Query 035790
Match_columns 198
No_of_seqs 277 out of 1165
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:27:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.5 2.5E-14 5.5E-19 128.1 4.2 168 12-181 176-381 (483)
2 KOG4341 F-box protein containi 99.5 1.2E-14 2.6E-19 130.2 1.9 168 13-181 151-329 (483)
3 KOG1947 Leucine rich repeat pr 99.4 3.2E-13 7E-18 120.9 9.6 120 12-131 200-327 (482)
4 KOG1947 Leucine rich repeat pr 99.3 9.1E-12 2E-16 111.5 8.5 125 11-135 173-305 (482)
5 KOG2120 SCF ubiquitin ligase, 99.2 2.2E-11 4.7E-16 106.1 6.3 153 13-167 197-359 (419)
6 cd00116 LRR_RI Leucine-rich re 99.1 5.8E-10 1.2E-14 95.3 10.9 74 50-123 165-244 (319)
7 cd00116 LRR_RI Leucine-rich re 99.0 3.1E-09 6.8E-14 90.8 10.7 118 18-135 157-288 (319)
8 KOG2120 SCF ubiquitin ligase, 98.8 5.5E-09 1.2E-13 91.2 5.2 120 14-135 223-348 (419)
9 KOG3864 Uncharacterized conser 98.5 1.4E-07 2.9E-12 78.2 4.0 95 36-132 112-211 (221)
10 KOG1909 Ran GTPase-activating 98.2 2.1E-06 4.5E-11 76.1 5.8 103 23-125 210-325 (382)
11 KOG3207 Beta-tubulin folding c 98.2 7E-07 1.5E-11 81.1 2.0 117 16-135 108-232 (505)
12 KOG1909 Ran GTPase-activating 98.2 6.9E-06 1.5E-10 72.9 7.8 55 74-128 184-241 (382)
13 KOG3864 Uncharacterized conser 98.2 1.1E-06 2.3E-11 72.9 2.5 81 53-135 104-186 (221)
14 PF14580 LRR_9: Leucine-rich r 98.1 2.8E-07 6.1E-12 74.8 -2.0 136 24-186 17-154 (175)
15 PF14580 LRR_9: Leucine-rich r 98.0 1.8E-06 3.8E-11 70.1 0.3 105 23-132 39-147 (175)
16 KOG3665 ZYG-1-like serine/thre 97.9 1.6E-05 3.5E-10 76.9 5.3 63 27-89 123-187 (699)
17 KOG3665 ZYG-1-like serine/thre 97.8 8.2E-05 1.8E-09 72.0 9.3 111 18-128 140-278 (699)
18 KOG3207 Beta-tubulin folding c 97.8 1.2E-05 2.5E-10 73.4 2.9 93 16-111 136-233 (505)
19 PLN00113 leucine-rich repeat r 97.7 4.1E-05 9E-10 75.5 5.8 82 49-133 187-268 (968)
20 PLN00113 leucine-rich repeat r 97.7 5.4E-05 1.2E-09 74.7 5.8 86 23-112 90-176 (968)
21 smart00367 LRR_CC Leucine-rich 97.6 6.4E-05 1.4E-09 42.0 2.7 22 74-95 1-23 (26)
22 smart00367 LRR_CC Leucine-rich 97.5 6.3E-05 1.4E-09 42.0 2.1 24 99-122 1-25 (26)
23 PF12799 LRR_4: Leucine Rich r 97.4 0.00014 3E-09 45.8 2.6 38 75-114 1-38 (44)
24 PF13855 LRR_8: Leucine rich r 97.2 2.7E-05 6E-10 51.6 -2.6 60 50-111 1-60 (61)
25 PF13516 LRR_6: Leucine Rich r 97.0 0.00051 1.1E-08 37.4 1.9 21 75-95 2-22 (24)
26 PF13516 LRR_6: Leucine Rich r 97.0 0.00057 1.2E-08 37.2 1.9 24 99-122 1-24 (24)
27 PF12799 LRR_4: Leucine Rich r 96.9 0.0011 2.4E-08 41.6 3.2 38 50-89 1-38 (44)
28 KOG4194 Membrane glycoprotein 96.8 0.0015 3.3E-08 62.0 4.6 169 23-194 99-291 (873)
29 COG5238 RNA1 Ran GTPase-activa 96.6 0.022 4.7E-07 50.0 10.0 105 23-128 89-242 (388)
30 COG5238 RNA1 Ran GTPase-activa 96.6 0.02 4.4E-07 50.2 9.5 120 16-135 20-167 (388)
31 KOG2123 Uncharacterized conser 96.5 0.00067 1.4E-08 59.4 0.2 109 14-128 5-120 (388)
32 KOG2739 Leucine-rich acidic nu 96.2 0.0015 3.3E-08 55.9 0.4 72 41-113 54-129 (260)
33 KOG4194 Membrane glycoprotein 96.1 0.0019 4.1E-08 61.4 0.6 58 72-135 362-426 (873)
34 KOG4308 LRR-containing protein 96.0 0.0024 5.3E-08 59.4 1.1 115 14-128 100-232 (478)
35 smart00368 LRR_RI Leucine rich 96.0 0.0082 1.8E-07 34.0 2.7 23 101-123 3-25 (28)
36 smart00368 LRR_RI Leucine rich 95.8 0.012 2.6E-07 33.3 2.8 24 75-98 2-25 (28)
37 KOG2982 Uncharacterized conser 95.7 0.0068 1.5E-07 53.6 2.4 92 38-130 59-151 (418)
38 KOG4308 LRR-containing protein 95.4 0.007 1.5E-07 56.4 1.4 98 27-124 205-314 (478)
39 PLN03150 hypothetical protein; 95.3 0.026 5.6E-07 54.1 5.0 83 28-113 420-503 (623)
40 KOG2739 Leucine-rich acidic nu 95.1 0.0095 2.1E-07 51.1 1.4 85 25-111 64-154 (260)
41 PLN03150 hypothetical protein; 95.1 0.031 6.7E-07 53.6 4.9 88 22-111 438-526 (623)
42 PF13855 LRR_8: Leucine rich r 94.9 0.0016 3.5E-08 43.0 -3.2 58 75-134 1-58 (61)
43 KOG2123 Uncharacterized conser 94.9 0.0063 1.4E-07 53.4 -0.4 91 38-135 5-98 (388)
44 KOG3763 mRNA export factor TAP 94.7 0.05 1.1E-06 51.3 5.0 88 39-128 207-304 (585)
45 KOG1259 Nischarin, modulator o 94.7 0.0076 1.6E-07 53.5 -0.4 79 49-134 328-408 (490)
46 KOG2982 Uncharacterized conser 94.7 0.022 4.8E-07 50.5 2.4 83 52-135 47-131 (418)
47 PLN03210 Resistant to P. syrin 94.5 0.024 5.1E-07 57.9 2.7 82 24-111 776-880 (1153)
48 KOG1859 Leucine-rich repeat pr 93.7 0.0055 1.2E-07 59.7 -3.6 37 23-62 184-221 (1096)
49 KOG0618 Serine/threonine phosp 93.5 0.058 1.3E-06 53.7 2.9 91 14-111 372-487 (1081)
50 PLN03210 Resistant to P. syrin 93.4 0.048 1E-06 55.8 2.4 81 24-111 632-715 (1153)
51 KOG1259 Nischarin, modulator o 93.2 0.071 1.5E-06 47.5 2.8 92 24-121 327-423 (490)
52 KOG0618 Serine/threonine phosp 93.0 0.016 3.4E-07 57.6 -1.7 74 53-133 362-438 (1081)
53 KOG1644 U2-associated snRNP A' 91.3 0.22 4.7E-06 41.9 3.4 93 37-133 49-148 (233)
54 KOG0531 Protein phosphatase 1, 90.0 0.069 1.5E-06 48.3 -0.8 60 48-114 116-176 (414)
55 KOG1644 U2-associated snRNP A' 89.7 0.25 5.4E-06 41.5 2.4 82 49-135 41-123 (233)
56 KOG1859 Leucine-rich repeat pr 89.6 0.13 2.9E-06 50.4 0.8 34 75-111 187-220 (1096)
57 PRK15387 E3 ubiquitin-protein 88.9 0.36 7.8E-06 47.7 3.2 9 25-33 241-249 (788)
58 PRK15387 E3 ubiquitin-protein 88.7 0.24 5.1E-06 49.0 1.8 54 50-113 382-435 (788)
59 KOG0531 Protein phosphatase 1, 88.4 0.099 2.1E-06 47.3 -1.0 88 22-118 114-205 (414)
60 PF13504 LRR_7: Leucine rich r 88.3 0.36 7.7E-06 24.1 1.5 12 76-87 2-13 (17)
61 KOG0444 Cytoskeletal regulator 87.0 0.12 2.6E-06 50.1 -1.3 56 50-111 222-279 (1255)
62 KOG4579 Leucine-rich repeat (L 86.7 0.096 2.1E-06 41.8 -1.8 89 16-113 14-113 (177)
63 KOG4658 Apoptotic ATPase [Sign 86.1 0.76 1.6E-05 46.1 3.7 77 49-133 594-676 (889)
64 KOG3763 mRNA export factor TAP 85.0 1.8 3.8E-05 41.2 5.3 92 13-106 205-307 (585)
65 KOG0472 Leucine-rich repeat pr 84.2 1.6 3.4E-05 40.5 4.5 41 19-61 428-469 (565)
66 KOG0444 Cytoskeletal regulator 84.2 0.043 9.3E-07 53.1 -5.7 104 23-135 242-372 (1255)
67 KOG3735 Tropomodulin and leiom 82.2 3.2 6.9E-05 37.2 5.5 87 38-124 186-279 (353)
68 KOG4658 Apoptotic ATPase [Sign 82.2 0.84 1.8E-05 45.8 2.1 59 49-110 617-678 (889)
69 KOG4237 Extracellular matrix p 81.7 0.67 1.5E-05 42.6 1.1 82 22-111 270-357 (498)
70 COG4886 Leucine-rich repeat (L 81.7 0.7 1.5E-05 41.0 1.2 58 51-112 141-198 (394)
71 KOG4237 Extracellular matrix p 80.8 1.1 2.5E-05 41.2 2.2 18 96-113 318-335 (498)
72 PF07723 LRR_2: Leucine Rich R 80.3 2.4 5.3E-05 23.4 2.7 25 101-125 1-26 (26)
73 PRK15370 E3 ubiquitin-protein 80.2 3.3 7.1E-05 40.9 5.4 97 26-135 325-425 (754)
74 PF00560 LRR_1: Leucine Rich R 77.7 1.4 3E-05 23.2 1.1 13 101-113 1-13 (22)
75 PRK15370 E3 ubiquitin-protein 76.0 4 8.6E-05 40.4 4.6 57 49-113 324-380 (754)
76 KOG3735 Tropomodulin and leiom 75.2 12 0.00027 33.5 7.0 96 15-110 187-293 (353)
77 KOG4579 Leucine-rich repeat (L 74.0 2.9 6.2E-05 33.5 2.5 136 50-192 27-170 (177)
78 PRK15386 type III secretion pr 73.8 5.3 0.00011 36.9 4.5 84 10-111 37-123 (426)
79 COG4886 Leucine-rich repeat (L 70.8 2.1 4.6E-05 37.9 1.2 80 26-111 140-220 (394)
80 smart00369 LRR_TYP Leucine-ric 59.6 6 0.00013 21.2 1.2 14 99-112 1-14 (26)
81 smart00370 LRR Leucine-rich re 59.6 6 0.00013 21.2 1.2 14 99-112 1-14 (26)
82 smart00365 LRR_SD22 Leucine-ri 54.5 8.6 0.00019 21.3 1.3 14 100-113 2-15 (26)
83 KOG0617 Ras suppressor protein 53.6 0.38 8.2E-06 39.9 -6.1 60 48-111 77-161 (264)
84 PRK15386 type III secretion pr 38.2 20 0.00042 33.2 1.7 64 39-113 42-108 (426)
85 COG1509 KamA Lysine 2,3-aminom 35.8 2.4E+02 0.0052 25.7 8.1 129 39-172 147-294 (369)
86 KOG0472 Leucine-rich repeat pr 35.6 20 0.00044 33.4 1.4 15 72-86 249-263 (565)
87 PF07557 Shugoshin_C: Shugoshi 34.9 16 0.00035 20.4 0.4 10 178-187 11-20 (26)
88 PF13306 LRR_5: Leucine rich r 27.8 15 0.00033 26.5 -0.6 80 23-109 9-90 (129)
89 PF07735 FBA_2: F-box associat 24.2 2.1E+02 0.0046 18.6 6.1 30 78-107 35-69 (70)
90 PF06217 GAGA_bind: GAGA bindi 23.6 29 0.00062 30.7 0.2 11 186-196 220-230 (301)
91 PF08004 DUF1699: Protein of u 21.2 2.1E+02 0.0045 22.2 4.4 40 45-85 12-51 (131)
92 PF08004 DUF1699: Protein of u 20.6 83 0.0018 24.4 2.1 26 8-33 23-48 (131)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.47 E-value=2.5e-14 Score=128.12 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=115.1
Q ss_pred CCcHHHHHHHHhhCCCCceeEec--CCCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCC-CC
Q 035790 12 EPMDEGFGAIVRNCRKLTRLAVS--GLLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDS-PF 87 (198)
Q Consensus 12 ~~~D~g~~ai~~~c~~L~~L~L~--g~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c-~~ 87 (198)
.+||..+..+++.|++|++|++. -.+||..|+++++.|++|++|++++|.. ++.|++.+.+||++|+++.+++| ..
