BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035786
(693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 115/205 (56%), Gaps = 11/205 (5%)
Query: 481 PEGH--STPPPKDPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGTT 538
P+ H P +DP + G F+ +L A+ NFS N++ +G G ++KG LA GT
Sbjct: 5 PQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTL 64
Query: 539 VVVKKVSLHSFK--KESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLA 596
V VK++ + + + E+++ S H L+ L G C+ TE+LLVY YM G +A
Sbjct: 65 VAVKRLKEERXQGGELQFQTEVEMISMAVHRNLLRLRGFCMT-PTERLLVYPYMANGSVA 123
Query: 597 SSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKF 656
S L +S LDW R +IA+G+A GL+YLH C+P ++HRDV+A++ILLD++F
Sbjct: 124 SCLRE----RPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEF 179
Query: 657 EVRLGS--LSELHAQGDSHQNVLTR 679
E +G L++L D H R
Sbjct: 180 EAVVGDFGLAKLMDYKDXHVXXAVR 204
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 9/199 (4%)
Query: 485 STPPPKDPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKV 544
P +DP + G F+ +L A+ NF N++ +G G ++KG LA G V VK++
Sbjct: 3 DVPAEEDPEVHLGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRL 62
Query: 545 SLHSFK--KESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRV 602
+ + + E+++ S H L+ L G C+ TE+LLVY YM G +AS L
Sbjct: 63 KEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT-PTERLLVYPYMANGSVASCLRE- 120
Query: 603 TDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGS 662
+S LDW R +IA+G+A GL+YLH C+P ++HRDV+A++ILLD++FE +G
Sbjct: 121 ---RPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGD 177
Query: 663 --LSELHAQGDSHQNVLTR 679
L++L D H R
Sbjct: 178 FGLAKLMDYKDXHVXXAVR 196
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 119/212 (56%), Gaps = 8/212 (3%)
Query: 95 LSSFNASGLSLPGSIPEWFGYRLP--------ALQVLDLRSCSLSGSIPGSFGNLSRLNV 146
L++ +AS L+L S + G LP LQ L L++ +G IP + N S L
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 419
Query: 147 LYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQI 206
L+LS N L+G +P++LG L KL +L L N+L GEIP + + L L L N TG+I
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 207 PSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAK 266
PSGL + +++ +++LS+N LTG IP +G L+ L L LS NS SG++P EL R+L
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 267 LVISENGLEGQLSEGLFPTLDQLQVVDLSGNK 298
L ++ N G + +F ++ ++G +
Sbjct: 540 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 127/438 (28%), Positives = 186/438 (42%), Gaps = 92/438 (21%)
Query: 43 DWPLRTEPCRSWRGVQCQNGQVIAIN---------------------------------- 68
DW PC ++ GV C++ +V +I+
Sbjct: 29 DWSSNKNPC-TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 87
Query: 69 --ISGFK---------RTRIGRLNPRFAVDSLGNLTLLSSFNASG--LSLPGSIPEWFGY 115
+SGFK +R P + SLG+ + L N S L PG + G
Sbjct: 88 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG--GL 145
Query: 116 RLPALQVLDLRSCSLSGS------IPGSFGNLSRLNVLYLSGNSLAGNVPAT-------- 161
+L +L+VLDL + S+SG+ + G L L + SGN ++G+V +
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVDVSRCVNLEFL 202
Query: 162 -------------LGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPS 208
LG+ L +LD+S N L+G+ AIS L LN++SN F G IP
Sbjct: 203 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 262
Query: 209 GLYSLSSIQFLNLSDNALTGFIPSEV-GNLDKLIELDLSKNSISGSLPLELRGLRNLAKL 267
L S+Q+L+L++N TG IP + G D L LDLS N G++P L L
Sbjct: 263 --LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 320
Query: 268 VISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLF-LRPNLRFLDLSRNNITGS 326
+S N G+L + L+V+DLS N+ G LP +L L +L LDLS NN +G
Sbjct: 321 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 380
Query: 327 -WPILSTNGNASGAVFNISNNMLYGDL--NSSSFRKFSLIDLSSNYFQGTVADDRG---- 379
P L N + + NN G + S+ + + LS NY GT+ G
Sbjct: 381 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 380 -RNVSLGRNCLQSVASQR 396
R++ L N L+ Q
Sbjct: 441 LRDLKLWLNMLEGEIPQE 458
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 116/242 (47%), Gaps = 32/242 (13%)
Query: 89 LGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLY 148
L N T L+ + S L G IP+W G RL L +L L + S SG+IP G+ L L
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 541
Query: 149 LSGNSLAGNVPATLGELKKLSNLDLSRNLLTG-------------EIPNAISLL------ 189
L+ N G +PA + + ++ N + G E A +LL
Sbjct: 542 LNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 597
Query: 190 -GNLTRL------NLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIE 242
L RL N+ S + G + S+ FL++S N L+G+IP E+G++ L
Sbjct: 598 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 657
Query: 243 LDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGA 302
L+L N ISGS+P E+ LR L L +S N L+G++ + + L L +DLS N L G
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNLSGP 716
Query: 303 LP 304
+P
Sbjct: 717 IP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 113/197 (57%), Gaps = 8/197 (4%)
Query: 95 LSSFNASGLSLPGSIPEWFGYRLP--------ALQVLDLRSCSLSGSIPGSFGNLSRLNV 146
L++ +AS L+L S + G LP LQ L L++ +G IP + N S L
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 147 LYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQI 206
L+LS N L+G +P++LG L KL +L L N+L GEIP + + L L L N TG+I
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 207 PSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAK 266
PSGL + +++ +++LS+N LTG IP +G L+ L L LS NS SG++P EL R+L
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 267 LVISENGLEGQLSEGLF 283
L ++ N G + +F
Sbjct: 543 LDLNTNLFNGTIPAAMF 559
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 127/438 (28%), Positives = 186/438 (42%), Gaps = 92/438 (21%)
Query: 43 DWPLRTEPCRSWRGVQCQNGQVIAIN---------------------------------- 68
DW PC ++ GV C++ +V +I+
Sbjct: 32 DWSSNKNPC-TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 90
Query: 69 --ISGFK---------RTRIGRLNPRFAVDSLGNLTLLSSFNASG--LSLPGSIPEWFGY 115
+SGFK +R P + SLG+ + L N S L PG + G
Sbjct: 91 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG--GL 148
Query: 116 RLPALQVLDLRSCSLSGS------IPGSFGNLSRLNVLYLSGNSLAGNVPAT-------- 161
+L +L+VLDL + S+SG+ + G L L + SGN ++G+V +
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVDVSRCVNLEFL 205
Query: 162 -------------LGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPS 208
LG+ L +LD+S N L+G+ AIS L LN++SN F G IP
Sbjct: 206 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 209 GLYSLSSIQFLNLSDNALTGFIPSEV-GNLDKLIELDLSKNSISGSLPLELRGLRNLAKL 267
L S+Q+L+L++N TG IP + G D L LDLS N G++P L L
Sbjct: 266 --LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 268 VISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLF-LRPNLRFLDLSRNNITGS 326
+S N G+L + L+V+DLS N+ G LP +L L +L LDLS NN +G
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383
Query: 327 -WPILSTNGNASGAVFNISNNMLYGDL--NSSSFRKFSLIDLSSNYFQGTVADDRG---- 379
P L N + + NN G + S+ + + LS NY GT+ G
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 380 -RNVSLGRNCLQSVASQR 396
R++ L N L+ Q
Sbjct: 444 LRDLKLWLNMLEGEIPQE 461
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 116/242 (47%), Gaps = 32/242 (13%)
Query: 89 LGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLY 148
L N T L+ + S L G IP+W G RL L +L L + S SG+IP G+ L L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 149 LSGNSLAGNVPATLGELKKLSNLDLSRNLLTG-------------EIPNAISLL------ 189
L+ N G +PA + + ++ N + G E A +LL
Sbjct: 545 LNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600
Query: 190 -GNLTRL------NLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIE 242
L RL N+ S + G + S+ FL++S N L+G+IP E+G++ L
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660
Query: 243 LDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGA 302
L+L N ISGS+P E+ LR L L +S N L+G++ + + L L +DLS N L G
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNLSGP 719
Query: 303 LP 304
+P
Sbjct: 720 IP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 138/291 (47%), Gaps = 38/291 (13%)
Query: 44 WPLRTEPC-RSWRGVQCQNGQVIAINISGFKRTRIGRLNPRFAVDSLGNLTLLSSFNASG 102
W T+ C R+W GV C T+ R+N NL L SG
Sbjct: 27 WLPTTDCCNRTWLGVLCD------------TDTQTYRVN---------NLDL------SG 59
Query: 103 LSLPGS--IPEWFGYRLPALQVLDLRSCS-LSGSIPGSFGNLSRLNVLYLSGNSLAGNVP 159
L+LP IP LP L L + + L G IP + L++L+ LY++ +++G +P
Sbjct: 60 LNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118
Query: 160 ATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSI-QF 218
L ++K L LD S N L+G +P +IS L NL + N +G IP S S +
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 219 LNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQL 278
+ +S N LTG IP NL+ L +DLS+N + G + +N K+ +++N L L
Sbjct: 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 279 SE-GLFPTLDQLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNNITGSWP 328
+ GL L+ L DL N++ G LP L L L++S NN+ G P
Sbjct: 238 GKVGLSKNLNGL---DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 12/215 (5%)
Query: 167 KLSNLDLSRNLLTGEIPNAISLLGNLTRLNL----ASNFFTGQIPSGLYSLSSIQFLNLS 222
+++NLDLS L P S L NL LN N G IP + L+ + +L ++
Sbjct: 51 RVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 223 DNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQL--SE 280
++G IP + + L+ LD S N++SG+LP + L NL + N + G + S
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 281 GLFPTLDQLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNNITGSWPILSTNGNASGAV 340
G F L + +S N+L G +P T F NL F+DLSRN + G +L + + +
Sbjct: 170 GSFSKL--FTSMTISRNRLTGKIPPT-FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 341 FNISNNMLYGDLNSSSFRK-FSLIDLSSNYFQGTV 374
+++ N L DL K + +DL +N GT+
Sbjct: 227 -HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 87 DSLGNLT-LLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLN 145
DS G+ + L +S S L G IP F L +DL L G FG+
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 146 VLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQ 205
++L+ NSLA ++ +G K L+ LDL N + G +P ++ L L LN++ N G+
Sbjct: 225 KIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 206 IPSG 209
IP G
Sbjct: 284 IPQG 287
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 136 GSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRL 195
G G LN L L N + G +P L +LK L +L++S N L GEIP GNL R
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQRF 293
Query: 196 NLAS 199
++++
Sbjct: 294 DVSA 297
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 81/151 (53%), Gaps = 9/151 (5%)
Query: 507 LLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK-KESYMMELDLFSRVS 565
L AT NF LI G G ++KG L G V +K+ + S + E + E++ S
Sbjct: 34 LEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCR 93
Query: 566 HARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGA 625
H LV L+G C E E +L+YKYM G+L L+ D S+ W RL+I IGA
Sbjct: 94 HPHLVSLIGFCDE-RNEMILIYKYMENGNLKRHLYG----SDLPTMSMSWEQRLEICIGA 148
Query: 626 AEGLSYLHHECNPPLVHRDVQASSILLDDKF 656
A GL YLH ++HRDV++ +ILLD+ F
Sbjct: 149 ARGLHYLH---TRAIIHRDVKSINILLDENF 176
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 81/151 (53%), Gaps = 9/151 (5%)
Query: 507 LLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK-KESYMMELDLFSRVS 565
L AT NF LI G G ++KG L G V +K+ + S + E + E++ S
Sbjct: 34 LEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCR 93
Query: 566 HARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGA 625
H LV L+G C E E +L+YKYM G+L L+ D S+ W RL+I IGA
Sbjct: 94 HPHLVSLIGFCDE-RNEMILIYKYMENGNLKRHLYG----SDLPTMSMSWEQRLEICIGA 148
Query: 626 AEGLSYLHHECNPPLVHRDVQASSILLDDKF 656
A GL YLH ++HRDV++ +ILLD+ F
Sbjct: 149 ARGLHYLH---TRAIIHRDVKSINILLDENF 176
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 21/188 (11%)
Query: 501 SFTYEQLLRATGNFSET------NLIKKGHSGDLFKGTLAGGTTVVVKK----VSLHSFK 550
SF++ +L T NF E N + +G G ++KG + TTV VKK V + + +
Sbjct: 14 SFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEE 72
Query: 551 -KESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDS 609
K+ + E+ + ++ H LV LLG + + + LVY YM G L L R++ L D
Sbjct: 73 LKQQFDQEIKVMAKCQHENLVELLGFSSDGD-DLCLVYVYMPNGSL---LDRLSCL--DG 126
Query: 610 LQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQ 669
L W R KIA GAA G+++LH + +HRD+++++ILLD+ F ++ A
Sbjct: 127 TPPLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARAS 183
Query: 670 GDSHQNVL 677
Q V+
Sbjct: 184 EKFAQTVM 191
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 21/188 (11%)
Query: 501 SFTYEQLLRATGNFSET------NLIKKGHSGDLFKGTLAGGTTVVVKK----VSLHSFK 550
SF++ +L T NF E N + +G G ++KG + TTV VKK V + + +
Sbjct: 14 SFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEE 72
Query: 551 -KESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDS 609
K+ + E+ + ++ H LV LLG + + + LVY YM G L L R++ L D
Sbjct: 73 LKQQFDQEIKVMAKCQHENLVELLGFSSDGD-DLCLVYVYMPNGSL---LDRLSCL--DG 126
Query: 610 LQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQ 669
L W R KIA GAA G+++LH + +HRD+++++ILLD+ F ++ A
Sbjct: 127 TPPLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARAS 183
Query: 670 GDSHQNVL 677
Q V+
Sbjct: 184 EKFAQTVM 191
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 97/188 (51%), Gaps = 21/188 (11%)
Query: 501 SFTYEQLLRATGNFSET------NLIKKGHSGDLFKGTLAGGTTVVVKK----VSLHSFK 550
SF++ +L T NF E N + +G G ++KG + TTV VKK V + + +
Sbjct: 8 SFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEE 66
Query: 551 -KESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDS 609
K+ + E+ + ++ H LV LLG + + + LVY YM G L L R++ L D
Sbjct: 67 LKQQFDQEIKVMAKCQHENLVELLGFSSDGD-DLCLVYVYMPNGSL---LDRLSCL--DG 120
Query: 610 LQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQ 669
L W R KIA GAA G+++LH + +HRD+++++ILLD+ F ++ A
Sbjct: 121 TPPLSWHMRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARAS 177
Query: 670 GDSHQNVL 677
Q V+
Sbjct: 178 EKFAQXVM 185
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 21/174 (12%)
Query: 501 SFTYEQLLRATGNFSET------NLIKKGHSGDLFKGTLAGGTTVVVKK----VSLHSFK 550
SF++ +L T NF E N +G G ++KG + TTV VKK V + + +
Sbjct: 5 SFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEE 63
Query: 551 -KESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDS 609
K+ + E+ + ++ H LV LLG + + + LVY Y G L L R++ L D
Sbjct: 64 LKQQFDQEIKVXAKCQHENLVELLGFSSDGD-DLCLVYVYXPNGSL---LDRLSCL--DG 117
Query: 610 LQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
L W R KIA GAA G+++LH + +HRD+++++ILLD+ F ++
Sbjct: 118 TPPLSWHXRCKIAQGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDF 168
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 12/138 (8%)
Query: 536 GTTVVVK---KVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVC 592
G+ V VK + H+ + ++ E+ + R+ H +V +G + +V +Y+
Sbjct: 60 GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMG-AVTQPPNLSIVTEYLSR 118
Query: 593 GDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILL 652
G L LH+ + + LD RL +A A+G++YLH+ NPP+VHRD+++ ++L+
Sbjct: 119 GSLYRLLHK-----SGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRDLKSPNLLV 172
Query: 653 DDKFEVRLGS--LSELHA 668
D K+ V++ LS L A
Sbjct: 173 DKKYTVKVCDFGLSRLKA 190
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 536 GTTVVVK---KVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVC 592
G+ V VK + H+ + ++ E+ + R+ H +V +G + +V +Y+
Sbjct: 60 GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMG-AVTQPPNLSIVTEYLSR 118
Query: 593 GDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILL 652
G L LH+ + + LD RL +A A+G++YLH+ NPP+VHR++++ ++L+
Sbjct: 119 GSLYRLLHK-----SGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNLLV 172
Query: 653 DDKFEVRL 660
D K+ V++
Sbjct: 173 DKKYTVKV 180
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 20/142 (14%)
Query: 520 IKKGHSGDLFKGTLAGGTTVV-VKKVSLHSFKKESYMME--------LDLFSRVSHARLV 570
I KG G + KG L +VV +K + L + E+ M+E + + S ++H +V
Sbjct: 27 IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
L G L H ++ V +++ CGDL HR+ D + W +L++ + A G+
Sbjct: 87 KLYG--LMHNPPRM-VMEFVPCGDL---YHRLLD----KAHPIKWSVKLRLMLDIALGIE 136
Query: 631 YLHHECNPPLVHRDVQASSILL 652
Y+ ++ NPP+VHRD+++ +I L
Sbjct: 137 YMQNQ-NPPIVHRDLRSPNIFL 157
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 20/142 (14%)
Query: 520 IKKGHSGDLFKGTLAGGTTVV-VKKVSLHSFKKESYMME--------LDLFSRVSHARLV 570
I KG G + KG L +VV +K + L + E+ M+E + + S ++H +V
Sbjct: 27 IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
L G L H ++ V +++ CGDL HR+ D + W +L++ + A G+
Sbjct: 87 KLYG--LMHNPPRM-VMEFVPCGDL---YHRLLD----KAHPIKWSVKLRLMLDIALGIE 136
Query: 631 YLHHECNPPLVHRDVQASSILL 652
Y+ ++ NPP+VHRD+++ +I L
Sbjct: 137 YMQNQ-NPPIVHRDLRSPNIFL 157
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 20/142 (14%)
Query: 520 IKKGHSGDLFKGTLAGGTTVV-VKKVSLHSFKKESYMME--------LDLFSRVSHARLV 570
I KG G + KG L +VV +K + L + E+ M+E + + S ++H +V
Sbjct: 27 IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
L G L H ++ V +++ CGDL HR+ D + W +L++ + A G+
Sbjct: 87 KLYG--LMHNPPRM-VMEFVPCGDL---YHRLLD----KAHPIKWSVKLRLMLDIALGIE 136
Query: 631 YLHHECNPPLVHRDVQASSILL 652
Y+ ++ NPP+VHRD+++ +I L
Sbjct: 137 YMQNQ-NPPIVHRDLRSPNIFL 157
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 86/189 (45%), Gaps = 6/189 (3%)
Query: 136 GSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEI-PNAISLLGNLTR 194
SF + L +L+L N+LAG A L L LDLS N + P LG+L
Sbjct: 49 ASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHT 108
Query: 195 LNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSL 254
L+L P L+++Q+L L DN L + +L L L L N I
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVP 168
Query: 255 PLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLF--LRPN 312
RGL +L +L++ +N + ++ F L +L + L N L LPA + LR +
Sbjct: 169 EHAFRGLHSLDRLLLHQNHV-ARVHPHAFRDLGRLMTLYLFANNL-SMLPAEVLVPLR-S 225
Query: 313 LRFLDLSRN 321
L++L L+ N
Sbjct: 226 LQYLRLNDN 234
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%)
Query: 117 LPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRN 176
L ALQ L L+ +L +F +L L L+L GN + L L L L +N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 177 LLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDN 224
+ P+A LG L L L +N + L L S+Q+L L+DN
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 120 LQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLT 179
L L L C L PG F L+ L LYL N+L T +L L++L L N +
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP 165
Query: 180 GEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEV 234
+A L +L RL L N P L + L L N L+ +P+EV
Sbjct: 166 SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEV 219
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 194 RLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNS-ISG 252
R+ L N + + S ++ L L NAL G + L L +LDLS N+ +
Sbjct: 35 RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRV 94
Query: 253 SLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLF 308
P RGL +L L + GL+ +L GLF L LQ + L N L ALP F
Sbjct: 95 VDPTTFRGLGHLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTF 148
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 89 LGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLY 148
LGNLT L G +P S+PE L +L L L ++ P +F +L RL LY
Sbjct: 151 LGNLTHLF---LHGNRIP-SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLY 206
Query: 149 LSGNSLAGNVPATLGELKKLSNLDLSRN 176
L N+L+ L L+ L L L+ N
Sbjct: 207 LFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 8/206 (3%)
Query: 104 SLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLG 163
++P +IP + LDL+S LS +F L++L +LYL+ N L
Sbjct: 30 AIPSNIP-------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82
Query: 164 ELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSD 223
ELK L L ++ N L L NL L L N P SL+ + +L+L
Sbjct: 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 224 NALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLF 283
N L L L EL L N + L L L + N L+ ++ EG F
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAF 201
Query: 284 PTLDQLQVVDLSGNKLDGALPATLFL 309
+L++L+++ L N D +++
Sbjct: 202 DSLEKLKMLQLQENPWDCTCNGIIYM 227
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 15/204 (7%)
Query: 115 YRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGN---SLAGNVPATLGELKKLSNL 171
+ P LQVLDL C + G++ +LS L+ L L+GN SLA + L L+KL +
Sbjct: 51 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL--V 108
Query: 172 DLSRNLLTGE-IPNAISLLGNLTRLNLASNFFTG-QIPSGLYSLSSIQFLNLSDNALTGF 229
L NL + E P I L L LN+A N ++P +L++++ L+LS N +
Sbjct: 109 ALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Query: 230 IPSEVGNLDKLIELDLSKNSISGSL----PLELRGLRNLAKLVISENGLEGQLSEGLFPT 285
+++ L ++ L+LS + + P + +R L +L + N L+ + +G+F
Sbjct: 167 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS-VPDGIFDR 224
Query: 286 LDQLQVVDLSGNKLDGALPATLFL 309
L LQ + L N D + P +L
Sbjct: 225 LTSLQKIWLHTNPWDCSCPRIDYL 248
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 71/170 (41%), Gaps = 3/170 (1%)
Query: 136 GSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNL-LTGEIPNAISLLGNLTR 194
SF L +L+L N LA A L L LDLS N L P LG L
Sbjct: 49 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 108
Query: 195 LNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSL 254
L+L P L+++Q+L L DNAL +L L L L N IS
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 168
Query: 255 PLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALP 304
RGL +L +L++ +N + + F L +L + L N L ALP
Sbjct: 169 ERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNL-SALP 216
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%)
Query: 117 LPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRN 176
L ALQ L L+ +L +F +L L L+L GN ++ L L L L +N
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
Query: 177 LLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDN 224
+ P+A LG L L L +N + L L ++Q+L L+DN
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 51/129 (39%)
Query: 120 LQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLT 179
L L L C L PG F L+ L LYL N+L T +L L++L L N ++
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 165
Query: 180 GEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDK 239
A L +L RL L N P L + L L N L+ + L
Sbjct: 166 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 225
Query: 240 LIELDLSKN 248
L L L+ N
Sbjct: 226 LQYLRLNDN 234
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 15/204 (7%)
Query: 115 YRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGN---SLAGNVPATLGELKKLSNL 171
+ P LQVLDL C + G++ +LS L+ L L+GN SLA + L L+KL +
Sbjct: 51 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL--V 108
Query: 172 DLSRNLLTGE-IPNAISLLGNLTRLNLASNFFTG-QIPSGLYSLSSIQFLNLSDNALTGF 229
+ NL + E P I L L LN+A N ++P +L++++ L+LS N +
Sbjct: 109 AVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Query: 230 IPSEVGNLDKLIELDLSKNSISGSL----PLELRGLRNLAKLVISENGLEGQLSEGLFPT 285
+++ L ++ L+LS + + P + +R L +L + N L+ + +G+F
Sbjct: 167 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS-VPDGIFDR 224
Query: 286 LDQLQVVDLSGNKLDGALPATLFL 309
L LQ + L N D + P +L
Sbjct: 225 LTSLQKIWLHTNPWDCSCPRIDYL 248
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 7/157 (4%)
Query: 121 QVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTG 180
Q ++L + ++P S NL LS N L + +L LDLSR +
Sbjct: 15 QCMELNFYKIPDNLPFSTKNLD------LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQT 68
Query: 181 EIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKL 240
A L +L+ L L N LSS+Q L + L +G+L L
Sbjct: 69 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 128
Query: 241 IELDLSKNSI-SGSLPLELRGLRNLAKLVISENGLEG 276
EL+++ N I S LP L NL L +S N ++
Sbjct: 129 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 71/170 (41%), Gaps = 3/170 (1%)
Query: 136 GSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNL-LTGEIPNAISLLGNLTR 194
SF L +L+L N LA A L L LDLS N L P LG L
Sbjct: 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109
Query: 195 LNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSL 254
L+L P L+++Q+L L DNAL +L L L L N IS
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169
Query: 255 PLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALP 304
RGL +L +L++ +N + + F L +L + L N L ALP
Sbjct: 170 ERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNL-SALP 217
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%)
Query: 117 LPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRN 176
L ALQ L L+ +L +F +L L L+L GN ++ L L L L +N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 177 LLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDN 224
+ P+A LG L L L +N + L L ++Q+L L+DN
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 51/129 (39%)
Query: 120 LQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLT 179
L L L C L PG F L+ L LYL N+L T +L L++L L N ++
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 180 GEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDK 239
A L +L RL L N P L + L L N L+ + L
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 240 LIELDLSKN 248
L L L+ N
Sbjct: 227 LQYLRLNDN 235
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 15/204 (7%)
Query: 115 YRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGN---SLAGNVPATLGELKKLSNL 171
+ P LQVLDL C + G++ +LS L+ L L+GN SLA + L L+KL +
Sbjct: 50 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL--V 107
Query: 172 DLSRNLLTGE-IPNAISLLGNLTRLNLASNFFTG-QIPSGLYSLSSIQFLNLSDNALTGF 229
+ NL + E P I L L LN+A N ++P +L++++ L+LS N +
Sbjct: 108 AVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Query: 230 IPSEVGNLDKLIELDLSKNSISGSL----PLELRGLRNLAKLVISENGLEGQLSEGLFPT 285
+++ L ++ L+LS + + P + +R L +L + N L+ + +G+F
Sbjct: 166 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS-VPDGIFDR 223
Query: 286 LDQLQVVDLSGNKLDGALPATLFL 309
L LQ + L N D + P +L
Sbjct: 224 LTSLQKIWLHTNPWDCSCPRIDYL 247
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 64/157 (40%), Gaps = 7/157 (4%)
Query: 121 QVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTG 180
Q ++L + ++P S NL LS N L + +L LDLSR +
Sbjct: 14 QCMELNFYKIPDNLPFSTKNLD------LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQT 67
Query: 181 EIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKL 240
A L +L+ L L N LSS+Q L + L +G+L L
Sbjct: 68 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 127
Query: 241 IELDLSKNSI-SGSLPLELRGLRNLAKLVISENGLEG 276
EL+++ N I S LP L NL L +S N ++
Sbjct: 128 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 19/158 (12%)
Query: 513 NFSETNLIKK---GHSGDLFKGTLAGGTTVV-VKKVSLHSFKK-ESYMMELDLFSRVSHA 567
+F + N + K HSG+L+KG G VV V KV S +K + E SH
Sbjct: 8 DFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHP 67
Query: 568 RLVPLLGQC----LEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAI 623
++P+LG C H T L+ +M G L + LH T+ D Q+ +K A+
Sbjct: 68 NVLPVLGACQSPPAPHPT---LITHWMPYGSLYNVLHEGTNFVVDQSQA------VKFAL 118
Query: 624 GAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG 661
A G+++L H P + + + S+++D+ R+
Sbjct: 119 DMARGMAFL-HTLEPLIPRHALNSRSVMIDEDMTARIS 155
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 15/204 (7%)
Query: 115 YRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGN---SLAGNVPATLGELKKLSNL 171
+ P LQVLDL C + G++ +LS L+ L L+GN SLA + L L+KL +
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL--V 106
Query: 172 DLSRNLLTGE-IPNAISLLGNLTRLNLASNFFTG-QIPSGLYSLSSIQFLNLSDNALTGF 229
+ NL + E P I L L LN+A N ++P +L++++ L+LS N +
Sbjct: 107 AVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Query: 230 IPSEVGNLDKLIELDLSKNSISGSL----PLELRGLRNLAKLVISENGLEGQLSEGLFPT 285
+++ L ++ L+LS + + P + +R L +L + N L+ + +G+F
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS-VPDGIFDR 222
Query: 286 LDQLQVVDLSGNKLDGALPATLFL 309
L LQ + L N D + P +L
Sbjct: 223 LTSLQKIWLHTNPWDCSCPRIDYL 246
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 15/204 (7%)
Query: 115 YRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGN---SLAGNVPATLGELKKLSNL 171
+ P LQVLDL C + G++ +LS L+ L L+GN SLA + L L+KL +
Sbjct: 50 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL--V 107
Query: 172 DLSRNLLTGE-IPNAISLLGNLTRLNLASNFFTG-QIPSGLYSLSSIQFLNLSDNALTGF 229
+ NL + E P I L L LN+A N ++P +L++++ L+LS N +
Sbjct: 108 AVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Query: 230 IPSEVGNLDKLIELDLSKNSISGSL----PLELRGLRNLAKLVISENGLEGQLSEGLFPT 285
+++ L ++ L+LS + + P + +R L +L + N L+ + +G+F
Sbjct: 166 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS-VPDGIFDR 223
Query: 286 LDQLQVVDLSGNKLDGALPATLFL 309
L LQ + L N D + P +L
Sbjct: 224 LTSLQKIWLHTNPWDCSCPRIDYL 247
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 51 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 108
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 109 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 161
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YL + VHRD+ A + +LD+KF V++
Sbjct: 162 KGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADF 195
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 32 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 89
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 90 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 142
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YL + VHRD+ A + +LD+KF V++
Sbjct: 143 KGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADF 176
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 52 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 109
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 110 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 162
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YL + VHRD+ A + +LD+KF V++
Sbjct: 163 KGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADF 196
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 25 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 82
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 83 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 135
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YL + VHRD+ A + +LD+KF V++
Sbjct: 136 KGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADF 169
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 33 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 90
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 91 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 143
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YL + VHRD+ A + +LD+KF V++
Sbjct: 144 KGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADF 177
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 31 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 88
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 89 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 141
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YL + VHRD+ A + +LD+KF V++
Sbjct: 142 KGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADF 175
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 32 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 89
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 90 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 142
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YL + VHRD+ A + +LD+KF V++
Sbjct: 143 KGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADF 176
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 33 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 90
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 91 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 143
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YL + VHRD+ A + +LD+KF V++
Sbjct: 144 KGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADF 177
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 30 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 87
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 88 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 140
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YL + VHRD+ A + +LD+KF V++
Sbjct: 141 KGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADF 174
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 28 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 85
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 86 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 138
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YL + VHRD+ A + +LD+KF V++
Sbjct: 139 KGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADF 172
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 115/275 (41%), Gaps = 44/275 (16%)
Query: 118 PALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNL 177
P +LDL++ ++ G F NL L+ L L N ++ P L KL L LS+N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 178 LTGEIP--------------NAISL--------LGNLTRLNLASN-FFTGQIPSGLYS-L 213
L E+P N I+ L + + L +N + I +G + +
Sbjct: 112 LK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 214 SSIQFLNLSDNALT----GFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVI 269
+ ++ ++D +T G PS L EL L N I+ L+GL NLAKL +
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPS-------LTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 270 SENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNNITG---- 325
S N + + G L+ + L+ NKL +P L ++ + L NNI+
Sbjct: 224 SFNSISA-VDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSN 281
Query: 326 --SWPILSTNGNASGAVFNISNNMLYGDLNSSSFR 358
P +T + V SN + Y ++ S+FR
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 115/275 (41%), Gaps = 44/275 (16%)
Query: 118 PALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNL 177
P +LDL++ ++ G F NL L+ L L N ++ P L KL L LS+N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 178 LTGEIP--------------NAISL--------LGNLTRLNLASN-FFTGQIPSGLYS-L 213
L E+P N I+ L + + L +N + I +G + +
Sbjct: 112 LK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 214 SSIQFLNLSDNALT----GFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVI 269
+ ++ ++D +T G PS L EL L N I+ L+GL NLAKL +
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPS-------LTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 270 SENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNNITG---- 325
S N + + G L+ + L+ NKL +P L ++ + L NNI+
Sbjct: 224 SFNSISA-VDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSN 281
Query: 326 --SWPILSTNGNASGAVFNISNNMLYGDLNSSSFR 358
P +T + V SN + Y ++ S+FR
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 172 DLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIP 231
DLS++ + + + S +L +L LA N + + L+ + LNLS N L
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 232 SEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQV 291
NLDKL LDLS N I GL NL +L + N L+ + +G+F L LQ
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQK 399
Query: 292 VDLSGNKLDGALPATLFL 309
+ L N D + P +L
Sbjct: 400 IWLHTNPWDCSCPRIDYL 417
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 214 SSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENG 273
S ++ +LS + + + S + L +L L++N I+ GL +L KL +S+N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334
Query: 274 LEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNNI 323
L G + +F LD+L+V+DLS N + + PNL+ L L N +
Sbjct: 335 L-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 31/148 (20%)
Query: 258 LRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRP--NLRF 315
RGL +L L + N QL G F L L+V+ L+ LDGA+ + F +P +L
Sbjct: 75 FRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133
Query: 316 LDLSRNNITGSWPILSTNGNASGAVFNISNNMLYGDLNSSSFRKFSLIDLSSNYFQGTVA 375
L L NNI P A F + NM R+F ++DL+ N +
Sbjct: 134 LVLRDNNIKKIQP----------ASFFL--NM----------RRFHVLDLTFNKVKSICE 171
Query: 376 DD----RGRNVSLGRNCLQSVASQRSSE 399
+D +G++ +L R L S+ Q +E
Sbjct: 172 EDLLNFQGKHFTLLR--LSSITLQDMNE 197
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 92 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 149
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 150 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 202
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ +L + VHRD+ A + +LD+KF V++
Sbjct: 203 KGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADF 236
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 33 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 90
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 91 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 143
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ +L + VHRD+ A + +LD+KF V++
Sbjct: 144 KGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADF 177
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 33 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 90
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 91 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 143
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ +L + VHRD+ A + +LD+KF V++
Sbjct: 144 KGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADF 177
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 34 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 91
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 92 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 144
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ +L + VHRD+ A + +LD+KF V++
Sbjct: 145 KGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADF 178
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 34 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 91
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 92 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 144
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ +L + VHRD+ A + +LD+KF V++
Sbjct: 145 KGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADF 178
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 38 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 95
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 96 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 148
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ +L + VHRD+ A + +LD+KF V++
Sbjct: 149 KGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADF 182
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG--GTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
+F+E +I +GH G ++ GTL G + SL+ + ++ E + SH
Sbjct: 31 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 88
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ LLG CL E L+V YM GDL + + T + +++ L + + A
Sbjct: 89 PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNET--HNPTVKDL-----IGFGLQVA 141
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ +L + VHRD+ A + +LD+KF V++
Sbjct: 142 KGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADF 175
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 537 TTVVVKKVSLHSFKKESYMMELDLFSRV-SHARLVPLLGQCLEHETEKLLVYKYMVCGDL 595
V + K + H+ +KE+ M EL + S + H +V LLG C H L++ +Y GDL
Sbjct: 71 VAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC-THGGPVLVITEYCCYGDL 129
Query: 596 ASSLHRVT--DLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLD 653
+ L R DL+ + + L+ L + A+G+++L + +HRDV A ++LL
Sbjct: 130 LNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLT 186
Query: 654 DKFEVRLGSL 663
+ ++G
Sbjct: 187 NGHVAKIGDF 196
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 537 TTVVVKKVSLHSFKKESYMMELDLFSRV-SHARLVPLLGQCLEHETEKLLVYKYMVCGDL 595
V + K + H+ +KE+ M EL + S + H +V LLG C H L++ +Y GDL
Sbjct: 79 VAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT-HGGPVLVITEYCCYGDL 137
Query: 596 ASSLHRVT--DLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLD 653
+ L R DL+ + + L+ L + A+G+++L + +HRDV A ++LL
Sbjct: 138 LNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLT 194
Query: 654 DKFEVRLGSL 663
+ ++G
Sbjct: 195 NGHVAKIGDF 204
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 11/197 (5%)
Query: 116 RLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSR 175
L L++L L + G+F L+ LN L L N L L KL L L
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 176 NLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYS-LSSIQFLNLSDNALTGFIPSEV 234
N + A + + +L RL+L I G + LS++++LNL+ L E+
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-----REI 200
Query: 235 GNLDKLI---ELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQV 291
NL LI ELDLS N +S P +GL +L KL + ++ ++ + F L L
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVE 259
Query: 292 VDLSGNKLDGALPATLF 308
++L+ N L LP LF
Sbjct: 260 INLAHNNLT-LLPHDLF 275
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 108 SIPEWFGYRLPALQVLDLRSCS-LSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELK 166
SIP + R+P+L+ LDL LS G+F LS L L L+ +L +P L L
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLI 207
Query: 167 KLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNAL 226
KL LDLS N L+ P + L +L +L + + + +L S+ +NL+ N L
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 227 T 227
T
Sbjct: 268 T 268
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 2/158 (1%)
Query: 171 LDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFI 230
L+L N + N+ L +L L L+ N L+++ L L DN LT
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 231 PSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQ 290
L KL EL L N I + +L +L + E +SEG F L L+
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188
Query: 291 VVDLSGNKLDGALPATLFLRPNLRFLDLSRNNITGSWP 328
++L+ L T ++ L LDLS N+++ P
Sbjct: 189 YLNLAMCNLREIPNLTPLIK--LDELDLSGNHLSAIRP 224
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEH 579
I G G + G V +K + + +E ++ E ++ ++SH +LV L G CLE
Sbjct: 18 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE- 76
Query: 580 ETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPP 639
+ LV+++M G L+ L L T L + + EG++YL C
Sbjct: 77 QAPICLVFEFMEHGCLSDYLRTQRGLFAAE-------TLLGMCLDVCEGMAYLEEAC--- 126
Query: 640 LVHRDVQASSILLDD 654
++HRD+ A + L+ +
Sbjct: 127 VIHRDLAARNCLVGE 141
