BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035790
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 156 bits (394), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 109/162 (67%), Gaps = 3/162 (1%)
Query: 6 PDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDM 65
PD+ T EP+D GFGAIV +C+ L RL++SGLLTD+ F YIG Y K + LSVAFAGDSD+
Sbjct: 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471
Query: 66 GLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMP 125
G+ +VL GC L+KLEIRD PFGD AL + MR LWMSSC ++ C+ + Q MP
Sbjct: 472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP 531
Query: 126 RLVVEVIR---SDDEEETDNYVETLYMYRSLEGPRHDAPKFV 164
+L VEVI + D VE +++YR++ GPR D P FV
Sbjct: 532 KLNVEVIDERGAPDSRPESCPVERVFIYRTVAGPRFDMPGFV 573
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 52 IRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMR-------- 103
+ TL++++A L +L CPKLQ+L + D DA L ++R
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSE 349
Query: 104 -FLWMSSCRLTRQGCQEIAQAMPRL 127
F+ + LT QG ++ P+L
Sbjct: 350 PFVMEPNVALTEQGLVSVSMGCPKL 374
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 11/175 (6%)
Query: 5 RPDHATGEPMDEGFGAIVRNCRKLTRLAV---SGLLTDRAFGYIGKYGKLIRTLSVAFAG 61
R + T P+D G +++ C+KL R A G LTD YIG+Y +R + + + G
Sbjct: 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474
Query: 62 DSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIA 121
+SD GL GCP LQKLE+R F + A+ + + ++R+LW+ R + G +
Sbjct: 475 ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534
Query: 122 QAMPRLVVEVIRSDDEEETDNYVETLYM--------YRSLEGPRHDAPKFVTILR 168
A P +E+I S E + E M Y SL G R D P V +L+
Sbjct: 535 MARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVLK 589
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 50 KLIRTLSVAFAGDSDMGLKYVL-EG---CPKLQKLEIRDSPF---GDAALRSGLHHYYNM 102
+L+ T+ + G G++++L EG C +L+ L+++D+ F G +AL L + N+
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245
Query: 103 RFLWMSSCRLTRQGCQEIAQAMPRL 127
R L ++ C L+ +G + A +L
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKL 270
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 74 CPKLQKLEIRDSPFGDAA---LRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVV 129
CPKL + + D+ FG A L L + + L++ + L Q +IA+A+ L V
Sbjct: 92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 150
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 50 KLIRTLSVAFAGDSDMGLKYVL-EG---CPKLQKLEIRDSPF---GDAALRSGLHHYYNM 102
+L+ T+ + G G++++L EG C +L+ L+++D+ F G +AL L + N+
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246
Query: 103 RFLWMSSCRLTRQGCQEIAQAMPRL 127
R L ++ C L+ +G + A +L
Sbjct: 247 RELGLNDCLLSARGAAAVVDAFSKL 271
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 74 CPKLQKLEIRDSPFGDAA---LRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVV 129
CPKL + + D+ FG A L L + + L++ + L Q +IA+A+ L V
Sbjct: 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 21 IVRNCRKLTRLAVSGL-LTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQK 79
I+ C KL L++ GL L+D + K L+R +G S+ L+ +L C +L +
Sbjct: 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172
Query: 80 LEI 82
L +
Sbjct: 173 LNL 175
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 21 IVRNCRKLTRLAVSGL-LTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQK 79
I+ C KL L++ GL L+D + K L+R +G S+ L+ +L C +L +
Sbjct: 75 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 134
Query: 80 LEI 82
L +
Sbjct: 135 LNL 137
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 52 IRTLSVAFAGDSDMG---LKYVLEGCPKLQKLEIRDSPFGDAALR----SGLHHYYNMRF 104
I+ LS+ ++ G L L P L++L + D+P GDA LR L ++
Sbjct: 83 IQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEK 142
Query: 105 LWMSSCRLTRQGCQEIAQAM--PRLVVEVIRSDDE 137
L + CRLT C+ +A + R + E+ S+++
Sbjct: 143 LQLEYCRLTAASCEPLASVLRATRALKELTVSNND 177