T Consensus 176 ~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 176 KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence 57888999999999999999993 4569999999999999999999999988 88888888888877666655555 34
Q ss_pred C--------------------------hHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCCcEEEecCCCCchh
Q 035790 88 G--------------------------DAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRLVVEVIRSDDEEET 140 (198)
Q Consensus 88 t--------------------------D~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~~i~~~~~~~~ 140 (198)
. |+++..+...|..|+.|..++|. ++|.-+.+|.+++++|++..+.++.- =
T Consensus 256 ~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~--f 333 (483)
T KOG4341|consen 256 ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ--F 333 (483)
T ss_pred cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch--h
Confidence 4 44444444455555555555555 66666666666667776655554400 0
Q ss_pred HhHHHHHhHhhhccCCCCCCCCc-------ceeecccCCccccccccc
Q 035790 141 DNYVETLYMYRSLEGPRHDAPKF-------VTILRIIKPKLMLVQIKF 181 (198)
Q Consensus 141 ~~~~~~~~~y~sl~g~r~d~p~~-------v~~l~~~~~~~~~l~~~~ 181 (198)
.+.=.+.++|-+-.-+|.|.-+. +..+.+.|+.+..|-+|-
T Consensus 334 sd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslsh 381 (483)
T KOG4341|consen 334 SDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSH 381 (483)
T ss_pred hhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhh
Confidence 00112445555555666665543 444688899988888873
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.47 E-value=1.2e-14 Score=130.15 Aligned_cols=168 Identities=17% Similarity=0.262 Sum_probs=130.0
Q ss_pred CcHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCC-CCC
Q 035790 13 PMDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDS-PFG 88 (198)
Q Consensus 13 ~~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c-~~t 88 (198)
+-|..++..+..||++++|++.| .+||..+..++++|++|+.|+|..|.. ||..+++++++|++|+.|++++| .|+
T Consensus 151 v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 151 VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQIS 230 (483)
T ss_pred CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhh
Confidence 45677888899999999999955 579999999999999999999999888 99999999999999999999999 699
Q ss_pred hHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCCcEEEecCCCC-chhHhHHHH--H--hHhhhccCCCCCCCC
Q 035790 89 DAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRLVVEVIRSDDE-EETDNYVET--L--YMYRSLEGPRHDAPK 162 (198)
Q Consensus 89 D~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~~i~~~~~-~~~~~~~~~--~--~~y~sl~g~r~d~p~ 162 (198)
+.++..+.+.|++|+.+.+.||. ..++.+..++..++.+..+....++. ++..-.... | .-+.+.++. .|.++
T Consensus 231 ~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~-t~~~d 309 (483)
T KOG4341|consen 231 GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSC-TDITD 309 (483)
T ss_pred cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCC-CCCch
Confidence 99999999999999999999998 99999999999988776555444421 111111111 1 122233343 34554
Q ss_pred -cceeecccCCccccccccc
Q 035790 163 -FVTILRIIKPKLMLVQIKF 181 (198)
Q Consensus 163 -~v~~l~~~~~~~~~l~~~~ 181 (198)
.++.|--.|.||+.|.++-
T Consensus 310 ~~l~aLg~~~~~L~~l~l~~ 329 (483)
T KOG4341|consen 310 EVLWALGQHCHNLQVLELSG 329 (483)
T ss_pred HHHHHHhcCCCceEEEeccc
Confidence 4567888899999888864
No 3
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.45 E-value=3.2e-13 Score=120.92 Aligned_cols=120 Identities=25% Similarity=0.410 Sum_probs=96.1
Q ss_pred CCcHHHHHHHHhhCCCCceeEecC---CCCHHH--HHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCC
Q 035790 12 EPMDEGFGAIVRNCRKLTRLAVSG---LLTDRA--FGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDS 85 (198)
Q Consensus 12 ~~~D~g~~ai~~~c~~L~~L~L~g---~lTD~~--L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c 85 (198)
.++|.++.+++..|++|+.|++++ .+++.. ...++..|++|++|++.+|.. +|.|+.+++..|++|+.|.+..|
T Consensus 200 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c 279 (482)
T KOG1947|consen 200 KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNC 279 (482)
T ss_pred cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCC
Confidence 456677888888888888888854 223322 444777788888888888885 99999999888999999998888
Q ss_pred C-CChHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCCcEEE
Q 035790 86 P-FGDAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRLVVEV 131 (198)
Q Consensus 86 ~-~tD~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~~ 131 (198)
. +||+|+..++..|++|++|++++|. ++|.|+..++..||+|+...
T Consensus 280 ~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 280 SNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred CccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 5 8999999998999999999999998 88999998888888776533
No 4
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.29 E-value=9.1e-12 Score=111.54 Aligned_cols=125 Identities=23% Similarity=0.265 Sum_probs=108.7
Q ss_pred CCCcHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeec-cCC-ChH--HHHHHHhcCCCCceEEecC
Q 035790 11 GEPMDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAF-AGD-SDM--GLKYVLEGCPKLQKLEIRD 84 (198)
Q Consensus 11 ~~~~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~-c~~-tD~--gl~~i~~~C~~L~~L~L~~ 84 (198)
....+.++..+...|++|++|.+.+ .++|.++..++..|++|+.|+++. |.. ++. ....++..|++|+.|++++
T Consensus 173 ~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 173 SLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred ccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence 3445677788888899999999954 468988999999999999999997 343 443 3566889999999999999
Q ss_pred CC-CChHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCCcEEEecCC
Q 035790 85 SP-FGDAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 85 c~-~tD~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|. ++|.++.+++..|++|++|.+.+|. +|++|+..+++.||.|+...+..+
T Consensus 253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 95 9999999999999999999999999 999999999999999998888765
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.2e-11 Score=106.05 Aligned_cols=153 Identities=19% Similarity=0.254 Sum_probs=122.6
Q ss_pred CcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCC-CCh
Q 035790 13 PMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSP-FGD 89 (198)
Q Consensus 13 ~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~-~tD 89 (198)
++-..+..|+..|.+|+.|+|.| .+.|.....||+ ..+|+.|+|+.|.+ |..|+.-+.++|+.|.+|+|++|. ++|
T Consensus 197 it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 197 ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE 275 (419)
T ss_pred eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch
Confidence 34456778889999999999977 569999999996 68999999999999 999999999999999999999994 666
Q ss_pred HHHHHHHhc-CCCCcEEEeecee--cCHHHHHHHHHhCCCCcEEEecCCCC--chhHhHHHHH--hHhhhccCCCCCCCC
Q 035790 90 AALRSGLHH-YYNMRFLWMSSCR--LTRQGCQEIAQAMPRLVVEVIRSDDE--EETDNYVETL--YMYRSLEGPRHDAPK 162 (198)
Q Consensus 90 ~~l~~i~~~-~~~L~~L~L~~c~--iTd~gl~~La~~~p~L~~~~i~~~~~--~~~~~~~~~~--~~y~sl~g~r~d~p~ 162 (198)
. +..++.+ -++|+.|+|+||+ +-+.-++.++++||+|..+...++.+ .+....+-|+ +.|-||+-..+..|+
T Consensus 276 ~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~ 354 (419)
T KOG2120|consen 276 K-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPE 354 (419)
T ss_pred h-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChH
Confidence 6 5555444 4689999999997 77778999999999998777777633 2222234444 566777888888887
Q ss_pred cceee
Q 035790 163 FVTIL 167 (198)
Q Consensus 163 ~v~~l 167 (198)
.+.-+
T Consensus 355 ~~~~l 359 (419)
T KOG2120|consen 355 TLLEL 359 (419)
T ss_pred Heeee
Confidence 76655
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=5.8e-10 Score=95.33 Aligned_cols=74 Identities=23% Similarity=0.356 Sum_probs=35.3
Q ss_pred CCCcEEEeeccCCChHHHHHHHhc---CCCCceEEecCCCCChHHHHHH---HhcCCCCcEEEeeceecCHHHHHHHHHh
Q 035790 50 KLIRTLSVAFAGDSDMGLKYVLEG---CPKLQKLEIRDSPFGDAALRSG---LHHYYNMRFLWMSSCRLTRQGCQEIAQA 123 (198)
Q Consensus 50 ~~L~~L~L~~c~~tD~gl~~i~~~---C~~L~~L~L~~c~~tD~~l~~i---~~~~~~L~~L~L~~c~iTd~gl~~La~~ 123 (198)
++|+.|++++|..++.++..+... +++|+.|++++|.+++.++..+ ..++++|++|++++|++++.++..++..
T Consensus 165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~ 244 (319)
T cd00116 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA 244 (319)
T ss_pred CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH
Confidence 445555555554444444443322 2355555555555554443322 2344455555555555555555554444
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=3.1e-09 Score=90.80 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=94.4
Q ss_pred HHHHHhhCCCCceeEecC-CCCHHHHHHHHhcC---CCCcEEEeeccCCChHHHHHHH---hcCCCCceEEecCCCCChH
Q 035790 18 FGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYG---KLIRTLSVAFAGDSDMGLKYVL---EGCPKLQKLEIRDSPFGDA 90 (198)
Q Consensus 18 ~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~---~~L~~L~L~~c~~tD~gl~~i~---~~C~~L~~L~L~~c~~tD~ 90 (198)
+......+++|++|++++ .+++.++..++... ++|++|++++|..++.++..+. ..+++|++|++++|+++|.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 444556788999999955 46888888776544 4999999999988888776554 4688999999999999999
Q ss_pred HHHHHHhcC----CCCcEEEeeceecCHHHHHHHHHhCC---CCcEEEecCC
Q 035790 91 ALRSGLHHY----YNMRFLWMSSCRLTRQGCQEIAQAMP---RLVVEVIRSD 135 (198)
Q Consensus 91 ~l~~i~~~~----~~L~~L~L~~c~iTd~gl~~La~~~p---~L~~~~i~~~ 135 (198)
++..++..+ +.|++|++++|.+++.|...++..++ .|+...+..+
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 988877665 79999999999999999888877765 4555555554
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=5.5e-09 Score=91.22 Aligned_cols=120 Identities=14% Similarity=0.058 Sum_probs=91.3
Q ss_pred cHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHH-HhcCCCCceEEecCC--CCC
Q 035790 14 MDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYV-LEGCPKLQKLEIRDS--PFG 88 (198)
Q Consensus 14 ~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i-~~~C~~L~~L~L~~c--~~t 88 (198)
.|.-+..|++ ..+|++|+|++ .+|..++..|...|+.|..|+|++|+.+.+.+..+ +.--++|++|+|++| .+.
T Consensus 223 dD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 223 DDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ 301 (419)
T ss_pred CcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh
Confidence 3444456665 58999999932 24999999999999999999999999943335443 344578999999999 488
Q ss_pred hHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCCcEEEecCC
Q 035790 89 DAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 89 D~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
+..+..++++||+|.+|||+.|. +++.-+ ......|+|+....+.+
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFKFNYLQHLSLSRC 348 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHH-HHHHhcchheeeehhhh
Confidence 88888889999999999999998 888444 44446888876555544
No 9
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=1.4e-07 Score=78.19 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCC-CCChHHHHHHHhcCCCCcEEEeecee-c
Q 035790 36 LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDS-PFGDAALRSGLHHYYNMRFLWMSSCR-L 112 (198)
Q Consensus 36 ~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c-~~tD~~l~~i~~~~~~L~~L~L~~c~-i 112 (198)
.|.-++|+++. .++.|+.|.+.+|.. .|.++..+..-.++|+.|+|++| .|||.||+.+ .++++|+.|.|.+-+ |
T Consensus 112 ~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 112 SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLYDLPYV 189 (221)
T ss_pred hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHHHHhcCchhh
Confidence 35778888887 589999999999998 99999999998899999999999 6999999885 679999999999988 5
Q ss_pred CHHH-HH-HHHHhCCCCcEEEe
Q 035790 113 TRQG-CQ-EIAQAMPRLVVEVI 132 (198)
Q Consensus 113 Td~g-l~-~La~~~p~L~~~~i 132 (198)
...+ .. .|-..+|++++.-.
T Consensus 190 ~~~e~~~~~Le~aLP~c~I~~~ 211 (221)
T KOG3864|consen 190 ANLELVQRQLEEALPKCDIVGP 211 (221)
T ss_pred hchHHHHHHHHHhCcccceech
Confidence 5543 33 35567888876543
No 10
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.22 E-value=2.1e-06 Score=76.13 Aligned_cols=103 Identities=20% Similarity=0.217 Sum_probs=53.6
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHh---cCCCCcEEEeeccCCChHHHHHHH----hcCCCCceEEecCCCCChHHHHH
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGK---YGKLIRTLSVAFAGDSDMGLKYVL----EGCPKLQKLEIRDSPFGDAALRS 94 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~---~~~~L~~L~L~~c~~tD~gl~~i~----~~C~~L~~L~L~~c~~tD~~l~~ 94 (198)
..|++|+.|+|.. .+|-.+=.++|+ ..++|+.|++++|-..+.|..+|+ ++.|+|+.|++.+|.|+-++...