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEH 579
I G G + G V +K + + +E ++ E ++ ++SH +LV L G CLE
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE- 73
Query: 580 ETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPP 639
+ LV+++M G L+ L L T L + + EG++YL C
Sbjct: 74 QAPICLVFEFMEHGCLSDYLRTQRGLFAAE-------TLLGMCLDVCEGMAYLEEAC--- 123
Query: 640 LVHRDVQASSILLDD 654
++HRD+ A + L+ +
Sbjct: 124 VIHRDLAARNCLVGE 138
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 92/193 (47%), Gaps = 15/193 (7%)
Query: 79 RLNPRFAVDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSCSL-SGSI--P 135
RL + A NL LL N S L S + F LPALQ L+L+ G+I
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKT 469
Query: 136 GSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRL 195
S L RL +L LS L+ LK ++++DLS N LT A+S L + L
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528
Query: 196 NLASNFFTGQIPSGLYSLSSIQFLNLSDNALTG------FIPSEVGNLDKLIELDLSKNS 249
NLASN + +PS L LS + +NL N L F+ N+ KL + ++++
Sbjct: 529 NLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLED---TEDT 585
Query: 250 ISGSLPLELRGLR 262
+ + PL LRG+R
Sbjct: 586 LCENPPL-LRGVR 597
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 31/170 (18%)
Query: 159 PATLGELKKLS--NLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSI 216
PA L ++S +++L ++ N L L+L + + ++PSGL LS++
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTL 303
Query: 217 QFLNLSDNALTGF-------IPS-------------EVG-----NLDKLIELDLSKNSIS 251
+ L LS N PS E+G NL+ L ELDLS + I
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Query: 252 GS--LPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKL 299
S L+LR L +L L +S N +E F QL+++DL+ +L
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRL 412
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEH 579
I G G + G V +K + + +E ++ E ++ ++SH +LV L G CLE
Sbjct: 13 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE- 71
Query: 580 ETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPP 639
+ LV+++M G L+ L L T L + + EG++YL C
Sbjct: 72 QAPICLVFEFMEHGCLSDYLRTQRGLFAAE-------TLLGMCLDVCEGMAYLEEAC--- 121
Query: 640 LVHRDVQASSILLDD 654
++HRD+ A + L+ +
Sbjct: 122 VIHRDLAARNCLVGE 136
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEH 579
I G G + G V +K + S ++ ++ E ++ ++SH +LV L G CLE
Sbjct: 35 IGSGQFGLVHLGYWLNKDKVAIKTIKEGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLE- 93
Query: 580 ETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPP 639
+ LV+++M G L+ L L T L + + EG++YL C
Sbjct: 94 QAPICLVFEFMEHGCLSDYLRTQRGLFAAE-------TLLGMCLDVCEGMAYLEEAC--- 143
Query: 640 LVHRDVQASSILLDD 654
++HRD+ A + L+ +
Sbjct: 144 VIHRDLAARNCLVGE 158
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 19/157 (12%)
Query: 513 NFSETNLIKK---GHSGDLFKGTLAGGTTVV-VKKVSLHSFKK-ESYMMELDLFSRVSHA 567
+F + N + K HSG+L+KG G VV V KV S +K + E SH
Sbjct: 8 DFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHP 67
Query: 568 RLVPLLGQC----LEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAI 623
++P+LG C H T L+ + G L + LH T+ D Q+ +K A+
Sbjct: 68 NVLPVLGACQSPPAPHPT---LITHWXPYGSLYNVLHEGTNFVVDQSQA------VKFAL 118
Query: 624 GAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
A G ++L H P + + + S+ +D+ R+
Sbjct: 119 DXARGXAFL-HTLEPLIPRHALNSRSVXIDEDXTARI 154
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 31/154 (20%)
Query: 115 YRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGN---SLAGNVPATLGELKKLSNL 171
+ P LQVLDL C + G++ +LS L+ L L+GN SLA + L L+KL
Sbjct: 73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL--- 129
Query: 172 DLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGF-I 230
+++ NL L NF G L +++ LN++ N + F +
Sbjct: 130 --------------VAVETNLASL---ENFPIGH-------LKTLKELNVAHNLIQSFKL 165
Query: 231 PSEVGNLDKLIELDLSKNSISGSLPLELRGLRNL 264
P NL L LDLS N I +LR L +
Sbjct: 166 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 4/163 (2%)
Query: 117 LPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGN-VPATLGELKKLSNLDLSR 175
L L LD+ + G F LS L VL ++GNS N +P EL+ L+ LDLS+
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 176 NLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVG 235
L P A + L +L LN++ N F L+S+Q L+ S N + E+
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 563
Query: 236 NL-DKLIELDLSKNSISGSLPLE--LRGLRNLAKLVISENGLE 275
+ L L+L++N + + + L+ +++ +L++ +E
Sbjct: 564 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 606
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 26/248 (10%)
Query: 86 VDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLN 145
+D LT +SSF+ +++ + F Y Q L+L +C G F L +
Sbjct: 299 IDLFNCLTNVSSFSLVSVTIERV--KDFSYNF-GWQHLELVNCKF-----GQFPTLKLKS 350
Query: 146 VLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTR----------L 195
+ L+ S G + +L L LDLSRN L+ + + S G ++ +
Sbjct: 351 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI 410
Query: 196 NLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLP 255
++SNF GL L + F + + ++ F S +L LI LD+S +
Sbjct: 411 TMSSNFL------GLEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDISHTHTRVAFN 462
Query: 256 LELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPNLRF 315
GL +L L ++ N + +F L L +DLS +L+ P +L+
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 316 LDLSRNNI 323
L++S NN
Sbjct: 523 LNMSHNNF 530
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 21/154 (13%)
Query: 513 NFSETNL---IKKGHSGDLFKGTLAGGTTVVVKKVSLH------SFKKESYMMELDLFSR 563
+F+E L I G G +++ G V K + H S E+ E LF+
Sbjct: 5 DFAELTLEEIIGIGGFGKVYRAFWIGDEVAV--KAARHDPDEDISQTIENVRQEAKLFAM 62
Query: 564 VSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAI 623
+ H ++ L G CL+ E LV ++ G L L + D L ++W A+
Sbjct: 63 LKHPNIIALRGVCLK-EPNLCLVMEFARGGPLNRVLSG-KRIPPDIL--VNW------AV 112
Query: 624 GAAEGLSYLHHECNPPLVHRDVQASSILLDDKFE 657
A G++YLH E P++HRD+++S+IL+ K E
Sbjct: 113 QIARGMNYLHDEAIVPIIHRDLKSSNILILQKVE 146
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 31/154 (20%)
Query: 115 YRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGN---SLAGNVPATLGELKKLSNL 171
+ P LQVLDL C + G++ +LS L+ L L+GN SLA + L L+KL
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL--- 105
Query: 172 DLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGF-I 230
+++ NL L NF G L +++ LN++ N + F +
Sbjct: 106 --------------VAVETNLASL---ENFPIGH-------LKTLKELNVAHNLIQSFKL 141
Query: 231 PSEVGNLDKLIELDLSKNSISGSLPLELRGLRNL 264
P NL L LDLS N I +LR L +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 117 LPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGN-VPATLGELKKLSNLDLSR 175
L L LD+ + G F LS L VL ++GNS N +P EL+ L+ LDLS+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 176 NLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVG 235
L P A + L +L LN++ N F L+S+Q L+ S N + E+
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539
Query: 236 NL-DKLIELDLSKNSISGS 253
+ L L+L++N + +
Sbjct: 540 HFPSSLAFLNLTQNDFACT 558
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 20/245 (8%)
Query: 86 VDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLN 145
+D LT +SSF+ +++ + F Y Q L+L +C G F L +
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERV--KDFSYNF-GWQHLELVNCKF-----GQFPTLKLKS 326
Query: 146 VLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLG--NLTRLNLASNFFT 203
+ L+ S G + +L L LDLSRN L+ + + S G +L L+L+ F
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FN 383
Query: 204 GQIPS-----GLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLEL 258
G I GL L + F + + ++ F S +L LI LD+S +
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 259 RGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPNLRFLDL 318
GL +L L ++ N + +F L L +DLS +L+ P +L+ L++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 319 SRNNI 323
S NN
Sbjct: 502 SHNNF 506
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 88/215 (40%), Gaps = 25/215 (11%)
Query: 102 GLSLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPAT 161
G + +P +P L VL L LS G F N +L L +S N+L T
Sbjct: 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160
Query: 162 LGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFF-TGQIPSGLYSLSS----- 215
L NL LS N LT +SL+ +L N++ N T IP + L +
Sbjct: 161 FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217
Query: 216 ----------IQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLA 265
+ L L N LT + + N L+E+DLS N + + ++ L
Sbjct: 218 NVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275
Query: 266 KLVISENGLEG-QLSEGLFPTLDQLQVVDLSGNKL 299
+L IS N L L PT L+V+DLS N L
Sbjct: 276 RLYISNNRLVALNLYGQPIPT---LKVLDLSHNHL 307
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 25/151 (16%)
Query: 115 YRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLS 174
+ P LQVLDL C + G++ +LS L+ L L+GN + LG LS+L
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS---LALGAFSGLSSLQ-- 103
Query: 175 RNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGF-IPSE 233
L+ T L NF G L +++ LN++ N + F +P
Sbjct: 104 ------------KLVAVETNLASLENFPIGH-------LKTLKELNVAHNLIQSFKLPEY 144
Query: 234 VGNLDKLIELDLSKNSISGSLPLELRGLRNL 264
NL L LDLS N I +LR L +
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 113/265 (42%), Gaps = 35/265 (13%)
Query: 86 VDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLN 145
+D LT +SSF+ +++ + F Y Q L+L +C G F L +
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERV--KDFSYNF-GWQHLELVNCKF-----GQFPTLKLKS 326
Query: 146 VLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQ 205
+ L+ S G + +L L LDLSRN L+ F G
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS----------------------FKGC 364
Query: 206 IPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLEL-RGLRNL 264
+ +S+++L+LS N + + +G L++L LD +++ + LRNL
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 265 AKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKL-DGALPATLFLRPNLRFLDLSRNNI 323
L IS + G+F L L+V+ ++GN + LP NL FLDLS+ +
Sbjct: 424 IYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 324 TGSWPILSTNGNASGAVFNISNNML 348
P + N +S V N+++N L
Sbjct: 483 EQLSPT-AFNSLSSLQVLNMASNQL 506
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 28/128 (21%)
Query: 117 LPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGN-VPATLGELKKLSNLDLSR 175
L L LD+ + G F LS L VL ++GNS N +P EL+ L+ LDLS+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 176 NLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVG 235
L +L+ P+ SLSS+Q LN++ N L +P G
Sbjct: 480 --------------CQLEQLS----------PTAFNSLSSLQVLNMASNQLKS-VPD--G 512
Query: 236 NLDKLIEL 243
D+L L
Sbjct: 513 IFDRLTSL 520
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 33/199 (16%)
Query: 117 LPALQVLDLRSCSLS--GSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLS 174
LP+L+ LDL LS G S + L L LS N + LG L++L +LD
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 404
Query: 175 RNLLTGEIPNAISL-LGNLTRLNLASNFFTGQIPSGLYS-LSSIQFLNLSDNALT-GFIP 231
+ L ++ L L NL L++ S+ T +G+++ LSS++ L ++ N+ F+P
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDI-SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 232 SEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQV 291
D EL RNL L +S+ LE QLS F +L LQV
Sbjct: 464 ------DIFTEL------------------RNLTFLDLSQCQLE-QLSPTAFNSLSSLQV 498
Query: 292 VDLSGNKLDGALPATLFLR 310
++++ N+L ++P +F R
Sbjct: 499 LNMASNQLK-SVPDGIFDR 516
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 77 IGRLNPRFAVDSLGN-LTLLSSFNASGLSLPGS-IPEWFGYRLPALQVLDLRSCSLSGSI 134
I + R A + + N L+ L +G S + +P+ F L L LDL C L
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLS 486
Query: 135 PGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRN 176
P +F +LS L VL ++ N L L L + L N
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 539 VVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASS 598
V +K++ S +K ++++EL SRV+H +V L G CL LV +Y G L +
Sbjct: 35 VAIKQIESESERK-AFIVELRQLSRVNHPNIVKLYGACL---NPVCLVMEYAEGGSLYNV 90
Query: 599 LHRVTDLE-DDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILL 652
LH L + ++ W + ++G++YLH L+HRD++ ++LL
Sbjct: 91 LHGAEPLPYYTAAHAMSW------CLQCSQGVAYLHSMQPKALIHRDLKPPNLLL 139
>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|B Chain B, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|C Chain C, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|D Chain D, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|E Chain E, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|F Chain F, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|G Chain G, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|H Chain H, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|I Chain I, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|J Chain J, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|K Chain K, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|L Chain L, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|M Chain M, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|N Chain N, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|O Chain O, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|P Chain P, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|Q Chain Q, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|R Chain R, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|S Chain S, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|T Chain T, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|U Chain U, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|V Chain V, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|W Chain W, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
pdb|3MY0|X Chain X, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound
To Ldn- 193189
Length = 305
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 82/169 (48%), Gaps = 24/169 (14%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRV--SHARLVPLLGQCL 577
+ KG G++++G L G +V VK S S ++S+ E ++++ V H ++ + +
Sbjct: 16 VGKGRYGEVWRG-LWHGESVAVKIFS--SRDEQSWFRETEIYNTVLLRHDNILGFIASDM 72
Query: 578 EHE---TEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHH 634
T+ L+ Y G L L R Q+L+ L++A+ AA GL++LH
Sbjct: 73 TSRNSSTQLWLITHYHEHGSLYDFLQR---------QTLEPHLALRLAVSAACGLAHLHV 123
Query: 635 EC-----NPPLVHRDVQASSILLDDKFEVRLGS--LSELHAQGDSHQNV 676
E P + HRD ++ ++L+ + + L+ +H+QG + ++
Sbjct: 124 EIFGTQGKPAIAHRDFKSRNVLVKSNLQCCIADLGLAVMHSQGSDYLDI 172
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 539 VVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASS 598
V +K++ S +K ++++EL SRV+H +V L G CL LV +Y G L +
Sbjct: 34 VAIKQIESESERK-AFIVELRQLSRVNHPNIVKLYGACL---NPVCLVMEYAEGGSLYNV 89
Query: 599 LHRVTDLE-DDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILL 652
LH L + ++ W + ++G++YLH L+HRD++ ++LL
Sbjct: 90 LHGAEPLPYYTAAHAMSW------CLQCSQGVAYLHSMQPKALIHRDLKPPNLLL 138
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVS 565
QL++ GN G G+++ GT G T V +K + + ES++ E + ++
Sbjct: 12 QLIKRLGN---------GQFGEVWMGTWNGNTKVAIKTLKPGTMSPESFLEEAQIMKKLK 62
Query: 566 HARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGA 625
H +LV L E +V +YM G L + L+D ++L + +A
Sbjct: 63 HDKLVQLYAVVSEEPI--YIVTEYMNKGSL------LDFLKDGEGRALKLPNLVDMAAQV 114
Query: 626 AEGLSYLHHECNPPLVHRDVQASSILL 652
A G++Y+ +HRD+++++IL+
Sbjct: 115 AAGMAYIERMN---YIHRDLRSANILV 138
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 117/273 (42%), Gaps = 45/273 (16%)
Query: 115 YRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLS 174
Y L LQVL+L L +F L ++ + L N +A T L+KL LDL
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370
Query: 175 RNLLTG-----EIPNAISLLGN----LTRLNLASNFF--------TGQIPSGLYSLSSIQ 217
N LT IP+ I L GN L ++NL +N I L + +Q
Sbjct: 371 DNALTTIHFIPSIPD-IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ 429
Query: 218 FLNLSDNALTGF----IPSEVGNLDKLIELDLSKNSISGSLPLEL-----RGLRNLAKLV 268
L L+ N + PSE +L++L L +N + + EL GL +L L
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLF---LGENMLQLAWETELCWDVFEGLSHLQVLY 486
Query: 269 ISENGLEGQLSEGLFPTLDQLQVVDLSGNKL----DGALPATLFLRPNLRFLDLSRNNIT 324
++ N L L G+F L L+ + L+ N+L LPA NL LD+SRN +
Sbjct: 487 LNHNYLNS-LPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA------NLEILDISRNQLL 539
Query: 325 GSWPILSTNGNASGAVFNISNNMLYGDLNSSSF 357
P + S +V +I++N + S+F
Sbjct: 540 APNP----DVFVSLSVLDITHNKFICECELSTF 568
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
Query: 170 NLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGF 229
+LDLS + L +L LNLA N Y L ++Q LNLS N L
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 230 IPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQL 289
S L K+ +DL KN I+ + L L L + +N L + P++
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT---TIHFIPSIPD- 385
Query: 290 QVVDLSGNKL 299
+ LSGNKL
Sbjct: 386 --IFLSGNKL 393
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 48/253 (18%)
Query: 117 LPALQVLDLRSCSLSGSIPGSFGNLSRLNV--LYLSGNSLAGNVPATLGELKKLSNLDLS 174
LP L++LDL S + P +F L L LY G S A LK L+ LDLS
Sbjct: 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131
Query: 175 RNLLTG-EIPNAISLLGNLTRLNLASNFFTGQIPSGLYSL--SSIQFLNLSDNALTGFIP 231
+N + + + L +L ++ +SN L L ++ F +L+ N+L +
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191
Query: 232 SEVGNL-----DKLIE-LDLS------------KNSISGSLPLEL----------RGLRN 263
+ G + ++E LD+S N+IS S L G N
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251
Query: 264 L--------AKLVIS-------ENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLF 308
+ A L S +G L+ +F TL L+V++L+ NK++ +
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311
Query: 309 LRPNLRFLDLSRN 321
NL+ L+LS N
Sbjct: 312 GLDNLQVLNLSYN 324
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 80/181 (44%), Gaps = 13/181 (7%)
Query: 484 HSTPPPKDPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGT-TVVVK 542
H P ++ V GV ++ ++ R + + + + G G++++G + TV VK
Sbjct: 191 HYPAPKRNKPTVYGVSPNYDKWEMERT--DITMKHKLGGGQYGEVYEGVWKKYSLTVAVK 248
Query: 543 KVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRV 602
+ + + E ++ E + + H LV LLG C E ++ ++M G+L L
Sbjct: 249 TLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLREC 307
Query: 603 TDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGS 662
+ Q ++ + L +A + + YL + +HR++ A + L+ + V++
Sbjct: 308 ------NRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVAD 358
Query: 663 L 663
Sbjct: 359 F 359
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 13/181 (7%)
Query: 484 HSTPPPKDPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGT-TVVVK 542
H P ++ V GV ++ ++ R + + + + G G++++G + TV VK
Sbjct: 233 HYPAPKRNKPTVYGVSPNYDKWEMERT--DITMKHKLGGGQYGEVYEGVWKKYSLTVAVK 290
Query: 543 KVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRV 602
+ + + E ++ E + + H LV LLG C E ++ ++M G+L +
Sbjct: 291 TLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-EPPFYIITEFMTYGNL------L 343
Query: 603 TDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGS 662
L + + Q ++ + L +A + + YL + +HR++ A + L+ + V++
Sbjct: 344 DYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVAD 400
Query: 663 L 663
Sbjct: 401 F 401
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 88/215 (40%), Gaps = 25/215 (11%)
Query: 102 GLSLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPAT 161
G + +P +P L VL L LS G F N +L L +S N+L T
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166
Query: 162 LGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFF-TGQIPSGLYSLSS----- 215
L NL LS N LT +SL+ +L N++ N T IP + L +
Sbjct: 167 FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 223
Query: 216 ----------IQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLA 265
+ L L N LT + + N L+E+DLS N + + ++ L
Sbjct: 224 NVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281
Query: 266 KLVISENGLEG-QLSEGLFPTLDQLQVVDLSGNKL 299
+L IS N L L PT L+V+DLS N L
Sbjct: 282 RLYISNNRLVALNLYGQPIPT---LKVLDLSHNHL 313
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEH 579
I G G + G V +K + + +E ++ E ++ ++SH +LV L G CLE
Sbjct: 16 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE- 74
Query: 580 ETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPP 639
+ LV ++M G L+ L L T L + + EG++YL C
Sbjct: 75 QAPICLVTEFMEHGCLSDYLRTQRGLFAAE-------TLLGMCLDVCEGMAYLEEAC--- 124
Query: 640 LVHRDVQASSILLDD 654
++HRD+ A + L+ +
Sbjct: 125 VIHRDLAARNCLVGE 139
>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
Length = 330
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 24/198 (12%)
Query: 491 DPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK 550
D + SG G + + + KG G++++G+ G V VK S S
Sbjct: 16 DHSCTSGSGSGLPFLVQRTVARQITLLECVGKGRYGEVWRGSWQG-ENVAVKIFS--SRD 72
Query: 551 KESYMMELDLFSRV--SHARLVPLLGQCL--EHETEKL-LVYKYMVCGDLASSLHRVTDL 605
++S+ E +L++ V H ++ + + H + +L L+ Y G L L
Sbjct: 73 EKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQ----- 127
Query: 606 EDDSLQSLDWITRLKIAIGAAEGLSYLHHEC-----NPPLVHRDVQASSILLDDKFEVRL 660
L +LD ++ L+I + A GL++LH E P + HRD+++ +IL+ + +
Sbjct: 128 ----LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCI 183
Query: 661 GS--LSELHAQGDSHQNV 676
L+ +H+Q + +V
Sbjct: 184 ADLGLAVMHSQSTNQLDV 201
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 14/139 (10%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK---KESYMMELDLFSRVSHARLVPLLGQC 576
I +G+ G++F G L T+V K + K ++ E + + SH +V L+G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 577 LEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHEC 636
T+K +Y M +L +T L + + L T L++ AA G+ YL +C
Sbjct: 182 ----TQKQPIYIVM---ELVQGGDFLTFLRTEGAR-LRVKTLLQMVGDAAAGMEYLESKC 233
Query: 637 NPPLVHRDVQASSILLDDK 655
+HRD+ A + L+ +K
Sbjct: 234 ---CIHRDLAARNCLVTEK 249
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 88/212 (41%), Gaps = 34/212 (16%)
Query: 104 SLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLG 163
S+P IP + LDL+S L+ +F L++L L L N L
Sbjct: 28 SVPSGIP-------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80
Query: 164 ELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYS-LSSIQFLNLS 222
+L +L L L+ N L L L +L L N +PSG++ L+ ++ L L+
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLN 139
Query: 223 DNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGL 282
N L IP+ G DKL NL L +S N L+ + G
Sbjct: 140 TNQLQS-IPA--GAFDKLT---------------------NLQTLSLSTNQLQS-VPHGA 174
Query: 283 FPTLDQLQVVDLSGNKLDGALPATLFLRPNLR 314
F L +LQ + L GN+ D + TL+L +R
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCETLYLSQWIR 206
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 182 IPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLI 241
+P+ I + +L+L S + L+ + +LNL N L +L +L
Sbjct: 29 VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 242 ELDLSKNSISGSLPLEL-RGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLD 300
L L+ N ++ SLPL + L L KL + N L+ L G+F L +L+ + L+ N+L
Sbjct: 87 TLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ 144
Query: 301 GALPATLFLR-PNLRFLDLSRNNI 323
++PA F + NL+ L LS N +
Sbjct: 145 -SIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 14/139 (10%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK---KESYMMELDLFSRVSHARLVPLLGQC 576
I +G+ G++F G L T+V K + K ++ E + + SH +V L+G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 577 LEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHEC 636
T+K +Y M +L +T L + + L T L++ AA G+ YL +C
Sbjct: 182 ----TQKQPIYIVM---ELVQGGDFLTFLRTEGAR-LRVKTLLQMVGDAAAGMEYLESKC 233
Query: 637 NPPLVHRDVQASSILLDDK 655
+HRD+ A + L+ +K
Sbjct: 234 ---CIHRDLAARNCLVTEK 249
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 79/181 (43%), Gaps = 13/181 (7%)
Query: 484 HSTPPPKDPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGT-TVVVK 542
H P ++ + GV ++ ++ R + + + + G G++++G + TV VK
Sbjct: 194 HYPAPKRNKPTIYGVSPNYDKWEMERT--DITMKHKLGGGQYGEVYEGVWKKYSLTVAVK 251
Query: 543 KVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRV 602
+ + + E ++ E + + H LV LLG C E ++ ++M G+L L
Sbjct: 252 TLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLREC 310
Query: 603 TDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGS 662
+ Q + + L +A + + YL + +HR++ A + L+ + V++
Sbjct: 311 ------NRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVAD 361
Query: 663 L 663
Sbjct: 362 F 362
>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3MTF|B Chain B, Crystal Structure Of The Acvr1 Kinase In Complex With A 2-
Aminopyridine Inhibitor
pdb|3OOM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00507
pdb|3Q4U|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|B Chain B, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|C Chain C, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
pdb|3Q4U|D Chain D, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With Ldn- 193189
Length = 301
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 24/169 (14%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRV--SHARLVPLLGQCL 577
+ KG G++++G+ G V VK S S ++S+ E +L++ V H ++ + +
Sbjct: 16 VGKGRYGEVWRGSWQG-ENVAVKIFS--SRDEKSWFRETELYNTVMLRHENILGFIASDM 72
Query: 578 --EHETEKL-LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHH 634
H + +L L+ Y G L L L +LD ++ L+I + A GL++LH
Sbjct: 73 TSRHSSTQLWLITHYHEMGSLYDYLQ---------LTTLDTVSCLRIVLSIASGLAHLHI 123
Query: 635 EC-----NPPLVHRDVQASSILLDDKFEVRLGS--LSELHAQGDSHQNV 676
E P + HRD+++ +IL+ + + L+ +H+Q + +V
Sbjct: 124 EIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDV 172
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 539 VVVK--KVSLHSFKKESYMMELDLFSRV-SHARLVPLLGQCLEHETEKLLVYKYMVCGDL 595
V VK K + H+ +KE+ M EL + S + H +V LLG C H L++ +Y GDL
Sbjct: 79 VAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC-THGGPVLVITEYCCYGDL 137
Query: 596 ASSLHRVTD-LEDD---SLQSLDWITR--LKIAIGAAEGLSYLHHECNPPLVHRDVQASS 649
+ L R + LE D ++ + TR L + A+G+++L + +HRDV A +
Sbjct: 138 LNFLRRKSRVLETDPAFAIANSTLSTRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARN 194
Query: 650 ILLDDKFEVRLGSL 663
+LL + ++G
Sbjct: 195 VLLTNGHVAKIGDF 208
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 539 VVVK--KVSLHSFKKESYMMELDLFSRV-SHARLVPLLGQCLEHETEKLLVYKYMVCGDL 595
V VK K + H+ +KE+ M EL + S + H +V LLG C H L++ +Y GDL
Sbjct: 79 VAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC-THGGPVLVITEYCCYGDL 137
Query: 596 ASSLHRVTD-LEDD---SLQSLDWITR--LKIAIGAAEGLSYLHHECNPPLVHRDVQASS 649
+ L R + LE D ++ + TR L + A+G+++L + +HRDV A +
Sbjct: 138 LNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARN 194
Query: 650 ILLDDKFEVRLGSL 663
+LL + ++G
Sbjct: 195 VLLTNGHVAKIGDF 208
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 24/152 (15%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSL---HSFKKESYMMELDLFSRVSHARL 569
N LI +G G ++KG+L V VK S +F E + + L + AR
Sbjct: 14 NLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARF 72
Query: 570 VPLLGQ---CLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
+ +G + E LLV +Y G L L SL + DW++ ++A
Sbjct: 73 I--VGDERVTADGRMEYLLVMEYYPNGSLXKYL---------SLHTSDWVSSCRLAHSVT 121
Query: 627 EGLSYLHHEC------NPPLVHRDVQASSILL 652
GL+YLH E P + HRD+ + ++L+
Sbjct: 122 RGLAYLHTELPRGDHYKPAISHRDLNSRNVLV 153
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEH 579
I G G + G V +K + + +E ++ E ++ ++SH +LV L G CLE
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE- 73
Query: 580 ETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPP 639
+ LV+++M G L+ L L T L + + EG++YL
Sbjct: 74 QAPICLVFEFMEHGCLSDYLRTQRGLFAAE-------TLLGMCLDVCEGMAYLE---EAS 123
Query: 640 LVHRDVQASSILLDD 654
++HRD+ A + L+ +
Sbjct: 124 VIHRDLAARNCLVGE 138
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 3/184 (1%)
Query: 117 LPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSR- 175
L +L+ L L C+L+ + +L L VL L ++ + L +L L++S
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 176 NLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVG 235
L PN + L NLT L++ T + L ++FLNLS N ++ S +
Sbjct: 211 PYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269
Query: 236 NLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLS 295
L +L E+ L ++ P RGL L L +S N L L E +F ++ L+ + L
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILD 328
Query: 296 GNKL 299
N L
Sbjct: 329 SNPL 332
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 82/218 (37%), Gaps = 21/218 (9%)
Query: 117 LPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRN 176
P L+ L+L +S PG+F NL L L L N L L L+ LD+S N
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114
Query: 177 LLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGN 236
+ + L NL L + N L+S++ L L LT + +
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Query: 237 LDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSG 296
L LI L L +I+ + L L L IS +P LD + L G
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH-----------WPYLDTMTPNCLYG 223
Query: 297 NKLDGA------LPATLFLRPN----LRFLDLSRNNIT 324
L L A +L LRFL+LS N I+
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261
>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex
With The Imidazo[1,2-B]pyridazine Inhibitor K00135
Length = 301
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 24/169 (14%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRV--SHARLVPLLGQCL 577
+ KG G++++G+ G V VK S S ++S+ E +L++ V H ++ + +
Sbjct: 16 VGKGRYGEVWRGSWQG-ENVAVKIFS--SRDEKSWFRETELYNTVMLRHENILGFIASDM 72
Query: 578 --EHETEKL-LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHH 634
H + +L L+ Y G L L L +LD ++ L+I + A GL++LH
Sbjct: 73 TSRHSSTQLWLITHYHEMGSLYDYLQ---------LTTLDTVSCLRIVLSIASGLAHLHI 123
Query: 635 EC-----NPPLVHRDVQASSILLDDKFEVRLGS--LSELHAQGDSHQNV 676
E P + HRD+++ +IL+ + + L+ +H+Q + +V
Sbjct: 124 EIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDV 172
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 4/163 (2%)
Query: 117 LPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGN-VPATLGELKKLSNLDLSR 175
L L LD+ + G F LS L VL ++GNS N +P EL+ L+ LDLS+
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 176 NLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVG 235
L P A + L +L LN++ N F L+S+Q L+ S N + E+
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244
Query: 236 NL-DKLIELDLSKNSISGSLPLE--LRGLRNLAKLVISENGLE 275
+ L L+L++N + + + L+ +++ +L++ +E
Sbjct: 245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 287
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 93/228 (40%), Gaps = 34/228 (14%)
Query: 99 NASGL-SLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGN 157
N+ GL S+P IP + L+L S L G F L++L L LS N L+
Sbjct: 15 NSKGLTSVPTGIPS-------SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 158 VPATLGEL--KKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSS 215
+ + L LDLS N G +T ++SNF GL L
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFN-------------GVIT---MSSNFL------GLEQLEH 105
Query: 216 IQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLE 275
+ F + + ++ F S +L LI LD+S + GL +L L ++ N +
Sbjct: 106 LDFQHSNLKQMSEF--SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163
Query: 276 GQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNNI 323
+F L L +DLS +L+ P +L+ L++S NN
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 277 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 336
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L T Q +D ++ + E ++Y V
Sbjct: 337 --YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 385
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 386 HRDLRAANILVGENLVCKVADF 407
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 75 TRIGRLN------PRFAVDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSC 128
TR+ +LN + VD G L +L + + S L S+P G LPAL VLD+
Sbjct: 55 TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL-QSLP-LLGQTLPALTVLDVSFN 110
Query: 129 SLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISL 188
L+ G+ L L LYL GN L P L KL L L+ N LT ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 189 LGNLTRLNLASN-FFTGQIPSGLYSLSSIQFLNLSDN 224
L NL L L N +T IP G + + F L N
Sbjct: 171 LENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 193 TRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISG 252
T L+L+ N + L + + LNL LT G L L LDLS N +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 253 SLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPN 312
SLPL + L L L +S N L L G L +LQ + L GN+L P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 313 LRFLDLSRNNIT 324
L L L+ N +T
Sbjct: 150 LEKLSLANNQLT 161
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 20/143 (13%)
Query: 537 TTVVVKKVSLHSFKKESYMMELDLFSRV-SHARLVPLLGQCLEHETEKLLVYKYMVCGDL 595
V + K + H+ +KE+ M EL + S + H +V LLG C H L++ +Y GDL
Sbjct: 64 VAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC-THGGPVLVITEYCCYGDL 122
Query: 596 ASSLHRVTD---------------LEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPL 640
+ L R + L+ + + L+ L + A+G+++L +
Sbjct: 123 LNFLRRKAEAMLGPSLAPGQDPEGLDKEDGRPLELRDLLHFSSQVAQGMAFL---ASKNC 179
Query: 641 VHRDVQASSILLDDKFEVRLGSL 663
+HRDV A ++LL + ++G
Sbjct: 180 IHRDVAARNVLLTNGHVAKIGDF 202
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 87/212 (41%), Gaps = 34/212 (16%)
Query: 104 SLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLG 163
S+P IP + LDL+S L+ +F L++L L L N L
Sbjct: 28 SVPSGIP-------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80
Query: 164 ELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYS-LSSIQFLNLS 222
+L +L L L+ N L L L +L L N +PSG++ L+ ++ L L+
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLN 139
Query: 223 DNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGL 282
N L IP+ G DKL NL L +S N L+ + G
Sbjct: 140 TNQLQS-IPA--GAFDKLT---------------------NLQTLSLSTNQLQS-VPHGA 174
Query: 283 FPTLDQLQVVDLSGNKLDGALPATLFLRPNLR 314
F L +LQ + L GN+ D + L+L +R
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCEILYLSQWIR 206
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 182 IPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLI 241
+P+ I + +L+L S + L+ + +LNL N L +L +L
Sbjct: 29 VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 242 ELDLSKNSISGSLPLEL-RGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLD 300
L L+ N ++ SLPL + L L KL + N L+ L G+F L +L+ + L+ N+L
Sbjct: 87 TLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ 144
Query: 301 GALPATLFLR-PNLRFLDLSRNNI 323
++PA F + NL+ L LS N +
Sbjct: 145 -SIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 18 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 77
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L T Q +D ++ + E ++Y V
Sbjct: 78 --XIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 126
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 127 HRDLRAANILVGENLVCKVADF 148
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 75 TRIGRLN------PRFAVDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSC 128
TR+ +LN + VD G L +L + + S L S+P G LPAL VLD+
Sbjct: 55 TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL-QSLP-LLGQTLPALTVLDVSFN 110
Query: 129 SLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISL 188
L+ G+ L L LYL GN L P L KL L L+ N LT ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 189 LGNLTRLNLASN-FFTGQIPSGLYSLSSIQFLNLSDN 224
L NL L L N +T IP G + + F L N
Sbjct: 171 LENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 193 TRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISG 252
T L+L+ N + L + + LNL LT G L L LDLS N +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 253 SLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPN 312
SLPL + L L L +S N L L G L +LQ + L GN+L P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 313 LRFLDLSRNNIT 324
L L L+ N +T
Sbjct: 150 LEKLSLANNQLT 161
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 21 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 80
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L T Q +D ++ + E ++Y V
Sbjct: 81 --YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 129
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 130 HRDLRAANILVGENLVCKVADF 151
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 194 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 253
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L T Q +D ++ + E ++Y V
Sbjct: 254 --YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 302
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 303 HRDLRAANILVGENLVCKVADF 324
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 194 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 253
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L T Q +D ++ + E ++Y V
Sbjct: 254 --YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 302
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 303 HRDLRAANILVGENLVCKVADF 324
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%)
Query: 162 LGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNL 221
G L L L+L RN LTG PNA ++ L L N L ++ LNL
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 222 SDNALTGFIPSEVGNLDKLIELDLSKN 248
DN ++ +P +L+ L L+L+ N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 66 AINISGFKRTRIGRLNPRFAVDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDL 125
++ +G I R P + L N L ++ GL FG RLP L L+L
Sbjct: 12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGL---------FG-RLPHLVKLEL 61
Query: 126 RSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNA 185
+ L+G P +F S + L L N + L +L L+L N ++ +P +
Sbjct: 62 KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Query: 186 ISLLGNLTRLNLASNFF 202
L +LT LNLASN F
Sbjct: 122 FEHLNSLTSLNLASNPF 138
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 499 GDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMME 557
G S Y++ + + + + G G++++G + TV VK + + + E ++ E
Sbjct: 1 GPSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKE 60
Query: 558 LDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWIT 617
+ + H LV LLG C E ++ ++M G+L L + Q ++ +
Sbjct: 61 AAVMKEIKHPNLVQLLGVCT-REPPFYIIIEFMTYGNLLDYLREC------NRQEVNAVV 113
Query: 618 RLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
L +A + + YL + +HRD+ A + L+ + V++
Sbjct: 114 LLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADF 156
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 75 TRIGRLN------PRFAVDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSC 128
TR+ +LN + VD G L +L + + S L S+P G LPAL VLD+
Sbjct: 55 TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL-QSLP-LLGQTLPALTVLDVSFN 110
Query: 129 SLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISL 188
L+ G+ L L LYL GN L P L KL L L+ N LT ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 189 LGNLTRLNLASN-FFTGQIPSGLYSLSSIQFLNLSDN 224
L NL L L N +T IP G + + F L N
Sbjct: 171 LENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 193 TRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISG 252
T L+L+ N + L + + LNL LT G L L LDLS N +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 253 SLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPN 312
SLPL + L L L +S N L L G L +LQ + L GN+L P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 313 LRFLDLSRNNIT 324
L L L+ N +T
Sbjct: 150 LEKLSLANNQLT 161
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 75 TRIGRLN------PRFAVDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSC 128
TR+ +LN + VD G L +L + + S L S+P G LPAL VLD+
Sbjct: 55 TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL-QSLP-LLGQTLPALTVLDVSFN 110
Query: 129 SLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISL 188
L+ G+ L L LYL GN L P L KL L L+ N LT ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNG 170
Query: 189 LGNLTRLNLASN-FFTGQIPSGLYSLSSIQFLNLSDN 224
L NL L L N +T IP G + + F L N
Sbjct: 171 LENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 193 TRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISG 252
T L+L+ N + L + + LNL LT G L L LDLS N +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 253 SLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPN 312
SLPL + L L L +S N L L G L +LQ + L GN+L P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 313 LRFLDLSRNNIT 324
L L L+ N +T
Sbjct: 150 LEKLSLANNQLT 161
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 25 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 83
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q ++ + L +A + + YL + +
Sbjct: 84 PFYIITEFMTYGNLLDYLREC------NRQEVNAVVLLYMATQISSAMEYLEKK---NFI 134
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 135 HRDLAARNCLVGENHLVKVADF 156
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 29 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 87
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q ++ + L +A + + YL + +
Sbjct: 88 PFYIIIEFMTYGNLLDYLREC------NRQEVNAVVLLYMATQISSAMEYLEKK---NFI 138
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 139 HRDLAARNCLVGENHLVKVADF 160
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 75 TRIGRLN------PRFAVDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSC 128
TR+ +LN + VD G L +L + + S L S+P G LPAL VLD+
Sbjct: 55 TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL-QSLP-LLGQTLPALTVLDVSFN 110
Query: 129 SLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISL 188
L+ G+ L L LYL GN L P L KL L L+ N LT ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNG 170
Query: 189 LGNLTRLNLASN-FFTGQIPSGLYSLSSIQFLNLSDN 224
L NL L L N +T IP G + + F L N
Sbjct: 171 LENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 193 TRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISG 252
T L+L+ N + L + + LNL LT G L L LDLS N +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 253 SLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPN 312
SLPL + L L L +S N L L G L +LQ + L GN+L P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 313 LRFLDLSRNNIT 324
