Query 035790
Match_columns 198
No_of_seqs 277 out of 1165
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.9 3.4E-25 1.2E-29 201.5 14.5 172 4-175 410-584 (594)
2 3ogk_B Coronatine-insensitive 99.9 1E-25 3.5E-30 205.1 11.1 164 6-169 416-590 (592)
3 3e4g_A ATP synthase subunit S, 99.7 5.4E-18 1.8E-22 136.3 8.1 105 25-131 60-173 (176)
4 2ast_B S-phase kinase-associat 99.6 1.6E-14 5.6E-19 122.5 15.1 171 13-185 105-285 (336)
5 3ogk_B Coronatine-insensitive 99.6 8.5E-14 2.9E-18 126.4 16.0 125 11-135 363-498 (592)
6 2p1m_B Transport inhibitor res 99.5 7.6E-14 2.6E-18 126.6 13.8 124 11-135 357-491 (594)
7 3e4g_A ATP synthase subunit S, 99.5 2.8E-14 9.5E-19 114.6 7.1 85 49-135 60-149 (176)
8 2ast_B S-phase kinase-associat 99.4 1E-12 3.6E-17 111.3 13.5 157 24-182 91-257 (336)
9 1io0_A Tropomodulin; LRR prote 99.4 7.5E-12 2.6E-16 99.6 15.9 122 14-135 24-161 (185)
10 3un9_A NLR family member X1; l 99.4 4E-12 1.4E-16 111.8 12.2 124 12-135 112-249 (372)
11 3un9_A NLR family member X1; l 99.3 1.2E-11 4.1E-16 108.8 13.5 123 13-135 84-221 (372)
12 1io0_A Tropomodulin; LRR prote 99.3 5E-11 1.7E-15 94.8 13.5 105 12-116 48-167 (185)
13 1z7x_W Ribonuclease inhibitor; 99.3 1.7E-11 5.7E-16 108.0 11.2 124 12-135 14-152 (461)
14 2ca6_A RAN GTPase-activating p 99.3 6.1E-11 2.1E-15 103.0 13.6 96 26-121 159-265 (386)
15 2ca6_A RAN GTPase-activating p 99.3 7.1E-11 2.4E-15 102.6 13.8 118 18-135 114-254 (386)
16 1z7x_W Ribonuclease inhibitor; 99.2 9.9E-11 3.4E-15 103.0 11.5 114 22-135 166-294 (461)
17 1pgv_A TMD-1, tropomodulin TMD 99.1 1.3E-09 4.3E-14 88.8 11.8 121 14-134 29-166 (197)
18 2ra8_A Uncharacterized protein 99.1 4.9E-10 1.7E-14 98.6 9.2 112 13-124 205-331 (362)
19 3goz_A Leucine-rich repeat-con 99.0 5.5E-10 1.9E-14 96.5 6.1 113 23-135 47-177 (362)
20 2ra8_A Uncharacterized protein 98.9 4.8E-09 1.7E-13 92.2 9.5 119 17-135 163-317 (362)
21 3goz_A Leucine-rich repeat-con 98.7 3.9E-08 1.3E-12 84.8 9.6 102 27-128 168-284 (362)
22 2je0_A Acidic leucine-rich nuc 98.7 1.2E-08 4.1E-13 77.0 4.8 83 48-134 40-122 (149)
23 1pgv_A TMD-1, tropomodulin TMD 98.7 7.4E-08 2.5E-12 78.3 8.8 121 14-134 3-135 (197)
24 4ezg_A Putative uncharacterize 98.6 8.3E-09 2.9E-13 81.7 2.4 106 22-135 62-169 (197)
25 2je0_A Acidic leucine-rich nuc 98.6 1.2E-08 4.2E-13 76.9 1.4 107 22-132 38-147 (149)
26 2ell_A Acidic leucine-rich nuc 98.5 3.3E-09 1.1E-13 81.7 -2.5 106 25-135 23-130 (168)
27 2ell_A Acidic leucine-rich nuc 98.5 1.8E-08 6.2E-13 77.4 0.7 110 22-135 45-157 (168)
28 4ezg_A Putative uncharacterize 98.5 2.4E-08 8.4E-13 79.0 1.0 149 24-183 42-192 (197)
29 1ds9_A Outer arm dynein; leuci 98.4 8.5E-09 2.9E-13 81.8 -3.4 105 22-135 44-150 (198)
30 4fmz_A Internalin; leucine ric 98.4 6.5E-07 2.2E-11 75.8 6.9 145 23-181 196-342 (347)
31 4glp_A Monocyte differentiatio 98.3 6E-08 2E-12 81.8 0.1 111 23-135 114-234 (310)
32 4glp_A Monocyte differentiatio 98.3 7.1E-07 2.4E-11 75.2 6.3 121 13-135 76-207 (310)
33 1wwl_A Monocyte differentiatio 98.3 1.9E-07 6.5E-12 78.9 2.7 112 23-135 118-238 (312)
34 1ds9_A Outer arm dynein; leuci 98.1 6.6E-07 2.2E-11 70.7 2.0 105 22-131 66-180 (198)
35 1a9n_A U2A', U2A'; complex (nu 98.1 1.1E-07 3.8E-12 73.8 -2.5 105 24-135 17-123 (176)
36 1ozn_A Reticulon 4 receptor; N 98.1 6.6E-08 2.3E-12 80.2 -4.4 109 23-135 53-163 (285)
37 1wwl_A Monocyte differentiatio 98.1 6.9E-06 2.4E-10 69.2 8.0 111 24-135 93-211 (312)
38 3v47_A TOLL-like receptor 5B a 98.1 6E-07 2.1E-11 78.7 1.1 22 100-121 212-233 (455)
39 3rfs_A Internalin B, repeat mo 98.1 1.8E-07 6.1E-12 77.6 -2.5 107 23-135 60-167 (272)
40 2z7x_B TOLL-like receptor 1, v 98.1 9.9E-07 3.4E-11 78.8 1.8 159 23-189 321-485 (520)
41 2z81_A CD282 antigen, TOLL-lik 98.1 9.8E-06 3.4E-10 72.6 8.3 66 48-113 332-400 (549)
42 4fcg_A Uncharacterized protein 98.0 1.2E-07 4.1E-12 81.1 -4.4 57 74-134 182-238 (328)
43 1h6u_A Internalin H; cell adhe 98.0 3.5E-06 1.2E-10 71.2 4.4 35 74-111 106-140 (308)
44 4fmz_A Internalin; leucine ric 98.0 4.1E-06 1.4E-10 70.9 4.8 104 22-135 239-343 (347)
45 1m9s_A Internalin B; cell inva 98.0 3.3E-06 1.1E-10 78.7 3.4 101 23-135 62-163 (605)
46 2z66_A Variable lymphocyte rec 98.0 8.5E-08 2.9E-12 80.2 -6.8 62 73-135 148-209 (306)
47 1h6t_A Internalin B; cell adhe 98.0 3.2E-06 1.1E-10 71.0 2.9 101 23-135 65-166 (291)
48 4fcg_A Uncharacterized protein 97.9 4.1E-07 1.4E-11 77.7 -3.0 84 48-135 125-216 (328)
49 2o6q_A Variable lymphocyte rec 97.9 3.4E-07 1.2E-11 75.6 -3.4 109 23-135 58-167 (270)
50 1ozn_A Reticulon 4 receptor; N 97.9 7.9E-07 2.7E-11 73.7 -1.4 85 48-135 151-235 (285)
51 2id5_A Lingo-1, leucine rich r 97.9 2.2E-07 7.5E-12 82.4 -5.3 63 23-87 53-116 (477)
52 2z62_A TOLL-like receptor 4, v 97.9 4.5E-07 1.5E-11 74.8 -3.2 110 23-135 49-159 (276)
53 3v47_A TOLL-like receptor 5B a 97.9 1.3E-06 4.5E-11 76.5 -0.5 134 50-189 275-412 (455)
54 3rw6_A Nuclear RNA export fact 97.9 9.7E-06 3.3E-10 68.5 4.8 89 40-130 160-256 (267)
55 1a9n_A U2A', U2A'; complex (nu 97.9 2.7E-06 9.4E-11 65.8 1.3 111 21-135 37-150 (176)
56 3rfs_A Internalin B, repeat mo 97.9 7E-07 2.4E-11 73.9 -2.4 104 24-135 39-143 (272)
57 3rgz_A Protein brassinosteroid 97.9 3.3E-07 1.1E-11 86.7 -5.1 87 24-111 98-189 (768)
