 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.++.|+|++|||||+|+..++... ++.+|+.+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l-----------~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF-----------NGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-----------TEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc-----------CCceecccc
Confidence 489999999999999999998754 155677654
No 343
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.50 E-value=0.0092 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998765
No 344
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.49 E-value=0.0079 Score=49.69 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.++|+||+|+||||++..++...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999888653
No 345
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.48 E-value=0.024 Score=60.30 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=36.5
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
.|...|..+=....++.|.|++|+|||+||.+++...... .+.....++|++....
T Consensus 135 ~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~--~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 135 AIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLL--EGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp HHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHH--TTTSTTCEEEEECCSC
T ss_pred HHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHH--HhhCCCeEEEEEECCc
Confidence 4555553222345689999999999999999887653110 0012467889997654
No 346
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.46 E-value=0.009 Score=53.46 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=26.1
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHH
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia 123 (357)
++|+++. +..|.++.|.|++|+|||||+..++
T Consensus 155 gi~~L~~--~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVD--YLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHH--HTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHh--hccCcEEEEECCCCCCHHHHHHHHH
Confidence 3555554 4568899999999999999999888
No 347
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.45 E-value=0.0082 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.++.|.|+|||||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999988754
No 348
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.013 Score=52.32 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
++|+|+||+|||+++..++.....+ . ....+++++...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~-~---~~~~~~~~~~~~ 82 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGR-S---YADGVLELNASD 82 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGG-G---HHHHEEEECTTS
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCC-c---ccCCEEEecCcc
Confidence 8999999999999999999875321 0 123466666543
No 349
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.44 E-value=0.016 Score=51.74 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=33.1
Q ss_pred CCcEEEEEcC-CCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 101 FGVVTELVGP-AGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 101 ~G~l~~I~G~-~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
++.++.|++. +|.|||+++.++|...+.. +.+|++||++..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~------G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQS------DQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHT------TCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhC------CCcEEEEECCCC
Confidence 3457777664 8999999999999988752 589999999863
No 350
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.43 E-value=0.01 Score=47.82 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.+.|.|.|||||||++..++...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999888654
No 351
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.43 E-value=0.011 Score=53.95 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=26.9
Q ss_pred CCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 86 TRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 86 TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
.|++.|...+ +|+++.|.|+||+|||||+..++-
T Consensus 204 ~gl~~L~~~~-----~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 204 DGLKPLEEAL-----TGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp BTHHHHHHHH-----TTSEEEEECCTTSSHHHHHHHHHC
T ss_pred cCHHHHHHhc-----CCCEEEEECCCCccHHHHHHHHhc
Confidence 3556666543 678999999999999999987763
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.42 E-value=0.0098 Score=49.12 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++.|.|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998765
No 353
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.42 E-value=0.17 Score=40.73 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 035774 105 TELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++|.|++|+|||+|+..++...
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6899999999999999998644
No 354
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.42 E-value=0.0086 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 035774 104 VTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~ 124 (357)
++.|.|++||||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998864
No 355
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.41 E-value=0.0047 Score=56.03 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=29.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|+++.|.|++|||||||+.-++... +. ....+.++..
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~--~~-----~~g~i~i~~~ 207 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFI--PK-----EERIISIEDT 207 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGS--CT-----TSCEEEEESS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCC--cC-----CCcEEEECCe
Confidence 4679999999999999999988766433 21 2456666643
No 356
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.40 E-value=0.014 Score=53.77 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.+..-++|+||||+|||++|..++... +.+.+++++.
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l---------~~~~~~~~~~ 106 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHL---------DIPIAISDAT 106 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHT---------TCCEEEEEGG
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHh---------CCCEEEecch
Confidence 344568999999999999999988754 2567777653
No 357
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.40 E-value=0.0099 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999987643
No 358
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.38 E-value=0.013 Score=53.74 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
++.-++|+||||+|||++|..++... +.+.+.+++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---------~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---------DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---------TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---------CCCEEEech
Confidence 45568999999999999999998765 245666654
No 359
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.37 E-value=0.086 Score=43.10 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-++|.|++|+|||+|+..++...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998653
No 360
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.37 E-value=0.07 Score=53.57 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.|..++|+||+|+|||+.+...+...... . +.+++|+.-
T Consensus 45 ~~~~~lv~apTGsGKT~~~~l~il~~~~~--~---~~~il~i~P 83 (715)
T 2va8_A 45 EGNRLLLTSPTGSGKTLIAEMGIISFLLK--N---GGKAIYVTP 83 (715)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHH--S---CSEEEEECS
T ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHH--C---CCeEEEEeC
Confidence 46789999999999999998777765431 1 368888864
No 361
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.36 E-value=0.0099 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
.++.+++|.||+|+|||+|+..+|..
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999854
No 362
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.36 E-value=0.014 Score=51.71 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
++.|.|..|+||||++.++|...+.. +.+|+.||++..
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~------G~rVlliD~D~q 41 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEM------GKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT------TCCEEEEEECSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHC------CCeEEEEecCCC
Confidence 56668999999999999999988752 589999999854
No 363
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.31 E-value=0.017 Score=56.65 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=35.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
...++.+.|.+|+||||++.++|...+.. +.+|++||++.
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~------G~rVLlvd~D~ 46 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQ------GKRVLLVSTDP 46 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEEECCT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHC------CCcEEEEECCC
Confidence 35789999999999999999999988852 58999999985
No 364
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.0086 Score=56.84 Aligned_cols=28 Identities=32% Similarity=0.260 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+++|+++.|.|++|||||||+.-++...
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 6789999999999999999999777543
No 365
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.29 E-value=0.008 Score=52.20 Aligned_cols=37 Identities=27% Similarity=0.170 Sum_probs=28.6
Q ss_pred hhHHhhhcCCCCC---CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 89 KGLDAALCGGVPF---GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 89 ~~LD~~l~GGi~~---G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.-|+.+--- +.+ |..+.|.|++|+||||++..++...