L L L+ N++T
Sbjct: 150 LEKLSLANNDLT 161
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 75 TRIGRLN------PRFAVDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSC 128
TR+ +LN + VD G L +L + + S L S+P G LPAL VLD+
Sbjct: 55 TRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQL-QSLP-LLGQTLPALTVLDVSFN 110
Query: 129 SLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISL 188
L+ G+ L L LYL GN L P L KL L L+ N LT ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 189 LGNLTRLNLASN-FFTGQIPSGLYSLSSIQFLNLSDN 224
L NL L L N +T IP G + + F L N
Sbjct: 171 LENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 193 TRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISG 252
T L+L+ N + L + + LNL LT G L L LDLS N +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 253 SLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPN 312
SLPL + L L L +S N L L G L +LQ + L GN+L P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 313 LRFLDLSRNNIT 324
L L L+ NN+T
Sbjct: 150 LEKLSLANNNLT 161
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 29 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 87
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q ++ + L +A + + YL + +
Sbjct: 88 PFYIITEFMTYGNLLDYLREC------NRQEVNAVVLLYMATQISSAMEYLEKK---NFI 138
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 139 HRDLAARNCLVGENHLVKVADF 160
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 194 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 253
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L T Q +D ++ + E ++Y V
Sbjct: 254 --YIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 302
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 303 HRDLRAANILVGENLVCKVADF 324
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 29 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 87
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q ++ + L +A + + YL + +
Sbjct: 88 PFYIITEFMTYGNLLDYLREC------NRQEVNAVVLLYMATQISSAMEYLEKK---NFI 138
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 139 HRDLAARNCLVGENHLVKVADF 160
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 75 TRIGRLN------PRFAVDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSC 128
TR+ +LN + VD G L +L + + S L S+P G LPAL VLD+
Sbjct: 55 TRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQL-QSLP-LLGQTLPALTVLDVSFN 110
Query: 129 SLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISL 188
L+ G+ L L LYL GN L P L KL L L+ N LT ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 189 LGNLTRLNLASN-FFTGQIPSGLYSLSSIQFLNLSDN 224
L NL L L N +T IP G + + F L N
Sbjct: 171 LENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 193 TRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISG 252
T L+L+ N + L + + LNL LT G L L LDLS N +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 253 SLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPN 312
SLPL + L L L +S N L L G L +LQ + L GN+L P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 313 LRFLDLSRNNIT 324
L L L+ NN+T
Sbjct: 150 LEKLSLANNNLT 161
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 28 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 86
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q ++ + L +A + + YL + +
Sbjct: 87 PFYIITEFMTYGNLLDYLREC------NRQEVNAVVLLYMATQISSAMEYLEKK---NFI 137
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 138 HRDLAARNCLVGENHLVKVADF 159
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 25 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 84
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L T Q +D ++ + E ++Y V
Sbjct: 85 --YIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNY---------V 133
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 134 HRDLRAANILVGENLVCKVADF 155
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 29 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 87
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q ++ + L +A + + YL + +
Sbjct: 88 PFYIITEFMTYGNLLDYLREC------NRQEVNAVVLLYMATQISSAMEYLEKK---NFI 138
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 139 HRDLAARNCLVGENHLVKVADF 160
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 26 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 84
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q ++ + L +A + + YL + +
Sbjct: 85 PFYIITEFMTYGNLLDYLREC------NRQEVNAVVLLYMATQISSAMEYLEKK---NFI 135
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 136 HRDLAARNCLVGENHLVKVADF 157
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 25 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 84
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L T Q +D ++ + E ++Y V
Sbjct: 85 --YIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNY---------V 133
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 134 HRDLRAANILVGENLVCKVADF 155
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 37 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 95
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q ++ + L +A + + YL + +
Sbjct: 96 PFYIITEFMTYGNLLDYLREC------NRQEVNAVVLLYMATQISSAMEYLEKK---NFI 146
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 147 HRDLAARNCLVGENHLVKVADF 168
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 24 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 82
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q ++ + L +A + + YL + +
Sbjct: 83 PFYIITEFMTYGNLLDYLREC------NRQEVNAVVLLYMATQISSAMEYLEKK---NFI 133
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 134 HRDLAARNCLVGENHLVKVADF 155
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 75 TRIGRLN------PRFAVDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSC 128
TR+ +LN + VD G L +L + + S L S+P G LPAL VLD+
Sbjct: 55 TRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQL-QSLP-LLGQTLPALTVLDVSFN 110
Query: 129 SLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISL 188
L+ G+ L L LYL GN L P L KL L L+ N LT ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 189 LGNLTRLNLASN-FFTGQIPSGLYSLSSIQFLNLSDN 224
L NL L L N +T IP G + + F L N
Sbjct: 171 LENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 193 TRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISG 252
T L+L+ N + L + + LNL LT G L L LDLS N +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 253 SLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPN 312
SLPL + L L L +S N L L G L +LQ + L GN+L P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 313 LRFLDLSRNNIT 324
L L L+ NN+T
Sbjct: 150 LEKLSLANNNLT 161
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 24 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 82
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q ++ + L +A + + YL + +
Sbjct: 83 PFYIITEFMTYGNLLDYLREC------NRQEVNAVVLLYMATQISSAMEYLEKK---NFI 133
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 134 HRDLAARNCLVGENHLVKVADF 155
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 26 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 84
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q ++ + L +A + + YL + +
Sbjct: 85 PFYIITEFMTYGNLLDYLREC------NRQEVNAVVLLYMATQISSAMEYLEKK---NFI 135
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 136 HRDLAARNCLVGENHLVKVADF 157
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 28 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKIRHEKLVQLYAVVSEEPI 87
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L Q +D ++ + E ++Y V
Sbjct: 88 --YIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 136
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 137 HRDLRAANILVGENLVCKVADF 158
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 75 TRIGRLN------PRFAVDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSC 128
TR+ +LN + VD G L +L + + S L S+P G LPAL VLD+
Sbjct: 55 TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL-QSLP-LLGQTLPALTVLDVSFN 110
Query: 129 SLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISL 188
L+ G+ L L LYL GN L P L KL L L+ N LT ++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 189 LGNLTRLNLASN-FFTGQIPSGLYSLSSIQFLNLSDN 224
L NL L L N +T IP G + + F L N
Sbjct: 171 LENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 193 TRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISG 252
T L+L+ N + L + + LNL LT G L L LDLS N +
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 90
Query: 253 SLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPN 312
SLPL + L L L +S N L L G L +LQ + L GN+L P L P
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 313 LRFLDLSRNNIT 324
L L L+ NN+T
Sbjct: 150 LEKLSLANNNLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 75 TRIGRLN------PRFAVDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSC 128
TR+ +LN + VD G L +L + + S L S+P G LPAL VLD+
Sbjct: 56 TRLTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQL-QSLP-LLGQTLPALTVLDVSFN 111
Query: 129 SLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISL 188
L+ G+ L L LYL GN L P L KL L L+ N LT ++
Sbjct: 112 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 171
Query: 189 LGNLTRLNLASN-FFTGQIPSGLYSLSSIQFLNLSDN 224
L NL L L N +T IP G + + F L N
Sbjct: 172 LENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 206
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 193 TRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISG 252
T L+L+ N + L + + LNL LT G L L LDLS N +
Sbjct: 35 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQ- 91
Query: 253 SLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPN 312
SLPL + L L L +S N L L G L +LQ + L GN+L P L P
Sbjct: 92 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 150
Query: 313 LRFLDLSRNNIT 324
L L L+ NN+T
Sbjct: 151 LEKLSLANNNLT 162
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 104 SLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLG 163
S+P IP Q+L L ++ PG F +L L LYL N L
Sbjct: 33 SVPAGIPT-------NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85
Query: 164 ELKKLSNLDLSRNLLTGEIPNAI-SLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLS 222
L +L+ LDL N LT +P+A+ L +L L + N T ++P G+ L+ + L L
Sbjct: 86 SLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143
Query: 223 DNALTGFIPSEVGNLDKLIEL 243
N L IP G D+L L
Sbjct: 144 QNQLKS-IPH--GAFDRLSSL 161
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 29/122 (23%)
Query: 204 GQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRN 263
+P+G+ + + Q L L DN +T P G D LI N
Sbjct: 32 ASVPAGIPT--NAQILYLHDNQITKLEP---GVFDSLI---------------------N 65
Query: 264 LAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLR-PNLRFLDLSRNN 322
L +L + N L G L G+F +L QL V+DL N+L LP+ +F R +L+ L + N
Sbjct: 66 LKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNK 123
Query: 323 IT 324
+T
Sbjct: 124 LT 125
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 26 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 84
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q ++ + L +A + + YL + +
Sbjct: 85 PFYIITEFMTYGNLLDYLREC------NRQEVNAVVLLYMATQISSAMEYLEKK---NFI 135
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 136 HRDLAARNCLVGENHLVKVADF 157
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 537 TTVVVKKVSLHSFKKESYMMELDLFSRV-SHARLVPLLGQCLEHETEKLLVYKYMVCGDL 595
V + K + H+ +KE+ M EL + S + H +V LLG C H L++ +Y GDL
Sbjct: 79 VAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT-HGGPVLVITEYCCYGDL 137
Query: 596 ASSLHRVTD--LE---------DDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
+ L R LE ++ L S D L + A+G+++L + +HRD
Sbjct: 138 LNFLRRKRPPGLEYSYNPSHNPEEQLSSRD---LLHFSSQVAQGMAFL---ASKNCIHRD 191
Query: 645 VQASSILLDDKFEVRLGSL 663
V A ++LL + ++G
Sbjct: 192 VAARNVLLTNGHVAKIGDF 210
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 513 NFSETNL---IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARL 569
N E L I KG GD+ G G V K + ++++ E + +++ H+ L
Sbjct: 10 NMKELKLLQTIGKGEFGDVMLGDYRGNKVAV--KCIKNDATAQAFLAEASVMTQLRHSNL 67
Query: 570 VPLLGQCLEHETEKLLVYKYMVCGDLASSLHR--VTDLEDDSLQSLDWITRLKIAIGAAE 627
V LLG +E + +V +YM G L L + L D L LK ++ E
Sbjct: 68 VQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL--------LKFSLDVCE 119
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDD 654
+ YL E N VHRD+ A ++L+ +
Sbjct: 120 AMEYL--EGN-NFVHRDLAARNVLVSE 143
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 22 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 80
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q + + L +A + + YL + +
Sbjct: 81 PFYIIIEFMTYGNLLDYLREC------NRQEVSAVVLLYMATQISSAMEYLEKK---NFI 131
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 132 HRDLAARNCLVGENHLVKVADF 153
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 24 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 82
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q + + L +A + + YL + +
Sbjct: 83 PFYIIIEFMTYGNLLDYLREC------NRQEVSAVVLLYMATQISSAMEYLEKK---NFI 133
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 134 HRDLAARNCLVGENHLVKVADF 155
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 513 NFSETNL---IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARL 569
N E L I KG GD+ G G V K + ++++ E + +++ H+ L
Sbjct: 19 NMKELKLLQTIGKGEFGDVMLGDYRGNKVAV--KCIKNDATAQAFLAEASVMTQLRHSNL 76
Query: 570 VPLLGQCLEHETEKLLVYKYMVCGDLASSLHR--VTDLEDDSLQSLDWITRLKIAIGAAE 627
V LLG +E + +V +YM G L L + L D L LK ++ E
Sbjct: 77 VQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL--------LKFSLDVCE 128
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDD 654
+ YL VHRD+ A ++L+ +
Sbjct: 129 AMEYLE---GNNFVHRDLAARNVLVSE 152
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 29 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 87
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q + + L +A + + YL + +
Sbjct: 88 PFYIITEFMTYGNLLDYLREC------NRQEVSAVVLLYMATQISSAMEYLEKK---NFI 138
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 139 HRDLAARNCLVGENHLVKVADF 160
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 24 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 82
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q + + L +A + + YL + +
Sbjct: 83 PFYIIIEFMTYGNLLDYLREC------NRQEVSAVVLLYMATQISSAMEYLEKK---NFI 133
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 134 HRDLAARNCLVGENHLVKVADF 155
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 24 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 82
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q + + L +A + + YL + +
Sbjct: 83 PFYIITEFMTYGNLLDYLREC------NRQEVSAVVLLYMATQISSAMEYLEKK---NFI 133
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 134 HRDLAARNCLVGENHLVKVADF 155
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 28 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 87
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L Q +D ++ + E ++Y V
Sbjct: 88 --YIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 136
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 137 HRDLRAANILVGENLVCKVADF 158
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 17 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 76
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L Q +D ++ + E ++Y V
Sbjct: 77 --YIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 125
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 126 HRDLRAANILVGENLVCKVADF 147
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 513 NFSETNLIK---KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARL 569
N E L++ KG GD+ G G V K + ++++ E + +++ H+ L
Sbjct: 4 NMKELKLLQTIGKGEFGDVMLGDYRGNKVAV--KCIKNDATAQAFLAEASVMTQLRHSNL 61
Query: 570 VPLLGQCLEHETEKLLVYKYMVCGDLASSLHR--VTDLEDDSLQSLDWITRLKIAIGAAE 627
V LLG +E + +V +YM G L L + L D L LK ++ E
Sbjct: 62 VQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL--------LKFSLDVCE 113
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDD 654
+ YL VHRD+ A ++L+ +
Sbjct: 114 AMEYLE---GNNFVHRDLAARNVLVSE 137
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 24 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 82
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q + + L +A + + YL + +
Sbjct: 83 PFYIITEFMTYGNLLDYLREC------NRQEVSAVVLLYMATQISSAMEYLEKK---NFI 133
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 134 HRDLAARNCLVGENHLVKVADF 155
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 28 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 87
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L Q +D ++ + E ++Y V
Sbjct: 88 --YIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 136
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 137 HRDLRAANILVGENLVCKVADF 158
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 22 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 80
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q + + L +A + + YL + +
Sbjct: 81 PFYIITEFMTYGNLLDYLREC------NRQEVSAVVLLYMATQISSAMEYLEKK---NFI 131
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 132 HRDLAARNCLVGENHLVKVADF 153
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 19 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 78
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L Q +D ++ + E ++Y V
Sbjct: 79 --YIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 127
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 128 HRDLRAANILVGENLVCKVADF 149
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 28 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 87
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L Q +D ++ + E ++Y V
Sbjct: 88 --YIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 136
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 137 HRDLRAANILVGENLVCKVADF 158
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEH 579
I KG GD+ G G V K + ++++ E + +++ H+ LV LLG +E
Sbjct: 201 IGKGEFGDVMLGDYRGNKVAV--KCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEE 258
Query: 580 ETEKLLVYKYMVCGDLASSLHR--VTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECN 637
+ +V +YM G L L + L D L LK ++ E + YL E N
Sbjct: 259 KGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCL--------LKFSLDVCEAMEYL--EGN 308
Query: 638 PPLVHRDVQASSILLDD 654
VHRD+ A ++L+ +
Sbjct: 309 -NFVHRDLAARNVLVSE 324
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L + E
Sbjct: 28 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYA--VVSEE 85
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L Q +D ++ + E ++Y V
Sbjct: 86 PIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 136
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 137 HRDLRAANILVGENLVCKVADF 158
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G++++G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 22 GQFGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-REP 80
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
++ ++M G+L L + Q + + L +A + + YL + +
Sbjct: 81 PFYIITEFMTYGNLLDYLREC------NRQEVSAVVLLYMATQISSAMEYLEKK---NFI 131
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 132 HRDLAARNCLVGENHLVKVADF 153
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 195 QGCFGEVWMGTWNGTTRVAIKTLKPGNMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 254
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L + L+ + + L + +A A G++Y+ V
Sbjct: 255 --YIVTEYMSKGSL------LDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM---NYV 303
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 304 HRDLRAANILVGENLVCKVADF 325
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 15/184 (8%)
Query: 93 TLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGN 152
T + ++ S+P IP Y LDL + SL G F L+ L LYL GN
Sbjct: 10 TTVECYSQGRTSVPTGIPAQTTY-------LDLETNSLKSLPNGVFDELTSLTQLYLGGN 62
Query: 153 SLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAI-SLLGNLTRLNLASNFFTGQIPSGLY 211
L +L L+ L+LS N L +PN + L L L L +N +P G++
Sbjct: 63 KLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQS-LPDGVF 120
Query: 212 -SLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVIS 270
L+ ++ L L N L L L + L N + P G+R L++ +
Sbjct: 121 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINK 176
Query: 271 ENGL 274
+G+
Sbjct: 177 HSGV 180
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 206 IPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLEL-RGLRNL 264
+P+G+ + ++ +L+L N+L L L +L L N + SLP + L +L
Sbjct: 22 VPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78
Query: 265 AKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLR-PNLRFLDLSRNNI 323
L +S N L+ L G+F L QL+ + L+ N+L +LP +F + L+ L L +N +
Sbjct: 79 TYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 17/155 (10%)
Query: 514 FSETNLIKKGHSGDL-FKGTLAGGTTVVVKKVSLH----SFKKESYMMELDLFSRVSHAR 568
FS+ I G G + F + V +KK+S + K + + E+ ++ H
Sbjct: 56 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115
Query: 569 LVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEG 628
+ G C E LV +Y L +DL + + L + + GA +G
Sbjct: 116 TIQYRG-CYLREHTAWLVMEY--------CLGSASDLLEVHKKPLQEVEIAAVTHGALQG 166
Query: 629 LSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
L+YLH ++HRDV+A +ILL + V+LG
Sbjct: 167 LAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDF 198
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 15/147 (10%)
Query: 536 GTTVVVK--KVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKL-LVYKYMVC 592
G V VK K + + E+D+ + H ++ G C + L LV +Y+
Sbjct: 60 GEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPL 119
Query: 593 GDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILL 652
G L L R S+ L A EG++YLH + +HRD+ A ++LL
Sbjct: 120 GSLRDYLPR---------HSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLL 167
Query: 653 DDKFEVRLGSLSELHAQGDSHQNVLTR 679
D+ V++G A + H+ R
Sbjct: 168 DNDRLVKIGDFGLAKAVPEGHEXYRVR 194
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L + E
Sbjct: 28 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYA--VVSEE 85
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L Q +D ++ + E ++Y V
Sbjct: 86 PIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 136
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 137 HRDLRAANILVGENLVCKVADF 158
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 520 IKKGHSGDLFKGTLAGGTTV-VVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLE 578
I G G ++KG G V ++K V + +++ E+ + + H ++ +G
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMG---- 99
Query: 579 HETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNP 638
+ T+ L C SSL++ +++ Q I IA A+G+ YLH +
Sbjct: 100 YMTKDNLAIVTQWCE--GSSLYKHLHVQETKFQMFQLID---IARQTAQGMDYLHAKN-- 152
Query: 639 PLVHRDVQASSILLDDKFEVRLGSL 663
++HRD+++++I L + V++G
Sbjct: 153 -IIHRDMKSNNIFLHEGLTVKIGDF 176
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVK--KVSLHSFKKESYMMELDLFSRVSHARL 569
G+F + +L + D GT G V VK K + + E+D+ + H +
Sbjct: 25 GHFGKVSLYCYDPTND---GT---GEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHI 78
Query: 570 VPLLGQCLEHETEK--LLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAE 627
+ G C E + EK LV +Y+ G L L R S+ L A E
Sbjct: 79 IKYKG-CCEDQGEKSLQLVMEYVPLGSLRDYLPR---------HSIGLAQLLLFAQQICE 128
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQGDSHQNVLTR 679
G++YLH + +HR++ A ++LLD+ V++G A + H+ R
Sbjct: 129 GMAYLHSQ---HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVR 177
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 23/172 (13%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVK--KVSLHSFKKESYMMELDLFSRVSHARL 569
G+F + +L + D GT G V VK K + + E+D+ + H +
Sbjct: 25 GHFGKVSLYCYDPTND---GT---GEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHI 78
Query: 570 VPLLGQCLEHETEK--LLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAE 627
+ G C E + EK LV +Y+ G L L R S+ L A E
Sbjct: 79 IKYKG-CCEDQGEKSLQLVMEYVPLGSLRDYLPR---------HSIGLAQLLLFAQQICE 128
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQGDSHQNVLTR 679
G++YLH + +HR++ A ++LLD+ V++G A + H+ R
Sbjct: 129 GMAYLHAQ---HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVR 177
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 522 KGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
+G G+++ GT G T V +K + + E+++ E + ++ H +LV L E
Sbjct: 28 QGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI 87
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G L L Q +D ++ + E ++Y V
Sbjct: 88 --YIVTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNY---------V 136
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD++A++IL+ + ++
Sbjct: 137 HRDLRAANILVGENLVCKVADF 158
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-ESYMMELDLFSRVSHARLV 570
G + I G G ++KG G V + V+ + ++ +++ E+ + + H ++
Sbjct: 36 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 95
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
+G + + +V ++ L LH + + I + IA A+G+
Sbjct: 96 LFMGYSTKPQLA--IVTQWCEGSSLYHHLHIIE-------TKFEMIKLIDIARQTAQGMD 146
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL---SELHAQGDSHQ 674
YLH + ++HRD+++++I L + V++G +E SHQ
Sbjct: 147 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQ 190
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-ESYMMELDLFSRVSHARLV 570
G + I G G ++KG G V + V+ + ++ +++ E+ + + H ++
Sbjct: 8 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
+G + + +V ++ L LH + + I + IA A+G+
Sbjct: 68 LFMGYSTKPQLA--IVTQWCEGSSLYHHLHIIET-------KFEMIKLIDIARQTAQGMD 118
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL---SELHAQGDSHQ 674
YLH + ++HRD+++++I L + V++G +E SHQ
Sbjct: 119 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQ 162
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 21/166 (12%)
Query: 507 LLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKE--SYMMELDLFSRV 564
LLR G S ++ +G++ D+ KG T V VK V+ + +E ++ E +
Sbjct: 21 LLRELGQGS-FGMVYEGNARDIIKG--EAETRVAVKTVNESASLRERIEFLNEASVMKGF 77
Query: 565 SHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD-------SLQSLDWIT 617
+ +V LLG + L+V + M GDL S L + ++ +LQ +
Sbjct: 78 TCHHVVRLLG-VVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM---- 132
Query: 618 RLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+++A A+G++YL+ + VHRD+ A + ++ F V++G
Sbjct: 133 -IQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDF 174
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 17/155 (10%)
Query: 514 FSETNLIKKGHSGDL-FKGTLAGGTTVVVKKVSLH----SFKKESYMMELDLFSRVSHAR 568
FS+ I G G + F + V +KK+S + K + + E+ ++ H
Sbjct: 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 569 LVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEG 628
+ G C E LV +Y L +DL + + L + + GA +G
Sbjct: 77 TIQYRG-CYLREHTAWLVMEY--------CLGSASDLLEVHKKPLQEVEIAAVTHGALQG 127
Query: 629 LSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
L+YLH + ++HRDV+A +ILL + V+LG
Sbjct: 128 LAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDF 159
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-ESYMMELDLFSRVSHARLV 570
G + I G G ++KG G V + V+ + ++ +++ E+ + + H ++
Sbjct: 13 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 72
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
+G + + +V ++ L LH + + I + IA A+G+
Sbjct: 73 LFMGYSTKPQLA--IVTQWCEGSSLYHHLHIIET-------KFEMIKLIDIARQTAQGMD 123
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YLH + ++HRD+++++I L + V++G
Sbjct: 124 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDF 153
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-ESYMMELDLFSRVSHARLV 570
G + I G G ++KG G V + V+ + ++ +++ E+ + + H ++
Sbjct: 28 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 87
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
+G + + +V ++ L LH + + I + IA A+G+
Sbjct: 88 LFMGYSTKPQLA--IVTQWCEGSSLYHHLHIIET-------KFEMIKLIDIARQTAQGMD 138
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL---SELHAQGDSHQ 674
YLH + ++HRD+++++I L + V++G +E SHQ
Sbjct: 139 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQ 182
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-ESYMMELDLFSRVSHARLV 570
G + I G G ++KG G V + V+ + ++ +++ E+ + + H ++
Sbjct: 8 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
+G + + +V ++ L LH + + I + IA A+G+
Sbjct: 68 LFMGYSTKPQLA--IVTQWCEGSSLYHHLHIIET-------KFEMIKLIDIARQTAQGMD 118
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YLH + ++HRD+++++I L + V++G
Sbjct: 119 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDF 148
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 215 SIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGL 274
S++ LNL ++ + + +L ELDL+ + G LP ++GL L KLV+S N
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF 310
Query: 275 EG--QLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLR-PNLRFLDLSRNNITGS 326
+ Q+S FP+L L + GN L + NL+ LDLS N+I S
Sbjct: 311 DQLCQISAANFPSLTHLYI---RGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS 362
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 101/246 (41%), Gaps = 28/246 (11%)
Query: 89 LGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGS-FGNLSRLNVL 147
L NL+ L + N S G + F P L++LDL L + P S F NL L VL
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFK-ECPQLELLDLAFTRLHINAPQSPFQNLHFLQVL 427
Query: 148 YLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIP 207
L+ L + L L L +L+L N G +T+ NL
Sbjct: 428 NLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQD---------GTITKTNL---------- 468
Query: 208 SGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKL 267
L ++ S++ L LS L +L K+ +DLS NS++ L L+ + L
Sbjct: 469 --LQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIY-L 525
Query: 268 VISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFL---RPNLRFLDLSRNNIT 324
++ N + +S L P L Q ++LS N LD FL + NL L+ S
Sbjct: 526 NLAANSI-NIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKENLHKLEGSEETTC 584
Query: 325 GSWPIL 330
+ P L
Sbjct: 585 ANPPSL 590
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%)
Query: 116 RLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSR 175
RL L LDL C ++ +F + +L+ L L+GN L +L K L +L L +
Sbjct: 52 RLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQ 111
Query: 176 NLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVG 235
++ + L NL L L SN + + +++ L+ +NA+ ++
Sbjct: 112 TGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMR 171
Query: 236 NLDKLIELDLSKN 248
+L++ I L L+ N
Sbjct: 172 SLEQAINLSLNFN 184
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 7/171 (4%)
Query: 142 SRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISL--LGNLTRLNLAS 199
S L + N +V LK+L L L RN L A+ + +L L+++
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 200 NFFTGQIPSGLYSLS-SIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLEL 258
N + + SI LNLS N LTG + + K+ LDL N I S+P ++
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDV 469
Query: 259 RGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFL 309
L+ L +L ++ N L+ + +G+F L LQ + L N D P +L
Sbjct: 470 THLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 519
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 31/183 (16%)
Query: 117 LPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGN------SLAGN-VPA----TLGEL 165
L +L L+L L+ G+F LS+L L+L N S A N VP+ LGEL
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181
Query: 166 KKLSNLDLSRNLLTG---------------EIPNAISLLGNLTRLNLASNFFTGQIPSGL 210
KKL + S G ++PN L+G L L ++ N F P
Sbjct: 182 KKLEYI--SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG-LEELEMSGNHFPEIRPGSF 238
Query: 211 YSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLEL-RGLRNLAKLVI 269
+ LSS++ L + ++ ++ + L L+EL+L+ N++S SLP +L LR L +L +
Sbjct: 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297
Query: 270 SEN 272
N
Sbjct: 298 HHN 300
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 205 QIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNL 264
++P G+ S + ++LNL +N + +L L L L +NSI GL +L
Sbjct: 68 EVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125
Query: 265 AKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLR-PNLRFLDL 318
L + +N L + G F L +L+ + L N ++ ++P+ F R P+L LDL
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL 178
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 205 QIPSGLYS-LSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRN 263
QI G ++ L+S+ L L DN LT L KL EL L N I + +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172
Query: 264 LAKLVISENGLEGQLSEGLFPTLDQLQVVDL 294
L +L + E +SEG F L L+ ++L
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-ESYMMELDLFSRVSHARLV 570
G + I G G ++KG G V + V+ + ++ +++ E+ + + H ++
Sbjct: 35 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 94
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
+G + + +V ++ L LH + + I + IA A+G+
Sbjct: 95 LFMGYSTKPQLA--IVTQWCEGSSLYHHLHIIE-------TKFEMIKLIDIARQTAQGMD 145
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YLH + ++HRD+++++I L + V++G
Sbjct: 146 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDF 175
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-ESYMMELDLFSRVSHARLV 570
G + I G G ++KG G V + V+ + ++ +++ E+ + + H ++
Sbjct: 36 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 95
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
+G + + +V ++ L LH + + I + IA A+G+
Sbjct: 96 LFMGYSTKPQLA--IVTQWCEGSSLYHHLHIIE-------TKFEMIKLIDIARQTAQGMD 146
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YLH + ++HRD+++++I L + V++G
Sbjct: 147 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDF 176
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 21/166 (12%)
Query: 507 LLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKE--SYMMELDLFSRV 564
LLR G S ++ +G++ D+ KG T V VK V+ + +E ++ E +
Sbjct: 18 LLRELGQGS-FGMVYEGNARDIIKG--EAETRVAVKTVNESASLRERIEFLNEASVMKGF 74
Query: 565 SHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD-------SLQSLDWIT 617
+ +V LLG + L+V + M GDL S L + ++ +LQ +
Sbjct: 75 TCHHVVRLLG-VVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM---- 129
Query: 618 RLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+++A A+G++YL+ + VHRD+ A + ++ F V++G
Sbjct: 130 -IQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDF 171
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-ESYMMELDLFSRVSHARLV 570
G + I G G ++KG G V + V+ + ++ +++ E+ + + H ++
Sbjct: 10 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 69
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
+G + + +V ++ L LH + + I + IA A+G+
Sbjct: 70 LFMGYSTKPQLA--IVTQWCEGSSLYHHLHIIET-------KFEMIKLIDIARQTAQGMD 120
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YLH + ++HRD+++++I L + V++G
Sbjct: 121 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDF 150
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-ESYMMELDLFSRVSHARLV 570
G + I G G ++KG G V + V+ + ++ +++ E+ + + H ++
Sbjct: 13 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 72
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
+G + + +V ++ L LH + + I + IA A+G+
Sbjct: 73 LFMGYSTKPQLA--IVTQWCEGSSLYHHLHIIET-------KFEMIKLIDIARQTAQGMD 123
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YLH + ++HRD+++++I L + V++G
Sbjct: 124 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDF 153
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 21/166 (12%)
Query: 507 LLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKE--SYMMELDLFSRV 564
LLR G S ++ +G++ D+ KG T V VK V+ + +E ++ E +
Sbjct: 21 LLRELGQGS-FGMVYEGNARDIIKG--EAETRVAVKTVNESASLRERIEFLNEASVMKGF 77
Query: 565 SHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD-------SLQSLDWIT 617
+ +V LLG + L+V + M GDL S L + ++ +LQ +
Sbjct: 78 TCHHVVRLLG-VVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM---- 132
Query: 618 RLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+++A A+G++YL+ + VHRD+ A + ++ F V++G
Sbjct: 133 -IQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDF 174
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 96/252 (38%), Gaps = 41/252 (16%)
Query: 114 GYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDL 173
G + L LDL +L GSF L L L L N++ P + L L L L
Sbjct: 244 GLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Query: 174 SRNLLTGEI-----PN----AISLLGNLTRLNL--------ASNFFTGQIPSGLYSLS-- 214
R + PN + L L LN+ SN FTG + SLS
Sbjct: 304 KRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKT 363
Query: 215 --SIQ----------------FLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLP- 255
S+Q LNL+ N ++ L +L LDL N I L
Sbjct: 364 FTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSG 423
Query: 256 LELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRP--NL 313
E RGLRN+ ++ +S N QLS F + LQ + L L + RP NL
Sbjct: 424 QEWRGLRNIFEIYLSYNKY-LQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNL 482
Query: 314 RFLDLSRNNITG 325
LDLS NNI
Sbjct: 483 TILDLSNNNIAN 494
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 214 SSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENG 273
S+I LNL+ N L P+ +L LD NSIS P EL + L K++ ++
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP-ELCQILPLLKVLNLQHN 83
Query: 274 LEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNNITGS 326
Q+S+ F L +DL N + + NL LDLS N ++ +
Sbjct: 84 ELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 4/194 (2%)
Query: 117 LPA-LQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSR 175
LP+ + VL+L L P +F S+L +L NS++ P L L L+L
Sbjct: 23 LPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQH 82
Query: 176 NLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVG 235
N L+ NLT L+L SN + + ++ L+LS N L+
Sbjct: 83 NELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGV 142
Query: 236 NLDKLIELDLSKNSISG--SLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVD 293
L+ L EL L+KN I S LE G +L KL +S N L+ + S G F T+ +L +
Sbjct: 143 QLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLK-EFSPGCFQTIGKLFALL 201
Query: 294 LSGNKLDGALPATL 307
L+ +L+ L L
Sbjct: 202 LNNAQLNPHLTEKL 215
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 107/275 (38%), Gaps = 45/275 (16%)
Query: 77 IGRLNPR--FAVDSLGNLTLLSSFNASGLSLPG--SIPEWFGYRLPALQVLDLRSCSLSG 132
I RL+PR + + +L L+L +F +SL +I ++ L L+ L++ ++
Sbjct: 284 IQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPS 343
Query: 133 SIPGSFGNLSRLNVLYLSGN-----SLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAIS 187
+ +F L L L LS +L +L L L+L++N ++ S
Sbjct: 344 TKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAH-SPLLTLNLTKNHISKIANGTFS 402
Query: 188 LLGNLTRLNLASN----FFTGQIPSGLYSLSSI-----QFLNLSDNAL------------ 226
LG L L+L N +GQ GL ++ I ++L LS ++
Sbjct: 403 WLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLR 462
Query: 227 ------TGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSE 280
PS L L LDLS N+I+ L GL NL L N L
Sbjct: 463 RVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKR 522
Query: 281 G-------LFPTLDQLQVVDLSGNKLDGALPATLF 308
L L +++L N LD +P +F
Sbjct: 523 ANPGGPVNFLKGLSHLHILNLESNGLD-EIPVGVF 556
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 95/250 (38%), Gaps = 49/250 (19%)
Query: 119 ALQVLDLRSCSLSGSIPGSFGNLSRLNVLY---------------------------LSG 151
+L+ LDL S L PG F + +L L L+
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLAN 231
Query: 152 NSLAGNVPATLGELK--KLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSG 209
N L +T LK L+ LDLS N L + S L +L L+L N P
Sbjct: 232 NQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRS 291
Query: 210 LYSLSSIQFLNLSDNALTGFIPSEVG-----NLD-------KLIE-LDLSKNSISGSLPL 256
Y LS++++L+L F V N+D K +E L++ N+I +
Sbjct: 292 FYGLSNLRYLSLK----RAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSN 347
Query: 257 ELRGLRNLAKLVISENGLEGQ-LSEGLFPTLDQ--LQVVDLSGNKLDGALPATLFLRPNL 313
GL +L L +S+ Q L+ F +L L ++L+ N + T L
Sbjct: 348 TFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQL 407
Query: 314 RFLDLSRNNI 323
R LDL N I
Sbjct: 408 RILDLGLNEI 417
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 21/166 (12%)
Query: 507 LLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKE--SYMMELDLFSRV 564
LLR G S ++ +G++ D+ KG T V VK V+ + +E ++ E +
Sbjct: 21 LLRELGQGS-FGMVYEGNARDIIKG--EAETRVAVKTVNESASLRERIEFLNEASVMKGF 77
Query: 565 SHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD-------SLQSLDWIT 617
+ +V LLG + L+V + M GDL S L + ++ +LQ +
Sbjct: 78 TCHHVVRLLG-VVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM---- 132
Query: 618 RLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+++A A+G++YL+ + VHRD+ A + ++ F V++G
Sbjct: 133 -IQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDF 174
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 21/166 (12%)
Query: 507 LLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKE--SYMMELDLFSRV 564
LLR G S ++ +G++ D+ KG T V VK V+ + +E ++ E +
Sbjct: 21 LLRELGQGS-FGMVYEGNARDIIKG--EAETRVAVKTVNESASLRERIEFLNEASVMKGF 77
Query: 565 SHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD-------SLQSLDWIT 617
+ +V LLG + L+V + M GDL S L + ++ +LQ +
Sbjct: 78 TCHHVVRLLG-VVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM---- 132
Query: 618 RLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+++A A+G++YL+ + VHRD+ A + ++ F V++G
Sbjct: 133 -IQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDF 174
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 21/166 (12%)
Query: 507 LLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKE--SYMMELDLFSRV 564
LLR G S ++ +G++ D+ KG T V VK V+ + +E ++ E +
Sbjct: 20 LLRELGQGS-FGMVYEGNARDIIKG--EAETRVAVKTVNESASLRERIEFLNEASVMKGF 76
Query: 565 SHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD-------SLQSLDWIT 617
+ +V LLG + L+V + M GDL S L + ++ +LQ +
Sbjct: 77 TCHHVVRLLG-VVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM---- 131
Query: 618 RLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+++A A+G++YL+ + VHRD+ A + ++ F V++G
Sbjct: 132 -IQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDF 173