58 3o53_A Protein LRIM1, AGAP0063 97.9 1.4E-06 4.8E-11 73.7 -0.9 78 8-89 16-94 (317)
59 1m9s_A Internalin B; cell inva 97.9 4E-06 1.4E-10 78.1 2.0 81 23-112 84-165 (605)
60 1h6t_A Internalin B; cell adhe 97.9 9.5E-06 3.2E-10 68.1 4.1 79 48-135 66-144 (291)
61 2id5_A Lingo-1, leucine rich r 97.9 4.8E-07 1.6E-11 80.2 -4.1 109 23-135 77-186 (477)
62 1o6v_A Internalin A; bacterial 97.8 9.9E-06 3.4E-10 71.9 4.2 35 74-111 286-320 (466)
63 3t6q_A CD180 antigen; protein- 97.8 3.8E-07 1.3E-11 83.0 -5.8 10 172-181 547-556 (606)
64 2z63_A TOLL-like receptor 4, v 97.8 1.8E-07 6.3E-12 84.0 -7.9 86 49-135 395-480 (570)
65 2z66_A Variable lymphocyte rec 97.8 6.7E-07 2.3E-11 74.7 -4.0 85 48-135 173-258 (306)
66 1h6u_A Internalin H; cell adhe 97.8 1.1E-05 3.8E-10 68.1 3.5 82 23-113 82-164 (308)
67 3oja_A Leucine-rich immune mol 97.8 1.1E-06 3.8E-11 79.2 -3.3 78 8-89 16-94 (487)
68 3t6q_A CD180 antigen; protein- 97.8 3.3E-07 1.1E-11 83.4 -7.0 11 23-33 373-383 (606)
69 1xeu_A Internalin C; cellular 97.7 4.2E-06 1.4E-10 69.4 0.2 56 73-134 126-181 (263)
70 3m19_A Variable lymphocyte rec 97.7 1E-06 3.4E-11 72.0 -3.6 39 73-112 105-143 (251)
71 3vq2_A TLR4, TOLL-like recepto 97.7 3.8E-07 1.3E-11 83.0 -7.1 39 74-112 447-485 (606)
72 3oja_B Anopheles plasmodium-re 97.7 3.4E-06 1.2E-10 77.5 -0.8 111 21-135 70-181 (597)
73 3o6n_A APL1; leucine-rich repe 97.7 1.9E-06 6.4E-11 74.5 -2.5 111 21-135 64-175 (390)
74 3rgz_A Protein brassinosteroid 97.7 1.1E-05 3.7E-10 76.3 2.3 40 23-62 123-163 (768)
75 3vq2_A TLR4, TOLL-like recepto 97.7 5.7E-07 1.9E-11 81.8 -6.5 110 23-135 373-483 (606)
76 2z81_A CD282 antigen, TOLL-lik 97.7 5.6E-05 1.9E-09 67.6 6.6 91 21-113 329-423 (549)
77 2o6s_A Variable lymphocyte rec 97.7 2.3E-06 7.9E-11 67.7 -2.7 109 23-135 49-158 (208)
78 2z63_A TOLL-like receptor 4, v 97.6 8.5E-07 2.9E-11 79.7 -5.9 39 73-112 468-506 (570)
79 2o6q_A Variable lymphocyte rec 97.6 2.6E-06 9E-11 70.2 -2.7 84 49-135 132-215 (270)
80 3a79_B TLR6, VLRB.59, TOLL-lik 97.6 6.8E-06 2.3E-10 74.5 -0.3 108 23-135 350-460 (562)
81 2z62_A TOLL-like receptor 4, v 97.6 3E-06 1E-10 69.8 -2.4 104 22-128 72-179 (276)
82 3j0a_A TOLL-like receptor 5; m 97.6 1.9E-06 6.6E-11 82.3 -4.2 111 23-135 45-158 (844)
83 2v70_A SLIT-2, SLIT homolog 2 97.6 2.6E-06 8.8E-11 68.7 -3.0 110 22-135 53-163 (220)
84 1o6v_A Internalin A; bacterial 97.6 2.2E-05 7.6E-10 69.6 2.7 102 22-135 261-363 (466)
85 1xeu_A Internalin C; cellular 97.6 1.8E-05 6.2E-10 65.5 2.0 102 24-135 39-160 (263)
86 3zyj_A Leucine-rich repeat-con 97.6 1.2E-06 4.3E-11 77.1 -5.5 63 23-87 85-148 (440)
87 2v9t_B SLIT homolog 2 protein 97.6 3.6E-06 1.2E-10 67.8 -2.4 109 23-135 53-162 (220)
88 3zyi_A Leucine-rich repeat-con 97.6 2.5E-06 8.4E-11 75.5 -3.7 39 23-62 120-159 (452)
89 3zyj_A Leucine-rich repeat-con 97.6 2E-06 6.7E-11 75.9 -4.3 39 23-62 109-148 (440)
90 1ogq_A PGIP-2, polygalacturona 97.6 4.2E-07 1.4E-11 77.0 -8.4 88 23-113 73-162 (313)
91 3m19_A Variable lymphocyte rec 97.6 2.7E-06 9.4E-11 69.4 -3.3 85 48-135 105-189 (251)
92 4g8a_A TOLL-like receptor 4; l 97.6 3.1E-06 1.1E-10 76.3 -3.2 110 23-135 73-183 (635)
93 3e6j_A Variable lymphocyte rec 97.6 3.2E-06 1.1E-10 68.5 -2.9 108 23-135 61-169 (229)
94 1dce_A Protein (RAB geranylger 97.6 1.3E-05 4.6E-10 73.9 0.7 100 27-135 442-543 (567)
95 3o53_A Protein LRIM1, AGAP0063 97.5 3.7E-06 1.3E-10 71.0 -3.1 106 23-135 141-247 (317)
96 3oja_A Leucine-rich immune mol 97.5 4.7E-06 1.6E-10 75.1 -2.7 83 49-135 119-201 (487)
97 2z7x_B TOLL-like receptor 1, v 97.5 2.4E-05 8.2E-10 69.8 1.7 66 23-88 345-412 (520)
98 1dce_A Protein (RAB geranylger 97.5 1.5E-05 5E-10 73.6 -0.0 105 21-135 404-518 (567)
99 3zyi_A Leucine-rich repeat-con 97.5 4E-06 1.4E-10 74.2 -3.8 105 26-134 75-180 (452)
100 1p9a_G Platelet glycoprotein I 97.5 3E-06 1E-10 71.2 -4.3 84 48-135 75-158 (290)
101 2z80_A TOLL-like receptor 2, v 97.5 0.00012 4E-09 62.4 5.1 61 74-135 248-311 (353)
102 1ziw_A TOLL-like receptor 3; i 97.4 2.3E-05 7.9E-10 72.2 0.5 106 26-135 25-131 (680)
103 3o6n_A APL1; leucine-rich repe 97.4 1.3E-05 4.4E-10 69.2 -1.1 105 22-135 244-349 (390)
104 4ecn_A Leucine-rich repeat pro 97.4 1.8E-05 6.3E-10 76.7 -0.3 106 24-135 489-605 (876)
105 4eco_A Uncharacterized protein 97.4 1.6E-05 5.3E-10 73.8 -0.8 158 24-192 431-612 (636)
106 3rw6_A Nuclear RNA export fact 97.4 0.00013 4.6E-09 61.5 5.0 88 19-108 163-259 (267)
107 3e6j_A Variable lymphocyte rec 97.4 1.1E-05 3.8E-10 65.2 -1.8 105 26-135 40-145 (229)
108 1xku_A Decorin; proteoglycan, 97.4 2.6E-05 8.9E-10 65.7 0.1 12 23-34 97-108 (330)
109 4eco_A Uncharacterized protein 97.4 4.5E-05 1.6E-09 70.7 1.5 111 22-135 202-340 (636)
110 1xku_A Decorin; proteoglycan, 97.4 1.9E-05 6.6E-10 66.5 -0.9 106 22-135 167-273 (330)
111 1ziw_A TOLL-like receptor 3; i 97.4 7.9E-06 2.7E-10 75.4 -3.7 61 73-134 119-180 (680)
112 2z80_A TOLL-like receptor 2, v 97.4 0.00013 4.4E-09 62.1 4.1 88 23-113 146-235 (353)
113 3oja_B Anopheles plasmodium-re 97.3 1.1E-05 3.8E-10 74.0 -2.8 105 22-135 250-355 (597)
114 2o6s_A Variable lymphocyte rec 97.3 2.6E-05 8.8E-10 61.5 -0.8 89 22-113 72-161 (208)
115 2v9t_B SLIT homolog 2 protein 97.3 9.8E-06 3.3E-10 65.3 -3.6 106 26-135 32-138 (220)
116 2xot_A Amphoterin-induced prot 97.3 1.2E-05 4.2E-10 69.2 -3.2 14 98-111 161-174 (361)