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~ 289 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA 289 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence 3466666666632 234444444443 234555666666655444544443 33456666666666555444332
Q ss_pred H---HhcCCCCcEEEeeceec--CHHHHHHHHHhCC
Q 035790 95 G---LHHYYNMRFLWMSSCRL--TRQGCQEIAQAMP 125 (198)
Q Consensus 95 i---~~~~~~L~~L~L~~c~i--Td~gl~~La~~~p 125 (198)
+ +...+.|+.|+|++|+. -++++..++...+
T Consensus 290 la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~ 325 (382)
T KOG1909|consen 290 LAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFD 325 (382)
T ss_pred HHHHHhcchhhHHhcCCcccccccchhHHHHHHhcc
Confidence 2 22355666666666664 5556666665554
No 11
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=7e-07 Score=81.15 Aligned_cols=117 Identities=20% Similarity=0.253 Sum_probs=89.2
Q ss_pred HHHHHHHhh---CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCC---C
Q 035790 16 EGFGAIVRN---CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSP---F 87 (198)
Q Consensus 16 ~g~~ai~~~---c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~---~ 87 (198)
-||..|++. ..+|+...|.. .+.+.+-+..++.|++++.|+|+.+-. .=.-+..|++.+|+|+.|+|+.|. +
T Consensus 108 iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 108 IGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred ecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence 366677654 55666667732 346666556777899999999998877 557788899999999999999884 3
Q ss_pred ChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 88 GDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 88 tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
++.-... ..++|+.|.|++|.+|-..+..++..+|.|..+....+
T Consensus 188 ~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 188 ISSNTTL---LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred ccccchh---hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 3333222 67789999999999999999999999999987776655
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.16 E-value=6.9e-06 Score=72.90 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=24.9
Q ss_pred CCCCceEEecCCCCChHHH---HHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790 74 CPKLQKLEIRDSPFGDAAL---RSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV 128 (198)
Q Consensus 74 C~~L~~L~L~~c~~tD~~l---~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~ 128 (198)
++.|+.+.++.+.|..+|+ .....+|++|+.|+|+.+-.|-.|-.+|+...|.|+
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 3444444444443332222 222345555555555555555555555555444443
No 13
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=1.1e-06 Score=72.89 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=68.4
Q ss_pred cEEEeeccCCChHHHHHHHhcCCCCceEEecCC-CCChHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCCcEE
Q 035790 53 RTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS-PFGDAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRLVVE 130 (198)
Q Consensus 53 ~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c-~~tD~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~ 130 (198)
+.++-+.+...-+|+.++ ++++.|+.|.+.+| .|.|.+|..+..-.++|+.|+|++|. ||+.|+.-|. ..++|+..
T Consensus 104 eaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L 181 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRL 181 (221)
T ss_pred EEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHH
Confidence 444445555577999987 67999999999999 79999999998888999999999998 9999999988 58888876
Q ss_pred EecCC
Q 035790 131 VIRSD 135 (198)
Q Consensus 131 ~i~~~ 135 (198)
.+..-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 66643
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.10 E-value=2.8e-07 Score=74.79 Aligned_cols=136 Identities=15% Similarity=0.237 Sum_probs=49.5
Q ss_pred hCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790 24 NCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM 102 (198)
Q Consensus 24 ~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L 102 (198)
++.++++|+|.|. .=..++.++..+.+|+.|++++|.. +=+|+. ++++|+.|++++|.+++-+ ..+..++++|
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~----~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNNQITKLEGLP----GLPRLKTLDLSNNRISSIS-EGLDKNLPNL 90 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred ccccccccccccc-ccccccchhhhhcCCCEEECCCCCCccccCcc----ChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence 4667888999663 1123456665678899999998887 333433 4788999999998877642 1233468899
Q ss_pred cEEEeeceecCH-HHHHHHHHhCCCCcEEEecCCCCchhHhHHHHHhHhhhccCCCCCCCCcceeecccCCccccccccc
Q 035790 103 RFLWMSSCRLTR-QGCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKPKLMLVQIKF 181 (198)
Q Consensus 103 ~~L~L~~c~iTd-~gl~~La~~~p~L~~~~i~~~~~~~~~~~~~~~~~y~sl~g~r~d~p~~v~~l~~~~~~~~~l~~~~ 181 (198)
++|++++++|.+ ..+..++ .+|+|++..+.+++.. +-+.|-..+.-.+++|..|+...
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~--------------------~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLS-SLPKLRVLSLEGNPVC--------------------EKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TTS---SCCCCGGGG-G-TT--EEE-TT-GGG--------------------GSTTHHHHHHHH-TT-SEETTEE
T ss_pred CEEECcCCcCCChHHhHHHH-cCCCcceeeccCCccc--------------------chhhHHHHHHHHcChhheeCCEE
Confidence 999999988655 3455555 6888888887765211 11333333344556666666666
Q ss_pred CCChh
Q 035790 182 AEPSD 186 (198)
Q Consensus 182 ~~~~~ 186 (198)
.++..
T Consensus 150 V~~~E 154 (175)
T PF14580_consen 150 VTEEE 154 (175)
T ss_dssp TTS-B
T ss_pred ccHHH
Confidence 55543
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.97 E-value=1.8e-06 Score=70.12 Aligned_cols=105 Identities=19% Similarity=0.181 Sum_probs=48.7
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHH-HHHHHhcCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAA-LRSGLHHYY 100 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~-l~~i~~~~~ 100 (198)
..+.+|+.|+++. .++. +..+. .+++|++|+++++..++-+ ..+.+.||+|++|.+++|.|.+-. +.. ...++
T Consensus 39 ~~l~~L~~L~Ls~N~I~~--l~~l~-~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~-L~~l~ 113 (175)
T PF14580_consen 39 ATLDKLEVLDLSNNQITK--LEGLP-GLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEP-LSSLP 113 (175)
T ss_dssp TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGG-GGG-T
T ss_pred hhhcCCCEEECCCCCCcc--ccCcc-ChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHH-HHcCC
Confidence 3467899999965 2232 33344 4799999999999885432 123356999999999999876632 434 46899
Q ss_pred CCcEEEeeceecCHH-HH-HHHHHhCCCCcEEEe
Q 035790 101 NMRFLWMSSCRLTRQ-GC-QEIAQAMPRLVVEVI 132 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~-gl-~~La~~~p~L~~~~i 132 (198)
+|+.|+|.+++|++. .. ..+...+|+|++..-
T Consensus 114 ~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 114 KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 999999999997654 33 346668999976543
No 16
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.89 E-value=1.6e-05 Score=76.86 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=28.8
Q ss_pred CCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCCh
Q 035790 27 KLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGD 89 (198)
Q Consensus 27 ~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD 89 (198)
+|++|+++| .++..=...|+..+|.|++|.+.+-....+-+..+..+.|+|..|||+++++++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n 187 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN 187 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC
Confidence 455555533 223333444555555555555544333222244444455555555555554443
No 17
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=8.2e-05 Score=72.00 Aligned_cols=111 Identities=20% Similarity=0.171 Sum_probs=79.3
Q ss_pred HHHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCC-hHHHHHHH---------------------hcC
Q 035790 18 FGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDS-DMGLKYVL---------------------EGC 74 (198)
Q Consensus 18 ~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~t-D~gl~~i~---------------------~~C 74 (198)
...+..-+|.|++|.+++ .+.++.|..+..++|||..||+++++.+ =.|+..+- -++
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 467778899999999976 3445558888889999999999998873 34443320 136
Q ss_pred CCCceEEecCCCCChHH--HHHH---HhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790 75 PKLQKLEIRDSPFGDAA--LRSG---LHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV 128 (198)
Q Consensus 75 ~~L~~L~L~~c~~tD~~--l~~i---~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~ 128 (198)
++|+.||+|.-...+.. +... ...+|+||.||.+|..++.+-++.+....|+|.
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 77888888876433222 1111 245788999999988888888888888888775
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=1.2e-05 Score=73.36 Aligned_cols=93 Identities=11% Similarity=0.064 Sum_probs=71.6
Q ss_pred HHHHHHHhhCCCCceeEecC-CC-CHHHHHHHHhcCCCCcEEEeeccCC---ChHHHHHHHhcCCCCceEEecCCCCChH
Q 035790 16 EGFGAIVRNCRKLTRLAVSG-LL-TDRAFGYIGKYGKLIRTLSVAFAGD---SDMGLKYVLEGCPKLQKLEIRDSPFGDA 90 (198)
Q Consensus 16 ~g~~ai~~~c~~L~~L~L~g-~l-TD~~L~~I~~~~~~L~~L~L~~c~~---tD~gl~~i~~~C~~L~~L~L~~c~~tD~ 90 (198)
.|....++.|++++.|+|++ ++ .-..+..|++..|+|+.|+|+.+.. ++.-... ..+.|++|.|+.|.++-.
T Consensus 136 ~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k 212 (505)
T KOG3207|consen 136 AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWK 212 (505)
T ss_pred cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhhhheEEeccCCCCHH
Confidence 34446788999999999987 33 4467888999999999999987653 2211111 456788999999999988
Q ss_pred HHHHHHhcCCCCcEEEeecee
Q 035790 91 ALRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 91 ~l~~i~~~~~~L~~L~L~~c~ 111 (198)
.+.+++..+|+|+.|.++++.
T Consensus 213 ~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 213 DVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred HHHHHHHhCCcHHHhhhhccc
Confidence 888988889998888888884
No 19
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.74 E-value=4.1e-05 Score=75.55 Aligned_cols=82 Identities=9% Similarity=-0.048 Sum_probs=35.4
Q ss_pred CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790 49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV 128 (198)
Q Consensus 49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~ 128 (198)
+++|++|+|++|..+..--..+ .++++|+.|++++|.++...-.. ..++++|++|++++|.++..--..+. .+++|+
T Consensus 187 l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~ 263 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQ 263 (968)
T ss_pred CcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHh-CCCCCC
Confidence 4455555555444321111111 23555555555555444322111 24556666666666654332222222 345555
Q ss_pred EEEec
Q 035790 129 VEVIR 133 (198)
Q Consensus 129 ~~~i~ 133 (198)
...+.
T Consensus 264 ~L~L~ 268 (968)
T PLN00113 264 YLFLY 268 (968)
T ss_pred EEECc
Confidence 44444
No 20
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.70 E-value=5.4e-05 Score=74.72 Aligned_cols=86 Identities=12% Similarity=0.112 Sum_probs=44.1
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|+.|+|++ .++...-..+...+++|++|+|+++..++. .. ....++|++|++++|.++..--.. ..++++
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~--~p-~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~ 165 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS--IP-RGSIPNLETLDLSNNMLSGEIPND-IGSFSS 165 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc--cC-ccccCCCCEEECcCCcccccCChH-HhcCCC
Confidence 4577777777744 223222233444567777777766654210 00 023556666666666544321111 245566
Q ss_pred CcEEEeeceec
Q 035790 102 MRFLWMSSCRL 112 (198)
Q Consensus 102 L~~L~L~~c~i 112 (198)
|++|+|++|.+
T Consensus 166 L~~L~L~~n~l 176 (968)
T PLN00113 166 LKVLDLGGNVL 176 (968)
T ss_pred CCEEECccCcc
Confidence 66666666653
No 21
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.59 E-value=6.4e-05 Score=41.96 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=10.6
Q ss_pred CCCCceEEecCC-CCChHHHHHH
Q 035790 74 CPKLQKLEIRDS-PFGDAALRSG 95 (198)
Q Consensus 74 C~~L~~L~L~~c-~~tD~~l~~i 95 (198)
|++|++|+|++| .|||.|+.++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 444555555555 3455554444
No 22
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.54 E-value=6.3e-05 Score=41.99 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=22.5
Q ss_pred CCCCcEEEeecee-cCHHHHHHHHH
Q 035790 99 YYNMRFLWMSSCR-LTRQGCQEIAQ 122 (198)
Q Consensus 99 ~~~L~~L~L~~c~-iTd~gl~~La~ 122 (198)
|++|++|+|++|. |||.|+..|++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 7899999999998 99999999985
No 23
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.38 E-value=0.00014 Score=45.81 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCH
Q 035790 75 PKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTR 114 (198)
Q Consensus 75 ~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd 114 (198)
++|++|++++|.|++- .....++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL--PPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCccc--CchHhCCCCCCEEEecCCCCCC
Confidence 4677777777777763 2324677777777777777653
No 24
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.17 E-value=2.7e-05 Score=51.61 Aligned_cols=60 Identities=13% Similarity=0.265 Sum_probs=40.6
Q ss_pred CCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790 50 KLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 50 ~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~ 111 (198)
|+|++|++++|..+.-.-. ...++++|++|++++|.++.-.-. ...++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~-~f~~l~~L~~L~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD-SFSNLPNLETLDLSNNNLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTT-TTTTGTTESEEEETSSSESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHH-HHcCCCCCCEeEccCCccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 5788888888865322222 235688899999998876532211 24678889999988876
No 25
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.99 E-value=0.00051 Score=37.38 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=8.6
Q ss_pred CCCceEEecCCCCChHHHHHH
Q 035790 75 PKLQKLEIRDSPFGDAALRSG 95 (198)
Q Consensus 75 ~~L~~L~L~~c~~tD~~l~~i 95 (198)
++|++|+|++|.|+|+|+.++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 344444444444444444443
No 26
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.96 E-value=0.00057 Score=37.19 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=19.6
Q ss_pred CCCCcEEEeeceecCHHHHHHHHH
Q 035790 99 YYNMRFLWMSSCRLTRQGCQEIAQ 122 (198)
Q Consensus 99 ~~~L~~L~L~~c~iTd~gl~~La~ 122 (198)
|++|++|+|++|.|+++|+++|++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhCC
Confidence 579999999999999999999874
No 27
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.90 E-value=0.0011 Score=41.64 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=28.6
Q ss_pred CCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCCh
Q 035790 50 KLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGD 89 (198)
Q Consensus 50 ~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD 89 (198)
++|++|+++++..++ +.....+|++|+.|++++|+|+|
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence 589999999988865 33324679999999999998875
No 28
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.80 E-value=0.0015 Score=62.05 Aligned_cols=169 Identities=13% Similarity=0.067 Sum_probs=108.0
Q ss_pred hhCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCC---ChHHHHHHH----------------h----cCCCCce
Q 035790 23 RNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGD---SDMGLKYVL----------------E----GCPKLQK 79 (198)
Q Consensus 23 ~~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~---tD~gl~~i~----------------~----~C~~L~~ 79 (198)
...++|+.+++... --..+-+.+....+|+.|+|..+-. +.+.+.+.. . .-.++++
T Consensus 99 ~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred hcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 56788888888432 0112233333445677777766654 344444332 1 1246888
Q ss_pred EEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCCCC-chhHhHHHHHhHhhhccCCCC
Q 035790 80 LEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDE-EETDNYVETLYMYRSLEGPRH 158 (198)
Q Consensus 80 L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~~~-~~~~~~~~~~~~y~sl~g~r~ 158 (198)
|+|+++.||+-+.... ..+.+|-.|.|+.+++|.--.+.+. +.|+|+.+....+-. ....-.|..+-..+.|.-.|.