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 123/289 (42%), Gaps = 60/289 (20%)
Query: 99 NASGLSLPG-------SIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSG 151
N S +SL G +P+ F + Q L + C L P +L L L L+
Sbjct: 281 NVSAMSLAGVSIKYLEDVPKHFKW-----QSLSIIRCQLK-QFPT--LDLPFLKSLTLTM 332
Query: 152 NSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLG--NLTRLNLASNFFTGQIPS- 208
N G++ L LS LDLSRN L+ + S LG +L L+L+ F G I
Sbjct: 333 N--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS---FNGAIIMS 387
Query: 209 ----GLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNL 264
GL L + F + + +T F S +L+KL+ LD+S + GL +L
Sbjct: 388 ANFMGLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 445
Query: 265 AKLVISENGLEG------------------------QLSEGLFPTLDQLQVVDLSGNK-- 298
L ++ N + Q+S G+F TL +LQ++++S N
Sbjct: 446 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 505
Query: 299 -LDGALPATLFLRPNLRFLDLSRNNITGSWPILSTNGNASGAVFNISNN 346
LD + L+ +L LD S N I S IL + S A FN++NN
Sbjct: 506 FLDSSHYNQLY---SLSTLDCSFNRIETSKGILQ-HFPKSLAFFNLTNN 550
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 120 LQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLT 179
LQ LDL C + ++ L L+ L L+GN + P + L L NL L
Sbjct: 53 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 112
Query: 180 GEIPNAISLLGNLTRLNLASNFF-TGQIPSGLYSLSSIQFLNLSDNAL 226
I L L +LN+A NF + ++P+ +L+++ ++LS N +
Sbjct: 113 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 500 DSFTYEQLLRATGNFSETNLIKKGHSGDLFKGT-LAGGTTVVVKKVSLHSFKKESYMMEL 558
D L G F L+ G G ++KG + G +K + + ++E E+
Sbjct: 12 DEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEI 71
Query: 559 DLFSRVSHAR-LVPLLGQCLEH-----ETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQS 612
++ + SH R + G ++ + + LV ++ CG S + + + ++L+
Sbjct: 72 NMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEF--CG-AGSVTDLIKNTKGNTLKE 128
Query: 613 LDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+WI + I GLS+LH ++HRD++ ++LL + EV+L
Sbjct: 129 -EWIAYICREI--LRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKL 170
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-ESYMMELDLFSRVSHARLV 570
G + I G G ++KG G V + V+ + ++ +++ E+ + + H ++
Sbjct: 8 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
+G + +V ++ L LH + + I + IA A+G+
Sbjct: 68 LFMGYSTAPQLA--IVTQWCEGSSLYHHLHIIET-------KFEMIKLIDIARQTAQGMD 118
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YLH + ++HRD+++++I L + V++G
Sbjct: 119 YLHAKS---IIHRDLKSNNIFLHEDLTVKIGDF 148
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 123/289 (42%), Gaps = 60/289 (20%)
Query: 99 NASGLSLPG-------SIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSG 151
N S +SL G +P+ F + Q L + C L P +L L L L+
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKW-----QSLSIIRCQLK-QFPT--LDLPFLKSLTLTM 337
Query: 152 NSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLG--NLTRLNLASNFFTGQIPS- 208
N G++ L LS LDLSRN L+ + S LG +L L+L+ F G I
Sbjct: 338 N--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS---FNGAIIMS 392
Query: 209 ----GLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNL 264
GL L + F + + +T F S +L+KL+ LD+S + GL +L
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450
Query: 265 AKLVISENGLEG------------------------QLSEGLFPTLDQLQVVDLSGNK-- 298
L ++ N + Q+S G+F TL +LQ++++S N
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510
Query: 299 -LDGALPATLFLRPNLRFLDLSRNNITGSWPILSTNGNASGAVFNISNN 346
LD + L+ +L LD S N I S IL + S A FN++NN
Sbjct: 511 FLDSSHYNQLY---SLSTLDCSFNRIETSKGILQ-HFPKSLAFFNLTNN 555
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 120 LQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLT 179
LQ LDL C + ++ L L+ L L+GN + P + L L NL L
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 180 GEIPNAISLLGNLTRLNLASNFF-TGQIPSGLYSLSSIQFLNLSDNAL 226
I L L +LN+A NF + ++P+ +L+++ ++LS N +
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 523 GHSGDLFKGTLAGGT-TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHET 581
G G+++ G + TV VK + + + E ++ E + + H LV LLG C E
Sbjct: 43 GQYGEVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT-LEP 101
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLV 641
+V +YM G+L L E + + L +A + + YL + +
Sbjct: 102 PFYIVTEYMPYGNLLDYLRECNREEVTA------VVLLYMATQISSAMEYLEKK---NFI 152
Query: 642 HRDVQASSILLDDKFEVRLGSL 663
HRD+ A + L+ + V++
Sbjct: 153 HRDLAARNCLVGENHVVKVADF 174
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 12/210 (5%)
Query: 118 PALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNL 177
P +LDL++ +S F L L L L N ++ L+KL L +S+N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 178 LTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYS-LSSIQFLNLSDNAL--TGFIPSEV 234
L PN L +L L + N ++P G++S L ++ + + N L +GF P
Sbjct: 114 LVEIPPN---LPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 235 GNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDL 294
L KL L +S+ ++G +P +L L +L + N ++ E L +L + L
Sbjct: 170 DGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLL-RYSKLYRLGL 224
Query: 295 SGNKLDGALPATLFLRPNLRFLDLSRNNIT 324
N++ +L P LR L L N ++
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 67/174 (38%), Gaps = 27/174 (15%)
Query: 137 SFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLN 196
+ L+ L L L+GN L +L L L L N L L NLT LN
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 197 LASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPL 256
LA N +P G++ L L ELDLS N + SLP
Sbjct: 140 LAHNQLQS-LPKGVFD-----------------------KLTNLTELDLSYNQLQ-SLPE 174
Query: 257 EL-RGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFL 309
+ L L L + +N L+ + +G+F L LQ + L N D P +L
Sbjct: 175 GVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 227
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 209 GLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLEL-RGLRNLAKL 267
G+ L ++++L L N L S + L L L L+ N + SLP + L NL +L
Sbjct: 58 GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKEL 114
Query: 268 VISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLR-PNLRFLDLSRNNI 323
V+ EN L+ L +G+F L L ++L+ N+L +LP +F + NL LDLS N +
Sbjct: 115 VLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQL 169
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 208 SGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKL 267
S L L+++ +L L+ N L L L EL L +N + L NL L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 268 VISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLR-PNLRFLDLSRNNI 323
++ N L+ L +G+F L L +DLS N+L +LP +F + L+ L L +N +
Sbjct: 139 NLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 518 NLIKKGHSGDLFKGTLA--GGTT--VVVKKVSLHSFKK---ESYMMELDLFSRVSHARLV 570
++ +G G + +G L GT+ V VK + L + + E ++ E SH ++
Sbjct: 40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99
Query: 571 PLLGQCLEHETE----KLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
LLG C+E ++ +++ +M GDL + L + LE + + T LK + A
Sbjct: 100 RLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYL-LYSRLETGP-KHIPLQTLLKFMVDIA 157
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGS--LSELHAQGDSHQN 675
G+ YL N +HRD+ A + +L D V + LS+ GD ++
Sbjct: 158 LGMEYL---SNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQ 205
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 18/220 (8%)
Query: 120 LQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNL---DLSRN 176
L +L+L +S +F L L VL L N + + T E + L N+ LS N
Sbjct: 393 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL--TGQEWRGLENIFEIYLSYN 450
Query: 177 LLTGEIPNAISLLGNLTRLNLASNFFTG--QIPSGLYSLSSIQFLNLSDNALTGFIPSEV 234
N+ +L+ +L RL L PS L ++ L+LS+N + +
Sbjct: 451 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 510
Query: 235 GNLDKLIELDLSKNSIS--------GSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTL 286
L+KL LDL N+++ G L+GL +L L + NG + ++ +F L
Sbjct: 511 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDL 569
Query: 287 DQLQVVDLSGNKLDGALPATLF-LRPNLRFLDLSRNNITG 325
+L+++DL N L+ LPA++F + +L+ L+L +N IT
Sbjct: 570 FELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITS 608
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 93/218 (42%), Gaps = 14/218 (6%)
Query: 116 RLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSR 175
+LP L+VL+L+ LS +F + L L+L NS+ + K L LDLS
Sbjct: 81 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 140
Query: 176 NLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGL--YSLSSIQFLNLSDNALTGFIPSE 233
N L+ L NL L L++N L ++ SS++ L LS N + F P
Sbjct: 141 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 200
Query: 234 VGNLDKLIELDLSK----NSISGSLPLEL--RGLRNLAKLVISENGLEGQLSEGLFPTLD 287
+ +L L L+ S++ L LEL +RNL+ N S F L
Sbjct: 201 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL----SNSQLSTTSNTTFLGLK 256
Query: 288 --QLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNNI 323
L ++DLS N L+ + P L + L NNI
Sbjct: 257 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 294
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 14/218 (6%)
Query: 120 LQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGE-LKKLSNLDLSRNLL 178
L +L+L +S +F L L VL L N + + L+ + + LS N
Sbjct: 388 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 447
Query: 179 TGEIPNAISLLGNLTRLNLASNFFTG--QIPSGLYSLSSIQFLNLSDNALTGFIPSEVGN 236
N+ +L+ +L RL L PS L ++ L+LS+N + +
Sbjct: 448 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 507
Query: 237 LDKLIELDLSKNSIS--------GSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQ 288
L+KL LDL N+++ G L+GL +L L + NG + ++ +F L +
Sbjct: 508 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFE 566
Query: 289 LQVVDLSGNKLDGALPATLF-LRPNLRFLDLSRNNITG 325
L+++DL N L+ LPA++F + +L+ L+L +N IT
Sbjct: 567 LKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITS 603
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 93/218 (42%), Gaps = 14/218 (6%)
Query: 116 RLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSR 175
+LP L+VL+L+ LS +F + L L+L NS+ + K L LDLS
Sbjct: 76 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 135
Query: 176 NLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGL--YSLSSIQFLNLSDNALTGFIPSE 233
N L+ L NL L L++N L ++ SS++ L LS N + F P
Sbjct: 136 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 195
Query: 234 VGNLDKLIELDLSK----NSISGSLPLEL--RGLRNLAKLVISENGLEGQLSEGLFPTLD 287
+ +L L L+ S++ L LEL +RNL+ N S F L
Sbjct: 196 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL----SNSQLSTTSNTTFLGLK 251
Query: 288 --QLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNNI 323
L ++DLS N L+ + P L + L NNI
Sbjct: 252 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 14/218 (6%)
Query: 120 LQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGE-LKKLSNLDLSRNLL 178
L +L+L +S +F L L VL L N + + L+ + + LS N
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442
Query: 179 TGEIPNAISLLGNLTRLNLASNFFTG--QIPSGLYSLSSIQFLNLSDNALTGFIPSEVGN 236
N+ +L+ +L RL L PS L ++ L+LS+N + +
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502
Query: 237 LDKLIELDLSKNSIS--------GSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQ 288
L+KL LDL N+++ G L+GL +L L + NG + ++ +F L +
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFE 561
Query: 289 LQVVDLSGNKLDGALPATLF-LRPNLRFLDLSRNNITG 325
L+++DL N L+ LPA++F + +L+ L+L +N IT
Sbjct: 562 LKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITS 598
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 93/218 (42%), Gaps = 14/218 (6%)
Query: 116 RLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSR 175
+LP L+VL+L+ LS +F + L L+L NS+ + K L LDLS
Sbjct: 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130
Query: 176 NLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGL--YSLSSIQFLNLSDNALTGFIPSE 233
N L+ L NL L L++N L ++ SS++ L LS N + F P
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190
Query: 234 VGNLDKLIELDLSK----NSISGSLPLEL--RGLRNLAKLVISENGLEGQLSEGLFPTLD 287
+ +L L L+ S++ L LEL +RNL+ N S F L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL----SNSQLSTTSNTTFLGLK 246
Query: 288 --QLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNNI 323
L ++DLS N L+ + P L + L NNI
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 34/172 (19%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK-KESYMMELDLFSRVSHARLV 570
G FS +L++ H G + +K++ H + +E E D+ +H ++
Sbjct: 40 GGFSYVDLVEGLHDGHFY----------ALKRILCHEQQDREEAQREADMHRLFNHPNIL 89
Query: 571 PLLGQCLEH---ETEKLLVYKYMVCGDLASSLHRVTD----LEDDSLQSLDWITRLKIAI 623
L+ CL + E L+ + G L + + R+ D L +D + L + +
Sbjct: 90 RLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQI--------LWLLL 141
Query: 624 GAAEGLSYLHHECNPPLVHRDVQASSILLDDKFE---VRLGSLSE--LHAQG 670
G GL +H + HRD++ ++ILL D+ + + LGS+++ +H +G
Sbjct: 142 GICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEG 190
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 20/177 (11%)
Query: 491 DPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK 550
+P SG + ++L+ T ++ G G ++KG V V++
Sbjct: 18 EPLTPSGTAPNQAQLRILKET-ELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILN 76
Query: 551 KES-------YMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVT 603
+ + +M E + + + H LV LLG CL + LV + M G L +H
Sbjct: 77 ETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQ--LVTQLMPHGCLLEYVHEHK 134
Query: 604 DLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
D L L+W ++ A+G+ YL LVHRD+ A ++L+ V++
Sbjct: 135 DNIGSQL-LLNWCVQI------AKGMMYLEER---RLVHRDLAARNVLVKSPNHVKI 181
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 499 GDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAG------GTTVVVKKVSLHSFKKE 552
D F ++ A + + + +G G +++G G T V +K V+ + +E
Sbjct: 3 ADVFVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRE 62
Query: 553 --SYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVT-DLEDDS 609
++ E + + +V LLG + L++ + M GDL S L + ++E++
Sbjct: 63 RIEFLNEASVMKEFNCHHVVRLLG-VVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNP 121
Query: 610 LQSLDWITRL-KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ + ++++ ++A A+G++YL+ VHRD+ A + ++ + F V++G
Sbjct: 122 VLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDF 173
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 523 GHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETE 582
G G + G G V +K + S ++ ++ E + +SH +LV L G C +
Sbjct: 35 GQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRP- 93
Query: 583 KLLVYKYMVCGDLASSL----HRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNP 638
++ +YM G L + L HR Q L L++ E + YL +
Sbjct: 94 IFIITEYMANGCLLNYLREMRHRF------QTQQL-----LEMCKDVCEAMEYLE---SK 139
Query: 639 PLVHRDVQASSILLDDKFEVRLGSL 663
+HRD+ A + L++D+ V++
Sbjct: 140 QFLHRDLAARNCLVNDQGVVKVSDF 164
>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution
Length = 543
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 555 MMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLD 614
M+E + ++V H+R + L E +T+ LV M GD+ ++ V D ++ Q
Sbjct: 233 MVEKKILAKV-HSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNV-DEDNPGFQEPR 290
Query: 615 WITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
I + GL +LH +++RD++ ++LLDD VR+ L
Sbjct: 291 AIFYTAQIVS---GLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDL 333
>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4X|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4Y|A Chain A, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Y|B Chain B, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Z|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 1.84a
pdb|3C50|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C50|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C51|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
pdb|3C51|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
Length = 543
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 555 MMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLD 614
M+E + ++V H+R + L E +T+ LV M GD+ ++ V D ++ Q
Sbjct: 233 MVEKKILAKV-HSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNV-DEDNPGFQEPR 290
Query: 615 WITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
I + GL +LH +++RD++ ++LLDD VR+ L
Sbjct: 291 AIFYTAQIVS---GLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDL 333
>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
pdb|3C4W|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
Length = 543
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 555 MMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLD 614
M+E + ++V H+R + L E +T+ LV M GD+ ++ V D ++ Q
Sbjct: 233 MVEKKILAKV-HSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNV-DEDNPGFQEPR 290
Query: 615 WITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
I + GL +LH +++RD++ ++LLDD VR+ L
Sbjct: 291 AIFYTAQIVS---GLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDL 333
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 523 GHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETE 582
G G + G G V +K + S ++ ++ E + +SH +LV L G C +
Sbjct: 35 GQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRP- 93
Query: 583 KLLVYKYMVCGDLASSL----HRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNP 638
++ +YM G L + L HR Q L L++ E + YL +
Sbjct: 94 IFIITEYMANGCLLNYLREMRHRF------QTQQL-----LEMCKDVCEAMEYLE---SK 139
Query: 639 PLVHRDVQASSILLDDKFEVRLGSL 663
+HRD+ A + L++D+ V++
Sbjct: 140 QFLHRDLAARNCLVNDQGVVKVSDF 164
>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|B Chain B, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|C Chain C, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|D Chain D, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
Length = 543
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 555 MMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLD 614
M+E + ++V H+R + L E +T+ LV M GD+ ++ V D ++ Q
Sbjct: 233 MVEKKILAKV-HSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNV-DEDNPGFQEPR 290
Query: 615 WITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
I + GL +LH +++RD++ ++LLDD VR+ L
Sbjct: 291 AIFYTAQIVS---GLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDL 333
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 523 GHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETE 582
G G + G G V +K + S ++ ++ E + +SH +LV L G C + +
Sbjct: 20 GQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK-QRP 78
Query: 583 KLLVYKYMVCGDLASSL----HRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNP 638
++ +YM G L + L HR Q L L++ E + YL +
Sbjct: 79 IFIITEYMANGCLLNYLREMRHRF------QTQQL-----LEMCKDVCEAMEYLE---SK 124
Query: 639 PLVHRDVQASSILLDDKFEVRLGSL 663
+HRD+ A + L++D+ V++
Sbjct: 125 QFLHRDLAARNCLVNDQGVVKVSDF 149
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 91/220 (41%), Gaps = 33/220 (15%)
Query: 118 PALQVLDLRSCSLSGSIPGS-FGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRN 176
P L++LD+ L P S F NL L VL LS L + L L+ L +L+L N
Sbjct: 399 PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
Query: 177 -LLTGEI--PNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSE 233
G I N + ++G+L L L+S + L ++ L+LS N+LTG
Sbjct: 459 SFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDA 518
Query: 234 VGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVD 293
+ +L K + L+++ N+I P L P L Q +++
Sbjct: 519 LSHL-KGLYLNMASNNIRIIPP-------------------------HLLPALSQQSIIN 552
Query: 294 LSGNKLDGALPATLFL---RPNLRFLDLSRNNITGSWPIL 330
LS N LD F+ + NL L+ S + P L
Sbjct: 553 LSHNPLDCTCSNIHFITWYKENLHKLEDSEETTCANPPSL 592
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 73/179 (40%), Gaps = 38/179 (21%)
Query: 117 LPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLA-GNVPAT-------------- 161
L L+VL+L C L S L L L L GNS G++ T
Sbjct: 423 LHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILIL 482
Query: 162 ------------LGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSG 209
L+ +++LDLS N LTG+ +A+S L L LN+ASN P
Sbjct: 483 SSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHL 541
Query: 210 LYSLSSIQFLNLSDNAL------TGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLR 262
L +LS +NLS N L FI NL KL + + + P LRG++
Sbjct: 542 LPALSQQSIINLSHNPLDCTCSNIHFITWYKENLHKLED----SEETTCANPPSLRGVK 596
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 4/143 (2%)
Query: 116 RLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSR 175
RL L LDL C ++ +F + +LN + L+GN L +L K L +L L++
Sbjct: 54 RLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQ 113
Query: 176 NLLTGEIPNAISLLGNLTRLNLASNFFTG-QIPSGLYSLSSIQFLNLSDNALTGFIPSEV 234
++ + L NL L+L SN + +P + +++ L+ +NA+ +
Sbjct: 114 TGISNLEFIPVHNLENLESLHLGSNHISSINLPEN-FPTQNLKVLDFQNNAIHYISRKDT 172
Query: 235 GNLDKL--IELDLSKNSISGSLP 255
+L++ + L+ + N I G P
Sbjct: 173 NSLEQATNLSLNFNGNDIKGIEP 195
>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|C Chain C, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|D Chain D, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|E Chain E, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|F Chain F, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
Length = 384
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 501 SFTYEQLLRA--TGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMEL 558
+F + ++LRA G+F + +++K + ++ V + + FK EL
Sbjct: 13 NFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFK------EL 66
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITR 618
+ + H LV L + E + +V ++ GDL L + ++++++ +I
Sbjct: 67 QIMQGLEHPFLVNLW-YSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEETVKL--FICE 123
Query: 619 LKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLS 664
L +A L YL N ++HRD++ +ILLD+ V + +
Sbjct: 124 LVMA------LDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFN 160
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 523 GHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETE 582
G G + G G V +K + S ++ ++ E + +SH +LV L G C +
Sbjct: 20 GQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRP- 78
Query: 583 KLLVYKYMVCGDLASSL----HRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNP 638
++ +YM G L + L HR Q L L++ E + YL +
Sbjct: 79 IFIITEYMANGCLLNYLREMRHRF------QTQQL-----LEMCKDVCEAMEYLE---SK 124
Query: 639 PLVHRDVQASSILLDDKFEVRLGSL 663
+HRD+ A + L++D+ V++
Sbjct: 125 QFLHRDLAARNCLVNDQGVVKVSDF 149
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 18/153 (11%)
Query: 518 NLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSR-------VSHARLV 570
+I KGH G ++ G ++ ++ S + + M +++ F R ++H ++
Sbjct: 27 RVIGKGHFGVVYHGEYIDQAQNRIQ-CAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVL 85
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
L+G L E ++ YM GDL + + + +++ L + + A G+
Sbjct: 86 ALIGIMLPPEGLPHVLLPYMCHGDLLQFIR--SPQRNPTVKDL-----ISFGLQVARGME 138
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YL + VHRD+ A + +LD+ F V++
Sbjct: 139 YLAEQ---KFVHRDLAARNCMLDESFTVKVADF 168
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 189 LGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKN 248
L NL N+++N F + LY L+ N+LT +P+E+ NL L LDLS N
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLY---------LNGNSLTE-LPAEIKNLSNLRVLDLSHN 280
Query: 249 SISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLD 300
++ SLP EL L +N + E F L LQ + + GN L+
Sbjct: 281 RLT-SLPAELGSCFQLKYFYFFDNMVTTLPWE--FGNLCNLQFLGVEGNPLE 329
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 119 ALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLL 178
AL + +L+ ++S +I + L+RL YL+GNSL +PA + L L LDLS N L
Sbjct: 228 ALDLSNLQIFNISANI-FKYDFLTRL---YLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282
Query: 179 TGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNAL 226
T +P + L N T +P +L ++QFL + N L
Sbjct: 283 TS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPL 328
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 523 GHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETE 582
G G + G G V +K + S ++ ++ E + +SH +LV L G C +
Sbjct: 26 GQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRP- 84
Query: 583 KLLVYKYMVCGDLASSL----HRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNP 638
++ +YM G L + L HR Q L L++ E + YL +
Sbjct: 85 IFIITEYMANGCLLNYLREMRHRF------QTQQL-----LEMCKDVCEAMEYLE---SK 130
Query: 639 PLVHRDVQASSILLDDKFEVRLGSL 663
+HRD+ A + L++D+ V++
Sbjct: 131 QFLHRDLAARNCLVNDQGVVKVSDF 155
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 523 GHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETE 582
G G + G G V +K + S ++ ++ E + +SH +LV L G C +
Sbjct: 19 GQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRP- 77
Query: 583 KLLVYKYMVCGDLASSL----HRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNP 638
++ +YM G L + L HR Q L L++ E + YL +
Sbjct: 78 IFIITEYMANGCLLNYLREMRHRF------QTQQL-----LEMCKDVCEAMEYLE---SK 123
Query: 639 PLVHRDVQASSILLDDKFEVRLGSL 663
+HRD+ A + L++D+ V++
Sbjct: 124 QFLHRDLAARNCLVNDQGVVKVSDF 148
>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
pdb|2VD5|B Chain B, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
Length = 412
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVP 571
G FSE ++K +G ++ + ++ K+ + F++E D+ R +
Sbjct: 72 GAFSEVAVVKMKQTGQVYAMKIMNKWDML-KRGEVSCFREER-----DVLVN-GDRRWIT 124
Query: 572 LLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSY 631
L + E LV +Y V GDL + L + + + ++ + +AI + L Y
Sbjct: 125 QLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARF-YLAEIVMAIDSVHRLGY 183
Query: 632 LHHECNPPLVHRDVQASSILLDDKFEVRL---GSLSELHAQG 670
VHRD++ +ILLD +RL GS +L A G
Sbjct: 184 ---------VHRDIKPDNILLDRCGHIRLADFGSCLKLRADG 216
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 523 GHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETE 582
G G + G G V +K + S ++ ++ E + +SH +LV L G C + +
Sbjct: 15 GQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK-QRP 73
Query: 583 KLLVYKYMVCGDLASSL----HRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNP 638
++ +YM G L + L HR Q L L++ E + YL +
Sbjct: 74 IFIITEYMANGCLLNYLREMRHRF------QTQQL-----LEMCKDVCEAMEYLE---SK 119
Query: 639 PLVHRDVQASSILLDDKFEVRLGSL 663
+HRD+ A + L++D+ V++
Sbjct: 120 QFLHRDLAARNCLVNDQGVVKVSDF 144
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 499 GDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAG------GTTVVVKKVSLHSFKKE 552
D + ++ A + + + +G G +++G G T V +K V+ + +E
Sbjct: 6 ADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRE 65
Query: 553 --SYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVT-DLEDDS 609
++ E + + +V LLG + L++ + M GDL S L + ++E++
Sbjct: 66 RIEFLNEASVMKEFNCHHVVRLLG-VVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNP 124
Query: 610 LQSLDWITRL-KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ + ++++ ++A A+G++YL+ VHRD+ A + ++ + F V++G
Sbjct: 125 VLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDF 176
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 499 GDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAG------GTTVVVKKVSLHSFKKE 552
D + ++ A + + + +G G +++G G T V +K V+ + +E
Sbjct: 5 ADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRE 64
Query: 553 --SYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVT-DLEDDS 609
++ E + + +V LLG + L++ + M GDL S L + ++E++
Sbjct: 65 RIEFLNEASVMKEFNCHHVVRLLG-VVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNP 123
Query: 610 LQSLDWITRL-KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ + ++++ ++A A+G++YL+ VHRD+ A + ++ + F V++G
Sbjct: 124 VLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDF 175
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 18/160 (11%)
Query: 518 NLIKKGHSGDLFKGTLAGG---TTVVVKKVSLHSFKKE--SYMMELDLFSRV-SHARLVP 571
++I +G+ G + K + +K++ ++ K + + EL++ ++ H ++
Sbjct: 21 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 80
Query: 572 LLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--------SLQSLDWITRLKIAI 623
LLG C EH L +Y G+L L + LE D + +L L A
Sbjct: 81 LLGAC-EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 139
Query: 624 GAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
A G+ YL + +HRD+ A +IL+ + + ++
Sbjct: 140 DVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADF 176
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 499 GDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAG------GTTVVVKKVSLHSFKKE 552
D + ++ A + + + +G G +++G G T V +K V+ + +E
Sbjct: 12 ADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRE 71
Query: 553 --SYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRV-TDLEDDS 609
++ E + + +V LLG + L++ + M GDL S L + ++E++
Sbjct: 72 RIEFLNEASVMKEFNCHHVVRLLG-VVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNP 130
Query: 610 LQSLDWITRL-KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ + ++++ ++A A+G++YL+ VHRD+ A + ++ + F V++G
Sbjct: 131 VLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDF 182
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 499 GDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAG------GTTVVVKKVSLHSFKKE 552
D + ++ A + + + +G G +++G G T V +K V+ + +E
Sbjct: 34 ADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRE 93
Query: 553 --SYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVT-DLEDDS 609
++ E + + +V LLG + L++ + M GDL S L + ++E++
Sbjct: 94 RIEFLNEASVMKEFNCHHVVRLLG-VVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNP 152
Query: 610 LQSLDWITRL-KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ + ++++ ++A A+G++YL+ VHRD+ A + ++ + F V++G
Sbjct: 153 VLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDF 204
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 18/160 (11%)
Query: 518 NLIKKGHSGDLFKGTLAGG---TTVVVKKVSLHSFKKE--SYMMELDLFSRV-SHARLVP 571
++I +G+ G + K + +K++ ++ K + + EL++ ++ H ++
Sbjct: 31 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 90
Query: 572 LLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--------SLQSLDWITRLKIAI 623
LLG C EH L +Y G+L L + LE D + +L L A
Sbjct: 91 LLGAC-EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 149
Query: 624 GAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
A G+ YL + +HRD+ A +IL+ + + ++
Sbjct: 150 DVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADF 186
>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|F Chain F, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|H Chain H, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1IAS|A Chain A, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|B Chain B, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|C Chain C, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|D Chain D, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|E Chain E, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|3FAA|A Chain A, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|B Chain B, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|C Chain C, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|D Chain D, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|E Chain E, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3KCF|A Chain A, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|B Chain B, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|C Chain C, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|D Chain D, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|E Chain E, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|2X7O|A Chain A, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|B Chain B, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|C Chain C, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|D Chain D, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|E Chain E, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
Length = 342
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRV--SHARLVPLLGQCL 577
I KG G++++G G V VK S S ++ S+ E +++ V H ++ +
Sbjct: 50 IGKGRFGEVWRGKWRG-EEVAVKIFS--SREERSWFREAEIYQTVMLRHENILGFIAADN 106
Query: 578 EHE---TEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHH 634
+ T+ LV Y G L L+R T +++ + +K+A+ A GL++LH
Sbjct: 107 KDNGTWTQLWLVSDYHEHGSLFDYLNRYTV----TVEGM-----IKLALSTASGLAHLHM 157
Query: 635 EC-----NPPLVHRDVQASSILL 652
E P + HRD+++ +IL+
Sbjct: 158 EIVGTQGKPAIAHRDLKSKNILV 180
>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With
Inhibitor
Length = 326
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRV--SHARLVPLLGQCL 577
I KG G++++G G V VK S S ++ S+ E +++ V H ++ +
Sbjct: 37 IGKGRFGEVWRGKWRG-EEVAVKIFS--SREERSWFREAEIYQTVMLRHENILGFIAADN 93
Query: 578 EHE---TEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHH 634
+ T+ LV Y G L L+R T +++ + +K+A+ A GL++LH
Sbjct: 94 KDNGTWTQLWLVSDYHEHGSLFDYLNRYTV----TVEGM-----IKLALSTASGLAHLHM 144
Query: 635 EC-----NPPLVHRDVQASSILL 652
E P + HRD+++ +IL+
Sbjct: 145 EIVGTQGKPAIAHRDLKSKNILV 167
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 522 KGHSGDLFKGTLAG------GTTVVVKKVSLHSFKKE--SYMMELDLFSRVSHARLVPLL 573
+G G +++G G T V +K V+ + +E ++ E + + +V LL
Sbjct: 20 QGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL 79
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVT-DLEDDSLQSLDWITRL-KIAIGAAEGLSY 631
G + L++ + M GDL S L + ++E++ + + ++++ ++A A+G++Y
Sbjct: 80 G-VVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAY 138
Query: 632 LHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
L+ VHRD+ A + ++ + F V++G
Sbjct: 139 LNAN---KFVHRDLAARNCMVAEDFTVKIGDF 167
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 499 GDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAG------GTTVVVKKVSLHSFKKE 552
D + ++ A + + + +G G +++G G T V +K V+ + +E
Sbjct: 6 ADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRE 65
Query: 553 --SYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVT-DLEDDS 609
++ E + + +V LLG + L++ + M GDL S L + ++E++
Sbjct: 66 RIEFLNEASVMKEFNCHHVVRLLG-VVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNP 124
Query: 610 LQSLDWITRL-KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ + ++++ ++A A+G++YL+ VHRD+ A + ++ + F V++G
Sbjct: 125 VLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDF 176
>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp
Site Inhibitor
Length = 301
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRV--SHARLVPLLGQCL 577
I KG G++++G G V VK S S ++ S+ E +++ V H ++ +
Sbjct: 12 IGKGRFGEVWRGKWRG-EEVAVKIFS--SREERSWFREAEIYQTVMLRHENILGFIAADN 68
Query: 578 EHE---TEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHH 634
+ T+ LV Y G L L+R T +++ + +K+A+ A GL++LH
Sbjct: 69 KDNGTWTQLWLVSDYHEHGSLFDYLNRYTV----TVEGM-----IKLALSTASGLAHLHM 119
Query: 635 EC-----NPPLVHRDVQASSILL 652
E P + HRD+++ +IL+
Sbjct: 120 EIVGTQGKPAIAHRDLKSKNILV 142
>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3-
Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine
pdb|2WOU|A Chain A, Alk5 In Complex With
4-((4-((2,6-Dimethyl-3-Pyridyl)oxy)-2-
Pyridyl)amino)benzenesulfonamide
Length = 306
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRV--SHARLVPLLGQCL 577
I KG G++++G G V VK S S ++ S+ E +++ V H ++ +
Sbjct: 14 IGKGRFGEVWRGKWRG-EEVAVKIFS--SREERSWFREAEIYQTVMLRHENILGFIAADN 70
Query: 578 EHE---TEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHH 634
+ T+ LV Y G L L+R T +++ + +K+A+ A GL++LH
Sbjct: 71 KDNGTWTQLWLVSDYHEHGSLFDYLNRYTV----TVEGM-----IKLALSTASGLAHLHM 121
Query: 635 EC-----NPPLVHRDVQASSILL 652
E P + HRD+++ +IL+
Sbjct: 122 EIVGTQGKPAIAHRDLKSKNILV 144
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 27/194 (13%)
Query: 467 GIANQRGSANVGPVPEGHSTPPPKDPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSG 526
G+ + + A V EGH P ++ +G G+F + L+KK
Sbjct: 1 GMGSIKEIAITHHVKEGHEKADPSQFELLKVLGQ-----------GSFGKVFLVKKISGS 49
Query: 527 DLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLV 586
D V+KK +L + ME D+ V+H +V L + E + L+
Sbjct: 50 D----ARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKL-HYAFQTEGKLYLI 104
Query: 587 YKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQ 646
++ GDL + L + ++ ++ ++ L +A L +LH + +++RD++
Sbjct: 105 LDFLRGGDLFTRLSKEVMFTEEDVKF--YLAELALA------LDHLH---SLGIIYRDLK 153
Query: 647 ASSILLDDKFEVRL 660
+ILLD++ ++L
Sbjct: 154 PENILLDEEGHIKL 167
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 499 GDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAG------GTTVVVKKVSLHSFKKE 552
D + ++ A + + + +G G +++G G T V +K V+ + +E
Sbjct: 5 ADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRE 64
Query: 553 --SYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVT-DLEDDS 609
++ E + + +V LLG + L++ + M GDL S L + ++E++
Sbjct: 65 RIEFLNEASVMKEFNCHHVVRLLG-VVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNP 123
Query: 610 LQSLDWITRL-KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ + ++++ ++A A+G++YL+ VHRD+ A + ++ + F V++G
Sbjct: 124 VLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDF 175
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 522 KGHSGDLFKGTLAG------GTTVVVKKVSLHSFKKE--SYMMELDLFSRVSHARLVPLL 573
+G G +++G G T V +K V+ + +E ++ E + + +V LL
Sbjct: 22 QGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL 81
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVT-DLEDDSLQSLDWITRL-KIAIGAAEGLSY 631
G + L++ + M GDL S L + ++E++ + + ++++ ++A A+G++Y
Sbjct: 82 G-VVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAY 140
Query: 632 LHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
L+ VHRD+ A + ++ + F V++G
Sbjct: 141 LNAN---KFVHRDLAARNCMVAEDFTVKIGDF 169
>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542
Length = 309
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRV--SHARLVPLLGQCL 577
I KG G++++G G V VK S S ++ S+ E +++ V H ++ +
Sbjct: 17 IGKGRFGEVWRGKWRG-EEVAVKIFS--SREERSWFREAEIYQTVMLRHENILGFIAADN 73
Query: 578 EHE---TEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHH 634
+ T+ LV Y G L L+R T +++ + +K+A+ A GL++LH
Sbjct: 74 KDNGTWTQLWLVSDYHEHGSLFDYLNRYTV----TVEGM-----IKLALSTASGLAHLHM 124
Query: 635 EC-----NPPLVHRDVQASSILL 652
E P + HRD+++ +IL+
Sbjct: 125 EIVGTQGKPAIAHRDLKSKNILV 147
>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human
Tgf- Beta Type I Receptor
pdb|3GXL|A Chain A, Alk-5 Kinase Complex With Gw857175
pdb|3HMM|A Chain A, Structure Of Alk5 + Gw855857
Length = 303
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRV--SHARLVPLLGQCL 577
I KG G++++G G V VK S S ++ S+ E +++ V H ++ +
Sbjct: 11 IGKGRFGEVWRGKWRG-EEVAVKIFS--SREERSWFREAEIYQTVMLRHENILGFIAADN 67
Query: 578 EHE---TEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHH 634
+ T+ LV Y G L L+R T +++ + +K+A+ A GL++LH
Sbjct: 68 KDNGTWTQLWLVSDYHEHGSLFDYLNRYTV----TVEGM-----IKLALSTASGLAHLHM 118
Query: 635 EC-----NPPLVHRDVQASSILL 652
E P + HRD+++ +IL+
Sbjct: 119 EIVGTQGKPAIAHRDLKSKNILV 141
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 496 SGV--GDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKV---SLHSFK 550
SGV G Y Q + F++ I KG G++FKG VV K+ +
Sbjct: 9 SGVDLGTENLYFQSMDPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDE 68
Query: 551 KESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSL 610
E E+ + S+ + G L+ +T+ ++ +Y+ G S+L LE L
Sbjct: 69 IEDIQQEITVLSQCDSPYVTKYYGSYLK-DTKLWIIMEYLGGG---SALDL---LEPGPL 121
Query: 611 QSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L+ + +GL YLH E +HRD++A+++LL + EV+L
Sbjct: 122 DETQIATILREIL---KGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADF 168
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 16/153 (10%)
Query: 515 SETNLIKK---GHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVP 571
E L+K+ G G + G G V VK + S ++ + E ++SH +LV
Sbjct: 8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVK 67
Query: 572 LLGQCLEHETEKLLVYKYMVCGDLASSLH-RVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
G C E +V +Y+ G L + L LE L L++ EG++
Sbjct: 68 FYGVC-SKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQL--------LEMCYDVCEGMA 118
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+L + +HRD+ A + L+D V++
Sbjct: 119 FLE---SHQFIHRDLAARNCLVDRDLCVKVSDF 148
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 514 FSETNLIKKGHSGDLFKGTLAGGTTVVVKKV---SLHSFKKESYMMELDLFSRVSHARLV 570
F++ I KG G++FKG VV K+ + E E+ + S+ +
Sbjct: 24 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 83
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
G L+ +T+ ++ +Y+ G S+L LE L T L+ + +GL
Sbjct: 84 KYYGSYLK-DTKLWIIMEYLGGG---SALDL---LEPGPLDETQIATILREIL---KGLD 133
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YLH E +HRD++A+++LL + EV+L
Sbjct: 134 YLHSEKK---IHRDIKAANVLLSEHGEVKLADF 163
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 18/168 (10%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-ESYMMELDLFSRVSHARLV 570
G + I G G ++KG G V + V+ + ++ +++ E+ + + H ++
Sbjct: 24 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 83
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRV-TDLEDDSLQSLDWITRLKIAIGAAEGL 629
+G + + +V ++ L LH T E L + IA A G+
Sbjct: 84 LFMGYSTKPQLA--IVTQWCEGSSLYHHLHASETKFEMKKL--------IDIARQTARGM 133
Query: 630 SYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL---SELHAQGDSHQ 674
YLH + ++HRD+++++I L + V++G +E SHQ
Sbjct: 134 DYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQ 178
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 204 GQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRN 263
+P+G+ + + Q L L DN +T P L +L LDL N ++ L
Sbjct: 22 ASVPTGIPT--TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 264 LAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFL 309
L +L +++N L+ + G F L L + L N D A L+L
Sbjct: 80 LTQLSLNDNQLKS-IPRGAFDNLRSLTHIWLLNNPWDCACSDILYL 124
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 146 VLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQ 205
VLYL N + P L +L+ LDL N LT L LT+L+L N
Sbjct: 34 VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS- 92