117 1ogq_A PGIP-2, polygalacturona 97.3 3.1E-06 1.1E-10 71.6 -7.0 64 23-88 122-187 (313)
118 3j0a_A TOLL-like receptor 5; m 97.3 1.3E-05 4.6E-10 76.5 -3.5 91 23-114 70-162 (844)
119 4ecn_A Leucine-rich repeat pro 97.2 3.7E-05 1.3E-09 74.6 -0.5 111 22-135 444-583 (876)
120 2o6r_A Variable lymphocyte rec 97.2 2.7E-05 9.3E-10 60.0 -1.3 106 26-135 28-134 (177)
121 1w8a_A SLIT protein; signaling 97.2 1.8E-05 6.2E-10 62.3 -2.4 107 26-135 29-136 (192)
122 4g8a_A TOLL-like receptor 4; l 97.2 2.7E-05 9.4E-10 70.1 -1.6 98 22-121 96-197 (635)
123 2v70_A SLIT-2, SLIT homolog 2 97.2 2.4E-05 8.1E-10 63.0 -1.9 88 22-112 77-165 (220)
124 3bz5_A Internalin-J, INLJ; leu 97.2 7.5E-05 2.6E-09 66.7 1.0 77 25-112 41-118 (457)
125 3bz5_A Internalin-J, INLJ; leu 97.2 0.00019 6.6E-09 64.0 3.6 55 73-135 189-243 (457)
126 3a79_B TLR6, VLRB.59, TOLL-lik 97.2 8.4E-05 2.9E-09 67.3 0.9 89 23-116 73-162 (562)
127 2wfh_A SLIT homolog 2 protein 97.2 2.7E-05 9.1E-10 61.6 -2.1 105 26-135 31-136 (193)
128 2o6r_A Variable lymphocyte rec 97.2 1.9E-05 6.5E-10 60.8 -2.9 88 23-113 49-137 (177)
129 1w8a_A SLIT protein; signaling 97.1 9.5E-06 3.3E-10 63.9 -5.1 89 22-113 50-139 (192)
130 2xot_A Amphoterin-induced prot 97.1 4.3E-05 1.5E-09 65.8 -1.8 109 24-135 62-173 (361)
131 1p9a_G Platelet glycoprotein I 97.0 2.3E-05 7.8E-10 65.8 -3.7 86 47-135 97-182 (290)
132 2wfh_A SLIT homolog 2 protein 97.0 6.6E-05 2.3E-09 59.3 -1.0 88 22-112 50-138 (193)
133 2ft3_A Biglycan; proteoglycan, 97.0 3.9E-05 1.3E-09 64.8 -2.6 101 27-135 173-274 (332)
134 3g39_A Variable lymphocyte rec 96.9 8.8E-05 3E-09 57.3 -0.9 38 73-111 52-89 (170)
135 2r9u_A Variable lymphocyte rec 96.9 9.3E-05 3.2E-09 57.6 -0.9 37 74-111 56-92 (174)
136 4b8c_D Glucose-repressible alc 96.9 2.9E-05 9.8E-10 73.6 -4.8 106 22-135 220-326 (727)
137 3sb4_A Hypothetical leucine ri 96.9 0.00021 7.3E-09 60.4 0.9 34 27-60 26-59 (329)
138 3g06_A SSPH2 (leucine-rich rep 96.7 0.00048 1.6E-08 64.3 2.1 97 49-157 220-317 (622)
139 4b8c_D Glucose-repressible alc 96.7 0.00015 5.3E-09 68.6 -1.8 85 24-114 245-330 (727)
140 2xwt_C Thyrotropin receptor; s 96.6 4.3E-05 1.5E-09 61.5 -5.0 59 48-110 78-140 (239)
141 2ft3_A Biglycan; proteoglycan, 96.6 0.00015 5.1E-09 61.2 -2.0 106 26-135 193-304 (332)
142 3sb4_A Hypothetical leucine ri 96.5 0.00015 5E-09 61.4 -2.7 101 25-134 201-306 (329)
143 3g06_A SSPH2 (leucine-rich rep 96.5 0.0013 4.6E-08 61.3 3.6 85 25-121 220-305 (622)
144 3cvr_A Invasion plasmid antige 96.5 0.00082 2.8E-08 62.2 1.7 84 16-113 48-133 (571)
145 2xwt_C Thyrotropin receptor; s 96.1 0.0004 1.4E-08 55.7 -2.1 106 23-135 77-189 (239)
146 3g39_A Variable lymphocyte rec 96.0 0.00051 1.7E-08 52.9 -1.9 85 26-113 30-115 (170)
147 3cvr_A Invasion plasmid antige 95.9 0.0028 9.7E-08 58.6 2.3 35 73-112 138-172 (571)
148 2r9u_A Variable lymphocyte rec 95.9 0.00063 2.2E-08 52.7 -1.9 85 26-113 33-118 (174)
149 1jl5_A Outer protein YOPM; leu 95.6 0.0057 2E-07 54.4 3.0 74 50-134 173-246 (454)
150 2ifg_A High affinity nerve gro 95.4 0.0016 5.5E-08 55.0 -1.4 86 23-112 28-115 (347)
151 1jl5_A Outer protein YOPM; leu 94.8 0.011 3.7E-07 52.5 2.1 15 73-87 235-249 (454)
152 2ifg_A High affinity nerve gro 94.7 0.007 2.4E-07 51.0 0.7 84 48-135 29-113 (347)
153 4fdw_A Leucine rich hypothetic 92.0 0.012 4.1E-07 51.7 -2.4 79 97-185 268-358 (401)
154 4gt6_A Cell surface protein; l 89.2 0.21 7E-06 42.9 2.9 101 23-134 262-366 (394)
155 4ay9_X Follicle-stimulating ho 88.7 0.023 7.7E-07 48.2 -3.5 84 26-112 30-116 (350)
156 4fdw_A Leucine rich hypothetic 87.0 0.088 3E-06 46.1 -0.9 32 73-108 298-331 (401)
157 4gt6_A Cell surface protein; l 82.8 0.42 1.4E-05 40.9 1.5 34 73-110 332-367 (394)
158 4h09_A Hypothetical leucine ri 81.3 0.2 6.9E-06 42.5 -1.1 101 23-134 237-342 (379)
159 4fs7_A Uncharacterized protein 78.1 0.64 2.2E-05 39.8 1.0 95 23-133 273-374 (394)
160 4ay9_X Follicle-stimulating ho 75.6 0.31 1.1E-05 41.0 -1.6 85 49-135 29-114 (350)
161 4fs7_A Uncharacterized protein 71.0 0.29 1E-05 41.9 -2.9 79 22-110 293-376 (394)
162 3rfe_A Platelet glycoprotein I 69.0 1.5 5.3E-05 32.0 1.1 35 76-111 32-66 (130)
163 4h09_A Hypothetical leucine ri 64.4 2 7E-05 36.1 1.0 129 23-167 214-347 (379)
164 3rfe_A Platelet glycoprotein I 48.2 5.1 0.00017 29.1 0.7 46 50-96 31-77 (130)
165 2lz0_A Uncharacterized protein 40.2 15 0.00052 25.5 2.2 36 72-111 17-54 (100)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.4e-25 Score=201.45 Aligned_cols=172 Identities=49% Similarity=0.828 Sum_probs=151.7
Q ss_pred CCCCCCCCCCcHHHHHHHHhhCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEec
Q 035790 4 HRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIR 83 (198)
Q Consensus 4 ~~~~~~t~~~~D~g~~ai~~~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~ 83 (198)
+....+|+.+.|+|+.+++++|++|++|++++.++|.++..++..+++|++|+|++|..+|.|+..++.+|++|++|+|+
T Consensus 410 ~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp TCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred CCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence 34678899999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCCCC---chhHhHHHHHhHhhhccCCCCCC
Q 035790 84 DSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDE---EETDNYVETLYMYRSLEGPRHDA 160 (198)