T Consensus 33 ~~l~~~~~~-i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 33 QILKKKAEE-VKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHHHT-THHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhh-hhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 345554332 666 9999999999999999999888654
No 366
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.29 E-value=0.017 Score=52.53 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=33.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
...|.++.|.|+||+||||++..++...... ++++..++.+.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~------~~~v~v~~~d~ 94 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE------GLKVAVIAVDP 94 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHT------TCCEEEEEECC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc------CCeEEEEeecC
Confidence 3568899999999999999999998766421 46777777654
No 367
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.28 E-value=0.16 Score=39.89 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 035774 105 TELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.|.|++|+|||+|+..++...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6799999999999999998654
No 368
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.28 E-value=0.27 Score=39.43 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-++|.|++|+|||+|+..++...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47899999999999999988644
No 369
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.27 E-value=0.0094 Score=55.75 Aligned_cols=34 Identities=24% Similarity=0.141 Sum_probs=26.7
Q ss_pred HHhhhcCCCCCCcE--EEEEcCCCCcHHHHHHHHHHH
Q 035774 91 LDAALCGGVPFGVV--TELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 91 LD~~l~GGi~~G~l--~~I~G~~GsGKT~l~~~ia~~ 125 (357)
|+.+-- -+++|.+ +.|.|++|+|||||+..++..
T Consensus 30 L~~vsl-~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNK-SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHH-SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCce-EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 555432 2899999 999999999999999887643
No 370
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.26 E-value=0.0094 Score=49.68 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 035774 104 VTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~ 124 (357)
++.|.|++||||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 688999999999999998885
No 371
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.20 E-value=0.025 Score=52.48 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
..+.-+.|.|++|+|||+++..++..... . +..++++|..
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~~---~---~~~~~~~D~~ 72 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREYM---Q---GSRVIIIDPE 72 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHHT---T---TCCEEEEESS
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHHH---C---CCEEEEEeCC
Confidence 35667899999999999999999877653 2 3566677754
No 372
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.20 E-value=0.012 Score=49.59 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
.+-++.|.|++||||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998874
No 373
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.19 E-value=0.013 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.137 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.|.|.|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999888654
No 374
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.19 E-value=0.015 Score=49.78 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++..+.|.|+|||||||++..++...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998764
No 375
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.14 E-value=0.016 Score=51.93 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.+.-++|+|+||+|||++|..++..... .+.+.+++++..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~------~~~~~v~v~~~~ 63 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSAR------SDRPLVTLNCAA 63 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSC------SSSCCCEEECSS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcc------cCCCeEEEeCCC
Confidence 3456899999999999999988875532 146788888764
No 376
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.10 E-value=0.014 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.175 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998654
No 377
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.07 E-value=0.014 Score=56.73 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+|..++|+||||+|||+++..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999888654
No 378
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.07 E-value=0.18 Score=45.44 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAAL 128 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~ 128 (357)
...++++||||+|||+++..++.....
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 457999999999999999999987754
No 379
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.05 E-value=0.015 Score=49.85 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.-++.|.|+|||||||++..++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999888654
No 380
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.05 E-value=0.0041 Score=55.71 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=23.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|+||+|||||+..++.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 56789999999999999999987763
No 381
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.04 E-value=0.06 Score=54.12 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=67.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHh--c-cC--chh---hcccchHH
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA--S-SF--PEI---FHSKGMAQ 172 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~--~-~~--~~~---~~~~~~~~ 172 (357)
.|.-++|+||+|+|||..+...+...... . +.+++|+.-....-.+....+.. . .. ... ...... .
T Consensus 38 ~~~~~lv~apTGsGKT~~~~l~il~~~~~--~---~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-~ 111 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAEIAMVHRILT--Q---GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE-W 111 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHHHHHHHHHHH--H---CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG-G
T ss_pred CCCcEEEEcCCccHHHHHHHHHHHHHHHh--C---CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc-c
Confidence 35789999999999999886666544431 1 37899987543333333333210 0 00 000 000000 0
Q ss_pred HhhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEe
Q 035774 173 EMAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVT 252 (357)
Q Consensus 173 ~~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~ 252 (357)
.....+.+. +++.+..++..- ...-.++++||||.+..+... .|...+..++..++ . ++.+|++
T Consensus 112 ~~~~~Iiv~---Tpe~l~~~~~~~--~~~l~~~~~vIiDE~H~l~~~------~r~~~~~~ll~~l~----~-~~~ii~l 175 (720)
T 2zj8_A 112 LGKYDIIIA---TAEKFDSLLRHG--SSWIKDVKILVADEIHLIGSR------DRGATLEVILAHML----G-KAQIIGL 175 (720)
T ss_dssp GGGCSEEEE---CHHHHHHHHHHT--CTTGGGEEEEEEETGGGGGCT------TTHHHHHHHHHHHB----T-TBEEEEE
T ss_pred cCCCCEEEE---CHHHHHHHHHcC--hhhhhcCCEEEEECCcccCCC------cccHHHHHHHHHhh----c-CCeEEEE
Confidence 001233333 344444433321 111236899999999977432 24455555555554 1 6666666
Q ss_pred ccc
Q 035774 253 NQV 255 (357)
Q Consensus 253 ~q~ 255 (357)
+-.
T Consensus 176 SAT 178 (720)
T 2zj8_A 176 SAT 178 (720)
T ss_dssp ECC
T ss_pred cCC
Confidence 543
No 382
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.04 E-value=0.021 Score=48.63 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+.+..+..|+|||+++.++|...+.. +.+|++||.+.
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~------g~~VlliD~D~ 41 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGDR------GRKVLAVDGDL 41 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHT------TCCEEEEECCT
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhc------CCeEEEEeCCC
Confidence 34456788999999999999988752 58999999975
No 383
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.03 E-value=0.0072 Score=50.71 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
++.|.|++||||||++..++...-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 384
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.03 E-value=0.021 Score=49.69 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~ 148 (357)
+.+..+..|+||||++.++|...+.. +.+|++||++...
T Consensus 21 I~v~s~kGGvGKTT~a~nLA~~la~~------G~~VlliD~D~~~ 59 (262)
T 2ph1_A 21 IAVMSGKGGVGKSTVTALLAVHYARQ------GKKVGILDADFLG 59 (262)
T ss_dssp EEEECSSSCTTHHHHHHHHHHHHHHT------TCCEEEEECCSSC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHC------CCeEEEEeCCCCC
Confidence 55567888999999999999988752 5899999998654
No 385
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.03 E-value=0.57 Score=38.25 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-++|.|++|+|||+|+..+....