Query: 206 IPSG----LYSLSSIQFLN 220
IP G L SL+ I LN
Sbjct: 93 IPRGAFDNLRSLTHIWLLN 111
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 150 SGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSG 209
SG SLA +VP + ++ L L N +T P L LTRL+L +N T +P+G
Sbjct: 17 SGKSLA-SVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAG 72
Query: 210 LY-SLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKN 248
++ L+ + L+L+DN L NL L + L N
Sbjct: 73 VFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 204 GQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRN 263
+P+G+ + + Q L L DN +T P L +L LDL N ++ L
Sbjct: 30 ASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 264 LAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFL 309
L +L +++N L+ + G F L L + L N D A L+L
Sbjct: 88 LTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCACSDILYL 132
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 146 VLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQ 205
VLYL N + P L +L+ LDL N LT L LT+L+L N
Sbjct: 42 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS- 100
Query: 206 IPSG----LYSLSSIQFLN 220
IP G L SL+ I LN
Sbjct: 101 IPRGAFDNLKSLTHIWLLN 119
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 150 SGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSG 209
SG SLA +VP + ++ L L N +T P L LTRL+L +N T +P+G
Sbjct: 25 SGKSLA-SVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAG 80
Query: 210 LY-SLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKN 248
++ L+ + L+L+DN L NL L + L N
Sbjct: 81 VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-ESYMMELDLFSRVSHARLV 570
G + I G G ++KG G V + V+ + ++ +++ E+ + + H ++
Sbjct: 12 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 71
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRV-TDLEDDSLQSLDWITRLKIAIGAAEGL 629
+G + + +V ++ L LH T E L + IA A G+
Sbjct: 72 LFMGYSTKPQLA--IVTQWCEGSSLYHHLHASETKFEMKKL--------IDIARQTARGM 121
Query: 630 SYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YLH + ++HRD+++++I L + V++G
Sbjct: 122 DYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDF 152
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 93 TLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGN 152
TL++ N S+P IP Q L L + ++ PG F +L L LY + N
Sbjct: 15 TLVNCQNIRLASVPAGIPT-------DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN 67
Query: 153 SLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASN 200
L +L +L+ LDL+ N L A L +LT + L +N
Sbjct: 68 KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 27/181 (14%)
Query: 480 VPEGHSTPPPKDPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTV 539
V EGH P ++ +G G+F + L+KK D +
Sbjct: 15 VKEGHEKADPSQFELLKVLGQ-----------GSFGKVFLVKKISGSDARQLY----AMK 59
Query: 540 VVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSL 599
V+KK +L + ME D+ V+H +V L + E + L+ ++ GDL + L
Sbjct: 60 VLKKATLKVRDRVRTKMERDILVEVNHPFIVKL-HYAFQTEGKLYLILDFLRGGDLFTRL 118
Query: 600 HRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVR 659
+ ++ ++ ++ L +A L +LH + +++RD++ +ILLD++ ++
Sbjct: 119 SKEVMFTEEDVKF--YLAELALA------LDHLH---SLGIIYRDLKPENILLDEEGHIK 167
Query: 660 L 660
L
Sbjct: 168 L 168
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 204 GQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRN 263
+P+G+ + + Q L L DN +T P L +L LDL N ++ L
Sbjct: 22 ASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 264 LAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFL 309
L +L +++N L+ + G F L L + L N D A L+L
Sbjct: 80 LTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCACSDILYL 124
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 146 VLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQ 205
VLYL N + P L +L+ LDL N LT L LT+L+L N
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS- 92
Query: 206 IPSG----LYSLSSIQFLN 220
IP G L SL+ I LN
Sbjct: 93 IPRGAFDNLKSLTHIWLLN 111
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 150 SGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSG 209
SG SLA +VP + ++ L L N +T P L LTRL+L +N T +P+G
Sbjct: 17 SGKSLA-SVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAG 72
Query: 210 LY-SLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKN 248
++ L+ + L+L+DN L NL L + L N
Sbjct: 73 VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 514 FSETNLIKKGHSGDLFKGTLAGGTTVVVKKV---SLHSFKKESYMMELDLFSRVSHARLV 570
F++ I KG G++FKG VV K+ + E E+ + S+ + +
Sbjct: 25 FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSSYVT 84
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
G L+ KL + + G A L R ++ + ++ LK + +GL
Sbjct: 85 KYYGSYLK--GSKLWIIMEYLGGGSALDLLRAGPFDEFQIATM-----LKEIL---KGLD 134
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YLH E +HRD++A+++LL ++ +V+L
Sbjct: 135 YLHSEKK---IHRDIKAANVLLSEQGDVKLADF 164
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 514 FSETNLIKKGHSGDLFKGTLAGGTTVVVKKV---SLHSFKKESYMMELDLFSRVSHARLV 570
F++ I KG G++FKG VV K+ + E E+ + S+ +
Sbjct: 9 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 68
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
G L+ +T+ ++ +Y+ G S+L LE L T L+ + +GL
Sbjct: 69 KYYGSYLK-DTKLWIIMEYLGGG---SALDL---LEPGPLDETQIATILREIL---KGLD 118
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YLH E +HRD++A+++LL + EV+L
Sbjct: 119 YLHSEKK---IHRDIKAANVLLSEHGEVKLADF 148
>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 290
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 15/131 (11%)
Query: 551 KESYMMELDLFSRVSHARLVPLLGQCLEHETEK--LLVYKYMVCGDLASSLHRVTDLEDD 608
+ + E+++ + H +V G C E + EK LV +Y+ G L L R
Sbjct: 54 RSGWQREIEILRTLYHEHIVKYKG-CCEDQGEKSVQLVMEYVPLGSLRDYLPR------- 105
Query: 609 SLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHA 668
+ L A EG++YLH + +HR + A ++LLD+ V++G A
Sbjct: 106 --HCVGLAQLLLFAQQICEGMAYLHAQ---HYIHRALAARNVLLDNDRLVKIGDFGLAKA 160
Query: 669 QGDSHQNVLTR 679
+ H+ R
Sbjct: 161 VPEGHEYYRVR 171
>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 291
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 15/131 (11%)
Query: 551 KESYMMELDLFSRVSHARLVPLLGQCLEHETEK--LLVYKYMVCGDLASSLHRVTDLEDD 608
+ + E+++ + H +V G C E + EK LV +Y+ G L L R
Sbjct: 55 RSGWQREIEILRTLYHEHIVKYKG-CCEDQGEKSVQLVMEYVPLGSLRDYLPR------- 106
Query: 609 SLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHA 668
+ L A EG++YLH + +HR + A ++LLD+ V++G A
Sbjct: 107 --HCVGLAQLLLFAQQICEGMAYLHAQ---HYIHRALAARNVLLDNDRLVKIGDFGLAKA 161
Query: 669 QGDSHQNVLTR 679
+ H+ R
Sbjct: 162 VPEGHEYYRVR 172
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 514 FSETNLIKKGHSGDLFKGTLAGGTTVVVKKV---SLHSFKKESYMMELDLFSRVSHARLV 570
F++ I KG G++FKG VV K+ + E E+ + S+ +
Sbjct: 9 FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 68
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
G L+ +T+ ++ +Y+ G S+L LE L T L+ + +GL
Sbjct: 69 KYYGSYLK-DTKLWIIMEYLGGG---SALDL---LEPGPLDETQIATILREIL---KGLD 118
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YLH E +HRD++A+++LL + EV+L
Sbjct: 119 YLHSEKK---IHRDIKAANVLLSEHGEVKLADF 148
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 514 FSETNLIKKGHSGDLFKGTLAGGTTVVVKKV---SLHSFKKESYMMELDLFSRVSHARLV 570
F++ + I KG G+++KG VV K+ + E E+ + S+ +
Sbjct: 21 FTKLDRIGKGSFGEVYKGIDNHTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYIT 80
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLS 630
G L+ + KL + + G A L + LE+ + + I +GL
Sbjct: 81 RYFGSYLK--STKLWIIMEYLGGGSALDLLKPGPLEETYIAT--------ILREILKGLD 130
Query: 631 YLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
YLH E +HRD++A+++LL ++ +V+L
Sbjct: 131 YLHSERK---IHRDIKAANVLLSEQGDVKLADF 160
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 51/205 (24%)
Query: 152 NSLAGNVPATLGE-LKKLSNLDLSRNLLTGEI----------PNAISL------------ 188
NS VP L + LK L LDLS NL+ E P+ +L
Sbjct: 319 NSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEK 378
Query: 189 -------LGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSD---NALTGFIPSEVGNLD 238
L NLT ++++ N F +P +++LNLS +++TG IP + LD
Sbjct: 379 TGETLLTLKNLTNIDISKNSF-HSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILD 437
Query: 239 --------------KLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFP 284
+L EL +S+N + +LP + L L L IS N L+ + +G+F
Sbjct: 438 VSNNNLNLFSLNLPQLKELYISRNKL-MTLP-DASLLPMLLVLKISRNQLKS-VPDGIFD 494
Query: 285 TLDQLQVVDLSGNKLDGALPATLFL 309
L LQ + L N D + P +L
Sbjct: 495 RLTSLQKIWLHTNPWDCSCPRIDYL 519
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 34/177 (19%)
Query: 127 SCSLSGSIPGSFGNLSRL--------NVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLL 178
SC +G GS G+L+ + L LS N + + L L L L+ N +
Sbjct: 3 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 62
Query: 179 TGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNA------------L 226
++ S LG+L L+L+ N+ + S LSS+ FLNL N L
Sbjct: 63 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 122
Query: 227 TGFIPSEVGNLDK--------------LIELDLSKNSISGSLPLELRGLRNLAKLVI 269
T VGN+D L EL++ + + P L+ ++N++ L++
Sbjct: 123 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 179
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 230 IPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQL 289
IPS G + + LDLS N I+ +L+ NL LV++ NG+ + E F +L L
Sbjct: 20 IPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSL 76
Query: 290 QVVDLSGNKLDGALPATLFLRP--NLRFLDL 318
+ +DLS N L ++ + +P +L FL+L
Sbjct: 77 EHLDLSYNYLSNL--SSSWFKPLSSLTFLNL 105
>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha
(Mrck Alpha)
Length = 437
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 17/152 (11%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVP 571
G F E ++K ++ +F + ++ K+ F++E D+ ++ +
Sbjct: 85 GAFGEVAVVKLKNADKVFAMKILNKWEML-KRAETACFREER-----DVLVN-GDSKWIT 137
Query: 572 LLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSY 631
L + + LV Y V GDL + L + D + + ++ + IAI + L Y
Sbjct: 138 TLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARF-YLAEMVIAIDSVHQLHY 196
Query: 632 LHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
VHRD++ +IL+D +RL
Sbjct: 197 ---------VHRDIKPDNILMDMNGHIRLADF 219
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 522 KGHSGDLFKGT-LAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHE 580
+G G ++K G V +K+V + S +E + E+ + + +V G ++
Sbjct: 39 EGSYGSVYKAIHKETGQIVAIKQVPVESDLQE-IIKEISIMQQCDSPHVVKYYGSYFKN- 96
Query: 581 TEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPL 640
T+ +V +Y CG A S+ + L + +L + T L+ + +GL YLH
Sbjct: 97 TDLWIVMEY--CG--AGSVSDIIRLRNKTLTEDEIATILQSTL---KGLEYLHFMRK--- 146
Query: 641 VHRDVQASSILLDDKFEVRLGSL 663
+HRD++A +ILL+ + +L
Sbjct: 147 IHRDIKAGNILLNTEGHAKLADF 169
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 18/160 (11%)
Query: 518 NLIKKGHSGDLFKGTLAGG---TTVVVKKVSLHSFKKE--SYMMELDLFSRV-SHARLVP 571
++I +G+ G + K + +K++ ++ K + + EL++ ++ H ++
Sbjct: 28 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 87
Query: 572 LLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--------SLQSLDWITRLKIAI 623
LLG C EH L +Y G+L L + LE D + +L L A
Sbjct: 88 LLGAC-EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAA 146
Query: 624 GAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
A G+ YL + +HR++ A +IL+ + + ++
Sbjct: 147 DVARGMDYLSQK---QFIHRNLAARNILVGENYVAKIADF 183
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 20/157 (12%)
Query: 506 QLLRA--TGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSR 563
Q+LR TG+F +LI+ H+G + + VV K H+ E M+ +
Sbjct: 9 QILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHT-NDERLMLSI----- 62
Query: 564 VSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAI 623
V+H ++ + G + + ++ Y+ G+L S L + + + A
Sbjct: 63 VTHPFIIRMWG-TFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFY--------AA 113
Query: 624 GAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
L YLH + +++RD++ +ILLD +++
Sbjct: 114 EVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKI 147
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 185 AISLLGNLTRLNLASNFFTGQIPSGLY-SLSSIQFLNLSDNALTGFIPSEVGNLDKLIEL 243
A+ L NLT L L N +P+G++ L++++ L L +N L L L L
Sbjct: 80 ALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 244 DLSKNSISGSLPLEL-RGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGA 302
L N + SLP + L NL +L + N L+ L EG+F L QL+ + L+ N+L +
Sbjct: 139 YLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQL-KS 195
Query: 303 LPATLFLR 310
+P +F R
Sbjct: 196 VPDGVFDR 203
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 59/147 (40%), Gaps = 9/147 (6%)
Query: 78 GRLNPRFAVDSLGNLTLLSSFNASGLSLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGS 137
+L+ A+ L NLT L SLP + + +L L+ L L L G
Sbjct: 73 NKLHDISALKELTNLTYLILTGNQLQSLPNGVFD----KLTNLKELVLVENQLQSLPDGV 128
Query: 138 FGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNL 197
F L+ L LYL N L +L L+ LDL N L L L +L+L
Sbjct: 129 FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 198 ASNFFTGQIPSGLY----SLSSIQFLN 220
N +P G++ SL+ I LN
Sbjct: 189 NDNQLKS-VPDGVFDRLTSLTHIWLLN 214
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 209 GLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLEL-RGLRNLAKL 267
G+ L ++++L L N L S + L L L L+ N + SLP + L NL +L
Sbjct: 58 GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKEL 114
Query: 268 VISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLR-PNLRFLDLSRNNI 323
V+ EN L+ L +G+F L L + L N+L +LP +F + NL LDL N +
Sbjct: 115 VLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQL 169
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 208 SGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKL 267
S L L+++ +L L+ N L L L EL L +N + L NL L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 268 VISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLR-PNLRFLDLSRNNI 323
+ N L+ L +G+F L L +DL N+L +LP +F + L+ L L+ N +
Sbjct: 139 YLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 20/162 (12%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKES-------YMMEL 558
++L+ T ++ G G ++KG V V++ + + +M E
Sbjct: 10 RILKET-ELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEA 68
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITR 618
+ + + H LV LLG CL + LV + M G L +H D L L+W +
Sbjct: 69 LIMASMDHPHLVRLLGVCLSPTIQ--LVTQLMPHGCLLEYVHEHKDNIGSQL-LLNWCVQ 125
Query: 619 LKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+ A+G+ YL LVHRD+ A ++L+ V++
Sbjct: 126 I------AKGMMYLEER---RLVHRDLAARNVLVKSPNHVKI 158
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK---KESYMMELDLFSRVSHARL 569
+F + + + G+ G +FK + V+ +K+ K + + EL + + +
Sbjct: 69 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 128
Query: 570 VPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGL 629
V G + E + ++M G L L + + + L K++I +GL
Sbjct: 129 VGFYG-AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG--------KVSIAVIKGL 179
Query: 630 SYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+YL + ++HRDV+ S+IL++ + E++L
Sbjct: 180 TYLREKHK--IMHRDVKPSNILVNSRGEIKL 208
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 18/168 (10%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-ESYMMELDLFSRVSHARLV 570
G + I G G ++KG G V + V+ + ++ +++ E+ + + H ++
Sbjct: 24 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 83
Query: 571 PLLGQCLEHETEKLLVYKYMVCGDLASSLHRV-TDLEDDSLQSLDWITRLKIAIGAAEGL 629
+G + +V ++ L LH T E L + IA A G+
Sbjct: 84 LFMGYSTAPQLA--IVTQWCEGSSLYHHLHASETKFEMKKL--------IDIARQTARGM 133
Query: 630 SYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL---SELHAQGDSHQ 674
YLH + ++HRD+++++I L + V++G +E SHQ
Sbjct: 134 DYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQ 178
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 28/175 (16%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAG------GTTVVVK--KVSLHSFKKESYMMELDLFSRV 564
N I +G G +F+ G T V VK K + + + E L +
Sbjct: 48 NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF 107
Query: 565 SHARLVPLLGQCLEHETEKLLVYKYMVCGDL-----ASSLHRVTDLEDDSLQS------- 612
+ +V LLG C + LL ++YM GDL + S H V L L +
Sbjct: 108 DNPNIVKLLGVCAVGKPMCLL-FEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSP 166
Query: 613 ----LDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
L +L IA A G++YL VHRD+ + L+ + V++
Sbjct: 167 GPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKIADF 218
>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue
pdb|2PMN|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp-Site
Inhibitor
pdb|2PMO|X Chain X, Crystal Structure Of Pfpk7 In Complex With Hymenialdisine
Length = 348
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 543 KVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRV 602
K+S+ S K + + EL + + + + + G ++ E ++Y+YM D
Sbjct: 80 KISIKS-KYDDFKNELQIITDIKNEYCLTCEGIITNYD-EVYIIYEYME-NDSILKFDEY 136
Query: 603 TDLEDDSLQSLDWITRLKIAIGAA-EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG 661
+ D + I +K I + SY+H+E N + HRDV+ S+IL+D V+L
Sbjct: 137 FFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKN--ICHRDVKPSNILMDKNGRVKLS 194
Query: 662 SLSELHAQGDS 672
E D
Sbjct: 195 DFGESEYMVDK 205
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 27/181 (14%)
Query: 480 VPEGHSTPPPKDPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTV 539
V EGH P ++ +G G+F + L+KK D
Sbjct: 14 VKEGHEKADPSQFELLKVLGQ-----------GSFGKVFLVKKISGSD----ARQLYAMK 58
Query: 540 VVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSL 599
V+KK +L + ME D+ V+H +V L + E + L+ ++ GDL + L
Sbjct: 59 VLKKATLKVRDRVRTKMERDILVEVNHPFIVKL-HYAFQTEGKLYLILDFLRGGDLFTRL 117
Query: 600 HRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVR 659
+ ++ ++ ++ L +A L +LH + +++RD++ +ILLD++ ++
Sbjct: 118 SKEVMFTEEDVKF--YLAELALA------LDHLH---SLGIIYRDLKPENILLDEEGHIK 166
Query: 660 L 660
L
Sbjct: 167 L 167
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 29/160 (18%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKES-------YMMELDLFSRV 564
G+F + L + GD G V VK S K ES E+++ +
Sbjct: 20 GHFGKVELCRYDPEGD------NTGEQVAVK-----SLKPESGGNHIADLKKEIEILRNL 68
Query: 565 SHARLVPLLGQCLEHETEKL-LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAI 623
H +V G C E + L+ +++ G L L + + ++ +LK A+
Sbjct: 69 YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPK-------NKNKINLKQQLKYAV 121
Query: 624 GAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YL + VHRD+ A ++L++ + +V++G
Sbjct: 122 QICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDF 158
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 542 KKVSLHSFKKES-------YMMELDLFSRVSHARLVPLLGQCLEHETEKL-LVYKYMVCG 593
++V++ S K ES E+++ + H +V G C E + L+ +++ G
Sbjct: 51 EQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSG 110
Query: 594 DLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLD 653
L L + + ++ +LK A+ +G+ YL VHRD+ A ++L++
Sbjct: 111 SLKEYLPK-------NKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVE 160
Query: 654 DKFEVRLGSL 663
+ +V++G
Sbjct: 161 SEHQVKIGDF 170
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 534 AGGTTVVVKKV---SLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKL-LVYKY 589
+ G +V K++ S+ +K+ + E++L + H +V + ++ L +V +Y
Sbjct: 29 SDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEY 88
Query: 590 MVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECN--PPLVHRDVQA 647
GDLAS + + T Q LD L++ L H + ++HRD++
Sbjct: 89 CEGGDLASVITKGTK----ERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKP 144
Query: 648 SSILLDDKFEVRLGSL 663
+++ LD K V+LG
Sbjct: 145 ANVFLDGKQNVKLGDF 160
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 534 AGGTTVVVKKV---SLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKL-LVYKY 589
+ G +V K++ S+ +K+ + E++L + H +V + ++ L +V +Y
Sbjct: 29 SDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEY 88
Query: 590 MVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECN--PPLVHRDVQA 647
GDLAS + + T Q LD L++ L H + ++HRD++
Sbjct: 89 CEGGDLASVITKGTK----ERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKP 144
Query: 648 SSILLDDKFEVRLGSL 663
+++ LD K V+LG
Sbjct: 145 ANVFLDGKQNVKLGDF 160
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 522 KGHSGDLFKGTLAG------GTTVVVKKVSLHSFKKE--SYMMELDLFSRVSHARLVPLL 573
+G G +++G G T V +K V+ + +E ++ E + + +V LL
Sbjct: 22 QGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL 81
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVT-DLEDDSLQSLDWITRL-KIAIGAAEGLSY 631
G + L++ + M GDL S L + ++E++ + + ++++ ++A A+G++Y
Sbjct: 82 G-VVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAY 140
Query: 632 LHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
L+ VHRD+ A + + + F V++G
Sbjct: 141 LNAN---KFVHRDLAARNCXVAEDFTVKIGDF 169
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
Query: 534 AGGTTVVVKKV---SLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKL-LVYKY 589
+ G +V K++ S+ +K+ + E++L + H +V + ++ L +V +Y
Sbjct: 29 SDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEY 88
Query: 590 MVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECN--PPLVHRDVQA 647
GDLAS + + T Q LD L++ L H + ++HRD++
Sbjct: 89 CEGGDLASVITKGTK----ERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKP 144
Query: 648 SSILLDDKFEVRLGSL 663
+++ LD K V+LG
Sbjct: 145 ANVFLDGKQNVKLGDF 160
>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 337
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 28/146 (19%)
Query: 520 IKKGHSGDLFKGTLAGGTTVVVKKVSLHSF---KKESYMMELDLFSRV--SHARLVPLLG 574
I KG G+++ G G +KV++ F ++ S+ E +++ V H ++ +
Sbjct: 45 IGKGRYGEVWMGKWRG------EKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIA 98
Query: 575 QCLE---HETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSY 631
++ T+ L+ Y G L L T LD + LK+A + GL +
Sbjct: 99 ADIKGTGSWTQLYLITDYHENGSLYDYLKSTT---------LDAKSMLKLAYSSVSGLCH 149
Query: 632 LHHEC-----NPPLVHRDVQASSILL 652
LH E P + HRD+++ +IL+
Sbjct: 150 LHTEIFSTQGKPAIAHRDLKSKNILV 175
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 205 QIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNL 264
+IP+ L +I + L N + P KL +DLS N IS P +GLR+L
Sbjct: 25 EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 265 AKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLD 300
LV+ N + +L + LF L LQ++ L+ NK++
Sbjct: 83 NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN 117
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 13/131 (9%)
Query: 536 GTTVVVKKVS---LHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVC 592
G V+K+++ + S ++E E+ + + + H +V + E +V Y
Sbjct: 49 GRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQY-RESFEENGSLYIVMDYCEG 107
Query: 593 GDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILL 652
GDL ++ + Q LDW ++ +A L H + ++HRD+++ +I L
Sbjct: 108 GDLFKRINAQKGVLFQEDQILDWFVQICLA---------LKHVHDRKILHRDIKSQNIFL 158
Query: 653 DDKFEVRLGSL 663
V+LG
Sbjct: 159 TKDGTVQLGDF 169
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 205 QIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNL 264
+IP+ L +I + L N + P KL +DLS N IS P +GLR+L
Sbjct: 25 EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 265 AKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLD 300
LV+ N + +L + LF L LQ++ L+ NK++
Sbjct: 83 NSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN 117
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 243 LDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGA 302
L++S+N IS ++ L L L+IS N ++ L +F +L+ +DLS NKL
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL--- 81
Query: 303 LPATLFLRPNLRFLDLSRNNITGSWPILSTNGNASGAVF 341
+ + NL+ LDLS N + PI GN S F
Sbjct: 82 VKISCHPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKF 119
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 27/145 (18%)
Query: 123 LDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLA--GNVPATLGELKKLSNLDLSRNLLT- 179
LD + L+ ++ + G+L+ L L L N L + ++K L LD+S+N ++
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 180 GEIPNAISLLGNLTRLNLASNFFTG---------------------QIPSGLYSLSSIQF 218
E S +L LN++SN T IP + L ++Q
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQE 448
Query: 219 LNLSDNALTGFIPSEVGNLDKLIEL 243
LN++ N L +P G D+L L
Sbjct: 449 LNVASNQLKS-VPD--GIFDRLTSL 470
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 219 LNLSDNALTGFIPSEVGNLDKLIELDLSKNSIS--GSLPLELRGLRNLAKLVISENGLEG 276
L+ S+N LT + G+L +L L L N + + +++L +L IS+N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 277 QLSEGLFPTLDQLQVVDLSGNKLDGALPATLF--LRPNLRFLDLSRNNI 323
+G L +++S N L T+F L P ++ LDL N I
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSN----ILTDTIFRCLPPRIKVLDLHSNKI 433
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 171 LDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFI 230
+D S+N L +P +S T LN++ N+ + S + SLS ++ L +S N + ++
Sbjct: 5 VDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-QYL 60
Query: 231 PSEVGNLDKLIE-LDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQL 289
V ++ +E LDLS N + + + NL L +S N + F + QL
Sbjct: 61 DISVFKFNQELEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117
Query: 290 QVVDLSGNKLDGA 302
+ + LS L+ +
Sbjct: 118 KFLGLSTTHLEKS 130
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 34/177 (19%)
Query: 127 SCSLSGSIPGSFGNLSRL--------NVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLL 178
SC +G GS G+L+ + L LS N + + L L L L+ N +
Sbjct: 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88
Query: 179 TGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDN------------AL 226
++ S LG+L L+L+ N+ + S LSS+ FLNL N L
Sbjct: 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148
Query: 227 TGFIPSEVGNLDK--------------LIELDLSKNSISGSLPLELRGLRNLAKLVI 269
T VGN+D L EL++ + + P L+ ++N++ L++
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 230 IPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQL 289
IPS G + + LDLS N I+ +L+ NL LV++ NG+ + E F +L L
Sbjct: 46 IPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSL 102
Query: 290 QVVDLSGNKLDGALPATLFLRPNLRFLDL 318
+ +DLS N L + +L FL+L
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK---KESYMMELDLFSRVSHARL 569
+F + + + G+ G +FK + V+ +K+ K + + EL + + +
Sbjct: 7 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 66
Query: 570 VPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGL 629
V G + E + ++M G L L + + + L K++I +GL
Sbjct: 67 VGFYG-AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG--------KVSIAVIKGL 117
Query: 630 SYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+YL + ++HRDV+ S+IL++ + E++L
Sbjct: 118 TYLREKHK--IMHRDVKPSNILVNSRGEIKL 146
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 499 GDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAG------GTTVVVKKVSLHSFKKE 552
D + ++ A + + + +G G +++G G T V +K V+ + +E
Sbjct: 12 ADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRE 71
Query: 553 --SYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLH--RVTDLEDD 608
++ E + + +V LLG + L++ + M GDL S L R +
Sbjct: 72 RIEFLNEASVMKEFNCHHVVRLLG-VVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNP 130
Query: 609 SLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
L +++A A+G++YL+ VHRD+ A + ++ + F V++G
Sbjct: 131 VLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDF 182
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK---KESYMMELDLFSRVSHARL 569
+F + + + G+ G +FK + V+ +K+ K + + EL + + +
Sbjct: 7 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 66
Query: 570 VPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGL 629
V G + E + ++M G L L + + + L K++I +GL
Sbjct: 67 VGFYG-AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG--------KVSIAVIKGL 117
Query: 630 SYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+YL + ++HRDV+ S+IL++ + E++L
Sbjct: 118 TYLREKHK--IMHRDVKPSNILVNSRGEIKL 146
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 35/215 (16%)
Query: 138 FGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNL 197
NL+ LN L LS N+++ + L L L L+ S N +T P ++ L L RL++
Sbjct: 125 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDI 180
Query: 198 ASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIP-----------------SEVG---NL 237
+SN + S L L++++ L ++N ++ P ++G +L
Sbjct: 181 SSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL 238
Query: 238 DKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSE-GLFPTLDQLQVVDLSG 296
L +LDL+ N IS PL GL L +L + N Q+S L L ++L+
Sbjct: 239 TNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN----QISNISPLAGLTALTNLELNE 292
Query: 297 NKLDGALPATLFLRPNLRFLDLSRNNITGSWPILS 331
N+L+ P + NL +L L NNI+ P+ S
Sbjct: 293 NQLEDISPISNL--KNLTYLTLYFNNISDISPVSS 325
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 115 YRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLS 174
+ LP L+ LDLR C+ + P FG + L L L S +P + L +L LDL
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285
Query: 175 RNLLTGEIPNAISLL 189
+ +P+ I+ L
Sbjct: 286 GCVNLSRLPSLIAQL 300
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 22/152 (14%)
Query: 512 GNFSETNLIKK---GHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHAR 568
G+F + L++K SG L+ V+KK +L + ME D+ + V+H
Sbjct: 39 GSFGKVFLVRKVTRPDSGHLY-------AMKVLKKATLKVRDRVRTKMERDILADVNHPF 91
Query: 569 LVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEG 628
+V L + E + L+ ++ GDL + L + ++ ++ ++ L A G
Sbjct: 92 VVKL-HYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKF--YLAEL------ALG 142
Query: 629 LSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
L +LH + +++RD++ +ILLD++ ++L
Sbjct: 143 LDHLH---SLGIIYRDLKPENILLDEEGHIKL 171
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 30/159 (18%)
Query: 526 GDLFKGTLAG-GTTVVVKKVSLHSFK-------KESYMMELDLFSRVSHARLVPLLGQCL 577
G ++KG L G + V++ + K +E + E L +R+ H +V LLG +
Sbjct: 40 GKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLG-VV 98
Query: 578 EHETEKLLVYKYMVCGDLASSL------HRVTDLEDD-----SLQSLDWITRLKIAIGAA 626
+ +++ Y GDL L V +DD +L+ D++ + A
Sbjct: 99 TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFV---HLVAQIA 155
Query: 627 EGLSYL--HHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
G+ YL HH +VH+D+ ++L+ DK V++ L
Sbjct: 156 AGMEYLSSHH-----VVHKDLATRNVLVYDKLNVKISDL 189
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK---KESYMMELDLFSRVSHARL 569
+F + + + G+ G +FK + V+ +K+ K + + EL + + +
Sbjct: 7 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 66
Query: 570 VPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGL 629
V G + E + ++M G L L + + + L K++I +GL
Sbjct: 67 VGFYG-AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG--------KVSIAVIKGL 117
Query: 630 SYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+YL + ++HRDV+ S+IL++ + E++L
Sbjct: 118 TYLREKHK--IMHRDVKPSNILVNSRGEIKL 146
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK---KESYMMELDLFSRVSHARL 569
+F + + + G+ G +FK + V+ +K+ K + + EL + + +
Sbjct: 7 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 66
Query: 570 VPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGL 629
V G + E + ++M G L L + + + L K++I +GL
Sbjct: 67 VGFYG-AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG--------KVSIAVIKGL 117
Query: 630 SYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+YL + ++HRDV+ S+IL++ + E++L
Sbjct: 118 TYLREKHK--IMHRDVKPSNILVNSRGEIKL 146
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK---KESYMMELDLFSRVSHARL 569
+F + + + G+ G +FK + V+ +K+ K + + EL + + +
Sbjct: 10 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 69
Query: 570 VPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGL 629
V G + E + ++M G L L + + + L K++I +GL
Sbjct: 70 VGFYG-AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG--------KVSIAVIKGL 120
Query: 630 SYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+YL + ++HRDV+ S+IL++ + E++L
Sbjct: 121 TYLREKHK--IMHRDVKPSNILVNSRGEIKL 149
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK---KESYMMELDLFSRVSHARL 569
+F + + + G+ G +FK + V+ +K+ K + + EL + + +
Sbjct: 34 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 93
Query: 570 VPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGL 629
V G + E + ++M G L L + + + L K++I +GL
Sbjct: 94 VGFYG-AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG--------KVSIAVIKGL 144
Query: 630 SYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+YL + ++HRDV+ S+IL++ + E++L
Sbjct: 145 TYLREKHK--IMHRDVKPSNILVNSRGEIKL 173
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK---KESYMMELDLFSRVSHARL 569
+F + + + G+ G +FK + V+ +K+ K + + EL + + +
Sbjct: 7 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 66
Query: 570 VPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGL 629
V G + E + ++M G L L + + + L K++I +GL
Sbjct: 67 VGFYG-AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG--------KVSIAVIKGL 117
Query: 630 SYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+YL + ++HRDV+ S+IL++ + E++L
Sbjct: 118 TYLREKHK--IMHRDVKPSNILVNSRGEIKL 146
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 33/167 (19%)
Query: 526 GDLFKGTLAG-GTTVVVKKVSLHSFK-------KESYMMELDLFSRVSHARLVPLLGQCL 577
G ++KG L G + V++ + K +E + E L +R+ H +V LLG +
Sbjct: 23 GKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLG-VV 81
Query: 578 EHETEKLLVYKYMVCGDLASSL------HRVTDLEDD-----SLQSLDWITRLKIAIGAA 626
+ +++ Y GDL L V +DD +L+ D++ + A
Sbjct: 82 TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFV---HLVAQIA 138
Query: 627 EGLSYL--HHECNPPLVHRDVQASSILLDDKFEVR---LGSLSELHA 668
G+ YL HH +VH+D+ ++L+ DK V+ LG E++A
Sbjct: 139 AGMEYLSSHH-----VVHKDLATRNVLVYDKLNVKISDLGLFREVYA 180
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 191 NLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSI 250
++T L L N FT +P L + + ++LS+N ++ N+ +L+ L LS N +
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 251 SGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKL 299
P GL++L L + N + + EG F L L + + N L
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPL 138
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 64/171 (37%), Gaps = 32/171 (18%)
Query: 183 PNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIE 242
P + L + R SN +P G+ + L L N T +P E+ N L
Sbjct: 5 PTECTCLDTVVR---CSNKGLKVLPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHLTL 58
Query: 243 LDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGA 302
+DLS N IS LS F + QL + LS N+L
Sbjct: 59 IDLSNNRIS-------------------------TLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 303 LPATLFLRPNLRFLDLSRNNITGSWPILSTNGNASGAVFNISNNMLYGDLN 353
P T +LR L L N+I+ P + N ++ + I N LY D N
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDCN 143
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 499 GDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAG------GTTVVVKKVSLHSFKKE 552
D + ++ A + + + +G G +++G G T V +K V+ + +E
Sbjct: 2 ADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRE 61
Query: 553 --SYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLH--RVTDLEDD 608
++ E + + +V LLG + L++ + M GDL S L R +
Sbjct: 62 RIEFLNEASVMKEFNCHHVVRLLG-VVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNP 120
Query: 609 SLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
L +++A A+G++YL+ VHRD+ A + ++ + F V++G
Sbjct: 121 VLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDF 172
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 37/178 (20%)
Query: 513 NFSETNLIKKGHSGDLFKGT-LAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVP 571
+F E LI G G +FK G T V+++V ++ K E E+ +++ H +V
Sbjct: 13 DFKEIELIGSGGFGQVFKAKHRIDGKTYVIRRVKYNNEKAER---EVKALAKLDHVNIVH 69
Query: 572 LLG----------------QCLEHETE----------KLLVYKYMVCGDLASSLHRVTDL 605
G + +++ E K L + C +L + +
Sbjct: 70 YNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTKCLFIQMEFCD--KGTLEQW--I 125
Query: 606 EDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
E + LD + L++ +G+ Y+H + L+HRD++ S+I L D +V++G
Sbjct: 126 EKRRGEKLDKVLALELFEQITKGVDYIH---SKKLIHRDLKPSNIFLVDTKQVKIGDF 180
>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil
pdb|3TKU|B Chain B, Mrck Beta In Complex With Fasudil
Length = 433
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
+ + L + E LV Y V GDL + L + D + + +I + +AI +
Sbjct: 149 CQWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMARF-YIGEMVLAIDSI 207
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
L Y VHRD++ ++LLD +RL
Sbjct: 208 HQLHY---------VHRDIKPDNVLLDVNGHIRLADF 235
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 513 NFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK---KESYMMELDLFSRVSHARL 569
+F + + + G+ G +FK + V+ +K+ K + + EL + + +
Sbjct: 26 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 85
Query: 570 VPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGL 629
V G + E + ++M G L L + + + L K++I +GL
Sbjct: 86 VGFYG-AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILG--------KVSIAVIKGL 136
Query: 630 SYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+YL + ++HRDV+ S+IL++ + E++L
Sbjct: 137 TYLREKHK--IMHRDVKPSNILVNSRGEIKL 165
>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide
Substrate Complex: Kinase Substrate Recognition
Length = 277
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 551 KESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSL-HRVTDLEDDS 609
+E+ + E+D+ +VS + L E T LV+ M G+L L +VT E ++
Sbjct: 54 REATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKET 113
Query: 610 LQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+ + + + A+ H+ N +VHRD++ +ILLDD ++L
Sbjct: 114 RKIMRALLEVICAL----------HKLN--IVHRDLKPENILLDDDMNIKL 152
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 25/220 (11%)
Query: 116 RLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSR 175
L L L+L S ++S + L+ L L S N + P L L L LD+S
Sbjct: 127 NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 176 NLLTGEIPNAISLLGNLTRLN--LASNFFTGQI-PSGLYSLSSIQFLNLSDNALTGFIPS 232
N ++ IS+L LT L +A+N I P G+ L+++ L+L+ N L
Sbjct: 183 NKVSD-----ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--G 233
Query: 233 EVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSE-GLFPTLDQLQV 291
+ +L L +LDL+ N IS PL GL L +L + N Q+S L L
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN----QISNISPLAGLTALTN 287
Query: 292 VDLSGNKLDGALPATLFLRPNLRFLDLSRNNITGSWPILS 331
++L+ N+L+ P + NL +L L NNI+ P+ S
Sbjct: 288 LELNENQLEDISPISNL--KNLTYLTLYFNNISDISPVSS 325
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 31/148 (20%)
Query: 258 LRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRP--NLRF 315
RGL +L L + N QL G F L L+V+ L+ LDGA+ + F +P +L
Sbjct: 75 FRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133
Query: 316 LDLSRNNITGSWPILSTNGNASGAVFNISNNMLYGDLNSSSFRKFSLIDLSSNYFQGTVA 375
L L NNI P A F + NM R+F ++DL+ N +
Sbjct: 134 LVLRDNNIKKIQP----------ASFFL--NM----------RRFHVLDLTFNKVKSICE 171
Query: 376 DD----RGRNVSLGRNCLQSVASQRSSE 399
+D +G++ +L R L S+ Q +E
Sbjct: 172 EDLLNFQGKHFTLLR--LSSITLQDMNE 197
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 25/220 (11%)
Query: 116 RLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSR 175
L L L+L S ++S + L+ L L S N + P L L L LD+S
Sbjct: 127 NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 176 NLLTGEIPNAISLLGNLTRLN--LASNFFTGQI-PSGLYSLSSIQFLNLSDNALTGFIPS 232
N ++ IS+L LT L +A+N I P G+ L+++ L+L+ N L
Sbjct: 183 NKVSD-----ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--G 233
Query: 233 EVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSE-GLFPTLDQLQV 291
+ +L L +LDL+ N IS PL GL L +L + N Q+S L L
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN----QISNISPLAGLTALTN 287
Query: 292 VDLSGNKLDGALPATLFLRPNLRFLDLSRNNITGSWPILS 331
++L+ N+L+ P + NL +L L NNI+ P+ S
Sbjct: 288 LELNENQLEDISPISNL--KNLTYLTLYFNNISDISPVSS 325
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 18/164 (10%)
Query: 500 DSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELD 559
D+F + ++L G+F + L + +GDL+ V+ K V L E M E
Sbjct: 23 DNFEFIRVL-GKGSFGKVMLARVKETGDLY------AVKVLKKDVILQDDDVECTMTEKR 75
Query: 560 LFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRL 619
+ S + + L C + V +++ GDL + + ++
Sbjct: 76 ILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDE-----------A 124
Query: 620 KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ AAE +S L + +++RD++ ++LLD + +L
Sbjct: 125 RARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADF 168
>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1
pdb|3QFV|B Chain B, Mrck Beta In Complex With Tpca-1
Length = 415
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
+ + L + E LV Y V GDL + L + D + + +I + +AI +
Sbjct: 133 CQWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMARF-YIGEMVLAIDSI 191
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
L Y VHRD++ ++LLD +RL
Sbjct: 192 HQLHY---------VHRDIKPDNVLLDVNGHIRLADF 219
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 551 KESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSL-HRVTDLEDDS 609
+E+ + E+D+ +VS + L E T LV+ M G+L L +VT E ++
Sbjct: 67 REATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKET 126
Query: 610 LQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+ + + + A+ H+ N +VHRD++ +ILLDD ++L
Sbjct: 127 RKIMRALLEVICAL----------HKLN--IVHRDLKPENILLDDDMNIKL 165
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 551 KESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSL-HRVTDLEDDS 609
+E+ + E+D+ +VS + L E T LV+ M G+L L +VT E ++
Sbjct: 67 REATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKET 126
Query: 610 LQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+ + + + A+ H+ N +VHRD++ +ILLDD ++L
Sbjct: 127 RKIMRALLEVICAL----------HKLN--IVHRDLKPENILLDDDMNIKL 165
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 551 KESYMMELDLFSRVS-HARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDS 609
+E+ E + +V+ H ++ L+ E + LV+ M G+L L L +
Sbjct: 143 REATRRETHILRQVAGHPHIITLID-SYESSSFMFLVFDLMRKGELFDYLTEKVALSEKE 201