Q Consensus 84 ~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~~~---~~~~~~~~~~~~y~sl~g~r~d~ 160 (198)
+|+++|.++..++.++++|++|++++|+++++|++.+++.+|+|+++++.+.+. .+..+.+++++.|++++|||.|+
T Consensus 490 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (594)
T 2p1m_B 490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVAGPRFDM 569 (594)
T ss_dssp SCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSCTTSBCSEEEEEECSSCSCSCC
T ss_pred CCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccccccccchhhhhhhhhccCCCCCCC
Confidence 999999999988889999999999999999999999999999999999987632 22445678999999999999999
Q ss_pred CCcceeecccCCccc
Q 035790 161 PKFVTILRIIKPKLM 175 (198)
Q Consensus 161 p~~v~~l~~~~~~~~ 175 (198)
|++|.+++|..+...
T Consensus 570 p~~~~~l~~~~~~~~ 584 (594)
T 2p1m_B 570 PGFVWNMDQDSTMRF 584 (594)
T ss_dssp CTTEEEC--------
T ss_pred CCceEeccCCCCCcc
Confidence 999999998876543
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=1e-25 Score=205.09 Aligned_cols=164 Identities=33% Similarity=0.588 Sum_probs=148.9
Q ss_pred CCCCCCCCcHHHHHHHHhhCCCCceeEe---cCCCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEe
Q 035790 6 PDHATGEPMDEGFGAIVRNCRKLTRLAV---SGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEI 82 (198)
Q Consensus 6 ~~~~t~~~~D~g~~ai~~~c~~L~~L~L---~g~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L 82 (198)
..++|+.|.|+|+.+++.+|++|++|++ .+.++|.++.+++.++++|++|+|++|..+|.|+..++.+|++|++|+|
T Consensus 416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 495 (592)
T 3ogk_B 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495 (592)
T ss_dssp CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEE
T ss_pred CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeec
Confidence 5689999999999999999999999999 5557999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCCC--------CchhHhHHHHHhHhhhcc
Q 035790 83 RDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDD--------EEETDNYVETLYMYRSLE 154 (198)
Q Consensus 83 ~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~~--------~~~~~~~~~~~~~y~sl~ 154 (198)
++|+|+|.++..++.++++|++|+|++|++|+.|++.+++.+|.|+++++...+ .+.+...++++|.|++++
T Consensus 496 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (592)
T 3ogk_B 496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLA 575 (592)
T ss_dssp ESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC---------------CCCEEEEEECTT
T ss_pred cCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCccccccccccCCcCCcchhheEeeeecC
Confidence 999999999999999999999999999999999999999999999999998641 133334578999999999
Q ss_pred CCCCCCCCcceeecc
Q 035790 155 GPRHDAPKFVTILRI 169 (198)
Q Consensus 155 g~r~d~p~~v~~l~~ 169 (198)
|||.|+|++|++|+|
T Consensus 576 g~~~~~p~~~~~l~~ 590 (592)
T 3ogk_B 576 GQRTDCPTTVRVLKE 590 (592)
T ss_dssp CSCSCCCTTCEECCS
T ss_pred CCccCCCCCeEecCC
Confidence 999999999999975
No 3
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.73 E-value=5.4e-18 Score=136.35 Aligned_cols=105 Identities=13% Similarity=0.225 Sum_probs=93.6
Q ss_pred CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhc---CCCCceEEecCC-CCChHHHHHHHhc
Q 035790 25 CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEG---CPKLQKLEIRDS-PFGDAALRSGLHH 98 (198)
Q Consensus 25 c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~---C~~L~~L~L~~c-~~tD~~l~~i~~~ 98 (198)
..+|++|++++ .|||+++.+|. .|++|+.|+|++|.. ||.|+.+|+.. |++|++|+|++| .|||.|+..++ +
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~ 137 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H 137 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred CceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence 35799999965 47999999996 799999999999987 99999999974 789999999999 69999999875 7
Q ss_pred CCCCcEEEeecee-cCHHH--HHHHHHhCCCCcEEE
Q 035790 99 YYNMRFLWMSSCR-LTRQG--CQEIAQAMPRLVVEV 131 (198)
Q Consensus 99 ~~~L~~L~L~~c~-iTd~g--l~~La~~~p~L~~~~ 131 (198)
|++|++|+|++|. |||.| +..+.+..|+++++.
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL 173 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence 9999999999998 99987 567888999998764
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=1.6e-14 Score=122.51 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=133.0
Q ss_pred CcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccC-CChHHHHHHHhcCCCCceEEecCC-CCCh
Q 035790 13 PMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAG-DSDMGLKYVLEGCPKLQKLEIRDS-PFGD 89 (198)
Q Consensus 13 ~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~-~tD~gl~~i~~~C~~L~~L~L~~c-~~tD 89 (198)
+++.++..++..|++|++|++++ .+++.....++. +++|++|++++|. .++.++..+..+|++|++|++++| .+++
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 45677888999999999999965 469999999985 9999999999995 499999998889999999999999 8999
Q ss_pred HHHHHHHhcCC-CCcEEEeece--ecCHHHHHHHHHhCCCCcEEEecCCC-C-chhHhHHHHHhHhhh--ccCCCCCCCC
Q 035790 90 AALRSGLHHYY-NMRFLWMSSC--RLTRQGCQEIAQAMPRLVVEVIRSDD-E-EETDNYVETLYMYRS--LEGPRHDAPK 162 (198)
Q Consensus 90 ~~l~~i~~~~~-~L~~L~L~~c--~iTd~gl~~La~~~p~L~~~~i~~~~-~-~~~~~~~~~~~~y~s--l~g~r~d~p~ 162 (198)
.++..+..+++ +|++|++++| .+++.++..+...+|+|+...+..+. . ......+.++...+. +++-....|.