T Consensus 178 L~La~N~It~l~~~~F-~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 178 LNLASNRITTLETGHF-DSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred Eeeccccccccccccc-cccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence 8888887777665543 3455788888888886655444443 466665444333211 112335788888899999999
Q ss_pred CCCCcceeecccCCcccccccccCCChhhhhhhcCC
Q 035790 159 DAPKFVTILRIIKPKLMLVQIKFAEPSDVCQKWGRG 194 (198)
Q Consensus 159 d~p~~v~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 194 (198)
+.-.--.-.+..|.++..|+|+|-.=..|-..|=-|
T Consensus 256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred CcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 988877778889999999999998877776666443
No 29
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.61 E-value=0.022 Score=49.96 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=61.4
Q ss_pred hhCCCCceeEecC-CC---C-HHHHHHHHhcCCCCcEEEeeccCC-Ch------HHHHHHH-----hcCC----------
Q 035790 23 RNCRKLTRLAVSG-LL---T-DRAFGYIGKYGKLIRTLSVAFAGD-SD------MGLKYVL-----EGCP---------- 75 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~l---T-D~~L~~I~~~~~~L~~L~L~~c~~-tD------~gl~~i~-----~~C~---------- 75 (198)
-.||+|+..+||. .+ + ..--.+|+ +..+|++|-+.+|+. .- .++.+++ ..-|
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is-~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLIS-SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHh-cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 3699999999853 11 2 23334444 678888888888864 11 2222222 1223
Q ss_pred ------------------CCceEEecCCCCChHHHHHH----HhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790 76 ------------------KLQKLEIRDSPFGDAALRSG----LHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV 128 (198)
Q Consensus 76 ------------------~L~~L~L~~c~~tD~~l~~i----~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~ 128 (198)
+|+.+.+..|.|-.+|+..+ +.+|.+|+.|+|+.+..|-.|-..++...|.|+
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 44555555555545554443 356677777777777777777777776666665
No 30
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.56 E-value=0.02 Score=50.15 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=79.2
Q ss_pred HHHHHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEe---ec--cCC-ChHH---H---HHHHhcCCCCceEEe
Q 035790 16 EGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSV---AF--AGD-SDMG---L---KYVLEGCPKLQKLEI 82 (198)
Q Consensus 16 ~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L---~~--c~~-tD~g---l---~~i~~~C~~L~~L~L 82 (198)
.|+.+.+.....+..++||| .+..++++.|++.-.+-+.|.+ +. .+. -|+- + ....-+||+|++.++
T Consensus 20 k~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 20 KGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred hHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 44544445588999999988 5678888888876555555544 32 232 3322 2 222357999999999
Q ss_pred cCCCCChH---HHHHHHhcCCCCcEEEeeceecCHHHHHHHH------------HhCCCCcEEEecCC
Q 035790 83 RDSPFGDA---ALRSGLHHYYNMRFLWMSSCRLTRQGCQEIA------------QAMPRLVVEVIRSD 135 (198)
Q Consensus 83 ~~c~~tD~---~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La------------~~~p~L~~~~i~~~ 135 (198)
++|.|+-. -+...+.+.+.|.+|.|++|.+...|-..|+ ..-|.|++-++..+
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 99977654 3455577889999999999985554433333 23477776666543
No 31
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.00067 Score=59.35 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=75.5
Q ss_pred cHHHHHHHHhh--CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChH
Q 035790 14 MDEGFGAIVRN--CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDA 90 (198)
Q Consensus 14 ~D~g~~ai~~~--c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~ 90 (198)
|..-+..-++. ..+.++|+..| -++|- .|-+..+.|+.|.|+-+..+ .+..+ ..|.+|++|.|+.|.|.|-
T Consensus 5 Te~mV~~raK~sdl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIs--sL~pl-~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 5 TESMVYIRAKCSDLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKIS--SLAPL-QRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HHHHHHHHHHhhHHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccc--cchhH-HHHHHHHHHHHHhcccccH
Confidence 33444444431 23667788844 23774 35567899999999987773 34444 4599999999999988775
Q ss_pred HHHHHHhcCCCCcEEEeecee-cCHHH---HHHHHHhCCCCc
Q 035790 91 ALRSGLHHYYNMRFLWMSSCR-LTRQG---CQEIAQAMPRLV 128 (198)
Q Consensus 91 ~l~~i~~~~~~L~~L~L~~c~-iTd~g---l~~La~~~p~L~ 128 (198)
.=..-..++|+|+.|||..+. .-.+| -..+.+..|+|+
T Consensus 79 dEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLk 120 (388)
T KOG2123|consen 79 DELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLK 120 (388)
T ss_pred HHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccch
Confidence 533446899999999999987 43444 234667789886
No 32
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.16 E-value=0.0015 Score=55.94 Aligned_cols=72 Identities=21% Similarity=0.298 Sum_probs=55.4
Q ss_pred HHHHHHh--cCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChH-HHHHHHhcCCCCcEEEeeceecC
Q 035790 41 AFGYIGK--YGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDA-ALRSGLHHYYNMRFLWMSSCRLT 113 (198)
Q Consensus 41 ~L~~I~~--~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~-~l~~i~~~~~~L~~L~L~~c~iT 113 (198)
+|..+++ ..++|+.|.++.+.. -..||..++..||+|++|++++|.+.|- .+.- ...+++|.+|++..|++|
T Consensus 54 gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 54 GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVT 129 (260)
T ss_pred ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCcc
Confidence 3444443 357999999998865 6678999999999999999999987762 2222 467889999999999844
No 33
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.07 E-value=0.0019 Score=61.40 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=38.9
Q ss_pred hcCCCCceEEecCCC----CChHHHHHHHhcCCCCcEEEeecee---cCHHHHHHHHHhCCCCcEEEecCC
Q 035790 72 EGCPKLQKLEIRDSP----FGDAALRSGLHHYYNMRFLWMSSCR---LTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 72 ~~C~~L~~L~L~~c~----~tD~~l~~i~~~~~~L~~L~L~~c~---iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
.+.++|++|||+.+. |.|.+.. -..+++|++|.+.|++ |+..++. +.+.|+.+....+
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~--f~gl~~LrkL~l~gNqlk~I~krAfs----gl~~LE~LdL~~N 426 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVA--FNGLPSLRKLRLTGNQLKSIPKRAFS----GLEALEHLDLGDN 426 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhh--hccchhhhheeecCceeeecchhhhc----cCcccceecCCCC
Confidence 356889999999884 4564432 3568999999999997 5554432 5666665555544
No 34
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.04 E-value=0.0024 Score=59.38 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=87.6
Q ss_pred cHHHHHHHHh---hCCCCceeEecC-CCCHHHHHHHHhcCC----CCcEEEeeccCCChHHHHHHHhc---CCCCceEEe
Q 035790 14 MDEGFGAIVR---NCRKLTRLAVSG-LLTDRAFGYIGKYGK----LIRTLSVAFAGDSDMGLKYVLEG---CPKLQKLEI 82 (198)
Q Consensus 14 ~D~g~~ai~~---~c~~L~~L~L~g-~lTD~~L~~I~~~~~----~L~~L~L~~c~~tD~gl~~i~~~---C~~L~~L~L 82 (198)
.+.|+..+++ .++.|..|++++ .++|.+...+.+..+ .|++|.+..|..+++|...++.. +..|+.|++
T Consensus 100 ~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l 179 (478)
T KOG4308|consen 100 GDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDL 179 (478)
T ss_pred ccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHH
Confidence 4446666665 467888888855 568999999987554 46788999999988887776643 678889999
Q ss_pred cCCCCChHHHHHHHh-------cCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790 83 RDSPFGDAALRSGLH-------HYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV 128 (198)
Q Consensus 83 ~~c~~tD~~l~~i~~-------~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~ 128 (198)
+.|.+.+.|...+.. ...++++|+++.|.+|..++..+....+..+
T Consensus 180 ~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~ 232 (478)
T KOG4308|consen 180 SLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGE 232 (478)
T ss_pred HhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccc
Confidence 999887777665533 3557999999999999999998887766544
No 35
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.96 E-value=0.0082 Score=34.00 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=12.2
Q ss_pred CCcEEEeeceecCHHHHHHHHHh
Q 035790 101 NMRFLWMSSCRLTRQGCQEIAQA 123 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~gl~~La~~ 123 (198)
+|++|+|++|.++++|+.+|++.
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHHH
Confidence 45555555555555555555543
No 36
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.75 E-value=0.012 Score=33.33 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=18.2
Q ss_pred CCCceEEecCCCCChHHHHHHHhc
Q 035790 75 PKLQKLEIRDSPFGDAALRSGLHH 98 (198)
Q Consensus 75 ~~L~~L~L~~c~~tD~~l~~i~~~ 98 (198)
++|++|+|++|.|+|+|...++..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 468888888888888887776654
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.0068 Score=53.64 Aligned_cols=92 Identities=16% Similarity=0.184 Sum_probs=65.0
Q ss_pred CHHHHHHHHhcCCCCcEEEeeccCCCh-HHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHH
Q 035790 38 TDRAFGYIGKYGKLIRTLSVAFAGDSD-MGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQG 116 (198)
Q Consensus 38 TD~~L~~I~~~~~~L~~L~L~~c~~tD-~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~g 116 (198)
+...+..++..|..++.|+|+++..+| .-+.+|.++.|.|+.|+|+.|+++.. +..+.....+|++|-|.|..++-.-
T Consensus 59 ~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~ 137 (418)
T KOG2982|consen 59 NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQ 137 (418)
T ss_pred cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhh
Confidence 445677788888888888888887765 33667888888888888887765432 2233345668888888888777776
Q ss_pred HHHHHHhCCCCcEE
Q 035790 117 CQEIAQAMPRLVVE 130 (198)
Q Consensus 117 l~~La~~~p~L~~~ 130 (198)
........|.+.-.
T Consensus 138 ~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 138 STSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcchhhhhh
Confidence 66666666665433
No 38
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.39 E-value=0.007 Score=56.37 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=63.1
Q ss_pred CCceeEecC-CCCHHHHHHHHhc---CCC-CcEEEeeccCCChHHHHHHHhcCC----CCceEEecCCCCChHHHHHH--
Q 035790 27 KLTRLAVSG-LLTDRAFGYIGKY---GKL-IRTLSVAFAGDSDMGLKYVLEGCP----KLQKLEIRDSPFGDAALRSG-- 95 (198)
Q Consensus 27 ~L~~L~L~g-~lTD~~L~~I~~~---~~~-L~~L~L~~c~~tD~gl~~i~~~C~----~L~~L~L~~c~~tD~~l~~i-- 95 (198)
++++|++++ .+|+.....+... .+. +..|++.++...|.|++.+.+..+ .+++++++.|.|++.+...+
T Consensus 205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~ 284 (478)
T KOG4308|consen 205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE 284 (478)
T ss_pred cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence 466666633 3465555544432 233 555777777667777777665443 44788888888877765544
Q ss_pred -HhcCCCCcEEEeeceecCHHHHHHHHHhC
Q 035790 96 -LHHYYNMRFLWMSSCRLTRQGCQEIAQAM 124 (198)
Q Consensus 96 -~~~~~~L~~L~L~~c~iTd~gl~~La~~~ 124 (198)
..+|+.++.|.++.+.+++.+.+.+.+..
T Consensus 285 ~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l 314 (478)
T KOG4308|consen 285 VLVSCRQLEELSLSNNPLTDYGVELLLEAL 314 (478)
T ss_pred HHhhhHHHHHhhcccCccccHHHHHHHHHh
Confidence 45677788888888888888777666543
No 39
>PLN03150 hypothetical protein; Provisional
Probab=95.29 E-value=0.026 Score=54.05 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=51.5
Q ss_pred CceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEE
Q 035790 28 LTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLW 106 (198)
Q Consensus 28 L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~ 106 (198)
++.|+|++ .++...-..|+ .+++|+.|+|+++..+.. +......+++|+.|+|++|.++..--.. ..++++|++|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEE
Confidence 55566632 12222222344 578899999988765321 2222356888999999988776432222 35788899999
Q ss_pred eeceecC
Q 035790 107 MSSCRLT 113 (198)
Q Consensus 107 L~~c~iT 113 (198)
|++|.++
T Consensus 497 Ls~N~l~ 503 (623)
T PLN03150 497 LNGNSLS 503 (623)
T ss_pred CcCCccc
Confidence 9988754
No 40
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.13 E-value=0.0095 Score=51.15 Aligned_cols=85 Identities=13% Similarity=0.142 Sum_probs=60.1
Q ss_pred CCCCceeEecCC--CCHHHHHHHHhcCCCCcEEEeeccCCCh-HHHHHHHhcCCCCceEEecCCCC---ChHHHHHHHhc
Q 035790 25 CRKLTRLAVSGL--LTDRAFGYIGKYGKLIRTLSVAFAGDSD-MGLKYVLEGCPKLQKLEIRDSPF---GDAALRSGLHH 98 (198)
Q Consensus 25 c~~L~~L~L~g~--lTD~~L~~I~~~~~~L~~L~L~~c~~tD-~gl~~i~~~C~~L~~L~L~~c~~---tD~~l~~i~~~ 98 (198)
.|+|++|.++.. --..+|..+++.||+|++|+++.+...| ..+..+ +..++|..|++.+|.. .|-- +.+..-
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl-~~l~nL~~Ldl~n~~~~~l~dyr-e~vf~l 141 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL-KELENLKSLDLFNCSVTNLDDYR-EKVFLL 141 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh-hhhcchhhhhcccCCccccccHH-HHHHHH
Confidence 567788887432 2356788999999999999999998854 223333 4578899999999954 4443 344566
Q ss_pred CCCCcEEEeecee
Q 035790 99 YYNMRFLWMSSCR 111 (198)
Q Consensus 99 ~~~L~~L~L~~c~ 111 (198)
+++|++|+-..+.