Query: 610 LQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+S I E +S+LH +VHRD++ +ILLDD ++RL
Sbjct: 202 TRS--------IMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIRLSDF 244
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 66/157 (42%), Gaps = 13/157 (8%)
Query: 512 GNFSETNLIKKGHSGDLFKGT-LAGGTTVVVKKVSLHSF----KKESYMMELDLFSRVSH 566
NF I +G ++++ L G V +KKV + + + E+DL +++H
Sbjct: 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAA 626
++ +E + E +V + GDL+ + + + W K +
Sbjct: 92 PNVIKYYASFIE-DNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVW----KYFVQLC 146
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
L ++H ++HRD++ +++ + V+LG L
Sbjct: 147 SALEHMHSR---RVMHRDIKPANVFITATGVVKLGDL 180
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 16/156 (10%)
Query: 512 GNFSETNLIKKGHSGD--LFKGTLAGGTTVV--VKKVSLHSFKKESYMMELDLFSRVSHA 567
GN+ I KG+ L + L G V + K L+S + E+ + ++H
Sbjct: 7 GNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHP 66
Query: 568 RLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAE 627
+V L + +E E LV +Y G++ D L + W+ + +
Sbjct: 67 NIVKLF-EVIETEKTLYLVMEYASGGEVF-----------DYLVAHGWMKEKEARAKFRQ 114
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+S + + +VHRD++A ++LLD +++
Sbjct: 115 IVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADF 150
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 512 GNFSETNLIKKGHSGD--LFKGTLAGGTTVV--VKKVSLHSFKKESYMMELDLFSRVSHA 567
GN+ I KG+ L + L G V + K L+S + E+ + ++H
Sbjct: 14 GNYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHP 73
Query: 568 RLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAE 627
+V L + +E E LV +Y G++ L + ++ + + + + A +
Sbjct: 74 NIVKLF-EVIETEKTLYLVMEYASGGEVFDYL-----VAHGRMKEKEARAKFRQIVSAVQ 127
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
Y H + +VHRD++A ++LLD +++
Sbjct: 128 ---YCHQKF---IVHRDLKAENLLLDADMNIKIADF 157
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 512 GNFSETNLIKKGHSGD--LFKGTLAGGTTVV--VKKVSLHSFKKESYMMELDLFSRVSHA 567
GN+ I KG+ L + L G V + K L+S + E+ + ++H
Sbjct: 14 GNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHP 73
Query: 568 RLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAE 627
+V L + +E E LV +Y G++ L + ++ + + + + A +
Sbjct: 74 NIVKLF-EVIETEKTLYLVMEYASGGEVFDYL-----VAHGRMKEKEARAKFRQIVSAVQ 127
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
Y H + +VHRD++A ++LLD +++
Sbjct: 128 ---YCHQKF---IVHRDLKAENLLLDADMNIKIADF 157
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 512 GNFSETNLIKKGHSGD--LFKGTLAGGTTVV--VKKVSLHSFKKESYMMELDLFSRVSHA 567
GN+ I KG+ L + L G V + K L+S + E+ + ++H
Sbjct: 14 GNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHP 73
Query: 568 RLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAE 627
+V L + +E E LV +Y G++ L + ++ + + + + A +
Sbjct: 74 NIVKLF-EVIETEKTLYLVMEYASGGEVFDYL-----VAHGRMKEKEARAKFRQIVSAVQ 127
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
Y H + +VHRD++A ++LLD +++
Sbjct: 128 ---YCHQKF---IVHRDLKAENLLLDADMNIKIADF 157
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 512 GNFSETNLIKKGHSGD--LFKGTLAGGTTVV--VKKVSLHSFKKESYMMELDLFSRVSHA 567
GN+ I KG+ L + L G V + K L+S + E+ + ++H
Sbjct: 14 GNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHP 73
Query: 568 RLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAE 627
+V L + +E E LV +Y G++ L + ++ + + + + A +
Sbjct: 74 NIVKLF-EVIETEKTLYLVMEYASGGEVFDYL-----VAHGRMKEKEARAKFRQIVSAVQ 127
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
Y H + +VHRD++A ++LLD +++
Sbjct: 128 ---YCHQKF---IVHRDLKAENLLLDADMNIKIADF 157
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 512 GNFSETNLIKKGHSGD--LFKGTLAGGTTVV--VKKVSLHSFKKESYMMELDLFSRVSHA 567
GN+ I KG+ L + L G V + K L+S + E+ + ++H
Sbjct: 14 GNYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHP 73
Query: 568 RLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAE 627
+V L + +E E LV +Y G++ L + ++ + + + + A +
Sbjct: 74 NIVKLF-EVIETEKTLYLVMEYASGGEVFDYL-----VAHGRMKEKEARAKFRQIVSAVQ 127
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
Y H + +VHRD++A ++LLD +++
Sbjct: 128 ---YCHQKF---IVHRDLKAENLLLDADMNIKIADF 157
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 23/169 (13%)
Query: 508 LRATGNFSETNLIKKGHSGDLFKGTLA-GGTTVVVKKVSLHSFKKESYMMELDLFSRVSH 566
LR +F E ++ +G G + K A +KK+ K + + E+ L + ++H
Sbjct: 2 LRYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNH 61
Query: 567 ARLVPLLGQCLEH------------ETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLD 614
+V LE ++ + +Y G L +H ++ Q D
Sbjct: 62 QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIH-----SENLNQQRD 116
Query: 615 WITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
RL I E LSY+H + ++HRD++ +I +D+ V++G
Sbjct: 117 EYWRLFRQI--LEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDF 160
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G++ L +++ D ++ +I
Sbjct: 63 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPRGEVYKELQKLSKF--DEQRTATYI 119
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 120 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 157
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G++ L +++ D ++ +I
Sbjct: 63 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPRGEVYKELQKLSKF--DEQRTATYI 119
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 120 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 157
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 32/157 (20%)
Query: 504 YEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSR 563
+E+L TG F + + + +G+ F ++ H KE+ E+ S
Sbjct: 162 HEEL--GTGAFGVVHRVTERATGNNFAAKFV---------MTPHESDKETVRKEIQTMSV 210
Query: 564 VSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDL-----EDDSLQSLDWITR 618
+ H LV L E + E +++Y++M G+L +V D ED++++ + + +
Sbjct: 211 LRHPTLV-NLHDAFEDDNEMVMIYEFMSGGEL---FEKVADEHNKMSEDEAVEYMRQVCK 266
Query: 619 LKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDK 655
GL ++ HE N VH D++ +I+ K
Sbjct: 267 ---------GLCHM-HENN--YVHLDLKPENIMFTTK 291
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 21/174 (12%)
Query: 162 LGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLN--LASNFFTGQI-PSGLYSLSSIQF 218
L L L LD+S N ++ IS+L LT L +A+N I P G+ L+++
Sbjct: 173 LANLTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 225
Query: 219 LNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQL 278
L+L+ N L + +L L +LDL+ N IS PL GL L +L + N Q+
Sbjct: 226 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN----QI 277
Query: 279 SE-GLFPTLDQLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNNITGSWPILS 331
S L L ++L+ N+L+ P + NL +L L NNI+ P+ S
Sbjct: 278 SNISPLAGLTALTNLELNENQLEDISPISNL--KNLTYLTLYFNNISDISPVSS 329
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 40/217 (18%)
Query: 138 FGNLSRLNVLYLSGNSLAG-------------NVPATLGELKKLSNL------DLSRNLL 178
NL+ LN L LS N+++ N + +LK L+NL D+S N +
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV 184
Query: 179 TGEIPNAISLLGNLTRLN--LASNFFTGQI-PSGLYSLSSIQFLNLSDNALTGFIPSEVG 235
+ IS+L LT L +A+N I P G+ L+++ L+L+ N L +
Sbjct: 185 SD-----ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 235
Query: 236 NLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSE-GLFPTLDQLQVVDL 294
+L L +LDL+ N IS PL GL L +L + N Q+S L L ++L
Sbjct: 236 SLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN----QISNISPLAGLTALTNLEL 289
Query: 295 SGNKLDGALPATLFLRPNLRFLDLSRNNITGSWPILS 331
+ N+L+ P + NL +L L NNI+ P+ S
Sbjct: 290 NENQLEDISPISNL--KNLTYLTLYFNNISDISPVSS 324
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 40/217 (18%)
Query: 138 FGNLSRLNVLYLSGNSLAG-------------NVPATLGELKKLSNL------DLSRNLL 178
NL+ LN L LS N+++ N + +LK L+NL D+S N +
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV 184
Query: 179 TGEIPNAISLLGNLTRLN--LASNFFTGQI-PSGLYSLSSIQFLNLSDNALTGFIPSEVG 235
+ IS+L LT L +A+N I P G+ L+++ L+L+ N L +
Sbjct: 185 SD-----ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLA 235
Query: 236 NLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSE-GLFPTLDQLQVVDL 294
+L L +LDL+ N IS PL GL L +L + N Q+S L L ++L
Sbjct: 236 SLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN----QISNISPLAGLTALTNLEL 289
Query: 295 SGNKLDGALPATLFLRPNLRFLDLSRNNITGSWPILS 331
+ N+L+ P + NL +L L NNI+ P+ S
Sbjct: 290 NENQLEDISPISNL--KNLTYLTLYFNNISDISPVSS 324
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 21/174 (12%)
Query: 162 LGELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLN--LASNFFTGQI-PSGLYSLSSIQF 218
L L L LD+S N ++ IS+L LT L +A+N I P G+ L+++
Sbjct: 172 LANLTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 224
Query: 219 LNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQL 278
L+L+ N L + +L L +LDL+ N IS PL GL L +L + N Q+
Sbjct: 225 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN----QI 276
Query: 279 SE-GLFPTLDQLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNNITGSWPILS 331
S L L ++L+ N+L+ P + NL +L L NNI+ P+ S
Sbjct: 277 SNISPLAGLTALTNLELNENQLEDISPISNL--KNLTYLTLYFNNISDISPVSS 328
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 620 KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
K++I GL+YL + ++HRDV+ S+IL++ + E++L
Sbjct: 118 KVSIAVLRGLAYLREKHQ--IMHRDVKPSNILVNSRGEIKL 156
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 84 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 140
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 141 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 178
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 33/177 (18%)
Query: 513 NFSETNLI-----KKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKE--SYMMELD 559
F NL+ +G G + K T AG TTV VK + ++ E + E +
Sbjct: 19 EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFN 78
Query: 560 LFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHR----------------VT 603
+ +V+H ++ L G C + LL+ +Y G L L +
Sbjct: 79 VLKQVNHPHVIKLYGAC-SQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSS 137
Query: 604 DLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
L+ ++L + A ++G+ YL LVHRD+ A +IL+ + ++++
Sbjct: 138 SLDHPDERALTMGDLISFAWQISQGMQYL---AEMKLVHRDLAARNILVAEGRKMKI 191
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E +F + S+ + L C + E+ V +Y+ GDL + R L ++ + +
Sbjct: 102 EKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARF--YS 159
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+ +A L+YLH +++RD++ ++LLD + ++L
Sbjct: 160 AEISLA------LNYLHERG---IIYRDLKLDNVLLDSEGHIKL 194
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 33/177 (18%)
Query: 513 NFSETNLI-----KKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKE--SYMMELD 559
F NL+ +G G + K T AG TTV VK + ++ E + E +
Sbjct: 19 EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFN 78
Query: 560 LFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHR----------------VT 603
+ +V+H ++ L G C + LL+ +Y G L L +
Sbjct: 79 VLKQVNHPHVIKLYGAC-SQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSS 137
Query: 604 DLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
L+ ++L + A ++G+ YL LVHRD+ A +IL+ + ++++
Sbjct: 138 SLDHPDERALTMGDLISFAWQISQGMQYL---AEMKLVHRDLAARNILVAEGRKMKI 191
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 60 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 116
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++ +
Sbjct: 117 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIANF 154
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 84 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 140
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 141 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 178
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 58 EVEIQSHLRHPNILRLYG-YFHDSTRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 114
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 115 TEL------ANALSYCH---SKKVIHRDIKPENLLLGSAGELKIADF 152
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 33/177 (18%)
Query: 513 NFSETNLI-----KKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKE--SYMMELD 559
F NL+ +G G + K T AG TTV VK + ++ E + E +
Sbjct: 19 EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFN 78
Query: 560 LFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHR----------------VT 603
+ +V+H ++ L G C + LL+ +Y G L L +
Sbjct: 79 VLKQVNHPHVIKLYGAC-SQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSS 137
Query: 604 DLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
L+ ++L + A ++G+ YL LVHRD+ A +IL+ + ++++
Sbjct: 138 SLDHPDERALTMGDLISFAWQISQGMQYL---AEMSLVHRDLAARNILVAEGRKMKI 191
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 61 EVEIQSHLRHPNILRLYGY-FHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 117
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 118 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 155
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 75 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 131
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 132 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 169
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 112 WFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLA-GNVPATLGELKKLSN 170
W + L A+ VL + CS S+ + G S + ++P+ G + +
Sbjct: 6 WLFWILVAITVLFSKRCSAQESLSCDASGVC-------DGRSRSFTSIPS--GLTAAMKS 56
Query: 171 LDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFI 230
LDLS N +T + NL L L S+ YSL S++ L+LSDN L+
Sbjct: 57 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 116
Query: 231 PSEVGNLDKLIELDLSKN 248
S G L L L+L N
Sbjct: 117 SSWFGPLSSLKYLNLMGN 134
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 39/178 (21%)
Query: 152 NSLAGNVPATLGE-LKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGL 210
NS VP + + LK L LDLS NL+ E L ++ G P
Sbjct: 345 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY--------------LKNSACKGAWP--- 387
Query: 211 YSLSSIQFLNLSDNAL-----TGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLA 265
S+Q L LS N L TG I + L L LD+S+N+ +P + +
Sbjct: 388 ----SLQTLVLSQNHLRSMQKTGEI---LLTLKNLTSLDISRNTF-HPMPDSCQWPEKMR 439
Query: 266 KLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNNI 323
L +S G+ ++ + P L+V+D+S N LD +LFL P L+ L +SRN +
Sbjct: 440 FLNLSSTGI--RVVKTCIP--QTLEVLDVSNNNLDS---FSLFL-PRLQELYISRNKL 489
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 21/140 (15%)
Query: 203 TGQIPSGLYSLSSIQFLNLSDNAL---------TGFIPSEVGNLDKLIELDLSKNSISGS 253
G +PS L SL +++ L+LSDN L G + + +L+KL +L+ + + +
Sbjct: 98 CGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQC-HLEKL-QLEYCRLTAASC 155
Query: 254 LPLE--LRGLRNLAKLVISEN--GLEGQ--LSEGLFPTLDQLQVVDLSGNKLDGA----L 303
PL LR R L +L +S N G G L +GL + QL+ + L L A L
Sbjct: 156 EPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDL 215
Query: 304 PATLFLRPNLRFLDLSRNNI 323
+ + +LR LDL N +
Sbjct: 216 CGIVASQASLRELDLGSNGL 235
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 58 EVEIQSHLRHPNILRLYGY-FHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 114
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 115 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 59 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 115
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 116 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 153
>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
pdb|3LL6|B Chain B, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
Length = 337
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
T LKI + ++H + PP++HRD++ ++LL ++ ++L
Sbjct: 137 TVLKIFYQTCRAVQHMHRQ-KPPIIHRDLKVENLLLSNQGTIKL 179
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E +F + S+ + L C + E+ V +Y+ GDL + R L ++ + +
Sbjct: 59 EKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARF--YS 116
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+ +A L+YLH +++RD++ ++LLD + ++L
Sbjct: 117 AEISLA------LNYLHERG---IIYRDLKLDNVLLDSEGHIKL 151
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 504 YEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSR 563
+E+L TG F + + + +G+ F ++ H KE+ E+ S
Sbjct: 56 HEEL--GTGAFGVVHRVTERATGNNFAAKFV---------MTPHESDKETVRKEIQTMSV 104
Query: 564 VSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAI 623
+ H LV L E + E +++Y++M G+L +V D E + + + + ++
Sbjct: 105 LRHPTLVNL-HDAFEDDNEMVMIYEFMSGGEL---FEKVAD-EHNKMSEDEAVEYMR--- 156
Query: 624 GAAEGLSYLHHECNPPLVHRDVQASSILLDDK 655
+GL ++ HE N VH D++ +I+ K
Sbjct: 157 QVCKGLCHM-HENN--YVHLDLKPENIMFTTK 185
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 61 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 117
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++ +
Sbjct: 118 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIANF 155
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 63 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 119
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 120 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 157
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 58 EVEIQSHLRHPNILRLYGY-FHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 114
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 115 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 63 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 119
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 120 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 157
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 19/178 (10%)
Query: 478 GPVPEGHSTPPPKDPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGT 537
GP H+TP + D + +++L G+F E L K +G
Sbjct: 28 GPGDHLHATPGMFVQHSTAIFSDRYKGQRVL-GKGSFGEVILCKDKITGQ------ECAV 80
Query: 538 TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLAS 597
V+ K+ KES + E+ L ++ H ++ L + E + LV + G+L
Sbjct: 81 KVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLY-EFFEDKGYFYLVGEVYTGGELFD 139
Query: 598 SLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDK 655
+ S + + +I G++Y+H +VHRD++ ++LL+ K
Sbjct: 140 EII--------SRKRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESK 186
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 22/172 (12%)
Query: 508 LRATGNFSETNLIKKGHSGDLFKG-TLAGGTTVVVKKVSLHSFK--KESYMMELDLFSRV 564
+ ++ F + + G ++KG G V +K+V L S + + + E+ L +
Sbjct: 1 MSSSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKEL 60
Query: 565 SHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVT------DLEDDSLQSLDWITR 618
H +V L + E + LV+++M DL + T LE + ++ W
Sbjct: 61 KHENIVRLY-DVIHTENKLTLVFEFM-DNDLKKYMDSRTVGNTPRGLELNLVKYFQW--- 115
Query: 619 LKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHAQG 670
+GL++ H ++HRD++ ++L++ + +++LG A G
Sbjct: 116 -----QLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 19/178 (10%)
Query: 478 GPVPEGHSTPPPKDPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGT 537
GP H+TP + D + +++L G+F E L K +G
Sbjct: 27 GPGDHLHATPGMFVQHSTAIFSDRYKGQRVL-GKGSFGEVILCKDKITGQ------ECAV 79
Query: 538 TVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLAS 597
V+ K+ KES + E+ L ++ H ++ L + E + LV + G+L
Sbjct: 80 KVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLY-EFFEDKGYFYLVGEVYTGGELFD 138
Query: 598 SLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDK 655
+ S + + +I G++Y+H +VHRD++ ++LL+ K
Sbjct: 139 EII--------SRKRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESK 185
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E +F + S+ + L C + E+ V +Y+ GDL + R L ++ + +
Sbjct: 70 EKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARF--YS 127
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+ +A L+YLH +++RD++ ++LLD + ++L
Sbjct: 128 AEISLA------LNYLHERG---IIYRDLKLDNVLLDSEGHIKL 162
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 60 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 116
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 117 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 154
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 63 EVEIQSHLRHPNILRLYGY-FHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 119
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 120 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 157
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 59 EVEIQSHLRHPNILRLYGY-FHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 115
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 116 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 153
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 59 EVEIQSHLRHPNILRLYGY-FHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 115
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 116 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 153
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 61 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 117
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 118 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 155
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E +F + S+ + L C + E+ V +Y+ GDL + R L ++ + +
Sbjct: 55 EKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARF--YS 112
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+ +A L+YLH +++RD++ ++LLD + ++L
Sbjct: 113 AEISLA------LNYLHERG---IIYRDLKLDNVLLDSEGHIKL 147
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 511 TGNFSETNLIKK--GH-SGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHA 567
TG + + L++K GH +G L+ + T+V K + + E ++E H
Sbjct: 64 TGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE--------HI 115
Query: 568 RLVPLL---GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIG 624
R P L + ET+ L+ Y+ G+L + L + T ++ I
Sbjct: 116 RQSPFLVTLHYAFQTETKLHLILDYINGGELFTHL-----------SQRERFTEHEVQIY 164
Query: 625 AAEGLSYLHHECNPPLVHRDVQASSILLD 653
E + L H +++RD++ +ILLD
Sbjct: 165 VGEIVLALEHLHKLGIIYRDIKLENILLD 193
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 62 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 118
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 119 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 156
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 58 EVEIQSHLRHPNILRLYGY-FHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 114
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 115 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 512 GNFSETNLIKKGHSGD--LFKGTLAGGTTVV--VKKVSLHSFKKESYMMELDLFSRVSHA 567
GN+ I KG+ L + L G V + K L+ + E+ + ++H
Sbjct: 15 GNYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQLNPTSLQKLFREVRIMKILNHP 74
Query: 568 RLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAE 627
+V L + +E E LV +Y G++ L + ++ + + + + A +
Sbjct: 75 NIVKLF-EVIETEKTLYLVMEYASGGEVFDYL-----VAHGRMKEKEARAKFRQIVSAVQ 128
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
Y H + +VHRD++A ++LLD +++
Sbjct: 129 ---YCHQKY---IVHRDLKAENLLLDGDMNIKIADF 158
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 28/172 (16%)
Query: 507 LLRATGNFSETNLIKKGHSGDLFKGT--LAGGTTVVVKKVS---------LHSFKKESYM 555
L RA + I +G G +FK GG V +K+V L + ++ + +
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65
Query: 556 MELDLFSRVSHARLVPLLGQCL----EHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQ 611
L+ F H +V L C + ET+ LV+++ V DL + L +V + +
Sbjct: 66 RHLETFE---HPNVVRLFDVCTVSRTDRETKLTLVFEH-VDQDLTTYLDKVPEPGVPTET 121
Query: 612 SLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
D + +L GL +LH +VHRD++ +IL+ +++L
Sbjct: 122 IKDMMFQL------LRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADF 164
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 533 LAGGTTVVVKKV--SLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYM 590
+ G + VK++ +++S +++ +M+LD+ R L E + + + M
Sbjct: 73 VPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELM 132
Query: 591 VCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSI 650
+SL + D Q++ KIA+ + L +LH + + ++HRDV+ S++
Sbjct: 133 -----DTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS--VIHRDVKPSNV 185
Query: 651 LLDDKFEVRL 660
L++ +V++
Sbjct: 186 LINALGQVKM 195
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 58 EVEIQSHLRHPNILRLYGY-FHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 114
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 115 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 23/181 (12%)
Query: 152 NSLAGNVPATLGE-LKKLSNLDLSRNLLTGEIPNAISLLG---NLTRLNLASNFFTGQIP 207
NS VP + + LK L LDLS NL+ E + G +L L L+ N
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378
Query: 208 SG--LYSLSSIQFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSI---SGSLPLELRGLR 262
+G L +L ++ L++S N +P +K+ L+LS I +P +
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKTCIP------Q 431
Query: 263 NLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLRPNLRFLDLSRNN 322
L L +S N L+ S LF L +LQ + +S NKL A+LF P L + +SRN
Sbjct: 432 TLEVLDVSNNNLD---SFSLF--LPRLQELYISRNKLKTLPDASLF--PVLLVMKISRNQ 484
Query: 323 I 323
+
Sbjct: 485 L 485
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%)
Query: 163 GELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLS 222
G + +LDLS N +T + NL L L S+ YSL S++ L+LS
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 223 DNALTGFIPSEVGNLDKLIELDLSKN 248
DN L+ S G L L L+L N
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 539 VVVKKVSLHSFKK--ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLA 596
V +K+++L + + + E+ S+ H +V + + E LV K + G +
Sbjct: 38 VAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKD-ELWLVMKLLSGGSVL 96
Query: 597 SSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKF 656
+ + + LD T I EGL YLH +HRDV+A +ILL +
Sbjct: 97 DIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQ---IHRDVKAGNILLGEDG 153
Query: 657 EVRLGSL 663
V++
Sbjct: 154 SVQIADF 160
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 620 KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
K+ + + L YL + ++HRDV+ S+ILLD++ +++L
Sbjct: 128 KMTVAIVKALYYLKEKHG--VIHRDVKPSNILLDERGQIKL 166
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 21/168 (12%)
Query: 508 LRATGNFSETNLIKKGHSGDLFKGTLA-GGTTVVVKKVSLHSFKKESYMMELDLFSRVSH 566
LR +F E ++ +G G + K A +KK+ K + + E+ L + ++H
Sbjct: 2 LRYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNH 61
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLH-RVTDLEDDSL----------QSLDW 615
+V LE K M S+L ++ E+ +L Q D
Sbjct: 62 QYVVRYYAAWLERRN----FVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENLNQQRDE 117
Query: 616 ITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
RL I E LSY+H + ++HRD++ +I +D+ V++G
Sbjct: 118 YWRLFRQI--LEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDF 160
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 61 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 117
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 118 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 155
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 547 HSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLE 606
H ES+ + S++SH LV G C+ + E +LV +++ G L + L +
Sbjct: 52 HRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGD-ENILVQEFVKFGSLDTYLKK----- 105
Query: 607 DDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILL 652
+ ++ + +L++A A + +L L+H +V A +ILL
Sbjct: 106 --NKNCINILWKLEVAKQLAAAMHFLEENT---LIHGNVCAKNILL 146
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 539 VVVKKVSLHSFKK--ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLA 596
V +K+++L + + + E+ S+ H +V + + E LV K + G +
Sbjct: 43 VAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKD-ELWLVMKLLSGGSVL 101
Query: 597 SSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKF 656
+ + + LD T I EGL YLH +HRDV+A +ILL +
Sbjct: 102 DIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQ---IHRDVKAGNILLGEDG 158
Query: 657 EVRLGSL 663
V++
Sbjct: 159 SVQIADF 165
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 58 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 114
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 115 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 507 LLRATGNFSETNLIKKGHSGDLFKGT--LAGGTTVVVKKVS---------LHSFKKESYM 555
L RA + I +G G +FK GG V +K+V L + ++ + +
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65
Query: 556 MELDLFSRVSHARLVPLLGQCL----EHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQ 611
L+ F H +V L C + ET+ LV+++ V DL + L +V + +
Sbjct: 66 RHLETFE---HPNVVRLFDVCTVSRTDRETKLTLVFEH-VDQDLTTYLDKVPEPGVPTET 121
Query: 612 SLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
D + +L GL +LH + +VHRD++ +IL+ +++L
Sbjct: 122 IKDMMFQL------LRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADF 164
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 58 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 114
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 115 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 57 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 113
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 114 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 151
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 58 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 114
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 115 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 152
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 507 LLRATGNFSETNLIKKGHSGDLFKGT--LAGGTTVVVKKVS---------LHSFKKESYM 555
L RA + I +G G +FK GG V +K+V L + ++ + +
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65
Query: 556 MELDLFSRVSHARLVPLLGQCL----EHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQ 611
L+ F H +V L C + ET+ LV+++ V DL + L +V + +
Sbjct: 66 RHLETFE---HPNVVRLFDVCTVSRTDRETKLTLVFEH-VDQDLTTYLDKVPEPGVPTET 121
Query: 612 SLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
D + +L GL +LH + +VHRD++ +IL+ +++L
Sbjct: 122 IKDMMFQL------LRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADF 164
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 613 LDWITRLKIAIGAAEGLSYLHHEC-------NPPLVHRDVQASSILLDDKFEVRLG---- 661
+ W IA A GL+YLH + P + HRD+++ ++LL + +
Sbjct: 118 VSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGL 177
Query: 662 --SLSELHAQGDSHQNVLTR 679
+ GD+H V TR
Sbjct: 178 ALKFEAGKSAGDTHGQVGTR 197
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 55 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 111
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 112 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 149
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 7 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 65
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 66 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 120
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ AEG++YL + LVHRD+ A ++L+ V++ E
Sbjct: 121 VQI------AEGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 171
Query: 667 HAQG 670
HA+G
Sbjct: 172 HAEG 175
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 15/144 (10%)
Query: 523 GHSGDLFKGTLAGGTTVVVKKV--SLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHE 580
G G ++K + + KV + + E YM+E+D+ + H +V LL +E
Sbjct: 21 GDFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLD-AFYYE 79
Query: 581 TEKLLVYKYMVCGDL-ASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPP 639
++ ++ G + A L L + +Q + + L+YLH +
Sbjct: 80 NNLWILIEFCAGGAVDAVMLELERPLTESQIQV--------VCKQTLDALNYLH---DNK 128
Query: 640 LVHRDVQASSILLDDKFEVRLGSL 663
++HRD++A +IL +++L
Sbjct: 129 IIHRDLKAGNILFTLDGDIKLADF 152
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 61 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 117
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 118 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 155
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 61 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSKF--DEQRTATYI 117
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 118 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADF 155
>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
pdb|1JCN|B Chain B, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
Length = 514
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 594 DLASSLHRVTDLEDDSLQS-LDWITRLKIAIGAA--EGLSYLHHECNPPLVHRDVQ 646
DL S+L R L+ + S +D +T +AI A G+ ++HH C P +V+
Sbjct: 50 DLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQANEVR 105
>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
Length = 442
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSE---LHAQGDSHQNVLTRFLWRQ 684
GL Y+H + ++HRD++ S++L+++ E+++G L HQ +T ++ +
Sbjct: 171 GLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATR 227
Query: 685 LYQS 688
Y++
Sbjct: 228 WYRA 231
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 11 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 69
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 70 YVMASVDNPHVCRLLGICLTSTVQ--LIMQLMPFGXL---LDYVREHKDNIGSQYLLNWC 124
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 125 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 175
Query: 667 HAQG 670
HA+G
Sbjct: 176 HAEG 179
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 74/178 (41%), Gaps = 8/178 (4%)
Query: 132 GSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGN 191
+P S +R L L NS+ T L+ L L LS+NL+ A + L +
Sbjct: 27 AEVPASIPVNTR--YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 192 LTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGN-LDKLIELDLSK-NS 249
L L L N T LS ++ L L +N + IPS N + L LDL +
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKR 143
Query: 250 ISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATL 307
+ GL NL L + L+ + L +L+ ++LSGN+LD P +
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKDIPN---LTALVRLEELELSGNRLDLIRPGSF 198
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 217 QFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEG 276
++LNL +N++ +L L L LSKN + GL +L L + +N L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 277 QLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLR-PNLRFLDL 318
++ F L +L+ + L N ++ ++P+ F R P+LR LDL
Sbjct: 98 VPTQA-FEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDL 138
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%)
Query: 117 LPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRN 176
L L+ L+L L PGSF L+ L L+L +A +LK L L+LS N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 177 LLTGEIPNAISLLGNLTRLNLASN 200
L + + L L R++L N
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 15/144 (10%)
Query: 523 GHSGDLFKGTLAGGTTVVVKKV--SLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHE 580
G G ++K + + KV + + E YM+E+D+ + H +V LL +E
Sbjct: 48 GAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLL-DAFYYE 106
Query: 581 TEKLLVYKYMVCGDL-ASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPP 639
++ ++ G + A L L + +Q + + L+YLH +
Sbjct: 107 NNLWILIEFCAGGAVDAVMLELERPLTESQIQV--------VCKQTLDALNYLH---DNK 155
Query: 640 LVHRDVQASSILLDDKFEVRLGSL 663
++HRD++A +IL +++L
Sbjct: 156 IIHRDLKAGNILFTLDGDIKLADF 179
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 15/144 (10%)
Query: 523 GHSGDLFKGTLAGGTTVVVKKV--SLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHE 580
G G ++K + + KV + + E YM+E+D+ + H +V LL +E
Sbjct: 48 GAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLL-DAFYYE 106
Query: 581 TEKLLVYKYMVCGDL-ASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPP 639
++ ++ G + A L L + +Q + + L+YLH +
Sbjct: 107 NNLWILIEFCAGGAVDAVMLELERPLTESQIQV--------VCKQTLDALNYLH---DNK 155
Query: 640 LVHRDVQASSILLDDKFEVRLGSL 663
++HRD++A +IL +++L
Sbjct: 156 IIHRDLKAGNILFTLDGDIKLADF 179
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 62 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSRF--DEQRTATYI 118
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 119 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSNGELKIADF 156
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 17 RILKET-EFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 75
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 76 YVMASVDNPHVCRLLGICLTSTVQ--LIMQLMPFGCL---LDYVREHKDNIGSQYLLNWC 130
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 131 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 181
Query: 667 HAQG 670
HA+G
Sbjct: 182 HAEG 185
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 620 KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHA--QGDSH 673
+ A+ AEG+ YL + +HRD+ A ++LL + V++G + A Q D H
Sbjct: 119 RYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH 171
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 27/161 (16%)
Query: 514 FSETNLIKKGHSGDLFKGTLAGGTTVV-VKKVSL--HSFKKE----SYMMELDLFSRVSH 566
+ + + + +G ++K +V +KK+ L S K+ + + E+ L +SH
Sbjct: 12 YEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH 71
Query: 567 ARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLE----DDSLQSLDWITRLKIA 622
++ LL H++ LV+ +M TDLE D+SL + +
Sbjct: 72 PNIIGLL-DAFGHKSNISLVFDFME-----------TDLEVIIKDNSLVLTPSHIKAYML 119
Query: 623 IGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ +GL YLH ++HRD++ +++LLD+ ++L
Sbjct: 120 M-TLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADF 156
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 15/144 (10%)
Query: 523 GHSGDLFKGTLAGGTTVVVKKV--SLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHE 580
G G ++K + + KV + + E YM+E+D+ + H +V LL +E
Sbjct: 48 GAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLL-DAFYYE 106
Query: 581 TEKLLVYKYMVCGDL-ASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPP 639
++ ++ G + A L L + +Q + + L+YLH +
Sbjct: 107 NNLWILIEFCAGGAVDAVMLELERPLTESQIQV--------VCKQTLDALNYLH---DNK 155
Query: 640 LVHRDVQASSILLDDKFEVRLGSL 663
++HRD++A +IL +++L
Sbjct: 156 IIHRDLKAGNILFTLDGDIKLADF 179
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E+++ S + H ++ L G T L+ +Y G + L +++ D ++ +I
Sbjct: 62 EVEIQSHLRHPNILRLYG-YFHDATRVYLILEYAPLGTVYRELQKLSRF--DEQRTATYI 118
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
T L A LSY H + ++HRD++ ++LL E+++
Sbjct: 119 TEL------ANALSYCH---SKRVIHRDIKPENLLLGSNGELKIADF 156
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 537 TTVVVKKV-SLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDL 595
T V++K + H ES+ + S++SH LV G C + E +LV +++ G L
Sbjct: 41 TEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCFCGD-ENILVQEFVKFGSL 99
Query: 596 ASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILL 652
+ L + + ++ + +L++A A + +L L+H +V A +ILL
Sbjct: 100 DTYLKK-------NKNCINILWKLEVAKQLAWAMHFLEENT---LIHGNVCAKNILL 146
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 20/140 (14%)
Query: 534 AGGTTVVVKKV---SLHSFKKESYMMELDLFSRVSHA-RLVPLLGQCLEHETEKLLVYKY 589
A TV VK + + HS + + M EL + + H +V LLG C + +++ ++
Sbjct: 57 ATXRTVAVKMLKEGATHS-EHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 115
Query: 590 MVCGDLASSL---------HRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPL 640
G+L++ L ++ DL D L +L+ + + + A+G+ +L +
Sbjct: 116 CKFGNLSTYLRSKRNEFVPYKPEDLYKDFL-TLEHL--IXYSFQVAKGMEFL---ASRKX 169
Query: 641 VHRDVQASSILLDDKFEVRL 660
+HRD+ A +ILL +K V++
Sbjct: 170 IHRDLAARNILLSEKNVVKI 189
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 620 KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHA--QGDSH 673
+ A+ AEG+ YL + +HRD+ A ++LL + V++G + A Q D H
Sbjct: 119 RYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH 171
>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
Length = 398
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSE---LHAQGDSHQNVLTRFLWRQ 684
GL Y+H + ++HRD++ S++L+++ E+++G L HQ +T ++ +
Sbjct: 170 GLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATR 226
Query: 685 LYQS 688
Y++
Sbjct: 227 WYRA 230
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 17 RILKET-EFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 75
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 76 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 130
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 131 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 181
Query: 667 HAQG 670
HA+G
Sbjct: 182 HAEG 185
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 620 KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHA--QGDSH 673
+ A+ AEG+ YL + +HRD+ A ++LL + V++G + A Q D H
Sbjct: 115 RYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH 167
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 518 NLIK--KGHSGDLFKGTL-AGGTTVVVKKVSLHSFKKESYMM-ELDLFSRVSHARLVPLL 573
N IK +G +G + T+ + G V VKK+ L ++ + E+ + H +V +
Sbjct: 155 NFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY 214
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
L + E +V +++ G L TD+ + + + I + +A+ + LS LH
Sbjct: 215 NSYLVGD-ELWVVMEFLEGGAL-------TDIVTHTRMNEEQIAAVCLAV--LQALSVLH 264
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRL 660
+ ++HRD+++ SILL V+L
Sbjct: 265 AQG---VIHRDIKSDSILLTHDGRVKL 288
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 620 KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHA--QGDSH 673
+ A+ AEG+ YL + +HRD+ A ++LL + V++G + A Q D H
Sbjct: 115 RYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH 167
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 620 KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHA--QGDSH 673
+ A+ AEG+ YL + +HRD+ A ++LL + V++G + A Q D H
Sbjct: 115 RYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH 167
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 518 NLIK--KGHSGDLFKGTL-AGGTTVVVKKVSLHSFKKESYMM-ELDLFSRVSHARLVPLL 573
N IK +G +G + T+ + G V VKK+ L ++ + E+ + H +V +
Sbjct: 78 NFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY 137
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
L + E +V +++ G L TD+ + + + I + +A+ + LS LH
Sbjct: 138 NSYLVGD-ELWVVMEFLEGGAL-------TDIVTHTRMNEEQIAAVCLAV--LQALSVLH 187