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 99888889999 9999999999 59999999998899999998888763 1 122223334433333 3444444455
Q ss_pred cceeecccCCcccccccccCCCh
Q 035790 163 FVTILRIIKPKLMLVQIKFAEPS 185 (198)
Q Consensus 163 ~v~~l~~~~~~~~~l~~~~~~~~ 185 (198)
.+..+ ..+.+|..|+++..-|.
T Consensus 264 ~~~~l-~~~~~L~~L~l~~~i~~ 285 (336)
T 2ast_B 264 TLLEL-GEIPTLKTLQVFGIVPD 285 (336)
T ss_dssp GGGGG-GGCTTCCEEECTTSSCT
T ss_pred HHHHH-hcCCCCCEEeccCccCH
Confidence 44334 23778888888766443
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=8.5e-14 Score=126.41 Aligned_cols=125 Identities=22% Similarity=0.350 Sum_probs=102.9
Q ss_pred CCCcHHHHHHHHhhCCCCceeEe-cCCCCHHHHHHHHhcCCCCcEEEeec---cCC-Ch----HHHHHHHhcCCCCceEE
Q 035790 11 GEPMDEGFGAIVRNCRKLTRLAV-SGLLTDRAFGYIGKYGKLIRTLSVAF---AGD-SD----MGLKYVLEGCPKLQKLE 81 (198)
Q Consensus 11 ~~~~D~g~~ai~~~c~~L~~L~L-~g~lTD~~L~~I~~~~~~L~~L~L~~---c~~-tD----~gl~~i~~~C~~L~~L~ 81 (198)
..+++.|+.+++.+|++|++|.+ ...+++.++..|+..+++|+.|++.. |.. ++ +|+..+..+|++|++|+
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 46889999999999999999999 33569999999998899999999974 333 43 68888888888888888
Q ss_pred ecCCC--CChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 82 IRDSP--FGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 82 L~~c~--~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
+++|. ++|.++..++..+++|++|+|++|.+++.++..++..+++|+...+..+
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 88773 8888888888888888888888888888888888888888888777766
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=7.6e-14 Score=126.56 Aligned_cols=124 Identities=16% Similarity=0.197 Sum_probs=83.7
Q ss_pred CCCcHHHHHHHHhhCCCCceeEec-CCCCHHHHHHHHhcCCCCcEEEee-----ccCC-C----hHHHHHHHhcCCCCce
Q 035790 11 GEPMDEGFGAIVRNCRKLTRLAVS-GLLTDRAFGYIGKYGKLIRTLSVA-----FAGD-S----DMGLKYVLEGCPKLQK 79 (198)
Q Consensus 11 ~~~~D~g~~ai~~~c~~L~~L~L~-g~lTD~~L~~I~~~~~~L~~L~L~-----~c~~-t----D~gl~~i~~~C~~L~~ 79 (198)
..+++.++.+++.+|++|++|.+. ..+++.++..++..+++|+.|+++ +|.. + |.|+..+..+|++|++
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE
Confidence 356778888888778888888662 345788888787777888888887 3444 5 6777777666777666
Q ss_pred EEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 80 LEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 80 L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++++ .++|.++..++..+++|++|+|++|.+++.|+..++..+|+|+...+..+
T Consensus 437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp EECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred EeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence 66655 56666666665556666666666666666666666656666665555544
No 7
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.50 E-value=2.8e-14 Score=114.61 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=77.3
Q ss_pred CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC-CCChHHHHHHHhc---CCCCcEEEeecee-cCHHHHHHHHHh
Q 035790 49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS-PFGDAALRSGLHH---YYNMRFLWMSSCR-LTRQGCQEIAQA 123 (198)
Q Consensus 49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c-~~tD~~l~~i~~~---~~~L~~L~L~~c~-iTd~gl~~La~~ 123 (198)
..+|++|++++|..+|.|+.++ .+|++|++|+|++| .|||.|+..++.. +++|++|+|++|. |||+|+..|+ .
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~ 137 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H 137 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence 3479999999999999999998 58999999999999 6999999998763 6799999999998 9999999998 6
Q ss_pred CCCCcEEEecCC
Q 035790 124 MPRLVVEVIRSD 135 (198)
Q Consensus 124 ~p~L~~~~i~~~ 135 (198)
+|+|+...+..+
T Consensus 138 ~~~L~~L~L~~c 149 (176)
T 3e4g_A 138 FRNLKYLFLSDL 149 (176)
T ss_dssp CTTCCEEEEESC
T ss_pred CCCCCEEECCCC
Confidence 999998888876
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=1e-12 Score=111.31 Aligned_cols=157 Identities=13% Similarity=0.070 Sum_probs=121.1
Q ss_pred hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC-CCChHHHHHHHhcCCC
Q 035790 24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS-PFGDAALRSGLHHYYN 101 (198)
Q Consensus 24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c-~~tD~~l~~i~~~~~~ 101 (198)
.+++|++|++++ .+++.++..+...+++|++|++.+|..++.....++. |++|++|++++| .+++.++..+..++++
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 468999999965 4588888888889999999999999889988888765 999999999999 7999999998899999
Q ss_pred CcEEEeece-ecCHHHHHHHHHhCC-CCcEEEecCCC--Cchh--HhHHHHHhHhhh--ccCCCCCCCCcceeecccCCc
Q 035790 102 MRFLWMSSC-RLTRQGCQEIAQAMP-RLVVEVIRSDD--EEET--DNYVETLYMYRS--LEGPRHDAPKFVTILRIIKPK 173 (198)
Q Consensus 102 L~~L~L~~c-~iTd~gl~~La~~~p-~L~~~~i~~~~--~~~~--~~~~~~~~~y~s--l~g~r~d~p~~v~~l~~~~~~ 173 (198)
|++|++++| .+++.++..+...+| +|+...+..+. ..+. ...+.++...+. +++-+......+..+ ..+.+
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~ 248 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNY 248 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTT
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCC
Confidence 999999999 699999999889999 99999888762 1111 112344434444 344432111222223 34589
Q ss_pred ccccccccC
Q 035790 174 LMLVQIKFA 182 (198)
Q Consensus 174 ~~~l~~~~~ 182 (198)
|+.|++++.
