BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035784
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 102 VEGSMALMFNTCDGLEGPFINYLANELGKPMWGVGPLLPEQFYKSAGSVLDDHEMRTNRR 161
V ++ NT + LE IN L++ + ++ +GPL K + H++ +
Sbjct: 223 VNKDTTILLNTFNELESDVINALSSTIPS-IYPIGPL--PSLLKQTPQI---HQLDSLDS 276
Query: 162 SSNMTEDEIVQRLNLKSRGSVLYVSFGTEVDLTLDEYLVLANPLEASNRSFIWVIQ 217
+ + E + L K GSV+YV+FG+ +T ++ L A L +SF+W+I+
Sbjct: 277 NLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR 332
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 20/124 (16%)
Query: 97 HWMKEVEGSMALMFNTCDGLEGPFINYLANE-LGKP-MWGVGPLLPEQFYKSAGSVLDDH 154
H K + + ++ NT LE I L L KP ++ VGPL
Sbjct: 199 HNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPL---------------- 242
Query: 155 EMRTNRRSSNMTED-EIVQRLNLKSRGSVLYVSFGTEVDLTLDEYLVLANPLEASNRSFI 213
+ ++ + TE+ E ++ L+ + GSVLYVSFG+ LT ++ LA L S + F+
Sbjct: 243 -VNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFL 301
Query: 214 WVIQ 217
WVI+
Sbjct: 302 WVIR 305
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 171 VQRLNLKSRGSVLYVSFGTEVDLTLDEYLVLANPLEASNRSFIWVIQGGA 220
+Q L + SV+Y+SFGT E + L+ LEAS FIW ++ A
Sbjct: 262 LQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKA 311
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 91 EAGDQPH-WMKEVEGSMALMFNTCDGLEGPFINYLA-NELGKPMWGVGPLLPEQFYKSAG 148
+A D P +K+++ A M + GLE P N +A N + PL+ +
Sbjct: 186 KASDLPEGVIKDIDVPFATMLHKM-GLELPRANAVAINSFAT----IHPLIENELNSKFK 240
Query: 149 SVLD--DHEMRTNRRSSNMTEDEIVQRLNLKSRGSVLYVSFGTEVDLTLDEYLVLANPLE 206
+L+ + T +R + E ++ L+ SV+Y+SFG+ V E LA LE
Sbjct: 241 LLLNVGPFNLTTPQRKVS-DEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLE 299
Query: 207 ASNRSFIWVIQG 218
FIW +G
Sbjct: 300 ECGFPFIWSFRG 311
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 5 TADVFKIFEVPIVGFFTSGACSAAAECAMWQARIQDVKPGEAR 47
T DV + P F SGAC A+A+ +W DV+ G R
Sbjct: 195 TGDVMSLSLAPDTRLFVSGACDASAK--LW-----DVREGMCR 230
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 5 TADVFKIFEVPIVGFFTSGACSAAAECAMWQARIQDVKPGEAR 47
T DV + P F SGAC A+A+ +W DV+ G R
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAK--LW-----DVREGMCR 219
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 5 TADVFKIFEVPIVGFFTSGACSAAAECAMWQARIQDVKPGEAR 47
T DV + P F SGAC A+A+ +W DV+ G R
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAK--LW-----DVREGMCR 219
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 5 TADVFKIFEVPIVGFFTSGACSAAAECAMWQARIQDVKPGEAR 47
T DV + P F SGAC A+A+ +W DV+ G R
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAK--LW-----DVREGMCR 219
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 5 TADVFKIFEVPIVGFFTSGACSAAAECAMWQARIQDVKPGEAR 47
T DV + P F SGAC A+A+ +W DV+ G R
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAK--LW-----DVREGMCR 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,317,015
Number of Sequences: 62578
Number of extensions: 228361
Number of successful extensions: 455
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 12
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)