T Consensus 142 l~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 142 LPSLKYLDGCDVD 154 (260)
T ss_pred hhhhccccccccC
Confidence 8888888755543
No 41
>PLN03150 hypothetical protein; Provisional
Probab=95.11 E-value=0.031 Score=53.56 Aligned_cols=88 Identities=9% Similarity=0.076 Sum_probs=58.3
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
+..+++|+.|+|++ .++...=..++ .+++|+.|+|+++..+..--..+ .++++|+.|+|++|.++-.-=..+.....
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~ 515 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSLSGRVPAALGGRLL 515 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCcccccCChHHhhccc
Confidence 34689999999954 23332222354 68999999999987643222233 46999999999999765332122223345
Q ss_pred CCcEEEeecee
Q 035790 101 NMRFLWMSSCR 111 (198)
Q Consensus 101 ~L~~L~L~~c~ 111 (198)
++..+++.++.
T Consensus 516 ~~~~l~~~~N~ 526 (623)
T PLN03150 516 HRASFNFTDNA 526 (623)
T ss_pred cCceEEecCCc
Confidence 67788888876
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.89 E-value=0.0016 Score=42.96 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=40.2
Q ss_pred CCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecC
Q 035790 75 PKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRS 134 (198)
Q Consensus 75 ~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~ 134 (198)
|+|++|++++|.++.-.-. ...++++|++|+|++|+++.-.-.. ...+|+|+...+..
T Consensus 1 p~L~~L~l~~n~l~~i~~~-~f~~l~~L~~L~l~~N~l~~i~~~~-f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD-SFSNLPNLETLDLSNNNLTSIPPDA-FSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETSSTESEECTT-TTTTGTTESEEEETSSSESEEETTT-TTTSTTESEEEETS
T ss_pred CcCcEEECCCCCCCccCHH-HHcCCCCCCEeEccCCccCccCHHH-HcCCCCCCEEeCcC
Confidence 6899999999976543321 2467999999999999854322122 24688888776654
No 43
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.0063 Score=53.41 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=68.2
Q ss_pred CHHHHHHHHhc--CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCH-
Q 035790 38 TDRAFGYIGKY--GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTR- 114 (198)
Q Consensus 38 TD~~L~~I~~~--~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd- 114 (198)
|.+.+..-++. ..+.+.|+.++|+.+|- .|.+..+.|+.|.|+-|.|+-- +. ..+|++|+.|.|..+.|.+
T Consensus 5 Te~mV~~raK~sdl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL--~p-l~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 5 TESMVYIRAKCSDLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL--AP-LQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HHHHHHHHHHhhHHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc--hh-HHHHHHHHHHHHHhcccccH
Confidence 55444444432 24788999999999884 4567899999999999988643 33 4689999999999999655
Q ss_pred HHHHHHHHhCCCCcEEEecCC
Q 035790 115 QGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 115 ~gl~~La~~~p~L~~~~i~~~ 135 (198)
+-++.|. ..|+|+.+++.++
T Consensus 79 dEL~YLk-nlpsLr~LWL~EN 98 (388)
T KOG2123|consen 79 DELEYLK-NLPSLRTLWLDEN 98 (388)
T ss_pred HHHHHHh-cCchhhhHhhccC
Confidence 4566665 7999998888764
No 44
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=94.71 E-value=0.05 Score=51.25 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCC--CC-ChHHHHHHHhcCCCCcEEEeeceec-C
Q 035790 39 DRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDS--PF-GDAALRSGLHHYYNMRFLWMSSCRL-T 113 (198)
Q Consensus 39 D~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c--~~-tD~~l~~i~~~~~~L~~L~L~~c~i-T 113 (198)
-.+|.++.+..+.+..++|+.+.. .=+++..+++.-|+|+.|+|+++ .+ ++..+.. .+...|++|+|.|++| |
T Consensus 207 ~~~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 207 AAVLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLCT 284 (585)
T ss_pred HHHHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCcccc
Confidence 456788899999999999999888 77899999999999999999998 33 3334443 2445699999999983 3
Q ss_pred H-----HHHHHHHHhCCCCc
Q 035790 114 R-----QGCQEIAQAMPRLV 128 (198)
Q Consensus 114 d-----~gl~~La~~~p~L~ 128 (198)
+ +-+.+|....|+|.
T Consensus 285 tf~~~s~yv~~i~~~FPKL~ 304 (585)
T KOG3763|consen 285 TFSDRSEYVSAIRELFPKLL 304 (585)
T ss_pred chhhhHHHHHHHHHhcchhe
Confidence 2 23667778899886
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.70 E-value=0.0076 Score=53.52 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=39.0
Q ss_pred CCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceec-CHHHHHHHHHhCCC
Q 035790 49 GKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL-TRQGCQEIAQAMPR 126 (198)
Q Consensus 49 ~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~i-Td~gl~~La~~~p~ 126 (198)
.++|+.|+|+++.. .=+|+.. +.-|+++|.+++|.+.+- +...++-+|..|++++++| ..+.++.|. ..|.
T Consensus 328 L~~L~~LDLS~N~Ls~~~Gwh~---KLGNIKtL~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG-~LPC 400 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAECVGWHL---KLGNIKTLKLAQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIG-NLPC 400 (490)
T ss_pred cccceEeecccchhHhhhhhHh---hhcCEeeeehhhhhHhhh---hhhHhhhhheeccccccchhhHHHhcccc-cccH
Confidence 34455555544433 2333321 233444444444433221 1134566777777777773 345566665 4676
Q ss_pred CcEEEecC
Q 035790 127 LVVEVIRS 134 (198)
Q Consensus 127 L~~~~i~~ 134 (198)
|++.....
T Consensus 401 LE~l~L~~ 408 (490)
T KOG1259|consen 401 LETLRLTG 408 (490)
T ss_pred HHHHhhcC
Confidence 66544443
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=0.022 Score=50.48 Aligned_cols=83 Identities=12% Similarity=0.148 Sum_probs=53.7
Q ss_pred CcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCCh-HHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcE
Q 035790 52 IRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGD-AALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVV 129 (198)
Q Consensus 52 L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD-~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~ 129 (198)
++-|.+.+|.. +...+..++..|..+++||+.+|.|+| ..+..|.+++|.|+.|+|+.++++.. +..+-.-..+|++
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEE
Confidence 44556666666 444466777788888888888887776 34667778888888888888774322 2222112346667
Q ss_pred EEecCC
Q 035790 130 EVIRSD 135 (198)
Q Consensus 130 ~~i~~~ 135 (198)
.+.++.
T Consensus 126 lVLNgT 131 (418)
T KOG2982|consen 126 LVLNGT 131 (418)
T ss_pred EEEcCC
Confidence 777654
No 47
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=94.53 E-value=0.024 Score=57.92 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=40.0
Q ss_pred hCCCCceeEecCC-CCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCC----------------
Q 035790 24 NCRKLTRLAVSGL-LTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDS---------------- 85 (198)
Q Consensus 24 ~c~~L~~L~L~g~-lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c---------------- 85 (198)
.+++|+.|+|++. ...+.-..++ .+++|+.|++.+|.. .. +.. .-++++|+.|++++|
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~--LP~-~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L 851 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLET--LPT-GINLESLESLDLSGCSRLRTFPDISTNISDL 851 (1153)
T ss_pred ccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCe--eCC-CCCccccCEEECCCCCccccccccccccCEe
Confidence 3567777777542 0111111233 466777777776654 11 000 003445555555554
Q ss_pred -----CCChHHHHHHHhcCCCCcEEEeecee
Q 035790 86 -----PFGDAALRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 86 -----~~tD~~l~~i~~~~~~L~~L~L~~c~ 111 (198)
.++. +-.-...+++|++|+|++|+
T Consensus 852 ~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 852 NLSRTGIEE--VPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred ECCCCCCcc--ChHHHhcCCCCCEEECCCCC
Confidence 3221 11123567777777777776
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.68 E-value=0.0055 Score=59.65 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=23.9
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD 62 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~ 62 (198)
+-.+.|++|+|+. .+++.. .|- .|++|++|+|+++..
T Consensus 184 qll~ale~LnLshNk~~~v~--~Lr-~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD--NLR-RLPKLKHLDLSYNCL 221 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH--HHH-hcccccccccccchh
Confidence 3456778888854 345543 443 578888888887653
No 49
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=93.46 E-value=0.058 Score=53.73 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=52.4
Q ss_pred cHHHHHHHHhhCCCCceeEecC----CCCHHHHHHHHhcCCCCcEEEeeccCC---ChHH-----HH-------------
Q 035790 14 MDEGFGAIVRNCRKLTRLAVSG----LLTDRAFGYIGKYGKLIRTLSVAFAGD---SDMG-----LK------------- 68 (198)
Q Consensus 14 ~D~g~~ai~~~c~~L~~L~L~g----~lTD~~L~~I~~~~~~L~~L~L~~c~~---tD~g-----l~------------- 68 (198)
+|..|..+ .+.++|+.|+|+. .+.+..+. ..+.|++|+|+++.- .|.- ++
T Consensus 372 td~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 372 TDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP 446 (1081)
T ss_pred cccchhhh-ccccceeeeeecccccccCCHHHHh----chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech
Confidence 44444443 5667777777732 12444433 345666666666543 1110 11
Q ss_pred HHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790 69 YVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 69 ~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~ 111 (198)
.+ ...+.|+.+||+.|.++...+.... -.++|++||++|+.
T Consensus 447 e~-~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 447 EL-AQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hh-hhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 11 1356788888887777777766643 23788888888886
No 50
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.44 E-value=0.048 Score=55.75 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=39.9
Q ss_pred hCCCCceeEecCC--CCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC-CCChHHHHHHHhcCC
Q 035790 24 NCRKLTRLAVSGL--LTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS-PFGDAALRSGLHHYY 100 (198)
Q Consensus 24 ~c~~L~~L~L~g~--lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c-~~tD~~l~~i~~~~~ 100 (198)
.+++|+.|+|++. ++ .+..++ .+++|+.|+|.+|..... +..-..++++|+.|++++| .++.-- . ..+++
T Consensus 632 ~l~~Lk~L~Ls~~~~l~--~ip~ls-~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L~L~~c~~L~~Lp--~-~i~l~ 704 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLK--EIPDLS-MATNLETLKLSDCSSLVE-LPSSIQYLNKLEDLDMSRCENLEILP--T-GINLK 704 (1153)
T ss_pred cCCCCCEEECCCCCCcC--cCCccc-cCCcccEEEecCCCCccc-cchhhhccCCCCEEeCCCCCCcCccC--C-cCCCC
Confidence 4566666666331 11 111122 356777777766654111 1111234667777777776 332211 0 01466
Q ss_pred CCcEEEeecee
Q 035790 101 NMRFLWMSSCR 111 (198)
Q Consensus 101 ~L~~L~L~~c~ 111 (198)
+|++|++++|.
T Consensus 705 sL~~L~Lsgc~ 715 (1153)
T PLN03210 705 SLYRLNLSGCS 715 (1153)
T ss_pred CCCEEeCCCCC
Confidence 67777777664
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=93.20 E-value=0.071 Score=47.50 Aligned_cols=92 Identities=15% Similarity=0.058 Sum_probs=61.6
Q ss_pred hCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChH-HHHHHHhcCCC
Q 035790 24 NCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDA-ALRSGLHHYYN 101 (198)
Q Consensus 24 ~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~-~l~~i~~~~~~ 101 (198)
..++|++|+|++. +-..+.-.-....|++.|.|+.+.. +=.|+.. .-+|..||+++|+|..- .+.. +.++|.
T Consensus 327 ~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~K----LYSLvnLDl~~N~Ie~ldeV~~-IG~LPC 400 (490)
T KOG1259|consen 327 ELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNKIETLSGLRK----LYSLVNLDLSSNQIEELDEVNH-IGNLPC 400 (490)
T ss_pred hcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHh----hhhheeccccccchhhHHHhcc-cccccH
Confidence 4455555555543 2333333445677999999998776 5566654 44689999999988653 3444 578999
Q ss_pred CcEEEeecee---cCHHHHHHHH
Q 035790 102 MRFLWMSSCR---LTRQGCQEIA 121 (198)
Q Consensus 102 L~~L~L~~c~---iTd~gl~~La 121 (198)
|+.|.|.+++ +-|---+.++
T Consensus 401 LE~l~L~~NPl~~~vdYRTKVLa 423 (490)
T KOG1259|consen 401 LETLRLTGNPLAGSVDYRTKVLA 423 (490)
T ss_pred HHHHhhcCCCccccchHHHHHHH
Confidence 9999999998 3444444444
No 52
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=93.03 E-value=0.016 Score=57.57 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=42.3
Q ss_pred cEEEeeccCCChHHHHHHHhcCCCCceEEecCCC---CChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcE
Q 035790 53 RTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSP---FGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVV 129 (198)
Q Consensus 53 ~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~---~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~ 129 (198)
+.|.++.+..+|.-+..+ .+.++|+.|+|++|. |.+..+ .+++.|+.|+|+|++++.-. ..++ .|+.|++
T Consensus 362 q~LylanN~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~~Lp-~tva-~~~~L~t 434 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNKLTTLP-DTVA-NLGRLHT 434 (1081)
T ss_pred HHHHHhcCcccccchhhh-ccccceeeeeecccccccCCHHHH----hchHHhHHHhcccchhhhhh-HHHH-hhhhhHH
Confidence 334444444466666543 567788888888873 555543 35677888888888744433 2222 3455544
Q ss_pred EEec
Q 035790 130 EVIR 133 (198)
Q Consensus 130 ~~i~ 133 (198)
+...