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 67 LKYVLEGCPKLQKLEIRDSPFGDAALR----SGLHHYYNMRFLWMSSCRLTRQGCQEIA 121
L VL+ L++L + + GD R S L + LW+ SC LT CQ ++
Sbjct: 272 LCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVS 330
>pdb|4FDW|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Bacova_01565) From Bacteroides Ovatus Atcc 8483 At 2.05
A Resolution
Length = 401
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 37 LTDRAFGYIGKYGKLIRTLSVAFAGDSDMGL-KYVLEGCPKLQKLEIRDS 85
+ RAF Y + + + T F D + + Y LEGCPKL + EI +S
Sbjct: 262 IASRAFYYCPELAE-VTTYGSTFNDDPEAXIHPYCLEGCPKLARFEIPES 310
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 52 IRTLSVAFAGDSDMG---LKYVLEGCPKLQKLEIRDSPFGDAALR---SGLHH-YYNMRF 104
I+ LS+ G ++ G L +L L++L + D+P GDA L+ GL +
Sbjct: 83 IQKLSLQNCGLTEAGCGILPGMLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEK 142
Query: 105 LWMSSCRLTRQGCQEIAQAM 124
L + C LT C+ +A +
Sbjct: 143 LQLEYCNLTATSCEPLASVL 162
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 76 KLQKLEIRDSPFGDA---ALRSGLH-HYYNMRFLWMSSCRLTRQGCQEIAQAM 124
LQ+L++ + G+A AL GL +R LW+ C +T +GC+++ + +
Sbjct: 224 SLQELDLSSNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVL 276
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 76 KLQKLEIRDSPFGDAALRSGLHHYYN----MRFLWMSSCRLTRQGCQEIAQAM 124
L +L++ +P GD ++ +R LW+ C +T GC +A +
Sbjct: 338 SLLELQMSSNPLGDEGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVL 390
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 67 LKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGC--QEIAQAM 124
L+ + E CP L+ L + + D + L N++ L + +C +T + + + +
Sbjct: 85 LEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNAYRENVFKLL 144
Query: 125 PRLV-VEVIRSDDEEETDNYVE 145
P+++ ++ D++E D+ VE
Sbjct: 145 PQVMYLDGYDRDNKEAPDSDVE 166
>pdb|1JGC|A Chain A, The 2.6 A Structure Resolution Of Rhodobacter Capsulatus
Bacterioferritin With Metal-Free Dinuclear Site And Heme
Iron In A Crystallographic Special Position
pdb|1JGC|B Chain B, The 2.6 A Structure Resolution Of Rhodobacter Capsulatus
Bacterioferritin With Metal-Free Dinuclear Site And Heme
Iron In A Crystallographic Special Position
pdb|1JGC|C Chain C, The 2.6 A Structure Resolution Of Rhodobacter Capsulatus
Bacterioferritin With Metal-Free Dinuclear Site And Heme
Iron In A Crystallographic Special Position
Length = 161
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 45 IGKYGKLIRTLSVAFAGDSDMGLKYVL--EGCPKLQKLE-IRDSPFGDAALRSGLHHYYN 101
+ K K R S+ G +D + +L EG P LQKL+ +R L L ++
Sbjct: 37 LAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDPLRIGEGPRETLECDLAGEHD 96
Query: 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPR 157
L+ R R C E+ + + + E + +D+E D + +Y L GP+
Sbjct: 97 ALKLY----REARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQISLYDRL-GPQ 147
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 76 KLQKLEIRDSPFGD---AALRSGLHHYYN-MRFLWMSSCRLTRQGCQEIAQAM 124
L++L + + GD A L GL H + +R LW+ C +T +GC ++ + +
Sbjct: 227 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 279
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 76 KLQKLEIRDSPFGD---AALRSGLHHYYN-MRFLWMSSCRLTRQGCQEIAQAM 124
L++L + + GD A L GL H + +R LW+ C +T +GC ++ + +
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 66 GLKYVLEGCPK-LQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAM 124
G ++ E C + L+ + I SP +AAL + ++ +T +G + + +
Sbjct: 77 GYRHAAEKCREILETITIAISPDDEAAL------------IKIAGTAITGKGAEAYKEKL 124
Query: 125 PRLVVEVIRSDDEEETD----NYVETLYMYRSLEGPRHDA 160
L V+ +RS EEE D N +E + + + G D+
Sbjct: 125 SALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDS 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,107,907
Number of Sequences: 62578
Number of extensions: 231000
Number of successful extensions: 445
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 26
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)