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999988654
No 386
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.00 E-value=0.028 Score=47.42 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEe
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~ 143 (357)
.+|.++.|.|++|+||||++..++..... .+.+|+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~------~~~~v~~~~ 41 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE------RGIEVQLTR 41 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT------TTCCEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCccccc
Confidence 46889999999999999999998876642 135665443
No 387
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.00 E-value=0.026 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.139 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
|.-++|+|+||+|||+++..++...
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3468999999999999999988754
No 388
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.97 E-value=0.016 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
..++.|+|++||||||++..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 389
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.97 E-value=0.027 Score=47.26 Aligned_cols=38 Identities=29% Similarity=0.297 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~ 148 (357)
+.+..+..|+||||++.++|...+.. + +|+.||++...
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~------g-~VlliD~D~q~ 40 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQ------G-ETLLIDGDPNR 40 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTT------S-CEEEEEECTTC
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhc------C-CEEEEECCCCC
Confidence 45567899999999999999988752 5 89999998643
No 390
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.92 E-value=0.018 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
..+++|+||+|+|||+|+..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998653
No 391
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.90 E-value=0.017 Score=50.12 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
-++.|+|++||||||++..++...-.+.-. ..+..+++++++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d-~~~~~~~~i~~D~ 65 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDS 65 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhccc-ccCCceEEEecCc
Confidence 489999999999999999888753211000 0124577888865
No 392
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.89 E-value=0.014 Score=51.87 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
++-++.|+|++||||||++..++...-. .+..+.+|+++.-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~------~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR------EGVKAVSIEGDAF 44 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH------HTCCEEEEEGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh------cCCCeeEeecchh
Confidence 3458999999999999999998864311 1245778887753
No 393
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.89 E-value=0.017 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+++|+||+|+|||+|+..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 458999999999999999999864
No 394
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.88 E-value=0.016 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+++|+|++|+|||+++..++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999998653
No 395
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.87 E-value=0.022 Score=50.78 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
++|+||||+|||+++..++....
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988753
No 396
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.87 E-value=0.017 Score=46.84 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.|.-++|.|+||+|||++++.++...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 36679999999999999999998753
No 397
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.84 E-value=0.018 Score=49.32 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
..+|.++.|.|++||||||++..++...
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999999887643
No 398
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.84 E-value=0.036 Score=47.41 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=31.6
Q ss_pred CcEE-EEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 102 GVVT-ELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 102 G~l~-~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
+.++ +..+..|+||||++.++|...+.. . +.+|++||++..
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~--~---g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQE--P---DIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTS--T---TCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhC--c---CCCEEEEECCCC
Confidence 3444 445778999999999999988742 1 489999999854
No 399
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.83 E-value=0.016 Score=51.95 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 035774 105 TELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
++|+||||+|||+++..++....
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 89999999999999999998753
No 400
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.82 E-value=0.012 Score=52.55 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=26.2
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
.+|+++. +..|+++.|.|+||+|||||+..++.
T Consensus 159 gv~~lf~--~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 159 GIEELKE--YLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp THHHHHH--HHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred CHHHHHH--HhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 3555554 55688999999999999999987763
No 401
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=94.82 E-value=0.033 Score=49.29 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=31.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
-+.+..+.+|.|||+++.++|...+.. +.+|++||++..
T Consensus 94 vI~vts~kgG~GKTtva~nLA~~lA~~------G~rVLLID~D~~ 132 (286)
T 3la6_A 94 VLMMTGVSPSIGMTFVCANLAAVISQT------NKRVLLIDCDMR 132 (286)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHTT------TCCEEEEECCTT
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhC------CCCEEEEeccCC
Confidence 344555678999999999999988852 589999999864
No 402
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.81 E-value=0.016 Score=48.75 Aligned_cols=23 Identities=17% Similarity=0.017 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.|.|+|||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998754
No 403
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=94.81 E-value=0.026 Score=48.77 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
+.+..+..|+||||++.++|...+.. +.+|++||++.
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~------g~~VlliD~D~ 41 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQK------GKKTVVIDFAI 41 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHT------TCCEEEEECCC
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhC------CCcEEEEECCC
Confidence 34446788999999999999988752 58999999986
No 404
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.80 E-value=0.015 Score=54.59 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
...+++|+|+|||||||++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998874
No 405
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.79 E-value=0.017 Score=51.42 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
.+++|.|+|||||||++..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998863
No 406
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.77 E-value=0.0061 Score=47.93 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=17.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 035774 103 VVTELVGPAGTGKTQFCLKLS 123 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia 123 (357)
.-++|.|+||+|||++|..++
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGC
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 348899999999999988555
No 407
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.76 E-value=0.47 Score=38.41 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
=++|.|++|+|||+|+..++...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999988644
No 408
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.75 E-value=0.023 Score=49.53 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=32.2
Q ss_pred CcEEEE-EcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCC
Q 035774 102 GVVTEL-VGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148 (357)
Q Consensus 102 G~l~~I-~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~ 148 (357)
+.++.| .+..|+||||++.++|...+ . +.+|++||++...
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~------g~~VlliD~D~~~ 67 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-K------NNKVLLIDMDTQA 67 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-T------TSCEEEEEECTTC
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-C------CCCEEEEECCCCC
Confidence 445554 78889999999999998887 3 5899999998643
No 409
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.73 E-value=0.035 Score=50.68 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+.+.++.|.|+||+|||||...++...... ++++..+..+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~------~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER------GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT------TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc------CCeEEEEeec
Confidence 457799999999999999999998654321 2455555544
No 410
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.70 E-value=0.025 Score=49.06 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=32.2
Q ss_pred CcEEEEE-cCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 102 GVVTELV-GPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 102 G~l~~I~-G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
+.++.|+ +..|+||||++.++|...+.. +.+|++||++..