T Consensus 435 L~ah 438 (1081)
T KOG0618|consen 435 LRAH 438 (1081)
T ss_pred Hhhc
Confidence 4433
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.35 E-value=0.22 Score=41.87 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=49.6
Q ss_pred CCHHHHHHHHh--cCCCCcEEEeeccCC--ChHHHHHHHhcCCCCceEEecCCCCChHH-HHHHHhcCCCCcEEEeecee
Q 035790 37 LTDRAFGYIGK--YGKLIRTLSVAFAGD--SDMGLKYVLEGCPKLQKLEIRDSPFGDAA-LRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 37 lTD~~L~~I~~--~~~~L~~L~L~~c~~--tD~gl~~i~~~C~~L~~L~L~~c~~tD~~-l~~i~~~~~~L~~L~L~~c~ 111 (198)
+||..+..+.. +.++|++|.|+++.. -|.++..+ .++|+.|.+.+|.+-.-| +.- ...||+|++|.+-++.
T Consensus 49 LtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 49 LTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP 124 (233)
T ss_pred ccccchhhcccCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence 35555555432 456777777777666 34444443 456777777766443222 222 2356677777777776
Q ss_pred cCHHH-HH-HHHHhCCCCcEEEec
Q 035790 112 LTRQG-CQ-EIAQAMPRLVVEVIR 133 (198)
Q Consensus 112 iTd~g-l~-~La~~~p~L~~~~i~ 133 (198)
++... .+ .+.-..|+|++....
T Consensus 125 v~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 125 VEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred hhcccCceeEEEEecCcceEeehh
Confidence 65542 21 233344555544443
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.02 E-value=0.069 Score=48.32 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=36.5
Q ss_pred cCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCH
Q 035790 48 YGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTR 114 (198)
Q Consensus 48 ~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd 114 (198)
.+++|+.|+|+++.. +-.|+..+ +.|+.|++++|.+++-.-. ..++.|+.++++++++++
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~l~~l----~~L~~L~l~~N~i~~~~~~---~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEGLSTL----TLLKELNLSGNLISDISGL---ESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred hhhcchheeccccccccccchhhc----cchhhheeccCcchhccCC---ccchhhhcccCCcchhhh
Confidence 567777777777776 55555443 3377777777766543311 126666677777776444
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=89.71 E-value=0.25 Score=41.52 Aligned_cols=82 Identities=11% Similarity=0.064 Sum_probs=57.5
Q ss_pred CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCC
Q 035790 49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRL 127 (198)
Q Consensus 49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L 127 (198)
..++..++|..+.. +......+.+.|..|.+.+|.|++-+ ..+..-.++|..|.+.+++ .--..+.-++ .||.|
T Consensus 41 ~d~~d~iDLtdNdl---~~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L 115 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDL---RKLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKL 115 (233)
T ss_pred ccccceecccccch---hhcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhc-cCCcc
Confidence 45666677765433 22233456889999999999887543 2234457889999999999 4445577777 79999
Q ss_pred cEEEecCC
Q 035790 128 VVEVIRSD 135 (198)
Q Consensus 128 ~~~~i~~~ 135 (198)
+...+-++
T Consensus 116 ~~Ltll~N 123 (233)
T KOG1644|consen 116 EYLTLLGN 123 (233)
T ss_pred ceeeecCC
Confidence 87777665
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=89.63 E-value=0.13 Score=50.38 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=20.3
Q ss_pred CCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790 75 PKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 75 ~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~ 111 (198)
+.|+.|+|+.|.|++.. ....|++|++|||+.|.
T Consensus 187 ~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNC 220 (1096)
T ss_pred HHhhhhccchhhhhhhH---HHHhcccccccccccch
Confidence 35666666666666554 13456666666666664
No 57
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=88.92 E-value=0.36 Score=47.74 Aligned_cols=9 Identities=33% Similarity=0.305 Sum_probs=4.9
Q ss_pred CCCCceeEe
Q 035790 25 CRKLTRLAV 33 (198)
Q Consensus 25 c~~L~~L~L 33 (198)
.++|++|++
T Consensus 241 p~~Lk~LdL 249 (788)
T PRK15387 241 PPELRTLEV 249 (788)
T ss_pred CCCCcEEEe
Confidence 345555555
No 58
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=88.74 E-value=0.24 Score=48.98 Aligned_cols=54 Identities=17% Similarity=0.040 Sum_probs=28.5
Q ss_pred CCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecC
Q 035790 50 KLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLT 113 (198)
Q Consensus 50 ~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iT 113 (198)
.+|+.|+++++..+. +. ...++|+.|++++|.++. + ..-..+|+.|++++|.++
T Consensus 382 ~~L~~LdLs~N~Lt~--LP---~l~s~L~~LdLS~N~Lss--I---P~l~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 382 SGLKELIVSGNRLTS--LP---VLPSELKELMVSGNRLTS--L---PMLPSGLLSLSVYRNQLT 435 (788)
T ss_pred cccceEEecCCcccC--CC---CcccCCCEEEccCCcCCC--C---CcchhhhhhhhhccCccc
Confidence 467777777665431 11 113467777777776542 1 111234555666665543
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.43 E-value=0.099 Score=47.31 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=61.5
Q ss_pred HhhCCCCceeEecC-CCC-HHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhc
Q 035790 22 VRNCRKLTRLAVSG-LLT-DRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHH 98 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lT-D~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~ 98 (198)
...+++|+.|++++ .|+ -.++.. ++.|+.|++.++.. +-.++.. +++|+.++++++.+++-.-.. ..+
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~~~~~----l~~L~~l~l~~n~i~~ie~~~-~~~ 184 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGNLISDISGLES----LKSLKLLDLSYNRIVDIENDE-LSE 184 (414)
T ss_pred hhhhhcchheeccccccccccchhh----ccchhhheeccCcchhccCCcc----chhhhcccCCcchhhhhhhhh-hhh
Confidence 45689999999965 333 234443 44599999999887 3334433 789999999999877655422 467
Q ss_pred CCCCcEEEeecee-cCHHHHH
Q 035790 99 YYNMRFLWMSSCR-LTRQGCQ 118 (198)
Q Consensus 99 ~~~L~~L~L~~c~-iTd~gl~ 118 (198)
+.+|+.+++.++. ..-.++.
T Consensus 185 ~~~l~~l~l~~n~i~~i~~~~ 205 (414)
T KOG0531|consen 185 LISLEELDLGGNSIREIEGLD 205 (414)
T ss_pred ccchHHHhccCCchhcccchH
Confidence 8899999999998 3334444
No 60
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.33 E-value=0.36 Score=24.08 Aligned_cols=12 Identities=17% Similarity=0.553 Sum_probs=4.5
Q ss_pred CCceEEecCCCC
Q 035790 76 KLQKLEIRDSPF 87 (198)
Q Consensus 76 ~L~~L~L~~c~~ 87 (198)
+|++|+|++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 445555555443
No 61
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=87.02 E-value=0.12 Score=50.13 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=35.9
Q ss_pred CCCcEEEeeccCC--ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790 50 KLIRTLSVAFAGD--SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 50 ~~L~~L~L~~c~~--tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~ 111 (198)
.||..++++.+.. -.+.+ -+.++|++|+|+++.|++-.+-. ....+|++|+|+.++
T Consensus 222 ~NL~dvDlS~N~Lp~vPecl----y~l~~LrrLNLS~N~iteL~~~~--~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLPIVPECL----YKLRNLRRLNLSGNKITELNMTE--GEWENLETLNLSRNQ 279 (1255)
T ss_pred hhhhhccccccCCCcchHHH----hhhhhhheeccCcCceeeeeccH--HHHhhhhhhccccch
Confidence 4555555555433 12222 24578888999888887765432 456788899999888
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=86.75 E-value=0.096 Score=41.76 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=55.7
Q ss_pred HHHHHHHhhCCC---CceeEecCC----CCHHHHHHHHhcCCCCcEEEeeccCCChHHHH----HHHhcCCCCceEEecC
Q 035790 16 EGFGAIVRNCRK---LTRLAVSGL----LTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLK----YVLEGCPKLQKLEIRD 84 (198)
Q Consensus 16 ~g~~ai~~~c~~---L~~L~L~g~----lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~----~i~~~C~~L~~L~L~~ 84 (198)
.|+..++++|.. +-.++|+.. +-|. +..+. ....|+..+|+. .+++ .+....+.++.|++++
T Consensus 14 rgV~evVercedakE~h~ldLssc~lm~i~da-vy~l~-~~~el~~i~ls~-----N~fk~fp~kft~kf~t~t~lNl~~ 86 (177)
T KOG4579|consen 14 RGVNEVVERCEDAKELHFLDLSSCQLMYIADA-VYMLS-KGYELTKISLSD-----NGFKKFPKKFTIKFPTATTLNLAN 86 (177)
T ss_pred hhHHHHHHhhHHHHHhhhcccccchhhHHHHH-HHHHh-CCceEEEEeccc-----chhhhCCHHHhhccchhhhhhcch
Confidence 567777777753 444444321 2232 23333 345666666655 4555 4455567888888888
Q ss_pred CCCChHHHHHHHhcCCCCcEEEeeceecC
Q 035790 85 SPFGDAALRSGLHHYYNMRFLWMSSCRLT 113 (198)
Q Consensus 85 c~~tD~~l~~i~~~~~~L~~L~L~~c~iT 113 (198)
+.++|--.+ ...++.||+|+++.++++
T Consensus 87 neisdvPeE--~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 87 NEISDVPEE--LAAMPALRSLNLRFNPLN 113 (177)
T ss_pred hhhhhchHH--HhhhHHhhhcccccCccc
Confidence 888877655 346888888888888754
No 63
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=86.13 E-value=0.76 Score=46.11 Aligned_cols=77 Identities=19% Similarity=0.134 Sum_probs=34.3
Q ss_pred CCCCcEEEeeccCCC--hHHHHHHHhcCCCCceEEecCCC-C-ChHHHHHHHhcCCCCcEEEeecee--cCHHHHHHHHH
Q 035790 49 GKLIRTLSVAFAGDS--DMGLKYVLEGCPKLQKLEIRDSP-F-GDAALRSGLHHYYNMRFLWMSSCR--LTRQGCQEIAQ 122 (198)
Q Consensus 49 ~~~L~~L~L~~c~~t--D~gl~~i~~~C~~L~~L~L~~c~-~-tD~~l~~i~~~~~~L~~L~L~~c~--iTd~gl~~La~ 122 (198)
.-+|+.|++..+..+ ..|+.. +++|.+|++..+. . +- ..+...+.+||+|.+..-. .+..-+..+ .
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~----Lk~L~~Lnl~~~~~l~~~---~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~ 665 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGN----LKKLIYLNLEVTGRLESI---PGILLELQSLRVLRLPRSALSNDKLLLKEL-E 665 (889)
T ss_pred hhhhhcccccCCCccccchHHHH----HHhhheeccccccccccc---cchhhhcccccEEEeeccccccchhhHHhh-h
Confidence 345555555554442 233322 3355555555441 1 11 1223346677777766654 222223333 3
Q ss_pred hCCCCcEEEec
Q 035790 123 AMPRLVVEVIR 133 (198)
Q Consensus 123 ~~p~L~~~~i~ 133 (198)
...+|+...+.
T Consensus 666 ~Le~L~~ls~~ 676 (889)
T KOG4658|consen 666 NLEHLENLSIT 676 (889)
T ss_pred cccchhhheee
Confidence 44555544443
No 64
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.98 E-value=1.8 Score=41.18 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=68.0
Q ss_pred CcHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCC---ChHHHHHHHhcCCCCceEEecCCCC
Q 035790 13 PMDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGD---SDMGLKYVLEGCPKLQKLEIRDSPF 87 (198)
Q Consensus 13 ~~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~---tD~gl~~i~~~C~~L~~L~L~~c~~ 87 (198)
.|-..+..+....|.+..++|+. +..=+.+..|++..|+|+.|+|+.+.. ++.-+..+ +-..|++|-+.+|++
T Consensus 205 ~M~~~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 205 CMAAVLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPL 282 (585)
T ss_pred hhHHHHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCcc
Confidence 45556677778899999999954 445577888999999999999999843 44455544 345699999999975
Q ss_pred ----ChHH--HHHHHhcCCCCcEEE
Q 035790 88 ----GDAA--LRSGLHHYYNMRFLW 106 (198)
Q Consensus 88 ----tD~~--l~~i~~~~~~L~~L~ 106 (198)
+|.+ +.+|-..+|+|..||
T Consensus 283 c~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 283 CTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred ccchhhhHHHHHHHHHhcchheeec
Confidence 4443 445567889998776
No 65
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.22 E-value=1.6 Score=40.47 Aligned_cols=41 Identities=29% Similarity=0.304 Sum_probs=24.2
Q ss_pred HHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccC
Q 035790 19 GAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAG 61 (198)
Q Consensus 19 ~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~ 61 (198)
.+++...++|..|+|+. .+.|--++ .+ ....|+.|+++++.