T Consensus 249 L~~L~l~~~ 257 (336)
T 2ast_B 249 LQHLSLSRC 257 (336)
T ss_dssp CCEEECTTC
T ss_pred CCEeeCCCC
Confidence 999999986
No 9
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.42 E-value=7.5e-12 Score=99.61 Aligned_cols=122 Identities=13% Similarity=0.069 Sum_probs=103.3
Q ss_pred cHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHh---cCCCCcEEEeeccCCChHHHHHHHh---cCCCCceEEecCC
Q 035790 14 MDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGK---YGKLIRTLSVAFAGDSDMGLKYVLE---GCPKLQKLEIRDS 85 (198)
Q Consensus 14 ~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~---~~~~L~~L~L~~c~~tD~gl~~i~~---~C~~L~~L~L~~c 85 (198)
.++.+..++..+++|++|+|++ .++|+++..|++ .+++|++|+|++|..+|+|+..+++ .++.|++|+|++|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4577888889999999999954 579999988876 4689999999999999999887764 4689999999999
Q ss_pred CCChHHHHHHH---hcCCCCcEEEe--eceecCHHHHHHHHHh---CCCCcEEEecCC
Q 035790 86 PFGDAALRSGL---HHYYNMRFLWM--SSCRLTRQGCQEIAQA---MPRLVVEVIRSD 135 (198)
Q Consensus 86 ~~tD~~l~~i~---~~~~~L~~L~L--~~c~iTd~gl~~La~~---~p~L~~~~i~~~ 135 (198)
.|+|+|+..++ .+.++|++|+| ++|.++++|...++.. .+.|+...+..+
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 99999987775 56779999999 8889999998877754 578888887765
No 10
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=4e-12 Score=111.83 Aligned_cols=124 Identities=14% Similarity=0.126 Sum_probs=91.3
Q ss_pred CCcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHHh----cCCCCcEEEeeccCCChHHHHHHH---hcCCCCceEEec
Q 035790 12 EPMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGK----YGKLIRTLSVAFAGDSDMGLKYVL---EGCPKLQKLEIR 83 (198)
Q Consensus 12 ~~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~----~~~~L~~L~L~~c~~tD~gl~~i~---~~C~~L~~L~L~ 83 (198)
.++++|+..++..+++|++|+|++ .++|.++..++. .+++|++|+|++|..++.|+..++ ..+++|++|+|+
T Consensus 112 ~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls 191 (372)
T 3un9_A 112 QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191 (372)
T ss_dssp CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECT
T ss_pred CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCC
Confidence 456777777777777888888854 457877777764 357788888888877777776664 457788888888
Q ss_pred CCCCChHHHHHHH---hcCCCCcEEEeeceecCHHHHHHHHH---hCCCCcEEEecCC
Q 035790 84 DSPFGDAALRSGL---HHYYNMRFLWMSSCRLTRQGCQEIAQ---AMPRLVVEVIRSD 135 (198)
Q Consensus 84 ~c~~tD~~l~~i~---~~~~~L~~L~L~~c~iTd~gl~~La~---~~p~L~~~~i~~~ 135 (198)
+|.|+|.|+..++ .++++|++|+|++|.+++.|+..++. .+|.|+...+..+
T Consensus 192 ~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 8888887765543 45678888888888888888777765 3577877777765
No 11
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=1.2e-11 Score=108.79 Aligned_cols=123 Identities=11% Similarity=0.055 Sum_probs=85.0
Q ss_pred CcHHHHHHHHhh----CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHh----cCCCCceEEec
Q 035790 13 PMDEGFGAIVRN----CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLE----GCPKLQKLEIR 83 (198)
Q Consensus 13 ~~D~g~~ai~~~----c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~----~C~~L~~L~L~ 83 (198)
+++.+...++.. +++|++|+|++ .+++.++..++..+++|+.|+|++|..+|.|+..++. .+++|++|+|+
T Consensus 84 l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls 163 (372)
T 3un9_A 84 MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS 163 (372)
T ss_dssp CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECC
T ss_pred CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCC
Confidence 455555554433 35788888854 4577777777777777888888887777777776653 35678888888
Q ss_pred CCCCChHHHHHHH---hcCCCCcEEEeeceecCHHHHHHHHHh---CCCCcEEEecCC
Q 035790 84 DSPFGDAALRSGL---HHYYNMRFLWMSSCRLTRQGCQEIAQA---MPRLVVEVIRSD 135 (198)
Q Consensus 84 ~c~~tD~~l~~i~---~~~~~L~~L~L~~c~iTd~gl~~La~~---~p~L~~~~i~~~ 135 (198)
+|.+++.++..++ ..+++|++|+|++|.+++.|+..|+.. .+.|+...+..+
T Consensus 164 ~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 164 NNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp SSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred CCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 8888777766553 567778888888888888777766643 456766666665
No 12
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.29 E-value=5e-11 Score=94.83 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=89.6
Q ss_pred CCcHHHHHHHHh---hCCCCceeEecC-CCCHHHHHHHHhc---CCCCcEEEeeccCCChHHHHHHHhc---CCCCceEE
Q 035790 12 EPMDEGFGAIVR---NCRKLTRLAVSG-LLTDRAFGYIGKY---GKLIRTLSVAFAGDSDMGLKYVLEG---CPKLQKLE 81 (198)
Q Consensus 12 ~~~D~g~~ai~~---~c~~L~~L~L~g-~lTD~~L~~I~~~---~~~L~~L~L~~c~~tD~gl~~i~~~---C~~L~~L~ 81 (198)
.+.|+|+..++. .+++|++|+|++ .++|++..+|++. .++|++|+|++|..+|.|+.++++. ++.|++|+
T Consensus 48 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~ 127 (185)
T 1io0_A 48 NIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELR 127 (185)
T ss_dssp TCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEE
T ss_pred CCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEE
Confidence 678999887765 478999999965 5699998888764 5799999999999999999888754 67899999
Q ss_pred e--cCCCCChHHHHHH---HhcCCCCcEEEeeceecCHHH
Q 035790 82 I--RDSPFGDAALRSG---LHHYYNMRFLWMSSCRLTRQG 116 (198)
Q Consensus 82 L--~~c~~tD~~l~~i---~~~~~~L~~L~L~~c~iTd~g 116 (198)
| ++|.|+|+|...+ ....++|++|+|++|.+++.|
T Consensus 128 L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 128 IDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 9 8889999996655 456789999999999999887
No 13
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.28 E-value=1.7e-11 Score=107.98 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=103.8
Q ss_pred CCcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHHh---cCCCCcEEEeeccCCChHHHHHHHhcCC----CCceEEec
Q 035790 12 EPMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGK---YGKLIRTLSVAFAGDSDMGLKYVLEGCP----KLQKLEIR 83 (198)
Q Consensus 12 ~~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~---~~~~L~~L~L~~c~~tD~gl~~i~~~C~----~L~~L~L~ 83 (198)
++++.++..++..+++|++|++++ .+++.++..|+. .+++|++|+|+++..++.++..+++.++ +|++|+++
T Consensus 14 ~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~ 93 (461)
T 1z7x_W 14 ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 93 (461)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECT
T ss_pred ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEcc
Confidence 467888999889999999999954 458876655543 5799999999999889999999998888 79999999
Q ss_pred CCCCChHHHHHH---HhcCCCCcEEEeeceecCHHHHHHHHHh----CCCCcEEEecCC
Q 035790 84 DSPFGDAALRSG---LHHYYNMRFLWMSSCRLTRQGCQEIAQA----MPRLVVEVIRSD 135 (198)
Q Consensus 84 ~c~~tD~~l~~i---~~~~~~L~~L~L~~c~iTd~gl~~La~~----~p~L~~~~i~~~ 135 (198)
+|.+++.++..+ ..++++|++|++++|.+++.+...++.. .+.|+...+..+
T Consensus 94 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 94 NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp TSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 999998764443 5789999999999999999999988875 346888888766
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=6.1e-11 Score=103.00 Aligned_cols=96 Identities=21% Similarity=0.350 Sum_probs=42.2
Q ss_pred CCCceeEecC-CCCHHHHHHHHh---cCCCCcEEEeeccCCChHHHHHHHh----cCCCCceEEecCCCCChHHHHHH--
Q 035790 26 RKLTRLAVSG-LLTDRAFGYIGK---YGKLIRTLSVAFAGDSDMGLKYVLE----GCPKLQKLEIRDSPFGDAALRSG-- 95 (198)
Q Consensus 26 ~~L~~L~L~g-~lTD~~L~~I~~---~~~~L~~L~L~~c~~tD~gl~~i~~----~C~~L~~L~L~~c~~tD~~l~~i-- 95 (198)
++|++|++++ .+++.++..++. .+++|++|++++|..++.|+..++. ++++|+.|+|++|.+++.|...+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 4455555532 234444433222 3445555555544444444433333 34445555554444444433322
Q ss_pred -HhcCCCCcEEEeeceecCHHHHHHHH
Q 035790 96 -LHHYYNMRFLWMSSCRLTRQGCQEIA 121 (198)
Q Consensus 96 -~~~~~~L~~L~L~~c~iTd~gl~~La 121 (198)
..++++|++|+|++|.+++.|...++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHH
Confidence 23444444455544444444444443
No 15
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=7.1e-11 Score=102.59 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=91.9
Q ss_pred HHHHHhhCCCCceeEecC-CCCHHHHHHHHhcC------------CCCcEEEeeccCCChHHHHHHH---hcCCCCceEE
Q 035790 18 FGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYG------------KLIRTLSVAFAGDSDMGLKYVL---EGCPKLQKLE 81 (198)
Q Consensus 18 ~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~------------~~L~~L~L~~c~~tD~gl~~i~---~~C~~L~~L~ 81 (198)
+...+..+++|++|+|++ .+++.+...++... ++|++|++++|..++.++..++ ..+++|++|+
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 193 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence 333456789999999955 45777777666533 8999999999888877777544 3789999999
Q ss_pred ecCCCCChHHHHHHH----hcCCCCcEEEeeceecCHHHHHHHH---HhCCCCcEEEecCC
Q 035790 82 IRDSPFGDAALRSGL----HHYYNMRFLWMSSCRLTRQGCQEIA---QAMPRLVVEVIRSD 135 (198)
Q Consensus 82 L~~c~~tD~~l~~i~----~~~~~L~~L~L~~c~iTd~gl~~La---~~~p~L~~~~i~~~ 135 (198)
+++|.+++.++..++ .++++|++|+|++|.+++.|...+. ..+|.|+...+..+
T Consensus 194 L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 999999998866654 4888999999999999988877776 45688888888766
No 16
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.19 E-value=9.9e-11 Score=103.01 Aligned_cols=114 Identities=17% Similarity=0.298 Sum_probs=75.1
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHh----cCCCCcEEEeeccCCChHHHHHHH---hcCCCCceEEecCCCCChHHHH
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGK----YGKLIRTLSVAFAGDSDMGLKYVL---EGCPKLQKLEIRDSPFGDAALR 93 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~----~~~~L~~L~L~~c~~tD~gl~~i~---~~C~~L~~L~L~~c~~tD~~l~ 93 (198)
+..+++|++|++++ .+++.++..+++ ..++|++|++++|..++.++..+. ..+++|++|++++|.+++.++.
