BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035783
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 45 YIGNVLSLAVGEASVTELKQGSISEIASRVHDSITKVTNEAHFLDLIDWIECHRPGLMLA 104
Y GNV+ A A +L+ + AS++HD++ ++ N+ + +D++E L
Sbjct: 303 YFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDND-YLRSALDYLELQPDLKALV 361
Query: 105 RVVLGRDGPAVLMSSGRRFPVVELDFGFGSPVLGAVSSIIERSGVGYINQRPSAKCDGSW 164
R P + ++S R P+ + DFG+G P+ I G+ +I PS DGS
Sbjct: 362 RGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGG-IAYEGLSFI--LPSPTNDGSM 418
Query: 165 TVSAILWPELATALESDFIFQ 185
+V+ L E +S F++
Sbjct: 419 SVAISLQGEHMKLFQS-FLYD 438
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
Query: 45 YIGNVLSLAVGEASVTELKQGSISEIASRVHDSITKVTNEAHFLDLIDWIECHRPGLMLA 104
Y GNV+ A A +L+ + AS++HD++ ++ N+ + +D++E L
Sbjct: 303 YFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDND-YLRSALDYLELQPDLKALV 361
Query: 105 RVVLGRDGPAVLMSSGRRFPVVELDFGFGSPVLGAVSSIIERSGVGYINQRPSAKCDGSW 164
R P + ++S R P+ + DFG+G P+ I G+ +I PS DGS
Sbjct: 362 RGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGG-IAYEGLSFI--LPSPTNDGSM 418
Query: 165 TVSAILWPELATALES 180
+V+ L E +S
Sbjct: 419 SVAISLQGEHMKLFQS 434
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
Query: 45 YIGNVLSLAVGEASVTELKQGSISEIASRVHDSITKVTNEAHFLDLIDWIECHRPGLMLA 104
Y GNV+ A A +L+ + AS++HD++ ++ N+ + +D++E L
Sbjct: 300 YFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDND-YLRSALDYLELQPDLKALV 358
Query: 105 RVVLGRDGPAVLMSSGRRFPVVELDFGFGSPVLGAVSSIIERSGVGYINQRPSAKCDGSW 164
R P + ++S R P+ + DFG+G P+ I G+ +I PS DGS
Sbjct: 359 RGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGG-IAYEGLSFI--LPSPTNDGSM 415
Query: 165 TVSAILWPELATALES 180
+V+ L E +S
Sbjct: 416 SVAISLQGEHMKLFQS 431
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 18/194 (9%)
Query: 3 RLQQLASVNGKKRTKVEAFSAYIWKIMVTSIDEKHGKCKMGCYIGNVLSLAVGEASVTEL 62
R Q ++ K ++V+ AYIWK ++ K+G + V + +
Sbjct: 230 RAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHY 289
Query: 63 KQGSISEIASRVHDSITKVTNEAHFLDLIDWIEC--------HRPGLMLARVVLGRDGPA 114
G+I+ + D+ + F DLI + H L+ L P
Sbjct: 290 AMGNIATLLFAAVDA----EWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEPQ 345
Query: 115 VLMS--SGRRFPVVELDFGFGSPVLGAVSSIIERSGVGYINQRPSAKCDGSWTVS----A 168
L+S S R +LDFG+G P+ ++ +R+ ++ R + ++ A
Sbjct: 346 ELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEMA 405
Query: 169 ILWPELATALESDF 182
+L EL + ++SDF
Sbjct: 406 MLPVELLSLVDSDF 419
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 8 ASVNGKKRTKVEAFSAYIWKIMVTSIDEKHGKCKMGCYIGNVLSLAVGEA 57
A KK + F A++ + SIDEKH + G Y+G + S AV EA
Sbjct: 227 AKAETKKLIDLTQFPAFVTPMGKGSIDEKHPRFG-GVYVGTLSSPAVKEA 275
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 60 TELKQGSISEIASRVHDS--ITKVTNEAHFLDLIDWIECHRPGLMLARVVLGRDG 112
T L + + E+ +H + IT+VT F + + WIE +P A L DG
Sbjct: 22 TSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDG 76
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 29.6 bits (65), Expect = 1.1, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 60 TELKQGSISEIASRVHDS--ITKVTNEAHFLDLIDWIECHRPGLMLARVVLGRDG 112
T L + + E+ +H + IT+VT F + + WIE +P A L DG
Sbjct: 62 TSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDG 116
>pdb|2ZKR|WW Chain w, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 270
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 125 VVELDFGFGSPVLGAVSSIIERSGVGYINQRPSAKCDGSWTVSAI 169
+VE +G P L +V+ +I + G G IN++ A D S ++
Sbjct: 157 IVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSL 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,326,098
Number of Sequences: 62578
Number of extensions: 197515
Number of successful extensions: 465
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 13
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)