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~-~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLNDLPEE-MG-SLVRLQTLNLSFNR 469 (565)
T ss_pred hHHHHhhhcceeeecccchhhhcchh-hh-hhhhhheecccccc
Confidence 45566778888888854 33332222 22 13348888888753
No 66
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=84.19 E-value=0.043 Score=53.10 Aligned_cols=104 Identities=24% Similarity=0.261 Sum_probs=63.5
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHH-HHHhcCCCCceEEecCCCCChHHHH-------
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLK-YVLEGCPKLQKLEIRDSPFGDAALR------- 93 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~-~i~~~C~~L~~L~L~~c~~tD~~l~------- 93 (198)
...++|++|+|++ .+|.-.+. ++ .-.+|++|+++++..+. +- ++. ++++|++|-+.++.++=+|+-
T Consensus 242 y~l~~LrrLNLS~N~iteL~~~-~~-~W~~lEtLNlSrNQLt~--LP~avc-KL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITELNMT-EG-EWENLETLNLSRNQLTV--LPDAVC-KLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred hhhhhhheeccCcCceeeeecc-HH-HHhhhhhhccccchhcc--chHHHh-hhHHHHHHHhccCcccccCCccchhhhh
Confidence 4567888888866 34543332 33 35788888888876521 11 222 366788887777754433221
Q ss_pred ----------------HHHhcCCCCcEEEeecee-cCHH-HHHHHHHhCCCCcEEEecCC
Q 035790 94 ----------------SGLHHYYNMRFLWMSSCR-LTRQ-GCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 94 ----------------~i~~~~~~L~~L~L~~c~-iTd~-gl~~La~~~p~L~~~~i~~~ 135 (198)
.....|..|+.|.|+.++ ||-- |+. -.|.|+++.+.++
T Consensus 317 ~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIH----lL~~l~vLDlreN 372 (1255)
T KOG0444|consen 317 QLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIH----LLPDLKVLDLREN 372 (1255)
T ss_pred hhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhh----hcCCcceeeccCC
Confidence 113578889999999998 7753 433 3466777666655
No 67
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=82.19 E-value=3.2 Score=37.20 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=44.6
Q ss_pred CHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcC---CCCceEEecCCCCChH---HHHHHHhcCCCCcEEEeece
Q 035790 38 TDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGC---PKLQKLEIRDSPFGDA---ALRSGLHHYYNMRFLWMSSC 110 (198)
Q Consensus 38 TD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C---~~L~~L~L~~c~~tD~---~l~~i~~~~~~L~~L~L~~c 110 (198)
+++.++-|...-++|+..+|..... +-.-+..++... ...+...+.+-..+|. ++.....-++.|++|++.++
T Consensus 186 ~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesn 265 (353)
T KOG3735|consen 186 VESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESN 265 (353)
T ss_pred HHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccc
Confidence 4555666665556666666655554 444444444332 2233334433334443 23333455566666666666
Q ss_pred ecCHHHHHHHHHhC
Q 035790 111 RLTRQGCQEIAQAM 124 (198)
Q Consensus 111 ~iTd~gl~~La~~~ 124 (198)
-||..|+-++.+..
T Consensus 266 FItg~gi~a~~~al 279 (353)
T KOG3735|consen 266 FITGLGIMALLRAL 279 (353)
T ss_pred ccccHHHHHHHHHH
Confidence 66666666655443
No 68
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=82.17 E-value=0.84 Score=45.82 Aligned_cols=59 Identities=20% Similarity=0.148 Sum_probs=29.1
Q ss_pred CCCCcEEEeeccCC--ChHHHHHHHhcCCCCceEEecCCC-CChHHHHHHHhcCCCCcEEEeece
Q 035790 49 GKLIRTLSVAFAGD--SDMGLKYVLEGCPKLQKLEIRDSP-FGDAALRSGLHHYYNMRFLWMSSC 110 (198)
Q Consensus 49 ~~~L~~L~L~~c~~--tD~gl~~i~~~C~~L~~L~L~~c~-~tD~~l~~i~~~~~~L~~L~L~~c 110 (198)
.++|.+|++.++.. +- ..+....++||.|.+.... -.|..+..-..++++|+.|.....
T Consensus 617 Lk~L~~Lnl~~~~~l~~~---~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESI---PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred HHhhheeccccccccccc---cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 34556666666554 22 2333446677777776553 222222222355555555555433
No 69
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=81.74 E-value=0.67 Score=42.60 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=48.7
Q ss_pred HhhCCCCceeEecC-CC---CHHHHHHHHhcCCCCcEEEeeccCC-C-hHHHHHHHhcCCCCceEEecCCCCChHHHHHH
Q 035790 22 VRNCRKLTRLAVSG-LL---TDRAFGYIGKYGKLIRTLSVAFAGD-S-DMGLKYVLEGCPKLQKLEIRDSPFGDAALRSG 95 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~l---TD~~L~~I~~~~~~L~~L~L~~c~~-t-D~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i 95 (198)
.+..++|++|+|++ .+ -|..|+ ....+++|.|..+.. . ..| +.++...|+.|+|++++||--+-.+
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe----~~a~l~eL~L~~N~l~~v~~~---~f~~ls~L~tL~L~~N~it~~~~~a- 341 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFE----GAAELQELYLTRNKLEFVSSG---MFQGLSGLKTLSLYDNQITTVAPGA- 341 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhc----chhhhhhhhcCcchHHHHHHH---hhhccccceeeeecCCeeEEEeccc-
Confidence 56778888888855 22 333443 344677777766554 1 112 2356777888888888765433222
Q ss_pred HhcCCCCcEEEeecee
Q 035790 96 LHHYYNMRFLWMSSCR 111 (198)
Q Consensus 96 ~~~~~~L~~L~L~~c~ 111 (198)
.....+|.+|++-++.
T Consensus 342 F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNP 357 (498)
T ss_pred ccccceeeeeehccCc
Confidence 2456677777776655
No 70
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=81.69 E-value=0.7 Score=40.96 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=34.1
Q ss_pred CCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceec
Q 035790 51 LIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL 112 (198)
Q Consensus 51 ~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~i 112 (198)
+|+.|+++++...+.- .. ...+++|+.|++++|++++-.-.. ...+.|+.|+++++.+
T Consensus 141 nL~~L~l~~N~i~~l~-~~-~~~l~~L~~L~l~~N~l~~l~~~~--~~~~~L~~L~ls~N~i 198 (394)
T COG4886 141 NLKELDLSDNKIESLP-SP-LRNLPNLKNLDLSFNDLSDLPKLL--SNLSNLNNLDLSGNKI 198 (394)
T ss_pred hcccccccccchhhhh-hh-hhccccccccccCCchhhhhhhhh--hhhhhhhheeccCCcc
Confidence 6777777665442210 11 245777777777777766654221 2566677777777763
No 71
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=80.80 E-value=1.1 Score=41.16 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=13.6
Q ss_pred HhcCCCCcEEEeeceecC
Q 035790 96 LHHYYNMRFLWMSSCRLT 113 (198)
Q Consensus 96 ~~~~~~L~~L~L~~c~iT 113 (198)
...+..|+.|+|.+++||
T Consensus 318 f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred hhccccceeeeecCCeeE
Confidence 356778888888888844
No 72
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=80.32 E-value=2.4 Score=23.42 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=14.5
Q ss_pred CCcEEEeecee-cCHHHHHHHHHhCC
Q 035790 101 NMRFLWMSSCR-LTRQGCQEIAQAMP 125 (198)
Q Consensus 101 ~L~~L~L~~c~-iTd~gl~~La~~~p 125 (198)
+|++|.|.... -.++.++.+..+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 36666666666 33335666666665
No 73
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=80.18 E-value=3.3 Score=40.93 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=59.2
Q ss_pred CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHH-HHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCc
Q 035790 26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLK-YVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMR 103 (198)
Q Consensus 26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~-~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~ 103 (198)
++|+.|.+++ .++. +. ...+++|+.|++++|..+. +. .+ .++|+.|+|++|.++.-- ..+. ++|+
T Consensus 325 ~sL~~L~Ls~N~Lt~--LP--~~l~~sL~~L~Ls~N~L~~--LP~~l---p~~L~~LdLs~N~Lt~LP-~~l~---~sL~ 391 (754)
T PRK15370 325 PGLKTLEAGENALTS--LP--ASLPPELQVLDVSKNQITV--LPETL---PPTITTLDVSRNALTNLP-ENLP---AALQ 391 (754)
T ss_pred ccceeccccCCcccc--CC--hhhcCcccEEECCCCCCCc--CChhh---cCCcCEEECCCCcCCCCC-HhHH---HHHH
Confidence 5788888844 2221 11 0124799999999987631 11 12 268999999999765311 0111 2588
Q ss_pred EEEeeceecCH--HHHHHHHHhCCCCcEEEecCC
Q 035790 104 FLWMSSCRLTR--QGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 104 ~L~L~~c~iTd--~gl~~La~~~p~L~~~~i~~~ 135 (198)
.|++++|+++. ..+..+....|.+....+..+
T Consensus 392 ~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 392 IMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred HHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence 88999888542 245555555677776666665
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=77.68 E-value=1.4 Score=23.17 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=9.0
Q ss_pred CCcEEEeeceecC
Q 035790 101 NMRFLWMSSCRLT 113 (198)
Q Consensus 101 ~L~~L~L~~c~iT 113 (198)
+|++|+|++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4677777777754
No 75
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=76.02 E-value=4 Score=40.36 Aligned_cols=57 Identities=19% Similarity=0.081 Sum_probs=39.1
Q ss_pred CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecC
Q 035790 49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLT 113 (198)
Q Consensus 49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iT 113 (198)
.++|+.|++++|..+. +.. .-+++|+.|++++|.|+.-- ..+ .++|++|+|++|.++
T Consensus 324 ~~sL~~L~Ls~N~Lt~--LP~--~l~~sL~~L~Ls~N~L~~LP-~~l---p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 324 PPGLKTLEAGENALTS--LPA--SLPPELQVLDVSKNQITVLP-ETL---PPTITTLDVSRNALT 380 (754)
T ss_pred cccceeccccCCcccc--CCh--hhcCcccEEECCCCCCCcCC-hhh---cCCcCEEECCCCcCC
Confidence 3689999998887632 111 11479999999999776311 111 358999999999854
No 76
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=75.22 E-value=12 Score=33.54 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=66.9
Q ss_pred HHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHh---cCCCCcEEEeeccCCCh---HHHHHHHhcCCCCceEEecCCC
Q 035790 15 DEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGK---YGKLIRTLSVAFAGDSD---MGLKYVLEGCPKLQKLEIRDSP 86 (198)
Q Consensus 15 D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~---~~~~L~~L~L~~c~~tD---~gl~~i~~~C~~L~~L~L~~c~ 86 (198)
+..+.-|-..=++|+..+|+. .|+...+...+. ..+..+.+++.....+| .++....+-|+.|++|++.++.
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnF 266 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNF 266 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccc
Confidence 344455444457999999943 356666665544 45678888888877644 4566667889999999999999
Q ss_pred CChHHHHHHHhcC---CCCcEEEeece
Q 035790 87 FGDAALRSGLHHY---YNMRFLWMSSC 110 (198)
Q Consensus 87 ~tD~~l~~i~~~~---~~L~~L~L~~c 110 (198)
||-.|+.++...+ .+|..|.+..-
T Consensus 267 Itg~gi~a~~~al~~n~tl~el~~dnq 293 (353)
T KOG3735|consen 267 ITGLGIMALLRALQSNKSLTELKNDNQ 293 (353)
T ss_pred cccHHHHHHHHHHhccchhhHhhhhhH
Confidence 9999998875443 45555555443
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=74.01 E-value=2.9 Score=33.51 Aligned_cols=136 Identities=15% Similarity=0.086 Sum_probs=78.1
Q ss_pred CCCcEEEeeccCC--ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCC
Q 035790 50 KLIRTLSVAFAGD--SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL 127 (198)
Q Consensus 50 ~~L~~L~L~~c~~--tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L 127 (198)
+.+..++|+.|.. --+.+..+. +-..|++.+|++|.|-+-- ..+....+.++.|+|+.+++++--.+ +| .+|.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~-~~~el~~i~ls~N~fk~fp-~kft~kf~t~t~lNl~~neisdvPeE-~A-am~aL 102 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLS-KGYELTKISLSDNGFKKFP-KKFTIKFPTATTLNLANNEISDVPEE-LA-AMPAL 102 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHh-CCceEEEEecccchhhhCC-HHHhhccchhhhhhcchhhhhhchHH-Hh-hhHHh
Confidence 5677788888876 334444444 4567888888888543322 23455677899999999998887766 44 57877
Q ss_pred cEEEecCCCCchhHhHHHHHhHhhhc---cCCCCCCCCcceeecccCCc---ccccccccCCChhhhhhhc
Q 035790 128 VVEVIRSDDEEETDNYVETLYMYRSL---EGPRHDAPKFVTILRIIKPK---LMLVQIKFAEPSDVCQKWG 192 (198)
Q Consensus 128 ~~~~i~~~~~~~~~~~~~~~~~y~sl---~g~r~d~p~~v~~l~~~~~~---~~~l~~~~~~~~~~~~~~~ 192 (198)
+...+.-+.-....+-+.++..+-.| .|.|...|-- .+||.-.- +-.-|++.-+|-+ -|.||
T Consensus 103 r~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d--l~~s~~~al~~lgnepl~~~~~~k-lqa~k 170 (177)
T KOG4579|consen 103 RSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD--LFYSSLPALIKLGNEPLGDETKKK-LQALK 170 (177)
T ss_pred hhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH--HhccccHHHHHhcCCcccccCccc-ccccC
Confidence 76555543111222334445444444 4555555422 45544332 2333444444433 25566
No 78
>PRK15386 type III secretion protein GogB; Provisional
Probab=73.79 E-value=5.3 Score=36.90 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=51.5
Q ss_pred CCCCcHHHHHHHHhhCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCC-C-hHHHHHHHhcCCCCceEEecCC-C
Q 035790 10 TGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGD-S-DMGLKYVLEGCPKLQKLEIRDS-P 86 (198)
Q Consensus 10 t~~~~D~g~~ai~~~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~-t-D~gl~~i~~~C~~L~~L~L~~c-~ 86 (198)
..+.-++.+..| +.|+++++|++++. .|..+-.--.+|++|.+++|.. + -.+ .+ .++|++|++++| .
T Consensus 37 ~~e~r~~a~~r~-~~~~~l~~L~Is~c----~L~sLP~LP~sLtsL~Lsnc~nLtsLP~--~L---P~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 37 SAEIRSEITPQI-EEARASGRLYIKDC----DIESLPVLPNELTEITIENCNNLTTLPG--SI---PEGLEKLTVCHCPE 106 (426)
T ss_pred chHHHHHHHHHH-HHhcCCCEEEeCCC----CCcccCCCCCCCcEEEccCCCCcccCCc--hh---hhhhhheEccCccc
Confidence 344445556553 56899999999653 2333333345799999988876 1 111 11 257899999988 4
Q ss_pred CChHHHHHHHhcCCCCcEEEeecee
Q 035790 87 FGDAALRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 87 ~tD~~l~~i~~~~~~L~~L~L~~c~ 111 (198)
++ .+ -++|++|.++++.
