BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035779
         (659 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8NI29|FBX27_HUMAN F-box only protein 27 OS=Homo sapiens GN=FBXO27 PE=1 SV=2
          Length = 283

 Score = 40.0 bits (92), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 14/127 (11%)

Query: 344 GMKLILNLCLSDGFDTFPTLLCADGCSMIDRRMGIYGYPIEIQSLFYFALRCARQMLKPE 403
           G  LI N C  +G   +      DG  + + R  + G P +   +  F+  C +Q+L  E
Sbjct: 111 GRNLIRNPCGQEGLRKWMVQHGGDGWVVEENRTTVPGAPSQTCFVTSFSWCCKKQVLDLE 170

Query: 404 RDG--KELIE--RIDKRITALSYHIQKYYWLDFTQLNNIYRYKTE--EYSHTAVNKFNVI 457
            +G   EL++  RI+  ++         +W        +YR   +  + + T ++KF+ +
Sbjct: 171 EEGLWPELLDSGRIEICVSD--------WWGARHDSGCMYRLLVQLLDANQTVLDKFSAV 222

Query: 458 PDSIPDW 464
           PD IP W
Sbjct: 223 PDPIPQW 229


>sp|P04993|EX5A_ECOLI Exodeoxyribonuclease V alpha chain OS=Escherichia coli (strain K12)
           GN=recD PE=1 SV=2
          Length = 608

 Score = 33.5 bits (75), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 28/63 (44%)

Query: 175 LRSIVGNHQENGESTGAAMMEEALERLKKSYVYFKGKPVGTFAAMDPNAEALNYNQVFVR 234
           L  + G H   G  T AA + ++L  L+KSY +     +G  AA     +      VF +
Sbjct: 329 LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388

Query: 235 DFV 237
           DF 
Sbjct: 389 DFT 391


>sp|G5EFC3|KCNAG_CAEEL Potassium voltage-gated channel protein egl-36 OS=Caenorhabditis
           elegans GN=egl-36 PE=1 SV=1
          Length = 558

 Score = 33.1 bits (74), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 32  VDEDMVEQENMSHKEFMSAASSLAGKNSSSVDEATAADPLVEIQPNVTSSTEFIV 86
           +D++  ++EN +HK    + +S  G NSSS    T  D +V++ P+ T+ T  I+
Sbjct: 506 IDQNCCDEENHNHKHREKSENSDEGTNSSS---TTGVDTVVKLGPSETAITTTII 557


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,778,543
Number of Sequences: 539616
Number of extensions: 10865922
Number of successful extensions: 27517
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 27495
Number of HSP's gapped (non-prelim): 53
length of query: 659
length of database: 191,569,459
effective HSP length: 124
effective length of query: 535
effective length of database: 124,657,075
effective search space: 66691535125
effective search space used: 66691535125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)