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRL 660
+ ++HRD+++ SILL V+L
Sbjct: 188 AQG---VIHRDIKSDSILLTHDGRVKL 211
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 620 KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHA--QGDSH 673
+ A+ AEG+ YL + +HRD+ A ++LL + V++G + A Q D H
Sbjct: 125 RYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH 177
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 620 KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSELHA--QGDSH 673
+ A+ AEG+ YL + +HRD+ A ++LL + V++G + A Q D H
Sbjct: 125 RYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH 177
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 12 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 71 YVMASVDNPHVCRLLGICLTSTVQ--LIMQLMPFGCL---LDYVREHKDNIGSQYLLNWC 125
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 126 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEY 176
Query: 667 HAQG 670
HA+G
Sbjct: 177 HAEG 180
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 512 GNFSETNLIKKGHSGD--LFKGTLAGGTTVV--VKKVSLHSFKKESYMMELDLFSRVSHA 567
GN+ I KG+ L + L G V + K L+S + E+ + ++H
Sbjct: 14 GNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIXKVLNHP 73
Query: 568 RLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAE 627
+V L + +E E LV +Y G++ L + + + + + + A +
Sbjct: 74 NIVKLF-EVIETEKTLYLVXEYASGGEVFDYL-----VAHGRXKEKEARAKFRQIVSAVQ 127
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
Y H + +VHRD++A ++LLD +++
Sbjct: 128 ---YCHQKF---IVHRDLKAENLLLDADXNIKIADF 157
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 14 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 72
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 73 YVMASVDNPHVCRLLGICLTSTVQ--LIMQLMPFGCL---LDYVREHKDNIGSQYLLNWC 127
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 128 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 178
Query: 667 HAQG 670
HA+G
Sbjct: 179 HAEG 182
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 12 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 71 YVMASVDNPHVCRLLGICLTSTVQ--LIMQLMPFGCL---LDYVREHKDNIGSQYLLNWC 125
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 126 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEY 176
Query: 667 HAQG 670
HA+G
Sbjct: 177 HAEG 180
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 10 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 69 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGXL---LDYVREHKDNIGSQYLLNWC 123
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 124 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 174
Query: 667 HAQG 670
HA+G
Sbjct: 175 HAEG 178
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 34/199 (17%)
Query: 491 DPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFK 550
+P SG + ++L+ T F + ++ G G ++KG V V++ +
Sbjct: 29 EPLTPSGEAPNQALLRILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELR 87
Query: 551 K-------ESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVT 603
+ + + E + + V + + LLG CL + L+ + M G L L V
Sbjct: 88 EATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVR 142
Query: 604 DLEDD--SLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLG 661
+ +D+ S L+W ++ A+G++YL + LVHRD+ A ++L+ V++
Sbjct: 143 EHKDNIGSQYLLNWCVQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKIT 193
Query: 662 SL----------SELHAQG 670
E HA+G
Sbjct: 194 DFGLAKLLGAEEKEYHAEG 212
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 10 RILKET-EFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 69 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 123
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 124 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 174
Query: 667 HAQG 670
HA+G
Sbjct: 175 HAEG 178
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 12 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 71 YVMASVDNPHVCRLLGICLTSTVQ--LIMQLMPFGCL---LDYVREHKDNIGSQYLLNWC 125
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 126 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 176
Query: 667 HAQG 670
HA+G
Sbjct: 177 HAEG 180
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 217 QFLNLSDNALTGFIPSEVGNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEG 276
++LNL +N++ +L L L LSKN + GL +L L + +N L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 277 QLSEGLFPTLDQLQVVDLSGNKLDGALPATLFLR-PNLRFLDL 318
++ F L +L+ + L N ++ ++P+ F R P+LR LDL
Sbjct: 98 VPTQA-FEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDL 138
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 74/178 (41%), Gaps = 8/178 (4%)
Query: 132 GSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSRNLLTGEIPNAISLLGN 191
+P S +R L L NS+ T L+ L L LS+NL+ A + L +
Sbjct: 27 AEVPASIPVNTR--YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 192 LTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDNALTGFIPSEVGN-LDKLIELDLSK-NS 249
L L L N T LS ++ L L +N + IPS N + L LDL +
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKR 143
Query: 250 ISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGNKLDGALPATL 307
+ GL NL L + L+ + L +L+ ++LSGN+LD P +
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNLKDIPN---LTALVRLEELELSGNRLDLIRPGSF 198
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 13 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 71
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 72 YVMASVDNPHVCRLLGICLTSTVQ--LIMQLMPFGCL---LDYVREHKDNIGSQYLLNWC 126
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 127 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 177
Query: 667 HAQG 670
HA+G
Sbjct: 178 HAEG 181
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 533 LAGGTTVVVKKV--SLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYM 590
+ G + VK++ +++S +++ +M+LD+ R L E + + + M
Sbjct: 29 VPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELM 88
Query: 591 VCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSI 650
+SL + D Q++ KIA+ + L +LH + + ++HRDV+ S++
Sbjct: 89 -----DTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS--VIHRDVKPSNV 141
Query: 651 LLDDKFEVRL 660
L++ +V++
Sbjct: 142 LINALGQVKM 151
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 11 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 69
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 70 YVMASVDNPHVCRLLGICLTSTVQ--LIMQLMPFGCL---LDYVREHKDNIGSQYLLNWC 124
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 125 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 175
Query: 667 HAQG 670
HA+G
Sbjct: 176 HAEG 179
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 14 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 72
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 73 YVMASVDNPHVCRLLGICLTSTVQ--LIMQLMPFGCL---LDYVREHKDNIGSQYLLNWC 127
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 128 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEY 178
Query: 667 HAQG 670
HA+G
Sbjct: 179 HAEG 182
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 26/170 (15%)
Query: 499 GDSFTYEQLLRATGNFSET---------NLIKKGHSGDLFKGTL----AGGTTVVVK--K 543
+ TYE+ RA +F+ +I G SG++ G L V +K K
Sbjct: 27 AEPHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALK 86
Query: 544 VSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVT 603
++ ++ E + + H ++ L G + ++V +YM G L + L
Sbjct: 87 AGYTERQRRDFLSEASIMGQFDHPNIIRLEG-VVTRGRLAMIVTEYMENGSLDTFLR--- 142
Query: 604 DLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLD 653
D + + L+ G G+ YL + VHRD+ A ++L+D
Sbjct: 143 -THDGQFTIMQLVGMLR---GVGAGMRYL---SDLGYVHRDLAARNVLVD 185
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 10 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 69 YVMASVDNPHVCRLLGICLTSTVQ--LIMQLMPFGCL---LDYVREHKDNIGSQYLLNWC 123
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 124 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 174
Query: 667 HAQG 670
HA+G
Sbjct: 175 HAEG 178
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 12 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 71 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 125
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 126 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 176
Query: 667 HAQG 670
HA+G
Sbjct: 177 HAEG 180
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 557 ELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWI 616
E D+ SR+ H V L C + + + Y G+L + ++ ++
Sbjct: 87 ERDVMSRLDHPFFVKLYF-CFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETC------- 138
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
TR A L YLH ++HRD++ +ILL++ +++
Sbjct: 139 TRFYTA-EIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQI 178
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 17 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 75
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 76 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 130
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 131 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 181
Query: 667 HAQG 670
HA+G
Sbjct: 182 HAEG 185
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 12 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 71 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 125
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 126 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEY 176
Query: 667 HAQG 670
HA+G
Sbjct: 177 HAEG 180
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 26/170 (15%)
Query: 499 GDSFTYEQLLRATGNFSET---------NLIKKGHSGDLFKGTL----AGGTTVVVK--K 543
+ TYE+ RA +F+ +I G SG++ G L V +K K
Sbjct: 27 AEPHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALK 86
Query: 544 VSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVT 603
++ ++ E + + H ++ L G + ++V +YM G L + L
Sbjct: 87 AGYTERQRRDFLSEASIMGQFDHPNIIRLEG-VVTRGRLAMIVTEYMENGSLDTFLR--- 142
Query: 604 DLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLD 653
D + + L+ G G+ YL + VHRD+ A ++L+D
Sbjct: 143 -THDGQFTIMQLVGMLR---GVGAGMRYL---SDLGYVHRDLAARNVLVD 185
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 17 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 75
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 76 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 130
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 131 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEY 181
Query: 667 HAQG 670
HA+G
Sbjct: 182 HAEG 185
>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
pdb|3E93|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
Length = 371
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 58 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 114
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 115 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 160
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 161 DLKPSNLAVNEDXELKI 177
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 104 SLPGSIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLG 163
S+P IP QVL L ++ PG F +L++L L L+ N L
Sbjct: 33 SVPAGIPT-------TTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFD 85
Query: 164 ELKKLSNLDLSRNLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLY 211
+L KL++L L N L L +LT + L +N + + LY
Sbjct: 86 KLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDILY 133
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 520 IKKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLL 573
I +G GD+ +G A + K +E ++ E + H +V L+
Sbjct: 18 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
G E+ ++ + G+L S L +V SLD + + A + L+YL
Sbjct: 78 GVITENPV--WIIMELCTLGELRSFL-QVRKF------SLDLASLILYAYQLSTALAYLE 128
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ VHRD+ A ++L+ V+LG
Sbjct: 129 SK---RFVHRDIAARNVLVSSNDCVKLGDF 155
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 13 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 71
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 72 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 126
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 127 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 177
Query: 667 HAQG 670
HA+G
Sbjct: 178 HAEG 181
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 506 QLLRATGNFSE--TNLIK--KGHSGDLFKGTLA-GGTTVVVKKVSLHSFKKESYMM-ELD 559
QL+ + G+ E N IK +G +G + T G V VKK+ L ++ + E+
Sbjct: 35 QLVVSPGDPREYLANFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVV 94
Query: 560 LFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRL 619
+ H +V + L + E +V +++ G L TD+ + + + I
Sbjct: 95 IMRDYHHDNVVDMYSSYLVGD-ELWVVMEFLEGGAL-------TDIVTHTRMNEEQIA-- 144
Query: 620 KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
+ + LSYLH N ++HRD+++ SILL ++L
Sbjct: 145 TVCLSVLRALSYLH---NQGVIHRDIKSDSILLTSDGRIKL 182
>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195
Length = 365
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 52 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 108
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 109 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 155
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 156 LKPSNLAVNEDXELKI 171
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 520 IKKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLL 573
I +G GD+ +G A + K +E ++ E + H +V L+
Sbjct: 18 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
G E+ ++ + G+L S L SLD + + A + L+YL
Sbjct: 78 GVITENPV--WIIMELCTLGELRSFLQVRK-------YSLDLASLILYAYQLSTALAYLE 128
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ VHRD+ A ++L+ V+LG
Sbjct: 129 SK---RFVHRDIAARNVLVSSNDCVKLGDF 155
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 35 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 93
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 94 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 148
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 149 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 199
Query: 667 HAQG 670
HA+G
Sbjct: 200 HAEG 203
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 534 AGGTTVVVKKV---SLHSFKKESYMMELDLFSRVSHA-RLVPLLGQCLEHETEKLLVYKY 589
A TV VK + + HS + + M EL + + H +V LLG C + +++ ++
Sbjct: 55 ATXRTVAVKMLKEGATHS-EHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 113
Query: 590 MVCGDLASSLHR-------VTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVH 642
G+L++ L DL D L +L+ + + + A+G+ +L + +H
Sbjct: 114 CKFGNLSTYLRSKRNEFVPYKDLYKDFL-TLEHL--IXYSFQVAKGMEFL---ASRKXIH 167
Query: 643 RDVQASSILLDDKFEVRL 660
RD+ A +ILL +K V++
Sbjct: 168 RDLAARNILLSEKNVVKI 185
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 10 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 69 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 123
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 124 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEY 174
Query: 667 HAQG 670
HA+G
Sbjct: 175 HAEG 178
>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine
pdb|4AA5|A Chain A, P38alpha Map Kinase Bound To Cmpd 33
Length = 365
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 52 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 108
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 109 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 155
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 156 LKPSNLAVNEDXELKI 171
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 13 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 71
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 72 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 126
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 127 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 177
Query: 667 HAQG 670
HA+G
Sbjct: 178 HAEG 181
>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based
Inhibitor
Length = 383
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 70 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 126
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 127 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 172
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 173 DLKPSNLAVNEDCELKI 189
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 518 NLIK--KGHSGDLFKGTL-AGGTTVVVKKVSLHSFKKESYMM-ELDLFSRVSHARLVPLL 573
N IK +G +G + T+ + G V VKK+ L ++ + E+ + H +V +
Sbjct: 35 NFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY 94
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
L + E +V +++ G L TD+ + + + I + +A+ + LS LH
Sbjct: 95 NSYLVGD-ELWVVMEFLEGGAL-------TDIVTHTRMNEEQIAAVCLAV--LQALSVLH 144
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRL 660
+ ++HRD+++ SILL V+L
Sbjct: 145 AQG---VIHRDIKSDSILLTHDGRVKL 168
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 16 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 74
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 75 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 129
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 130 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 180
Query: 667 HAQG 670
HA+G
Sbjct: 181 HAEG 184
>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P-
Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl-
Pyridin-3-Yl)naphthalen-1-Yl]urea
pdb|3CTQ|A Chain A, Structure Of Map Kinase P38 In Complex With A
1-O-Tolyl-1,2, 3-Triazole-4-Carboxamide
Length = 348
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 43 GHRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 99
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 100 LV-THLMGADL-NNIVKCAKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 145
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 146 DLKPSNLAVNEDCELKI 162
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 13 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 71
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 72 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 126
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 127 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 177
Query: 667 HAQG 670
HA+G
Sbjct: 178 HAEG 181
>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBG|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
pdb|3OC1|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 32/159 (20%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 149
Query: 644 DVQASSILLDDKFEVRL--GSLSELHAQGDSHQNVLTRF 680
D++ S++ +++ E+++ G L+ H + V TR+
Sbjct: 150 DLKPSNLAVNEDCELKILDGGLAR-HTDDEMTGYVATRW 187
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 10 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 69 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 123
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 124 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 174
Query: 667 HAQG 670
HA+G
Sbjct: 175 HAEG 178
>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
pdb|3IPH|A Chain A, Crystal Structure Of P38 In Complex With A Biphenylamide
Inhibitor
Length = 360
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 104 LV-THLMGADL-NNIVKXQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 150
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 151 LKPSNLAVNEDXELKI 166
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 10 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 69 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 123
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 124 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 174
Query: 667 HAQG 670
HA+G
Sbjct: 175 HAEG 178
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 20 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 78
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 79 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 133
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 134 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 184
Query: 667 HAQG 670
HA+G
Sbjct: 185 HAEG 188
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 520 IKKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLL 573
I +G GD+ +G A + K +E ++ E + H +V L+
Sbjct: 46 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 105
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
G E+ ++ + G+L S L SLD + + A + L+YL
Sbjct: 106 GVITENPV--WIIMELCTLGELRSFLQVRK-------YSLDLASLILYAYQLSTALAYLE 156
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ VHRD+ A ++L+ V+LG
Sbjct: 157 SK---RFVHRDIAARNVLVSSNDCVKLGDF 183
>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole
Inhibitor
Length = 372
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 59 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 115
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 116 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 161
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 162 DLKPSNLAVNEDCELKI 178
>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195
pdb|3FKL|A Chain A, P38 Kinase Crystal Structure In Complex With Ro9552
pdb|3FKN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro7125
pdb|3FL4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro5634
pdb|3FLQ|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((S)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin
pdb|3FLS|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((R)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin-7-One
pdb|3FLW|A Chain A, P38 Kinase Crystal Structure In Complex With Pamapimod
pdb|3FLY|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-Isopropylamino-8-Methyl-8h-Pyrido[2,
3- D]pyrimidin-7-One
pdb|3FLZ|A Chain A, P38 Kinase Crystal Structure In Complex With
8-Methyl-6-Phenoxy-2-
(Tetrahydro-Pyran-4-Ylamino)-8h-Pyrido[2,
3-D]pyrimidin-7-One
pdb|3FMH|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((R)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FMJ|A Chain A, P38 Kinase Crystal Structure In Complex With
4-(5-Methyl-3-Phenyl- Isoxazol-4-Yl)-Pyrimidin-2-Ylamine
pdb|3FMK|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((S)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FML|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6224
pdb|3FMM|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6226
pdb|3FMN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro2530
pdb|3FSF|A Chain A, P38 Kinase Crystal Structure In Complex With 3-(2,6-
Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-
Phenylamino]-
1-Methyl-3,4-Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3FSK|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6257
Length = 372
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 59 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 115
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 116 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 161
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 162 DLKPSNLAVNEDCELKI 178
>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
pdb|2EWA|A Chain A, Dual Binding Mode Of Pyridinylimidazole To Map Kinase P38
pdb|1A9U|A Chain A, The Complex Structure Of The Map Kinase P38SB203580
pdb|3HA8|A Chain A, The Complex Structure Of The Map Kinase P38COMPOUND 14B
Length = 379
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 66 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 122
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 123 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 168
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 169 DLKPSNLAVNEDCELKI 185
>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499
pdb|3FKO|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3668
pdb|3FLN|C Chain C, P38 Kinase Crystal Structure In Complex With R1487
Length = 372
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 59 GLRVAVKKLSKPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 115
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 116 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 161
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 162 DLKPSNLAVNEDCELKI 178
>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955
Length = 350
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 45 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 101
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 102 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 148
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 149 LKPSNLAVNEDCELKI 164
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 518 NLIK--KGHSGDLFKGTL-AGGTTVVVKKVSLHSFKKESYMM-ELDLFSRVSHARLVPLL 573
N IK +G +G + T+ + G V VKK+ L ++ + E+ + H +V +
Sbjct: 24 NFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY 83
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
L + E +V +++ G L TD+ + + + I + +A+ + LS LH
Sbjct: 84 NSYLVGD-ELWVVMEFLEGGAL-------TDIVTHTRMNEEQIAAVCLAV--LQALSVLH 133
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRL 660
+ ++HRD+++ SILL V+L
Sbjct: 134 AQG---VIHRDIKSDSILLTHDGRVKL 157
>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A
Pyrrole-2- Carboxamide Inhibitor
Length = 371
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 58 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 114
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 115 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 160
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 161 DLKPSNLAVNEDCELKI 177
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 518 NLIK--KGHSGDLFKGTL-AGGTTVVVKKVSLHSFKKESYMM-ELDLFSRVSHARLVPLL 573
N IK +G +G + T+ + G V VKK+ L ++ + E+ + H +V +
Sbjct: 33 NFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY 92
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
L + E +V +++ G L TD+ + + + I + +A+ + LS LH
Sbjct: 93 NSYLVGD-ELWVVMEFLEGGAL-------TDIVTHTRMNEEQIAAVCLAV--LQALSVLH 142
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ ++HRD+++ SILL V+L
Sbjct: 143 AQG---VIHRDIKSDSILLTHDGRVKLSDF 169
>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With
Inhibitor Pg-874743
pdb|2GHM|A Chain A, Mutated Map Kinase P38 (Mus Musculus) In Complex With
Inhbitor Pg-895449
Length = 348
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 43 GHRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 99
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 100 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 145
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 146 DLKPSNLAVNEDCELKI 162
>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121
Length = 362
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 49 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 105
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 106 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 151
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 152 DLKPSNLAVNEDCELKI 168
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 512 GNFSETNLIKKGHSGD--LFKGTLAGGTTVV--VKKVSLHSFKKESYMMELDLFSRVSHA 567
GN+ I KG+ L + L G + + K L+ + E+ + ++H
Sbjct: 15 GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHP 74
Query: 568 RLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAE 627
+V L + +E E L+ +Y G++ L +++ +S + + + A +
Sbjct: 75 NIVKLF-EVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARS-----KFRQIVSAVQ 128
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
Y H + +VHRD++A ++LLD +++
Sbjct: 129 ---YCHQK---RIVHRDLKAENLLLDADMNIKIADF 158
>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1-
Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3-
Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide
Length = 380
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 67 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 123
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 124 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 169
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 170 DLKPSNLAVNEDCELKI 186
>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase
Length = 362
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 49 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 105
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 106 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 151
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 152 DLKPSNLAVNEDCELKI 168
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 520 IKKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLL 573
I +G GD+ +G A + K +E ++ E + H +V L+
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 457
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
G E+ ++ + G+L S L +V SLD + + A + L+YL
Sbjct: 458 GVITENPV--WIIMELCTLGELRSFL-QVRKF------SLDLASLILYAYQLSTALAYLE 508
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ VHRD+ A ++L+ V+LG
Sbjct: 509 ---SKRFVHRDIAARNVLVSSNDCVKLGDF 535
>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a)
Activating Mutant
Length = 367
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 54 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 110
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 111 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 156
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 157 DLKPSNLAVNEDCELKI 173
>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase
Length = 380
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 67 GHRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 123
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 124 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 169
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 170 DLKPSNLAVNEDCELKI 186
>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With
Inhibitor Pg-892579
pdb|2GTN|A Chain A, Mutated Map Kinase P38 (mus Musculus) In Complex With
Inhbitor Pg-951717
Length = 348
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 43 GHRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 99
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 100 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 146
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 147 LKPSNLAVNEDCELKI 162
>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
pdb|1P38|A Chain A, The Structure Of The Map Kinase P38 At 2.1 Angstoms
Resolution
Length = 379
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 66 GHRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 122
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 123 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 168
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 169 DLKPSNLAVNEDCELKI 185
>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 380
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 67 GHRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 123
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 124 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 169
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 170 DLKPSNLAVNEDCELKI 186
>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-A
pdb|2FSM|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-B
Length = 367
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 54 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 110
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 111 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 156
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 157 DLKPSNLAVNEDCELKI 173
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 520 IKKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLL 573
I +G GD+ +G A + K +E ++ E + H +V L+
Sbjct: 21 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 80
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
G E+ ++ + G+L S L SLD + + A + L+YL
Sbjct: 81 GVITENPV--WIIMELCTLGELRSFLQVRK-------YSLDLASLILYAYQLSTALAYLE 131
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ VHRD+ A ++L+ V+LG
Sbjct: 132 SK---RFVHRDIAARNVLVSSNDCVKLGDF 158
>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant
Length = 360
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 150
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 151 LKPSNLAVNEDCELKI 166
>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48
pdb|3GCU|B Chain B, Human P38 Map Kinase In Complex With Rl48
pdb|3HV4|A Chain A, Human P38 Map Kinase In Complex With Rl51
pdb|3HV4|B Chain B, Human P38 Map Kinase In Complex With Rl51
pdb|3HV5|A Chain A, Human P38 Map Kinase In Complex With Rl24
pdb|3HV5|B Chain B, Human P38 Map Kinase In Complex With Rl24
pdb|3HV6|A Chain A, Human P38 Map Kinase In Complex With Rl39
pdb|3HV7|A Chain A, Human P38 Map Kinase In Complex With Rl38
pdb|3HUC|A Chain A, Human P38 Map Kinase In Complex With Rl40
pdb|3LFA|A Chain A, Human P38 Map Kinase In Complex With Dasatinib
pdb|3QUE|A Chain A, Human P38 Map Kinase In Complex With Skepinone-L
pdb|3QUD|A Chain A, Human P38 Map Kinase In Complex With
2-Amino-Phenylamino-Benzophenone
pdb|3UVP|A Chain A, Human P38 Map Kinase In Complex With A Benzamide
Substituted Benzosuberone
pdb|3UVQ|A Chain A, Human P38 Map Kinase In Complex With A Dibenzosuberone
Derivative
pdb|4EH2|A Chain A, Human P38 Map Kinase In Complex With Np-F1 And Rl87
pdb|4EH3|A Chain A, Human P38 Map Kinase In Complex With Np-F2 And Rl87
pdb|4EH4|A Chain A, Human P38 Map Kinase In Complex With Np-F3 And Rl87
pdb|4EH5|A Chain A, Human P38 Map Kinase In Complex With Np-F4 And Rl87
pdb|4EH6|A Chain A, Human P38 Map Kinase In Complex With Np-F5 And Rl87
pdb|4EH7|A Chain A, Human P38 Map Kinase In Complex With Np-F6 And Rl87
pdb|4EH8|A Chain A, Human P38 Map Kinase In Complex With Np-F7 And Rl87
pdb|4EH9|A Chain A, Human P38 Map Kinase In Complex With Np-F11 And Rl87
pdb|4EHV|A Chain A, Human P38 Map Kinase In Complex With Np-F10 And Rl87
pdb|3UVR|A Chain A, Human P38 Map Kinase In Complex With Km064
pdb|4DLI|A Chain A, Human P38 Map Kinase In Complex With Rl87
pdb|4DLJ|A Chain A, Human P38 Map Kinase In Complex With Rl163
Length = 360
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 149
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 150 DLKPSNLAVNEDCELKI 166
>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
pdb|3MPA|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 149
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 150 DLKPSNLAVNEDCELKI 166
>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38)
Length = 360
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GHRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 149
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 150 DLKPSNLAVNEDCELKI 166
>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant
Length = 360
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 150
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 151 LKPSNLAVNEDCELKI 166
>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex
With Dp802
Length = 354
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 150
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 151 LKPSNLAVNEDCELKI 166
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 520 IKKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLL 573
I +G GD+ +G A + K +E ++ E + H +V L+
Sbjct: 18 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
G E+ ++ + G+L S L SLD + + A + L+YL
Sbjct: 78 GVITENPV--WIIMELCTLGELRSFLQVRK-------YSLDLASLILYAYQLSTALAYLE 128
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ VHRD+ A ++L+ V+LG
Sbjct: 129 SK---RFVHRDIAARNVLVSSNDCVKLGDF 155
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 520 IKKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLL 573
I +G GD+ +G A + K +E ++ E + H +V L+
Sbjct: 23 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 82
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
G E+ ++ + G+L S L SLD + + A + L+YL
Sbjct: 83 GVITENPV--WIIMELCTLGELRSFLQVRK-------YSLDLASLILYAYQLSTALAYLE 133
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ VHRD+ A ++L+ V+LG
Sbjct: 134 SK---RFVHRDIAARNVLVSSNDCVKLGDF 160
>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376
pdb|3NNV|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp437
pdb|3NNW|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp802
Length = 354
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 150
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 151 LKPSNLAVNEDCELKI 166
>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain
In Complex With A Monocyclic Pyrazolone Inhibitor
Length = 360
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GHRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 149
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 150 DLKPSNLAVNEDCELKI 166
>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase
Length = 360
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 149
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 150 DLKPSNLAVNEDCELKI 166
>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map
Kinase
Length = 360
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 149
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 150 DLKPSNLAVNEDCELKI 166
>pdb|3HEC|A Chain A, P38 In Complex With Imatinib
pdb|3HEG|A Chain A, P38 In Complex With Sorafenib
Length = 348
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 43 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 99
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 100 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 146
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 147 LKPSNLAVNEDCELKI 162
>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor
Length = 383
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 70 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 126
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 127 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 172
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 173 DLKPSNLAVNEDCELKI 189
>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine
pdb|2YIX|A Chain A, Triazolopyridine Inhibitors Of P38
Length = 351
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 44 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 100
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 101 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 147
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 148 LKPSNLAVNEDCELKI 163
>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBJ|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
Length = 360
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 150
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 151 LKPSNLAVNEDCELKI 166
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 518 NLIK--KGHSGDLFKGTL-AGGTTVVVKKVSLHSFKKESYMM-ELDLFSRVSHARLVPLL 573
N IK +G +G + T+ + G V VKK+ L ++ + E+ + H +V +
Sbjct: 28 NFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY 87
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
L + E +V +++ G L TD+ + + + I + +A+ + LS LH
Sbjct: 88 NSYLVGD-ELWVVMEFLEGGAL-------TDIVTHTRMNEEQIAAVCLAV--LQALSVLH 137
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRL 660
+ ++HRD+++ SILL V+L
Sbjct: 138 AQG---VIHRDIKSDSILLTHDGRVKL 161
>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase
Length = 367
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 54 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 110
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 111 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 156
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 157 DLKPSNLAVNEDCELKI 173
>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In
Phosphorylated P38a And In Solution
Length = 370
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 57 GHRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 113
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 114 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 159
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 160 DLKPSNLAVNEDCELKI 176
>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea
pdb|2BAK|A Chain A, P38alpha Map Kinase Bound To Mpaq
pdb|4A9Y|A Chain A, P38alpha Map Kinase Bound To Cmpd 8
pdb|4AA0|A Chain A, P38alpha Map Kinase Bound To Cmpd 2
pdb|4AA4|A Chain A, P38alpha Map Kinase Bound To Cmpd 22
pdb|4AAC|A Chain A, P38alpha Map Kinase Bound To Cmpd 29
Length = 365
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 52 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 108
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 109 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 155
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 156 LKPSNLAVNEDCELKI 171
>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
Length = 349
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 44 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 100
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 101 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 147
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 148 LKPSNLAVNEDCELKI 163
>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant
Length = 360
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 150
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 151 LKPSNLAVNEDCELKI 166
>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8T|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg-Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 149
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 150 DLKPSNLAVNEDCELKI 166
>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|3MW1|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|2YIS|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase.