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~ 46 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLARL------GKRVLLVDLDPQ 46 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHT------TCCEEEEECCTT
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHHC------CCCEEEEECCCC
Confidence 4556664 788999999999999988752 589999999863
No 411
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.68 E-value=0.14 Score=47.99 Aligned_cols=38 Identities=21% Similarity=0.027 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCCCCCCeEEEEeC
Q 035774 101 FGVVTELVGPAGTGKTQFC-LKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~-~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
+|+.+++.|++|+|||..+ ..++..+.. . +..++|+.-
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~---~---g~~~lvl~P 39 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK---K---RLRTVILAP 39 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH---T---TCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh---C---CCCEEEECc
Confidence 4788999999999999986 444434432 1 367888864
No 412
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.67 E-value=0.025 Score=50.19 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=32.2
Q ss_pred CcEEEEEc---CCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCC
Q 035774 102 GVVTELVG---PAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVEST 147 (357)
Q Consensus 102 G~l~~I~G---~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~ 147 (357)
+.++.|++ ..|+||||++.++|...+.. +.+|+.||++..
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~------G~rVlliD~D~q 76 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKL------NLKVLMIDKDLQ 76 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHT------TCCEEEEEECTT
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhC------CCeEEEEeCCCC
Confidence 44566664 99999999999999887742 589999999864
No 413
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.67 E-value=0.022 Score=47.29 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
-.++.|+|.+||||||++..++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458899999999999999988864
No 414
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.66 E-value=0.01 Score=57.11 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
++.|..+.|+|++||||||++..++... +. ..+.+.|..
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i--~~-----~~giitied 295 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFI--PP-----DAKVVSIED 295 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGS--CT-----TCCEEEEES
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhC--CC-----CCCEEEEcC
Confidence 3678999999999999999998766433 21 345666653
No 415
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=94.66 E-value=0.084 Score=49.90 Aligned_cols=39 Identities=18% Similarity=0.049 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCCcHHH-HHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 100 PFGVVTELVGPAGTGKTQ-FCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~-l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
..++++++.|++|||||. ++..++...... +..++|+.-
T Consensus 17 ~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~------~~~~lvl~P 56 (451)
T 2jlq_A 17 RKKRLTIMDLHPGAGKTKRILPSIVREALLR------RLRTLILAP 56 (451)
T ss_dssp STTCEEEECCCTTSSCCTTHHHHHHHHHHHT------TCCEEEEES
T ss_pred hcCCeEEEECCCCCCHhhHHHHHHHHHHHhc------CCcEEEECC
Confidence 347889999999999999 577776655431 367888863
No 416
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.57 E-value=0.0095 Score=49.70 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=26.3
Q ss_pred hhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHH
Q 035774 89 KGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLS 123 (357)
Q Consensus 89 ~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia 123 (357)
..|+. +. +.+|..+.|.|++|+|||||+..++
T Consensus 16 ~~l~~-~~--~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 16 PDIRH-LP--SDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSGGG-SS--CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCHhH-CC--CCCCcEEEEECCCCCCHHHHHHHHh
Confidence 45555 43 7889999999999999999998765
No 417
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.54 E-value=0.024 Score=47.09 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++.|.|++||||||++..++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999888643
No 418
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.53 E-value=0.023 Score=48.52 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=21.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 98 GVPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 98 Gi~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-+.+|.++.|.|++|+||||++..++...
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999888665
No 419
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.47 E-value=0.018 Score=55.94 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+++|.++.|.|++||||||++..++...-. .+ +..+.|++.+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~---~~--G~~i~~lDgD 407 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLME---MG--GRCVTLLDGD 407 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHT---TC--SSCEEEESSH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcc---cC--CceEEEECCc
Confidence 568999999999999999999988876532 11 1346667763
No 420
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.43 E-value=0.14 Score=56.26 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=76.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHh---ccCc----hhhcccch-H
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGA---SSFP----EIFHSKGM-A 171 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~---~~~~----~~~~~~~~-~ 171 (357)
..++-++|++|+|||||..+.-.+.+..... .+.+++|+.--..+..++...... .... ........ .
T Consensus 940 ~~~~nvlv~APTGSGKTliaelail~~l~~~----~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~ 1015 (1724)
T 4f92_B 940 NSDDNVFVGAPTGSGKTICAEFAILRMLLQS----SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL 1015 (1724)
T ss_dssp SCCSCEEEECCTTSCCHHHHHHHHHHHHHHC----TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH
T ss_pred cCCCcEEEEeCCCCCchHHHHHHHHHHHHhC----CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcch
Confidence 3467899999999999998766665555421 246899997644333333332211 1000 00000000 0
Q ss_pred HH-hhcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHc--CCe
Q 035774 172 QE-MAGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFS--RIP 248 (357)
Q Consensus 172 ~~-~~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~--~~~ 248 (357)
.. ....+.+. +++.+..++........-.++++||||.+..+-. .|...+..++..|+.++... ++-
T Consensus 1016 ~~~~~~~IiV~---TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-------~rg~~le~il~rl~~i~~~~~~~~r 1085 (1724)
T 4f92_B 1016 KLLGKGNIIIS---TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-------ENGPVLEVICSRMRYISSQIERPIR 1085 (1724)
T ss_dssp HHHHHCSEEEE---CHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-------TTHHHHHHHHHHHHHHHHTTSSCCE
T ss_pred hhcCCCCEEEE---CHHHHHHHHhCcccccccceeeEEEeechhhcCC-------CCCccHHHHHHHHHHHHhhcCCCce
Confidence 00 11234443 4444444332211100013699999999996631 14456667777788777643 566
Q ss_pred EEEeccc
Q 035774 249 IVVTNQV 255 (357)
Q Consensus 249 vv~~~q~ 255 (357)
+|+++-.
T Consensus 1086 iI~lSAT 1092 (1724)
T 4f92_B 1086 IVALSSS 1092 (1724)
T ss_dssp EEEEESC
T ss_pred EEEEeCC
Confidence 7776644
No 421
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.34 E-value=0.024 Score=50.02 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH
Q 035774 102 GVVTELVGPAGTGKTQFCLKLS 123 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia 123 (357)
..++.|+|++||||||++..++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999888
No 422
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.29 E-value=0.2 Score=40.65 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
--++|.|++|+|||+|+..++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998643
No 423
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.28 E-value=0.052 Score=45.56 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
-.+.|.|.+|+|||||+..++..... ..++..++.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~-------~~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGN-------EVKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTT-------TSCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcc-------CCeEEEEecCC
Confidence 37899999999999999999977532 24566666654
No 424
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.26 E-value=0.042 Score=53.69 Aligned_cols=38 Identities=24% Similarity=0.111 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+.+++|.|+||+|||+++..++...... +.++++....