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 34567777777744 346666666654 244777777777766665543333 3577777777777777777765
Q ss_pred HHHh----cCCCCcEEEeeceecCHHHHHHHHH---hCCCCcEEEecCC
Q 035790 94 SGLH----HYYNMRFLWMSSCRLTRQGCQEIAQ---AMPRLVVEVIRSD 135 (198)
Q Consensus 94 ~i~~----~~~~L~~L~L~~c~iTd~gl~~La~---~~p~L~~~~i~~~ 135 (198)
.++. .+++|++|++++|.+++.|+..+.. .++.|+...+..+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 5543 4677777888777777777655554 3677777776655
No 17
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.07 E-value=1.3e-09 Score=88.84 Aligned_cols=121 Identities=15% Similarity=0.104 Sum_probs=98.0
Q ss_pred cHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHhc---CCCCcEEEeeccCCChHHHHHHHh---cCCCCceEEecCC
Q 035790 14 MDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKY---GKLIRTLSVAFAGDSDMGLKYVLE---GCPKLQKLEIRDS 85 (198)
Q Consensus 14 ~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~~---~~~L~~L~L~~c~~tD~gl~~i~~---~C~~L~~L~L~~c 85 (198)
.++.+..+....+.|++|+|+. .++|++...|++. ...|++|+|++|..+|.|..+|++ .-+.|++|+|++|
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 4477888888899999999964 6799998888764 569999999999999999888774 4578999999999
Q ss_pred CCChHHHHHHHh---cCCCCcEEEeece---ecCHHHHHHHHHh---CCCCcEEEecC
Q 035790 86 PFGDAALRSGLH---HYYNMRFLWMSSC---RLTRQGCQEIAQA---MPRLVVEVIRS 134 (198)
Q Consensus 86 ~~tD~~l~~i~~---~~~~L~~L~L~~c---~iTd~gl~~La~~---~p~L~~~~i~~ 134 (198)
.|+|+|...++. .-+.|++|+|+++ .+.++|..+|+.. -+.|....+..
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 999999888764 4467999999865 5799987777654 46676555543
No 18
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=4.9e-10 Score=98.57 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=67.6
Q ss_pred CcHHHHHHHHh-hCCCCceeEecC----CCCHHHHHHHH-----hcCCCCcEEEeeccCCChHHHHHHHh--cCCCCceE
Q 035790 13 PMDEGFGAIVR-NCRKLTRLAVSG----LLTDRAFGYIG-----KYGKLIRTLSVAFAGDSDMGLKYVLE--GCPKLQKL 80 (198)
Q Consensus 13 ~~D~g~~ai~~-~c~~L~~L~L~g----~lTD~~L~~I~-----~~~~~L~~L~L~~c~~tD~gl~~i~~--~C~~L~~L 80 (198)
++++++..++. .+|+|++|.|+. ...|.++..|+ ..+|+|+.|+|..|..+|.+...++. .+++|++|
T Consensus 205 l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~L 284 (362)
T 2ra8_A 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284 (362)
T ss_dssp CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEE
T ss_pred CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEE
Confidence 45666666654 467777776621 11222121111 23567777777776666666555554 35677777
Q ss_pred EecCCCCChHHHHHHH---hcCCCCcEEEeeceecCHHHHHHHHHhC
Q 035790 81 EIRDSPFGDAALRSGL---HHYYNMRFLWMSSCRLTRQGCQEIAQAM 124 (198)
Q Consensus 81 ~L~~c~~tD~~l~~i~---~~~~~L~~L~L~~c~iTd~gl~~La~~~ 124 (198)
+|+.|.++|.|...++ .++++|++|+|+.|.++++++++|++.+
T Consensus 285 dLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp ECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred ECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 7776677777665554 3466777777777777777777777654
No 19
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.97 E-value=5.5e-10 Score=96.52 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=52.9
Q ss_pred hhCC-CCceeEecC-CCCHHHHHHHHhc----CCCCcEEEeeccCCChHHHHHH---HhcC-CCCceEEecCCCCChHHH
Q 035790 23 RNCR-KLTRLAVSG-LLTDRAFGYIGKY----GKLIRTLSVAFAGDSDMGLKYV---LEGC-PKLQKLEIRDSPFGDAAL 92 (198)
Q Consensus 23 ~~c~-~L~~L~L~g-~lTD~~L~~I~~~----~~~L~~L~L~~c~~tD~gl~~i---~~~C-~~L~~L~L~~c~~tD~~l 92 (198)
..++ +|++|+|++ .+++.+...++.. +++|++|+|++|..++.+...+ ...+ ++|++|++++|.+++.+.