T Consensus 107 L~-----sL---P~sLe~L~L~~n~ 123 (426)
T PRK15386 107 IS-----GL---PESVRSLEIKGSA 123 (426)
T ss_pred cc-----cc---ccccceEEeCCCC
Confidence 43 12 2357777776543
No 79
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=70.80 E-value=2.1 Score=37.90 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=49.3
Q ss_pred CCCceeEecCCCCHHHH-HHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790 26 RKLTRLAVSGLLTDRAF-GYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF 104 (198)
Q Consensus 26 ~~L~~L~L~g~lTD~~L-~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~ 104 (198)
++|+.|++++. .-..+ ..+. .+++|+.|+++++..++-.-.. ...++|+.|+++++.+++---. ......|++
T Consensus 140 ~nL~~L~l~~N-~i~~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~--~~~~~L~~L~ls~N~i~~l~~~--~~~~~~L~~ 213 (394)
T COG4886 140 SNLKELDLSDN-KIESLPSPLR-NLPNLKNLDLSFNDLSDLPKLL--SNLSNLNNLDLSGNKISDLPPE--IELLSALEE 213 (394)
T ss_pred hhccccccccc-chhhhhhhhh-ccccccccccCCchhhhhhhhh--hhhhhhhheeccCCccccCchh--hhhhhhhhh
Confidence 36777777543 22222 2344 6899999999988775543321 1578899999998876553321 123444777
Q ss_pred EEeecee
Q 035790 105 LWMSSCR 111 (198)
Q Consensus 105 L~L~~c~ 111 (198)
|++++++
T Consensus 214 l~~~~N~ 220 (394)
T COG4886 214 LDLSNNS 220 (394)
T ss_pred hhhcCCc
Confidence 7777773
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=59.64 E-value=6 Score=21.18 Aligned_cols=14 Identities=36% Similarity=0.304 Sum_probs=10.1
Q ss_pred CCCCcEEEeeceec
Q 035790 99 YYNMRFLWMSSCRL 112 (198)
Q Consensus 99 ~~~L~~L~L~~c~i 112 (198)
+++|++|+|++|++
T Consensus 1 L~~L~~L~L~~N~l 14 (26)
T smart00369 1 LPNLRELDLSNNQL 14 (26)
T ss_pred CCCCCEEECCCCcC
Confidence 35778888888764
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=59.64 E-value=6 Score=21.18 Aligned_cols=14 Identities=36% Similarity=0.304 Sum_probs=10.1
Q ss_pred CCCCcEEEeeceec
Q 035790 99 YYNMRFLWMSSCRL 112 (198)
Q Consensus 99 ~~~L~~L~L~~c~i 112 (198)
+++|++|+|++|++
T Consensus 1 L~~L~~L~L~~N~l 14 (26)
T smart00370 1 LPNLRELDLSNNQL 14 (26)
T ss_pred CCCCCEEECCCCcC
Confidence 35778888888764
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=54.47 E-value=8.6 Score=21.34 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=10.7
Q ss_pred CCCcEEEeeceecC
Q 035790 100 YNMRFLWMSSCRLT 113 (198)
Q Consensus 100 ~~L~~L~L~~c~iT 113 (198)
++|+.|||+.++|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 57888888888763
No 83
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=53.62 E-value=0.38 Score=39.87 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=36.1
Q ss_pred cCCCCcEEEeeccCC--ChHHHHHHHhcCCCCceEEecCCCCChHH----------HHH----------H---HhcCCCC
Q 035790 48 YGKLIRTLSVAFAGD--SDMGLKYVLEGCPKLQKLEIRDSPFGDAA----------LRS----------G---LHHYYNM 102 (198)
Q Consensus 48 ~~~~L~~L~L~~c~~--tD~gl~~i~~~C~~L~~L~L~~c~~tD~~----------l~~----------i---~~~~~~L 102 (198)
..++|+.|+++-+.. ...|+- ..|.|+.||+.++.+++.. +.+ + +.++++|
T Consensus 77 sl~klr~lnvgmnrl~~lprgfg----s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~l 152 (264)
T KOG0617|consen 77 SLPKLRILNVGMNRLNILPRGFG----SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNL 152 (264)
T ss_pred hchhhhheecchhhhhcCccccC----CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcce
Confidence 356666666665433 333432 3577888888877655431 111 1 4567788
Q ss_pred cEEEeecee
Q 035790 103 RFLWMSSCR 111 (198)
Q Consensus 103 ~~L~L~~c~ 111 (198)
+-|.+..+.
T Consensus 153 qil~lrdnd 161 (264)
T KOG0617|consen 153 QILSLRDND 161 (264)
T ss_pred eEEeeccCc
Confidence 888888777
No 84
>PRK15386 type III secretion protein GogB; Provisional
Probab=38.23 E-value=20 Score=33.25 Aligned_cols=64 Identities=11% Similarity=0.035 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcC-CCCceEEecCC-CCChHHHHHHHhcCCCCcEEEeecee-cC
Q 035790 39 DRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGC-PKLQKLEIRDS-PFGDAALRSGLHHYYNMRFLWMSSCR-LT 113 (198)
Q Consensus 39 D~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C-~~L~~L~L~~c-~~tD~~l~~i~~~~~~L~~L~L~~c~-iT 113 (198)
+++..-|- .|++++.|++++|..+ .+- .. ++|++|.+++| .++.-- ..+ .++|++|++++|. ++
T Consensus 42 ~~a~~r~~-~~~~l~~L~Is~c~L~-----sLP-~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 42 SEITPQIE-EARASGRLYIKDCDIE-----SLP-VLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCPEIS 108 (426)
T ss_pred HHHHHHHH-HhcCCCEEEeCCCCCc-----ccC-CCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCccccc
Confidence 34444443 4799999999999542 222 23 36999999998 432110 011 2589999999995 53
No 85
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=35.83 E-value=2.4e+02 Score=25.72 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCCCcEEEeeccCC---ChHHHHHHHhcCCC---CceEEecC-----C--CCChHHHHHHHh-cCCCCcE
Q 035790 39 DRAFGYIGKYGKLIRTLSVAFAGD---SDMGLKYVLEGCPK---LQKLEIRD-----S--PFGDAALRSGLH-HYYNMRF 104 (198)
Q Consensus 39 D~~L~~I~~~~~~L~~L~L~~c~~---tD~gl~~i~~~C~~---L~~L~L~~-----c--~~tD~~l~~i~~-~~~~L~~ 104 (198)
|.+|.||+++ |.++..-+++-.- +|.-+..|.+.+.. ++.+.+.- . .|||+-.+.+.+ ..+-.-.
T Consensus 147 ~~al~YIa~h-PeI~eVllSGGDPL~ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~ 225 (369)
T COG1509 147 DKALDYIAAH-PEIREVLLSGGDPLSLSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLV 225 (369)
T ss_pred HHHHHHHHcC-chhheEEecCCCccccCHHHHHHHHHHHhcCCceeEEEeecccceechhhccHHHHHHHhccCceEEEE
Confidence 6789999964 8888888876432 89999888877654 44444421 1 256655444433 2222222
Q ss_pred EEeecee-cCHHHHHHHHHhCCCCcEEEecCC----CCchhHhHHHHHhHhhhccCCCCCCCCcceeecccCC
Q 035790 105 LWMSSCR-LTRQGCQEIAQAMPRLVVEVIRSD----DEEETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKP 172 (198)
Q Consensus 105 L~L~~c~-iTd~gl~~La~~~p~L~~~~i~~~----~~~~~~~~~~~~~~y~sl~g~r~d~p~~v~~l~~~~~ 172 (198)
..+..++ ||.+..+++.+- ..-.+-+.+.. |++++.+...++.. .|.--+ ..|-|+..+.++-.
T Consensus 226 tH~NHp~Eit~e~~~A~~~L-~~aGv~l~NQsVLLrGVND~~evl~~L~~--~L~~~g-V~PYYl~~~D~~~G 294 (369)
T COG1509 226 THFNHPNEITPEAREACAKL-RDAGVPLLNQSVLLRGVNDDPEVLKELSR--ALFDAG-VKPYYLHQLDLVQG 294 (369)
T ss_pred cccCChhhcCHHHHHHHHHH-HHcCceeecchheecccCCCHHHHHHHHH--HHHHcC-CcceEEeccCccCC
Confidence 3344555 998876666532 11122222211 33444444444422 222222 66777777766654
No 86
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=35.59 E-value=20 Score=33.43 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=7.4
Q ss_pred hcCCCCceEEecCCC
Q 035790 72 EGCPKLQKLEIRDSP 86 (198)
Q Consensus 72 ~~C~~L~~L~L~~c~ 86 (198)
++.+.|..||++++.
T Consensus 249 ~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDNK 263 (565)
T ss_pred cccccceeeeccccc
Confidence 344455555555553
No 87
>PF07557 Shugoshin_C: Shugoshin C terminus; InterPro: IPR011515 This entry represents the C-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011516 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=34.94 E-value=16 Score=20.42 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=7.5
Q ss_pred ccccCCChhh
Q 035790 178 QIKFAEPSDV 187 (198)
Q Consensus 178 ~~~~~~~~~~ 187 (198)
..||+||+-.
T Consensus 11 ~VsYkEPsL~ 20 (26)
T PF07557_consen 11 KVSYKEPSLN 20 (26)
T ss_pred cccccccchh
Confidence 4599999853
No 88
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=27.78 E-value=15 Score=26.52 Aligned_cols=80 Identities=15% Similarity=0.266 Sum_probs=35.6
Q ss_pred hhCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC--CCChHHHHHHHhcCC
Q 035790 23 RNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS--PFGDAALRSGLHHYY 100 (198)
Q Consensus 23 ~~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c--~~tD~~l~~i~~~~~ 100 (198)
.+|++|+.+.+...++. .=......|++|+.+.+...-.+ -+-.. ..+|++|+.+.+... .+.+.. -.+|+
T Consensus 9 ~~~~~l~~i~~~~~~~~-I~~~~F~~~~~l~~i~~~~~~~~-i~~~~-F~~~~~l~~i~~~~~~~~i~~~~----F~~~~ 81 (129)
T PF13306_consen 9 YNCSNLESITFPNTIKK-IGENAFSNCTSLKSINFPNNLTS-IGDNA-FSNCKSLESITFPNNLKSIGDNA----FSNCT 81 (129)
T ss_dssp TT-TT--EEEETST--E-E-TTTTTT-TT-SEEEESSTTSC-E-TTT-TTT-TT-EEEEETSTT-EE-TTT----TTT-T
T ss_pred hCCCCCCEEEECCCeeE-eChhhcccccccccccccccccc-cceee-eeccccccccccccccccccccc----ccccc
Confidence 46778888877432121 00111235677888877653221 11111 245777888888654 234332 24577
Q ss_pred CCcEEEeec
Q 035790 101 NMRFLWMSS 109 (198)
Q Consensus 101 ~L~~L~L~~ 109 (198)
+|+.+++..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 788888754
No 89
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=24.16 E-value=2.1e+02 Score=18.55 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=15.0
Q ss_pred ceEEecCCCCChHHHHH-----HHhcCCCCcEEEe
Q 035790 78 QKLEIRDSPFGDAALRS-----GLHHYYNMRFLWM 107 (198)
Q Consensus 78 ~~L~L~~c~~tD~~l~~-----i~~~~~~L~~L~L 107 (198)
+.+.+..+.++++.+.. +....++|++|.+
T Consensus 35 ~~i~l~~~~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 35 KKIELWNSKFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 34455555565555432 2335555665544
No 90
>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []. It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.
Probab=23.64 E-value=29 Score=30.70 Aligned_cols=11 Identities=45% Similarity=1.289 Sum_probs=8.9
Q ss_pred hhhhhhcCCCC
Q 035790 186 DVCQKWGRGGA 196 (198)
Q Consensus 186 ~~~~~~~~~~~ 196 (198)
-.|-|||-||-
T Consensus 220 qqCYrWG~GGW 230 (301)
T PF06217_consen 220 QQCYRWGNGGW 230 (301)
T ss_pred ccccccCCCcc
Confidence 45889999994
No 91
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=21.22 E-value=2.1e+02 Score=22.20 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=24.6
Q ss_pred HHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC
Q 035790 45 IGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS 85 (198)
Q Consensus 45 I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c 85 (198)
|..-.++=+...|+|=. |+..+-.+.+.||+|+.+.+-..
T Consensus 12 I~~Ln~nE~~VHlAFRP-SN~Dif~Lv~~CP~lk~iqiP~S 51 (131)
T PF08004_consen 12 IETLNPNEEIVHLAFRP-SNKDIFSLVERCPNLKAIQIPPS 51 (131)
T ss_pred HhhcCCCceEEEEEecC-cchHHHHHHHhCCCCeEEeCChH
Confidence 44445666666666522 44555566677777777777544
No 92
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=20.58 E-value=83 Score=24.37 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=19.3
Q ss_pred CCCCCCcHHHHHHHHhhCCCCceeEe
Q 035790 8 HATGEPMDEGFGAIVRNCRKLTRLAV 33 (198)
Q Consensus 8 ~~t~~~~D~g~~ai~~~c~~L~~L~L 33 (198)
|+.-.|++..+-.+++.||+|+.+-+
T Consensus 23 HlAFRPSN~Dif~Lv~~CP~lk~iqi 48 (131)
T PF08004_consen 23 HLAFRPSNKDIFSLVERCPNLKAIQI 48 (131)
T ss_pred EEEecCcchHHHHHHHhCCCCeEEeC
Confidence 45556777777777778888887777
Done!