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~------g~~Vl~~ApT 241 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL------GLEVGLCAPT 241 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT------TCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc------CCeEEEecCc
Confidence 5799999999999999999988766532 4678877653
No 425
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.24 E-value=0.018 Score=46.86 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
.++.|.|++|||||||+..++....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999998887654
No 426
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.17 E-value=0.019 Score=57.31 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=31.6
Q ss_pred CeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEecccc
Q 035774 204 QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQVR 256 (357)
Q Consensus 204 ~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~~ 256 (357)
+++++++|.-++-.. ......+...|++++++ +.|||+++|--
T Consensus 564 ~p~llllDEPt~~LD---------~~~~~~i~~~l~~l~~~-g~tvi~vtHd~ 606 (670)
T 3ux8_A 564 GRTLYILDEPTTGLH---------VDDIARLLDVLHRLVDN-GDTVLVIEHNL 606 (670)
T ss_dssp SCEEEEEESTTTTCC---------HHHHHHHHHHHHHHHHT-TCEEEEECCCH
T ss_pred CCcEEEEeCCCCCCC---------HHHHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 467999998775443 24556677788888765 99999998853
No 427
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.16 E-value=0.076 Score=53.17 Aligned_cols=133 Identities=14% Similarity=0.180 Sum_probs=68.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCCchHHHHHHHhccCchh-hccc------chHHH-
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTFTSRRMIEMGASSFPEI-FHSK------GMAQE- 173 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~~~~rl~~~~~~~~~~~-~~~~------~~~~~- 173 (357)
|.-++|+||+|+|||+.+...+...... +.+++|+.--..+-.+..... . .+... .... .....
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~l~i~P~r~La~q~~~~~-~-~~~~~g~~v~~~~G~~~~~~~~ 111 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIK------GGKSLYVVPLRALAGEKYESF-K-KWEKIGLRIGISTGDYESRDEH 111 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHT------TCCEEEEESSHHHHHHHHHHH-T-TTTTTTCCEEEECSSCBCCSSC
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHh------CCcEEEEeCcHHHHHHHHHHH-H-HHHhcCCEEEEEeCCCCcchhh
Confidence 5789999999999999987777665432 368899874322222222222 1 11000 0000 00000
Q ss_pred h-hcCeEEeCCCCHHHHHHHHHHHHHHhhhcCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEe
Q 035774 174 M-AGRILVLQPTSLSEFTESLEKIKVSLLQNQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVT 252 (357)
Q Consensus 174 ~-~~~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~ 252 (357)
. ...+.+. +++.+..++..-... -.++++||||.+..+... .|...+..++..++.+ ..++-+|++
T Consensus 112 ~~~~~Iiv~---Tpe~l~~~l~~~~~~--l~~~~~vIiDE~H~l~~~------~r~~~~~~ll~~l~~~--~~~~~ii~l 178 (702)
T 2p6r_A 112 LGDCDIIVT---TSEKADSLIRNRASW--IKAVSCLVVDEIHLLDSE------KRGATLEILVTKMRRM--NKALRVIGL 178 (702)
T ss_dssp STTCSEEEE---EHHHHHHHHHTTCSG--GGGCCEEEETTGGGGGCT------TTHHHHHHHHHHHHHH--CTTCEEEEE
T ss_pred ccCCCEEEE---CHHHHHHHHHcChhH--HhhcCEEEEeeeeecCCC------CcccHHHHHHHHHHhc--CcCceEEEE
Confidence 0 1123332 344444333321001 236899999999977432 2445566666666543 235667766
Q ss_pred ccc
Q 035774 253 NQV 255 (357)
Q Consensus 253 ~q~ 255 (357)
+-.
T Consensus 179 SAT 181 (702)
T 2p6r_A 179 SAT 181 (702)
T ss_dssp ECC
T ss_pred CCC
Confidence 543
No 428
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.15 E-value=0.031 Score=47.93 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+|.++.|.|.+|+||||++..++...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999988764
No 429
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.13 E-value=0.035 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
..++|+|+||+|||+++..++....
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987664
No 430
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.13 E-value=0.085 Score=44.16 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
=++|.|++|+|||+|+..++...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998654
No 431
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.12 E-value=0.037 Score=46.79 Aligned_cols=27 Identities=30% Similarity=0.220 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+|.++.|.|++|+||||.+..++...
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999988765
No 432
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.11 E-value=0.04 Score=52.27 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.++|.|+||+|||+++..++...... | ...++.+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~---~--~~~il~~a~T 83 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST---G--ETGIILAAPT 83 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT---T--CCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc---C--CceEEEecCc
Confidence 99999999999999999998877642 1 1356666554
No 433
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.06 E-value=0.036 Score=47.55 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=24.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 97 GGVPFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 97 GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
+.-.+|.++.|.|++|+||||++..++....
T Consensus 22 ~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 22 SNAMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp ----CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445688999999999999999999887654
No 434
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.04 E-value=0.047 Score=51.34 Aligned_cols=22 Identities=41% Similarity=0.747 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 035774 105 TELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++++||||+|||+++..+|...
T Consensus 53 iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 8899999999999999998765
No 435
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=94.04 E-value=1 Score=38.54 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=27.6
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEe
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~ 143 (357)
.-++|-+.|-.+. ..+++..-.+|+|||+++..++...... +.+|.||-
T Consensus 9 ~~~~~~~~~~~m~------k~i~ItgT~t~vGKT~vs~gL~~~L~~~------G~~V~~fK 57 (242)
T 3qxc_A 9 HHSSGRENLYFQG------HMLFISATNTNAGKTTCARLLAQYCNAC------GVKTILLK 57 (242)
T ss_dssp ----------CCC------EEEEEEESSTTSSHHHHHHHHHHHHHHT------TCCEEEEC
T ss_pred cccchhhHHhhcC------cEEEEEeCCCCCcHHHHHHHHHHHHHhC------CCceEEEe
Confidence 3455665554431 2345555569999999999999877642 57888885
No 436
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.04 E-value=0.11 Score=52.74 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=23.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
+..|+.++|.|++|+|||+++-.++....