pdb|2YIW|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase
Length = 359
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 46 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 102
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 103 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 149
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 150 LKPSNLAVNEDCELKI 165
>pdb|2OUA|A Chain A, Crystal Structure Of Nocardiopsis Protease (Napase)
pdb|2OUA|B Chain B, Crystal Structure Of Nocardiopsis Protease (Napase)
Length = 188
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 463 RCDKGIANQRGSANVGPVPEGHSTPPPKDPAIVSGVGDSFTYEQ---------LLRATGN 513
RC G A S G V GH +I +G G +E+ +R T N
Sbjct: 14 RCSVGFAATNASGQPGFVTAGHCGSVGTQVSIGNGRG---VFERSVFPGNDAAFVRGTSN 70
Query: 514 FSETNLIKKGHSGDLFKGTLAGGTTVVV 541
F+ TNL+ + +SG T++G +T +
Sbjct: 71 FTLTNLVSRYNSGGY--ATVSGSSTAPI 96
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 108 SIPEWFGYRLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKK 167
S+P +L L L L + G F L++L +LYL N L +L +
Sbjct: 42 SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ 101
Query: 168 LSNLDLSRNLLTGEIPNAI-SLLGNLTRLNLASNFFTGQIP 207
L L L N L +P+ I L +L ++ L +N + P
Sbjct: 102 LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 520 IKKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLL 573
I +G GD+ +G A + K +E ++ E + H +V L+
Sbjct: 20 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 79
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
G E+ ++ + G+L S L SLD + + A + L+YL
Sbjct: 80 GVITENPV--WIIMELCTLGELRSFLQVRK-------YSLDLASLILYAYQLSTALAYLE 130
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ VHRD+ A ++L+ V+LG
Sbjct: 131 SK---RFVHRDIAARNVLVSSNDCVKLGDF 157
>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Nuclear Substrate Mef2a
pdb|1LEZ|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Activator Mkk3b
Length = 360
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GHRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 149
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 150 DLKPSNLAVNEDCELKI 166
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 19/172 (11%)
Query: 484 HSTPPPKDPAIVSGVGDSFTYEQLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKK 543
H+TP + D + +++L G+F E L K +G V+ K+
Sbjct: 10 HATPGMFVQHSTAIFSDRYKGQRVL-GKGSFGEVILCKDKITGQ------ECAVKVISKR 62
Query: 544 VSLHSFKKESYMMELDLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVT 603
KES + E+ L ++ H ++ L + E + LV + G+L +
Sbjct: 63 QVKQKTDKESLLREVQLLKQLDHPNIMKLY-EFFEDKGYFYLVGEVYTGGELFDEII--- 118
Query: 604 DLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDK 655
S + + +I G++Y+H +VHRD++ ++LL+ K
Sbjct: 119 -----SRKRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESK 162
>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715
pdb|3ZSH|A Chain A, X-Ray Structure Of P38alpha Bound To Scio-469
pdb|3ZSI|A Chain A, X-Ray Structure Of P38alpha Bound To Vx-745
pdb|3ZS5|A Chain A, Structural Basis For Kinase Selectivity Of Three Clinical
P38alpha Inhibitors
Length = 362
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 49 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 105
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 106 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 151
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 152 DLKPSNLAVNEDCELKI 168
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
Dgtp
pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
Amppnp And Cdp
Length = 888
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 235 GNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTL----DQLQ 290
G D L E L + +G + L + +R+ + NG S GL P + + +
Sbjct: 230 GIYDTLKECALISKT-AGGIGLHIHNIRSTGSYIAGTNGT----SNGLIPMIRVFNNTAR 284
Query: 291 VVDLSGNKLDGALPATLFLRP----NLRFLDLSRNN 322
VD GNK GA L+L P F+D+ +N+
Sbjct: 285 YVDQGGNKAPGAF--ALYLEPWHADIFDFIDIRKNH 318
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
pdb|1WBO|A Chain A, Fragment Based P38 Inhibitors
pdb|1W7H|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W82|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W83|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W84|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1ZZ2|A Chain A, Two Classes Of P38alpha Map Kinase Inhibitors Having A
Common Diphenylether Core But Exhibiting Divergent
Binding Modes
pdb|1WBN|A Chain A, Fragment Based P38 Inhibitors
pdb|1WBS|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBT|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-based Lead Generation.
pdb|1WBV|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBW|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1ZYJ|A Chain A, Human P38 Map Kinase In Complex With Inhibitor 1a
pdb|2ZAZ|A Chain A, Crystal Structure Of P38 In Complex With 4-Anilino
Quinoline Inhibitor
pdb|2ZB0|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|2ZB1|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|3HL7|A Chain A, Crystal Structure Of Human P38alpha Complexed With Sd-0006
pdb|3HLL|A Chain A, Crystal Structure Of Human P38alpha Complexed With
Ph-797804
pdb|3HP2|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyridinone Compound
pdb|3HP5|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyrimidopyridazinone Compound
pdb|3KF7|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Triazolopyrimidine Compound
pdb|3MGY|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3ROC|A Chain A, Crystal Structure Of Human P38 Alpha Complexed With A
Pyrimidinone Compound
pdb|3RIN|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|4E5B|A Chain A, Structure Of P38a Map Kinase Without Bog
pdb|4E6A|A Chain A, P38a-Pia23 Complex
pdb|4E6C|A Chain A, P38a-perifosine Complex
pdb|4E8A|A Chain A, The Crystal Structure Of P38a Map Kinase In Complex With
Pia24
Length = 360
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 150
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 151 LKPSNLAVNEDCELKI 166
>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A
Dihydroquinazolinone Inhibitor
pdb|1OUK|A Chain A, The Structure Of P38 Alpha In Complex With A
Pyridinylimidazole Inhibitor
pdb|1OUY|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydropyrido- Pyrimidine Inhibitor
pdb|1R39|A Chain A, The Structure Of P38alpha
pdb|1YQJ|A Chain A, Crystal Structure Of P38 Alpha In Complex With A Selective
Pyridazine Inhibitor
pdb|2OKR|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2OKR|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|B Chain B, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|1WFC|A Chain A, Structure Of Apo, Unphosphorylated, P38 Mitogen Activated
Protein Kinase P38 (P38 Map Kinase) The Mammalian
Homologue Of The Yeast Hog1 Protein
pdb|3DS6|A Chain A, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|B Chain B, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|C Chain C, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|D Chain D, P38 Complex With A Phthalazine Inhibitor
pdb|3FC1|X Chain X, Crystal Structure Of P38 Kinase Bound To
Pyrimido-Pyridazinone Inhibitor
pdb|3GFE|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor
pdb|3ITZ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridazine Inhibitor
pdb|3LHJ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor.
pdb|3ZYA|A Chain A, Human P38 Map Kinase In Complex With 2-Amino-Phenylamino-
Dibenzosuberone
pdb|3U8W|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Triazolopyridazinone Inhibitor
Length = 366
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 53 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 109
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 110 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 155
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 156 DLKPSNLAVNEDCELKI 172
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 520 IKKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLL 573
I +G GD+ +G A + K +E ++ E + H +V L+
Sbjct: 15 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 74
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
G E+ ++ + G+L S L SLD + + A + L+YL
Sbjct: 75 GVITENPV--WIIMELCTLGELRSFLQVRK-------YSLDLASLILYAYQLSTALAYLE 125
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ VHRD+ A ++L+ V+LG
Sbjct: 126 SK---RFVHRDIAARNVLVSSNDCVKLGDF 152
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 594 DLASSLHRVTDLEDDSLQS-LDWITRLKIAIGAA--EGLSYLHHECNPPLVHRDVQASSI 650
DL S+L + L+ + S +D +T +AI A G+ ++HH C P + QA+ +
Sbjct: 50 DLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCTP-----EFQANEV 104
Query: 651 LLDDKFE 657
K+E
Sbjct: 105 RKVKKYE 111
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Amppnp And Cdp
pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Dgtp And Adp
Length = 888
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 235 GNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTL----DQLQ 290
G D L E L + +G + L + +R+ + NG S GL P + + +
Sbjct: 230 GIYDTLKECALISKT-AGGIGLHIHNIRSTGSYIAGTNGT----SNGLIPMIRVFNNTAR 284
Query: 291 VVDLSGNKLDGALPATLFLRP----NLRFLDLSRNN 322
VD GNK GA L+L P F+D+ +N+
Sbjct: 285 YVDAGGNKRPGAF--ALYLEPWHADIFDFIDIRKNH 318
>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A
Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE
COMPLEX IN Solution
Length = 359
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 52 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 108
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 109 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 155
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 156 LKPSNLAVNEDCELKI 171
>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk
Docking Peptide
Length = 362
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 49 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 105
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 106 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 151
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 152 DLKPSNLAVNEDSELKI 168
>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
Length = 360
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 104 LV-THLMGADL-NNIVKXQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 150
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 151 LKPSNLAVNEDCELKI 166
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 512 GNFSETNLIKKGHSGD--LFKGTLAGGTTVV--VKKVSLHSFKKESYMMELDLFSRVSHA 567
GN+ I KG+ L + L G + + K L+ + E+ + ++H
Sbjct: 12 GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHP 71
Query: 568 RLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAE 627
+V L + +E E L+ +Y G++ L +++ +S + + + A +
Sbjct: 72 NIVKLF-EVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARS-----KFRQIVSAVQ 125
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
Y H + +VHRD++A ++LLD +++
Sbjct: 126 ---YCHQK---RIVHRDLKAENLLLDADMNIKIADF 155
>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8U|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 150
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 151 LKPSNLAVNEDCELKI 166
>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l)
Activating Mutant
Length = 367
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 54 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 110
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 111 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 156
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 157 DLKPSNLAVNEDCELKI 173
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YLH N ++HRD++ ++ L+D +V++G
Sbjct: 137 QGVQYLH---NNRVIHRDLKLGNLFLNDDMDVKIGDF 170
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKK-------ESYMMEL 558
++L+ T F + ++ G G ++KG V V++ ++ + + E
Sbjct: 4 RILKET-EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 62
Query: 559 DLFSRVSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDD--SLQSLDWI 616
+ + V + + LLG CL + L+ + M G L L V + +D+ S L+W
Sbjct: 63 YVMASVDNPHVCRLLGICLTSTVQ--LITQLMPFGCL---LDYVREHKDNIGSQYLLNWC 117
Query: 617 TRLKIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL----------SEL 666
++ A+G++YL + LVHRD+ A ++L+ V++ E
Sbjct: 118 VQI------AKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY 168
Query: 667 HAQG 670
HA+G
Sbjct: 169 HAEG 172
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 534 AGGTTVVVKKV---SLHSFKKESYMMELDLFSRVSHA-RLVPLLGQCLEHETEKLLVYKY 589
A TV VK + + HS + + M EL + + H +V LLG C + +++ ++
Sbjct: 55 ATXRTVAVKMLKEGATHS-EHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEF 113
Query: 590 MVCGDLASSLHR-------VTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVH 642
G+L++ L DL D L I + A+G+ +L + +H
Sbjct: 114 CKFGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLIC---YSFQVAKGMEFL---ASRKXIH 167
Query: 643 RDVQASSILLDDKFEVRL 660
RD+ A +ILL +K V++
Sbjct: 168 RDLAARNILLSEKNVVKI 185
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YLH N ++HRD++ ++ L+D +V++G
Sbjct: 153 QGVQYLH---NNRVIHRDLKLGNLFLNDDMDVKIGDF 186
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YLH N ++HRD++ ++ L+D +V++G
Sbjct: 153 QGVQYLH---NNRVIHRDLKLGNLFLNDDMDVKIGDF 186
>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydroquinolinone
pdb|1R3C|A Chain A, The Structure Of P38alpha C162s Mutant
pdb|2I0H|A Chain A, The Structure Of P38alpha In Complex With An
Arylpyridazinone
pdb|3GC7|A Chain A, The Structure Of P38alpha In Complex With A
Dihydroquinazolinone
pdb|3NEW|A Chain A, P38-Alpha Complexed With Compound 10
Length = 366
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 53 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 109
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 110 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 155
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 156 DLKPSNLAVNEDSELKI 172
>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In
Complex With P38 Map Kinase
Length = 360
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 27/136 (19%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GHRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHECNPPLVHRD 644
LV +++ DL +++ + L DD +Q L + GL Y+H + ++HRD
Sbjct: 104 LV-THLMGADL-NNIVKCQKLTDDHVQFLIY--------QILRGLKYIH---SADIIHRD 150
Query: 645 VQASSILLDDKFEVRL 660
++ S++ +++ E+++
Sbjct: 151 LKPSNLAVNEDCELKI 166
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 627 EGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+G+ YLH N ++HRD++ ++ L+D +V++G
Sbjct: 153 QGVQYLH---NNRVIHRDLKLGNLFLNDDMDVKIGDF 186
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 520 IKKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLL 573
I +G GD+ +G A + K +E ++ E + H +V L+
Sbjct: 18 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
G E+ ++ + G+L S L +V SLD + + A + L+YL
Sbjct: 78 GVITENPV--WIIMELCTLGELRSFL-QVRKF------SLDLASLILYAYQLSTALAYLE 128
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ VHRD+ A ++L+ V+LG
Sbjct: 129 SK---RFVHRDIAARNVLVSATDCVKLGDF 155
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%)
Query: 116 RLPALQVLDLRSCSLSGSIPGSFGNLSRLNVLYLSGNSLAGNVPATLGELKKLSNLDLSR 175
+LP L+ ++ + ++ G+F S +N + L+ N L L+ L L L
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114
Query: 176 NLLTGEIPNAISLLGNLTRLNLASNFFTGQIPSGLYSLSSIQFLNLSDN 224
N +T ++ L ++ L+L N T P +L S+ LNL N
Sbjct: 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
Length = 514
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 594 DLASSLHRVTDLEDDSLQS-LDWITRLKIAIGAA--EGLSYLHHECNPPLVHRDVQASSI 650
DL S+L + L+ + S +D +T +AI A G+ ++HH C P + QA+ +
Sbjct: 50 DLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCTP-----EFQANEV 104
Query: 651 LLDDKFE 657
K+E
Sbjct: 105 RKVKKYE 111
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
With Ligands And Subunit Peptides
pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
With Designed Adp Analog Compound
pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
And Adp
pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
And Cdp
pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
Ribonucleotide Reductase
Length = 888
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 235 GNLDKLIELDLSKNSISGSLPLELRGLRNLAKLVISENGLEGQLSEGLFPTL----DQLQ 290
G D L E L + +G + L + +R+ + NG S GL P + + +
Sbjct: 230 GIYDTLKECALISKT-AGGIGLHIHNIRSTGSYIAGTNGT----SNGLIPMIRVFNNTAR 284
Query: 291 VVDLSGNKLDGALPATLFLRP----NLRFLDLSRNN 322
VD GNK GA L+L P F+D+ +N+
Sbjct: 285 YVDQGGNKRPGAF--ALYLEPWHADIFDFIDIRKNH 318
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 506 QLLRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVS 565
Q + G+F E L K +G V+ K+ KES + E+ L ++
Sbjct: 37 QRVLGKGSFGEVILCKDKITGQ------ECAVKVISKRQVKQKTDKESLLREVQLLKQLD 90
Query: 566 HARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGA 625
H ++ L + E + LV + G+L + S + + +I
Sbjct: 91 HPNIMKLY-EFFEDKGYFYLVGEVYTGGELFDEI--------ISRKRFSEVDAARIIRQV 141
Query: 626 AEGLSYLHHECNPPLVHRDVQASSILLDDK 655
G++Y+H +VHRD++ ++LL+ K
Sbjct: 142 LSGITYMH---KNKIVHRDLKPENLLLESK 168
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 512 GNFSE----TNLIKKGHSGDLFKG----TLAGGTTVVVKKVSLHSFKKESYMMELDLFSR 563
G F+E ++ KG G++ K T V+ K S + + + E++L +
Sbjct: 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKK 77
Query: 564 VSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSL-HRVTDLEDDSLQSLDWITRLKIA 622
+ H ++ L + LE + +V + G+L + R E D+ +I
Sbjct: 78 LDHPNIMKLF-EILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAA---------RII 127
Query: 623 IGAAEGLSYLHHECNPPLVHRDVQASSILLDDK 655
G++Y+H +VHRD++ +ILL+ K
Sbjct: 128 KQVFSGITYMHKH---NIVHRDLKPENILLESK 157
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 18/150 (12%)
Query: 520 IKKGHSGDLFKGTL------AGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLL 573
I +G GD+ +G A + K +E ++ E + H +V L+
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 457
Query: 574 GQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLH 633
G E+ ++ + G+L S L +V SLD + + A + L+YL
Sbjct: 458 GVITENPV--WIIMELCTLGELRSFL-QVRKF------SLDLASLILYAYQLSTALAYLE 508
Query: 634 HECNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ VHRD+ A ++L+ V+LG
Sbjct: 509 ---SKRFVHRDIAARNVLVSATDCVKLGDF 535
>pdb|2OZA|B Chain B, Structure Of P38alpha Complex
pdb|3P78|A Chain A, P38 Inhibitor-Bound
pdb|3P79|A Chain A, P38 Inhibitor-Bound
pdb|3P7A|A Chain A, P38 Inhibitor-Bound
pdb|3P7B|A Chain A, P38 Inhibitor-Bound
pdb|3P7C|A Chain A, P38 Inhibitor-Bound
pdb|3P5K|A Chain A, P38 Inhibitor-Bound
Length = 366
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 53 GHRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 109
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 110 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 155
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 156 DLKPSNLAVNEDCELKI 172
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 625 AAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
AAE + L H N +V+RD++ ++ILLD+ VR+ L
Sbjct: 298 AAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDL 336
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 625 AAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
AAE + L H N +V+RD++ ++ILLD+ VR+ L
Sbjct: 297 AAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDL 335
>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex
pdb|2QD9|A Chain A, P38 Alpha Map Kinase Inhibitor Based On Heterobicyclic
Scaffolds
pdb|2RG5|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11b
pdb|2RG6|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11j
pdb|3C5U|A Chain A, P38 Alpha Map Kinase Complexed With A Benzothiazole Based
Inhibitor
pdb|3BV2|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 30
pdb|3BV3|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 2
pdb|3BX5|A Chain A, P38 Alpha Map Kinase Complexed With Bms-640994
pdb|3L8X|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Pyrimidine
Based Inhibitor
pdb|3NWW|A Chain A, P38 Alpha Kinase Complexed With A
2-Aminothiazol-5-Yl-Pyrimidine Based Inhibitor
pdb|3MVL|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVL|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVM|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3MVM|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3OCG|A Chain A, P38 Alpha Kinase Complexed With A 5-Amino-Pyrazole Based
Inhibitor
pdb|3S4Q|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Triazine Based
Inhibitor
Length = 366
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 53 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 109
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 110 LV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 155
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 156 DLKPSNLAVNEDCELKI 172
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 625 AAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
AAE + L H N +V+RD++ ++ILLD+ VR+ L
Sbjct: 298 AAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDL 336
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 625 AAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
AAE + L H N +V+RD++ ++ILLD+ VR+ L
Sbjct: 298 AAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDL 336
>pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1752
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 240 LIELDLSKNSISGSL--PLELRGLRNLAKLVISENGLEGQLSEGLFPTLDQLQVVDLSGN 297
+IE D+ +I G + + LRG+ N+ ++ + E+ + Q+ +G F D+ V++ G
Sbjct: 1259 MIEEDVFLKTIEGHMLESISLRGVPNITRVYMMEHKIVRQIEDGTFERADEW-VLETDGI 1317
Query: 298 KLDGAL 303
L A+
Sbjct: 1318 NLTEAM 1323
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 20/181 (11%)
Query: 508 LRATGNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHS----FKKESYMMELDLFSR 563
++ + L+ +G G + K +V K L S K+ M E+ L +
Sbjct: 21 FQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQ 80
Query: 564 VSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDWITRLKIAI 623
+ H LV LL C + + LV++++ H + D + LD+ K
Sbjct: 81 LRHENLVNLLEVC-KKKKRWYLVFEFVD--------HTILDDLELFPNGLDYQVVQKYLF 131
Query: 624 GAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL---GSLSELHAQGDSHQN-VLTR 679
G+ + H + ++HRD++ +IL+ V+L G L A G+ + + V TR
Sbjct: 132 QIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATR 188
Query: 680 F 680
+
Sbjct: 189 W 189
>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580
pdb|3GCQ|A Chain A, Human P38 Map Kinase In Complex With Rl45
pdb|3GCS|A Chain A, Human P38 Map Kinase In Complex With Sorafenib
pdb|3GCV|A Chain A, Human P38 Map Kinase In Complex With Rl62
pdb|3HV3|A Chain A, Human P38 Map Kinase In Complex With Rl49
pdb|3IW5|A Chain A, Human P38 Map Kinase In Complex With An Indole Derivative
pdb|3IW6|A Chain A, Human P38 Map Kinase In Complex With A Benzylpiperazin-
Pyrrol
pdb|3IW7|A Chain A, Human P38 Map Kinase In Complex With An Imidazo-Pyridine
pdb|3IW8|A Chain A, Structure Of Inactive Human P38 Map Kinase In Complex With
A Thiazole-Urea
pdb|3HUB|A Chain A, Human P38 Map Kinase In Complex With Scios-469
pdb|3L8S|A Chain A, Human P38 Map Kinase In Complex With Cp-547632
pdb|3LFB|A Chain A, Human P38 Map Kinase In Complex With Rl98
pdb|3LFC|A Chain A, Human P38 Map Kinase In Complex With Rl99
pdb|3LFD|A Chain A, Human P38 Map Kinase In Complex With Rl113
pdb|3LFE|A Chain A, Human P38 Map Kinase In Complex With Rl116
pdb|3LFF|A Chain A, Human P38 Map Kinase In Complex With Rl166
pdb|3PG3|A Chain A, Human P38 Map Kinase In Complex With Rl182
Length = 360
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 29/137 (21%)
Query: 536 GTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHETEKL 584
G V VKK+S +H+ K +Y EL L + H ++ LL + LE +
Sbjct: 47 GLRVAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVY 103
Query: 585 LVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPLVHR 643
LV +++ DL +++ + L DD +Q L + I R GL Y+H + ++HR
Sbjct: 104 LV-THLMGADL-NNIVKSQKLTDDHVQFLIYQILR---------GLKYIH---SADIIHR 149
Query: 644 DVQASSILLDDKFEVRL 660
D++ S++ +++ E+++
Sbjct: 150 DLKPSNLAVNEDSELKI 166
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 29/186 (15%)
Query: 512 GNFSETNLIKKGHSGDLFKGTLAGGTTVVVKKVSLHSFKKESYMMELDLFSR--VSHARL 569
G+ + +G G ++K L V VK L K+S+ E ++FS + H L
Sbjct: 15 GSLQLLEIKARGRFGCVWKAQLMN-DFVAVKIFPLQD--KQSWQSEREIFSTPGMKHENL 71
Query: 570 VPLLGQCLEHETEKLLVYKYMVCGDLASSLHRVTDLEDDSLQS--LDWITRLKIAIGAAE 627
+ + E L V +++ ++ H L D L+ + W +A +
Sbjct: 72 LQFIAA--EKRGSNLEVELWLI-----TAFHDKGSL-TDYLKGNIITWNELCHVAETMSR 123
Query: 628 GLSYLHHEC--------NPPLVHRDVQASSILLDDKFEVRLGS------LSELHAQGDSH 673
GLSYLH + P + HRD ++ ++LL L GD+H
Sbjct: 124 GLSYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTH 183
Query: 674 QNVLTR 679
V TR
Sbjct: 184 GQVGTR 189
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 512 GNFSE----TNLIKKGHSGDLFKG----TLAGGTTVVVKKVSLHSFKKESYMMELDLFSR 563
G F+E ++ KG G++ K T V+ K S + + + E++L +
Sbjct: 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKK 77
Query: 564 VSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSL-HRVTDLEDDSLQSLDWITRLKIA 622
+ H ++ L + LE + +V + G+L + R E D+ +I
Sbjct: 78 LDHPNIMKLF-EILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAA---------RII 127
Query: 623 IGAAEGLSYLHHECNPPLVHRDVQASSILLDDK 655
G++Y+H +VHRD++ +ILL+ K
Sbjct: 128 KQVFSGITYMHKH---NIVHRDLKPENILLESK 157
>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha
pdb|3OHT|B Chain B, Crystal Structure Of Salmo Salar P38alpha
Length = 389
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 29/140 (20%)
Query: 533 LAGGTTVVVKKVS------LHSFKKESYMMELDLFSRVSHARLVPLL-----GQCLEHET 581
+ G + VKK+S +H+ K +Y EL L + H ++ LL LE
Sbjct: 73 VKSGLKIAVKKLSRPFQSIIHA--KRTYR-ELRLLKHMKHENVIGLLDVFTPATSLEEFN 129
Query: 582 EKLLVYKYMVCGDLASSLHRVTDLEDDSLQSLDW-ITRLKIAIGAAEGLSYLHHECNPPL 640
+ LV +++ DL +++ + L DD +Q L + I R GL Y+H + +
Sbjct: 130 DVYLV-THLMGADL-NNIVKCQKLTDDHVQFLIYQILR---------GLKYIH---SADI 175
Query: 641 VHRDVQASSILLDDKFEVRL 660
+HRD++ S++ +++ E+++
Sbjct: 176 IHRDLKPSNLAVNEDCELKI 195
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 512 GNFSE----TNLIKKGHSGDLFKG----TLAGGTTVVVKKVSLHSFKKESYMMELDLFSR 563
G F+E ++ KG G++ K T V+ K S + + + E++L +
Sbjct: 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKK 77
Query: 564 VSHARLVPLLGQCLEHETEKLLVYKYMVCGDLASSL-HRVTDLEDDSLQSLDWITRLKIA 622
+ H ++ L + LE + +V + G+L + R E D+ +I
Sbjct: 78 LDHPNIMKLF-EILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAA---------RII 127
Query: 623 IGAAEGLSYLHHECNPPLVHRDVQASSILLDDK 655
G++Y+H +VHRD++ +ILL+ K
Sbjct: 128 KQVFSGITYMHKH---NIVHRDLKPENILLESK 157
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 23/148 (15%)
Query: 523 GHSGDLFK------GTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQC 576
G G ++K G LA + K + E Y++E+++ + H +V LLG
Sbjct: 22 GAFGKVYKAKNKETGALAAAKVIETKSEE----ELEDYIVEIEILATCDHPYIVKLLG-A 76
Query: 577 LEHETEKLLVYKYMVCGDL-ASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHE 635
H+ + ++ ++ G + A L L + +Q + E L++LH
Sbjct: 77 YYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQV--------VCRQMLEALNFLH-- 126
Query: 636 CNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ ++HRD++A ++L+ + ++RL
Sbjct: 127 -SKRIIHRDLKAGNVLMTLEGDIRLADF 153
>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|B Chain B, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|C Chain C, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|D Chain D, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
Length = 316
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 620 KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLD 653
KIA+ + L +LH + + ++HRDV+ S++L++
Sbjct: 140 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLIN 171
>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
Length = 576
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
GL LH E +V+RD++ +ILLDD +R+ L
Sbjct: 298 GLEDLHRE---RIVYRDLKPENILLDDHGHIRISDL 330
>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|B Chain B, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|C Chain C, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALO|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Ternary Complex With Amp-Pnp And P38 Peptide
pdb|3VUT|A Chain A, Crystal Structures Of Non-Phosphorylated Map2k4
pdb|3VUT|B Chain B, Crystal Structures Of Non-Phosphorylated Map2k4
Length = 327
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 620 KIAIGAAEGLSYLHHECNPPLVHRDVQASSILLDDKFEVRL 660
KI + + L++L N ++HRD++ S+ILLD ++L
Sbjct: 129 KITLATVKALNHLKE--NLKIIHRDIKPSNILLDRSGNIKL 167
>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYN|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYO|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
pdb|3NYO|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
Length = 576
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 628 GLSYLHHECNPPLVHRDVQASSILLDDKFEVRLGSL 663
GL LH E +V+RD++ +ILLDD +R+ L
Sbjct: 298 GLEDLHRE---RIVYRDLKPENILLDDHGHIRISDL 330
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 23/148 (15%)
Query: 523 GHSGDLFK------GTLAGGTTVVVKKVSLHSFKKESYMMELDLFSRVSHARLVPLLGQC 576
G G ++K G LA + K + E Y++E+++ + H +V LLG
Sbjct: 30 GAFGKVYKAKNKETGALAAAKVIETKSEE----ELEDYIVEIEILATCDHPYIVKLLG-A 84
Query: 577 LEHETEKLLVYKYMVCGDL-ASSLHRVTDLEDDSLQSLDWITRLKIAIGAAEGLSYLHHE 635
H+ + ++ ++ G + A L L + +Q + E L++LH
Sbjct: 85 YYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQV--------VCRQMLEALNFLH-- 134
Query: 636 CNPPLVHRDVQASSILLDDKFEVRLGSL 663
+ ++HRD++A ++L+ + ++RL
Sbjct: 135 -SKRIIHRDLKAGNVLMTLEGDIRLADF 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,823,606
Number of Sequences: 62578
Number of extensions: 754937
Number of successful extensions: 3321
Number of sequences better than 100.0: 563
Number of HSP's better than 100.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 414
Number of HSP's that attempted gapping in prelim test: 2554
Number of HSP's gapped (non-prelim): 784
length of query: 693
length of database: 14,973,337
effective HSP length: 106
effective length of query: 587
effective length of database: 8,340,069
effective search space: 4895620503
effective search space used: 4895620503
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)