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45578999999999999997777765443
No 437
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.99 E-value=0.034 Score=51.49 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+++|+||+|+|||+|+..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999999764
No 438
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.97 E-value=0.019 Score=52.08 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 035774 105 TELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
++|+|+||+|||+++..++...
T Consensus 48 vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 9999999999999999988754
No 439
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.97 E-value=0.093 Score=43.48 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
--++|.|++|+|||+|+..++.+..
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~~ 55 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNAF 55 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCCC
Confidence 3578999999999999999886544
No 440
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.97 E-value=0.02 Score=53.50 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 035774 104 VTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~ 124 (357)
++.|.|++|+|||||+..++.
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 999999999999999987764
No 441
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.95 E-value=0.037 Score=50.36 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=22.0
Q ss_pred CCCcE--EEEEcCCCCcHHHHHHHHHHHh
Q 035774 100 PFGVV--TELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 100 ~~G~l--~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+|+. +.|.|+||+||||++..++...
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34555 8999999999999998887654
No 442
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.93 E-value=0.033 Score=44.92 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+|.-+.|.|+||+|||+|...++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567799999999999999998874
No 443
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.88 E-value=0.029 Score=57.90 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+++|+++.|.|++|+|||||+.-++.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999998873
No 444
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.87 E-value=0.038 Score=50.75 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=29.7
Q ss_pred cCeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 203 NQVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 203 ~~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
.+++++++|..++-.. ......++..|+++.+ .|.+||+++|.
T Consensus 302 ~~p~~lllDEpt~~LD---------~~~~~~~~~~l~~l~~-~g~tvi~itH~ 344 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLD---------TENKEKIASVLKELER-LNKVIVFITHD 344 (365)
T ss_dssp TTCCEEEEESCCTTSC---------HHHHHHHHHHHHGGGG-SSSEEEEEESC
T ss_pred CCCCEEEEeCCCccCC---------HHHHHHHHHHHHHHHh-CCCEEEEEecc
Confidence 4688888887665432 2445566777777754 48899888875
No 445
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=93.75 E-value=0.48 Score=40.87 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=28.9
Q ss_pred CCCCCchhHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEe
Q 035774 83 HLPTRLKGLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143 (357)
Q Consensus 83 ~i~TG~~~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~ 143 (357)
.-++|..+--+.+.+ -....+++-.-.+|+|||+++..++...... +.+|.||-
T Consensus 9 ~~~~~~~~~~~~~~~-~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~------G~~V~~fK 62 (251)
T 3fgn_A 9 HHSSGLQGTENLYFQ-SHMTILVVTGTGTGVGKTVVCAALASAARQA------GIDVAVCK 62 (251)
T ss_dssp -------------CC-SSCEEEEEEESSTTSCHHHHHHHHHHHHHHT------TCCEEEEE
T ss_pred cccchhhHHHHHhcc-cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHC------CCeEEEEe
Confidence 345566554444443 2233455556677999999999999877642 57888885
No 446
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=93.73 E-value=0.031 Score=51.25 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCCCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVESTF 148 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~~~ 148 (357)
+.+..+..|+||||++.++|...+.. +.+|++||++...
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~~------G~rVLlID~D~q~ 42 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFALQ------GKRVLYVDCDPQC 42 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHHT------TCCEEEEECCTTC
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhC------CCcEEEEEcCCCC
Confidence 34455889999999999999988752 5899999998643
No 447
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.73 E-value=0.2 Score=40.74 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
--++|.|++|+|||+|+..++...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999887554
No 448
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.72 E-value=0.033 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.|.|++|+|||+|+..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999888643
No 449
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.71 E-value=0.047 Score=43.20 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 035774 103 VVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
.+++|+||+|+|||++.-.+..
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3999999999999999876654
No 450
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.71 E-value=0.036 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 035774 104 VTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
-+.|.|++|+|||+|+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999988864
No 451
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.69 E-value=0.3 Score=39.58 Aligned_cols=20 Identities=30% Similarity=0.243 Sum_probs=16.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 035774 105 TELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~ 125 (357)
++|.|++|+|||+|+ +++..
T Consensus 17 i~vvG~~~~GKssL~-~~l~~ 36 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNL-KWIYS 36 (198)
T ss_dssp EEEECSTTSSHHHHH-HHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHh
Confidence 789999999999999 55543
No 452
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.69 E-value=0.04 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+++ +++.|.||+|+|||||+..++..
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 778 99999999999999999977754
No 453
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=93.68 E-value=0.063 Score=45.23 Aligned_cols=34 Identities=15% Similarity=-0.142 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEe
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~ 143 (357)
+.+..+.+|+|||+++.++|...+.. +.+|++++
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~------G~rVll~d 37 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAA------GYRTAGYK 37 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHT------TCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEc
Confidence 44555579999999999999988752 57899987
No 454
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.66 E-value=0.07 Score=54.00 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.++|+||||+|||++|..++..... .+.+.+++++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~------~~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFG------DEESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHS------CTTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC------CCcceEEEech
Confidence 6899999999999999999887642 13566666653
No 455
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.64 E-value=0.028 Score=55.35 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+..|..++|.||||+|||+++..++...
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4566899999999999999999888643
No 456
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.63 E-value=0.89 Score=43.90 Aligned_cols=53 Identities=13% Similarity=0.001 Sum_probs=30.9
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccC-CCCCCCeEEEEeCC
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAH-YGGLDGGVIYIDVE 145 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~-~gg~~~~vl~i~~e 145 (357)
.++.++.| .|.-+++.+|+|+|||...+-.+...+.... .++.+..++|+.-.
T Consensus 102 ~i~~~l~~---~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Pt 155 (563)
T 3i5x_A 102 TIKPILSS---EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 155 (563)
T ss_dssp HHHHHHSS---SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred HHHHHhcC---CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCc
Confidence 45555532 5778999999999999764443333332111 11112468888643
No 457
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.63 E-value=0.055 Score=45.98 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhcc-ccCCCCCCCeEEEEeCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAAL-PAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~-~~~~gg~~~~vl~i~~e 145 (357)
.+|.++.|.|.+|+||||++..++..... . +.+|+++.-|
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~------g~~v~~~tre 59 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIY------GVNNVVLTRE 59 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH------CGGGEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcc------CceeeEeeeC
Confidence 46889999999999999999988876532 1 3567664444
No 458
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.61 E-value=0.04 Score=44.01 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 035774 104 VTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~ 124 (357)
.+.|.|+||+|||+|+..++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998874
No 459
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.60 E-value=0.12 Score=42.97 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-++|.|++|+|||+|+..++...
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999888543
No 460
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.56 E-value=0.071 Score=52.64 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+.+++|.||||+|||+++..++...... .+.++++....
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~-----~~~~ilv~a~t 233 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQ-----GNGPVLVCAPS 233 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTS-----SSCCEEEEESS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHc-----CCCeEEEEeCc
Confidence 4589999999999999999988776531 13567766654
No 461
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.53 E-value=0.052 Score=45.77 Aligned_cols=27 Identities=19% Similarity=0.038 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
+|.++.|.|++|+||||.+..++....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998887654
No 462
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.51 E-value=0.089 Score=44.01 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEe
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~ 143 (357)
|.++.|-|..||||||.+..++..... +.+|++..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-------~~~v~~~~ 36 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK-------DYDVIMTR 36 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-------TSCEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC-------CCCEEEee
Confidence 568999999999999999888876531 35666554
No 463
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.50 E-value=0.061 Score=50.54 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
..=+.|.|++|+|||+++..++.+.+. + +.+++.+|..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~---~---g~~viv~Dpk 90 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLL---R---GDRMVIVDPN 90 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHH---T---TCEEEEEEET
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHH---C---CCcEEEEeCC
Confidence 346899999999999998888877764 2 3566666654
No 464
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.48 E-value=0.039 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.+.|.|++|+|||||+..++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999888654
No 465
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.39 E-value=0.036 Score=45.13 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 035774 105 TELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.|.|++|+|||+|+..++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999998874
No 466
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.31 E-value=0.047 Score=43.22 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-+.|.|++|+|||+|+..++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36889999999999999988643
No 467
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.26 E-value=0.049 Score=42.85 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 035774 105 TELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~ 124 (357)
++|.|++|+|||+|+..++.
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999998884
No 468
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.25 E-value=0.053 Score=45.70 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
.+.|.|.+|+|||+|+.+++....
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 688889999999999999998754
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.24 E-value=0.027 Score=49.09 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
.++.++.|.|.+|+||||++..++..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999877753
No 470
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.24 E-value=0.058 Score=51.29 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAA 127 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~ 127 (357)
...-++|+|+||+|||+++..++....
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 344568999999999999999998764
No 471
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.23 E-value=0.038 Score=49.68 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
=.++.|.|++|+|||||+..++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 358999999999999999988864
No 472
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=93.21 E-value=0.03 Score=56.94 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
||+|.+++|+|.+|||||+|+...++
T Consensus 33 iP~~~l~viTGvSGSGKSSLafdtl~ 58 (842)
T 2vf7_A 33 VPRDALVVFTGVSGSGKSSLAFGTLY 58 (842)
T ss_dssp EESSSEEEEESSTTSSHHHHHTTTHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999986654
No 473
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=93.16 E-value=0.24 Score=47.44 Aligned_cols=50 Identities=18% Similarity=-0.028 Sum_probs=33.8
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
.++.++.| .+.-+++.+++|+|||..+...+...+.. ++.+..++|+.-.
T Consensus 149 ai~~i~~~---~~~~~ll~apTGsGKT~~~~~~il~~l~~---~~~~~~vLvl~P~ 198 (508)
T 3fho_A 149 ALPLLLSN---PPRNMIGQSQSGTGKTAAFALTMLSRVDA---SVPKPQAICLAPS 198 (508)
T ss_dssp SHHHHHCS---SCCCEEEECCSSTTSHHHHHHHHHHHSCT---TCCSCCEEEECSC
T ss_pred HHHHHHcC---CCCCEEEECCCCccHHHHHHHHHHHHHHh---CCCCceEEEEECc
Confidence 45666655 34778999999999998876666655532 1223578888643
No 474
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.11 E-value=0.023 Score=54.49 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
.|.-++|+||||+|||++|..++...
T Consensus 40 ~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred cCCeeEeecCchHHHHHHHHHHHHHH
Confidence 34578999999999999999888644
No 475
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.08 E-value=0.051 Score=48.91 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+| ++.|.|++|+|||+|+--+..
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHH
Confidence 5667 999999999999999887663
No 476
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.03 E-value=0.059 Score=45.27 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.++.|.|++|||||+++..++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999988764
No 477
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.02 E-value=0.059 Score=49.30 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=22.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+| ++.|.|++|+|||++...+..
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHH
Confidence 6678 999999999999999887765
No 478
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.99 E-value=0.062 Score=50.43 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=23.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.+|.++.|.||+|+|||+|+..++..
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 556889999999999999999877653
No 479
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.94 E-value=0.058 Score=42.56 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 035774 105 TELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
+.|.|++|+|||+|+..++...
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 6889999999999999988644
No 480
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.93 E-value=0.057 Score=43.10 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 035774 105 TELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.|.|++|+|||+|+..++.
T Consensus 7 i~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCccHHHHHHHHhc
Confidence 78999999999999998874
No 481
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.92 E-value=0.088 Score=51.69 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEe
Q 035774 101 FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYID 143 (357)
Q Consensus 101 ~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~ 143 (357)
+|.++.|.|.|||||||++..++...... +.+++++|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~------G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCH------GIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc------CCeEEEec
Confidence 67899999999999999999998765311 24566665
No 482
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=92.89 E-value=0.058 Score=49.63 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDV 144 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~ 144 (357)
.++.+.|..|+||||++.++|...+.. +.+|++||+
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~------g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQ------GKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHT------TCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC------CCCeEEEeC
Confidence 467899999999999999999988752 589999999
No 483
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.88 E-value=1.4 Score=42.89 Aligned_cols=52 Identities=13% Similarity=0.001 Sum_probs=30.0
Q ss_pred hHHhhhcCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccC-CCCCCCeEEEEeC
Q 035774 90 GLDAALCGGVPFGVVTELVGPAGTGKTQFCLKLSLLAALPAH-YGGLDGGVIYIDV 144 (357)
Q Consensus 90 ~LD~~l~GGi~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~-~gg~~~~vl~i~~ 144 (357)
.++.++.+ .|.-+++.+|+|+|||...+-.+...+.... .++.+..++++.-
T Consensus 51 ~i~~il~~---~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~P 103 (579)
T 3sqw_A 51 TIKPILSS---EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAP 103 (579)
T ss_dssp HHHHHHCS---SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECS
T ss_pred HHHHHHcc---CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcc
Confidence 34555533 4678899999999999754433333322111 1111346888764
No 484
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=92.87 E-value=0.05 Score=55.85 Aligned_cols=42 Identities=10% Similarity=0.147 Sum_probs=31.0
Q ss_pred CeeEEEEeccccccCCCCCCCCCChHHHHHHHHHHHHHHHHcCCeEEEeccc
Q 035774 204 QVKLLVIDSMEALVPGVHEQRAPGQHPLSWHISLITSLAEFSRIPIVVTNQV 255 (357)
Q Consensus 204 ~~~lvvIDsl~~l~~~~~~~~~~r~~~~~~i~~~Lk~la~~~~~~vv~~~q~ 255 (357)
+++++|+|.-++-.. ......+...|+++++ .|.|||+++|-
T Consensus 826 ~p~LLILDEPTsGLD---------~~~~~~L~~lL~~L~~-~G~TVIvI~Hd 867 (916)
T 3pih_A 826 GRTLYILDEPTVGLH---------FEDVRKLVEVLHRLVD-RGNTVIVIEHN 867 (916)
T ss_dssp SSEEEEEESTTTTCC---------HHHHHHHHHHHHHHHH-TTCEEEEECCC
T ss_pred CCCEEEEECCCCCCC---------HHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 468999998775442 2556667788888865 48999999885
No 485
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.86 E-value=0.06 Score=42.73 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 035774 105 TELVGPAGTGKTQFCLKLS 123 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia 123 (357)
+.|.|++|+|||+|+..++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999886
No 486
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.81 E-value=0.07 Score=52.03 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 100 PFGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 100 ~~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+.|.++.|.|.|||||||++..++...... | +.++++++.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~---G--~~~~~~lD~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQ---G--GRSVSLLLGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHH---C--SSCEEEEEHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhccc---C--CceEEEECcH
Confidence 357899999999999999999998765321 1 1457777753
No 487
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.78 E-value=0.061 Score=43.64 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 035774 104 VTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
-+.|.|++|+|||+|+..++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998853
No 488
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.76 E-value=0.032 Score=57.50 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 035774 99 VPFGVVTELVGPAGTGKTQFCLKLSL 124 (357)
Q Consensus 99 i~~G~l~~I~G~~GsGKT~l~~~ia~ 124 (357)
+.+|+++.|.|++|+|||||+.-++.
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999997764
No 489
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.74 E-value=0.064 Score=42.57 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 035774 105 TELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.|.|++|+|||+|+..++..
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988853
No 490
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.69 E-value=0.065 Score=42.92 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 035774 105 TELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.|.|++|+|||+|+..++..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999998754
No 491
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.66 E-value=0.066 Score=42.48 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-+.|.|++|+|||+|+..++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36899999999999999988653
No 492
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.66 E-value=0.061 Score=42.63 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 035774 105 TELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.|.|++|+|||+|+..++..
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 689999999999999998854
No 493
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.63 E-value=0.066 Score=42.97 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-+.|.|++|+|||+|+..++...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999888643
No 494
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.63 E-value=0.068 Score=42.22 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 035774 105 TELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~ 125 (357)
+.|.|++|+|||+|+..+...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 688999999999999998864
No 495
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.63 E-value=0.066 Score=43.72 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 035774 102 GVVTELVGPAGTGKTQFCLKLSLL 125 (357)
Q Consensus 102 G~l~~I~G~~GsGKT~l~~~ia~~ 125 (357)
.--++|.|++|+|||+|+..++..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999988754
No 496
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.62 E-value=0.077 Score=45.21 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 035774 105 TELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 105 ~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
..|.|+|||||||+|..++...
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998755
No 497
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.59 E-value=0.068 Score=42.34 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035774 104 VTELVGPAGTGKTQFCLKLSLLA 126 (357)
Q Consensus 104 l~~I~G~~GsGKT~l~~~ia~~~ 126 (357)
-++|.|++|+|||+|+..++...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999988654
No 498
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.58 E-value=0.077 Score=51.42 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=35.0
Q ss_pred hHHhhhcCCCC----CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCC
Q 035774 90 GLDAALCGGVP----FGVVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVE 145 (357)
Q Consensus 90 ~LD~~l~GGi~----~G~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e 145 (357)
+....+.-..+ .+.++.|+|.+||||||++..++..... . +..+.+++.+
T Consensus 356 eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~---~---G~~~~~ld~D 409 (546)
T 2gks_A 356 EVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA---R---GRKVTLLDGD 409 (546)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH---T---TCCEEEECHH
T ss_pred hHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh---c---CCeEEEECch
Confidence 44444443342 3789999999999999999999876432 1 3567787753
No 499
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.47 E-value=0.1 Score=53.55 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=30.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
..++|+||||+|||++|..++..... .+.+.+++++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~------~~~~~i~i~~~~ 626 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD------TEEAMIRIDMTE 626 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS------SGGGEEEECTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC------CCCcEEEEechh
Confidence 47899999999999999999887642 146788888754
No 500
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.47 E-value=0.13 Score=51.88 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccccCCCCCCCeEEEEeCCC
Q 035774 103 VVTELVGPAGTGKTQFCLKLSLLAALPAHYGGLDGGVIYIDVES 146 (357)
Q Consensus 103 ~l~~I~G~~GsGKT~l~~~ia~~~~~~~~~gg~~~~vl~i~~e~ 146 (357)
.-++|+||||+|||+++..++... +.+.+++++..
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l---------~~~~~~i~~s~ 523 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL---------GIELLRFDMSE 523 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH---------TCEEEEEEGGG
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh---------cCCEEEEechh
Confidence 368999999999999999888765 25788888643
Done!