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 3455 566666643 2344333333321 2566666666655433332222 2233 556666666655554443
Q ss_pred HHHH---hc-CCCCcEEEeeceecCHHHHHHHHHh---CC-CCcEEEecCC
Q 035790 93 RSGL---HH-YYNMRFLWMSSCRLTRQGCQEIAQA---MP-RLVVEVIRSD 135 (198)
Q Consensus 93 ~~i~---~~-~~~L~~L~L~~c~iTd~gl~~La~~---~p-~L~~~~i~~~ 135 (198)
..++ .. +++|++|+|++|.+++.|...++.. .+ .|+...+..+
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 3322 22 3456666666655555444444322 22 5555554443
No 20
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=4.8e-09 Score=92.20 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=82.5
Q ss_pred HHHHHHhhCCCCceeEecC----------------------CCCHHHHHHHHh-cCCCCcEEEeeccC---CChHHH---
Q 035790 17 GFGAIVRNCRKLTRLAVSG----------------------LLTDRAFGYIGK-YGKLIRTLSVAFAG---DSDMGL--- 67 (198)
Q Consensus 17 g~~ai~~~c~~L~~L~L~g----------------------~lTD~~L~~I~~-~~~~L~~L~L~~c~---~tD~gl--- 67 (198)
++..++..+|+|++|.|++ .++++++..|+. .+|+|+.|+|+.+. ..+.++
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 3556666777777776622 247888888875 57889988886432 123223
Q ss_pred HHHH--hcCCCCceEEecCCCCChHHHHHHHh--cCCCCcEEEeeceecCHHHHHHHHH---hCCCCcEEEecCC
Q 035790 68 KYVL--EGCPKLQKLEIRDSPFGDAALRSGLH--HYYNMRFLWMSSCRLTRQGCQEIAQ---AMPRLVVEVIRSD 135 (198)
Q Consensus 68 ~~i~--~~C~~L~~L~L~~c~~tD~~l~~i~~--~~~~L~~L~L~~c~iTd~gl~~La~---~~p~L~~~~i~~~ 135 (198)
..+. ..+|+|+.|++++|.++|.+...++. .+++|++|+|+.|.+++.|.+.++. .+|+|+...+..+
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 2222 34788999999888888877665553 5788999999888899998888874 3688887777654
No 21
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.73 E-value=3.9e-08 Score=84.82 Aligned_cols=102 Identities=10% Similarity=0.123 Sum_probs=66.3
Q ss_pred CCceeEecC-CCCHHHHHHHHh---cC-CCCcEEEeeccCCChHHHHHHHh----cCCCCceEEecCCCCChHHH---HH
Q 035790 27 KLTRLAVSG-LLTDRAFGYIGK---YG-KLIRTLSVAFAGDSDMGLKYVLE----GCPKLQKLEIRDSPFGDAAL---RS 94 (198)
Q Consensus 27 ~L~~L~L~g-~lTD~~L~~I~~---~~-~~L~~L~L~~c~~tD~gl~~i~~----~C~~L~~L~L~~c~~tD~~l---~~ 94 (198)
+|++|+|++ .+++.+...++. .+ ++|++|+|++|..++.|+..++. .+++|++|+|++|.+++.+. ..
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 777777743 234444333332 34 47788888777766655554432 24678888888887777443 33
Q ss_pred HHhcCCCCcEEEeecee---cCHHHHHHHHHhCCCCc
Q 035790 95 GLHHYYNMRFLWMSSCR---LTRQGCQEIAQAMPRLV 128 (198)
Q Consensus 95 i~~~~~~L~~L~L~~c~---iTd~gl~~La~~~p~L~ 128 (198)
+...+++|++|++++|. ++++++..+....+.+.
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~ 284 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence 34667788888888887 78888888887777665
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.70 E-value=1.2e-08 Score=76.96 Aligned_cols=83 Identities=19% Similarity=0.128 Sum_probs=35.2
Q ss_pred cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCC
Q 035790 48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL 127 (198)
Q Consensus 48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L 127 (198)
.+++|++|++++|..++. ....++++|+.|++++|.+++. +.....++++|++|++++|++++-........+|+|
T Consensus 40 ~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp TCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred hcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 345555555555444222 1123345555555555544432 122233455555555555554442211112244555
Q ss_pred cEEEecC
Q 035790 128 VVEVIRS 134 (198)
Q Consensus 128 ~~~~i~~ 134 (198)
+...+..
T Consensus 116 ~~L~l~~ 122 (149)
T 2je0_A 116 KSLDLFN 122 (149)
T ss_dssp CEEECTT
T ss_pred CEEeCcC
Confidence 4444443
No 23
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.67 E-value=7.4e-08 Score=78.35 Aligned_cols=121 Identities=12% Similarity=0.116 Sum_probs=80.7
Q ss_pred cHHHHHHHHhhCCCCceeEecCCCC--HHHHHHHHhcCCCCcEEEeecc-CCChHHHHHHHhc---CCCCceEEecCCCC
Q 035790 14 MDEGFGAIVRNCRKLTRLAVSGLLT--DRAFGYIGKYGKLIRTLSVAFA-GDSDMGLKYVLEG---CPKLQKLEIRDSPF 87 (198)
Q Consensus 14 ~D~g~~ai~~~c~~L~~L~L~g~lT--D~~L~~I~~~~~~L~~L~L~~c-~~tD~gl~~i~~~---C~~L~~L~L~~c~~ 87 (198)
..+||..+++.-+--.+.+-...-| ++.+..+-...+.|++|+|+.+ ...|+|+..|++. -..|++|+|++|.|
T Consensus 3 ~~~~~~~~~k~~~~~~~~~e~~N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i 82 (197)
T 1pgv_A 3 HGTTFNGIMQSYVPRIVPDEPDNDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI 82 (197)
T ss_dssp ------------------------CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred CCccccceecccccccCCCCCCCCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC
Confidence 3456777766433222222222113 5678888888899999999986 5699999888765 46799999999999
Q ss_pred ChHHHHHHH---hcCCCCcEEEeeceecCHHHHHHHHHhCC---CCcEEEecC
Q 035790 88 GDAALRSGL---HHYYNMRFLWMSSCRLTRQGCQEIAQAMP---RLVVEVIRS 134 (198)
Q Consensus 88 tD~~l~~i~---~~~~~L~~L~L~~c~iTd~gl~~La~~~p---~L~~~~i~~ 134 (198)
+|.|..+++ ..-+.|++|+|++|.|+++|..+|++.+. .|....+..
T Consensus 83 gd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 83 SDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp BHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred ChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 999976654 56688999999999999999999998763 566666653
No 24
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.64 E-value=8.3e-09 Score=81.73 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=66.6
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
+..+++|++|++++ .+++ +..++ .+++|++|++++|..++.+...+ .++++|+.|++++|.+++.....+ .+++
T Consensus 62 l~~l~~L~~L~l~~n~~~~--~~~l~-~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~ 136 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATN--YNPIS-GLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKI-NTLP 136 (197)
T ss_dssp GGGCTTCSEEEEESCCCSC--CGGGT-TCTTCCEEEEECTTCBGGGSCCC-TTCTTCCEEECCSSBCBGGGHHHH-TTCS
T ss_pred HhcCCCCCEEEccCCCCCc--chhhh-cCCCCCEEEeECCccCcccChhh-cCCCCCCEEEecCCccCcHhHHHH-hhCC
Confidence 35677788888844 2222 22344 46777777777776665555444 347777777777777777555443 4677
Q ss_pred CCcEEEeecee-cCHHHHHHHHHhCCCCcEEEecCC
Q 035790 101 NMRFLWMSSCR-LTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 101 ~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
+|++|++++|+ +++-. . ...+|+|+...+..+
T Consensus 137 ~L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFD 169 (197)
T ss_dssp SCCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTB
T ss_pred CCCEEEccCCCCccccH--h-hcCCCCCCEEECCCC
Confidence 77777777776 65532 2 345677776666654
No 25
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.57 E-value=1.2e-08 Score=76.90 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=79.3
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
...+++|++|++++ .+++. ..++ .+++|++|++++|..++. +..+..++++|+.|++++|.+++-.......+++
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~--~~~~-~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~ 113 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI--ANLP-KLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE 113 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC--TTCC-CCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT
T ss_pred HhhcCCCcEEECcCCCCCCc--hhhh-cCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC
Confidence 45789999999955 34544 4343 689999999999988542 4455567999999999999998864434467899
Q ss_pred CCcEEEeeceecCHHHH--HHHHHhCCCCcEEEe
Q 035790 101 NMRFLWMSSCRLTRQGC--QEIAQAMPRLVVEVI 132 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~gl--~~La~~~p~L~~~~i 132 (198)
+|++|++++|+++...- ......+|+|+...+
T Consensus 114 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 114 NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 99999999999765432 234557888876543
No 26
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.54 E-value=3.3e-09 Score=81.65 Aligned_cols=106 Identities=17% Similarity=0.090 Sum_probs=66.9
Q ss_pred CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCc
Q 035790 25 CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMR 103 (198)
Q Consensus 25 c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~ 103 (198)
.++|++|++++ .+++..+......+++|++|++++|..++. ....++++|+.|++++|.+++. +.....++++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCC
Confidence 36788888844 234333333334567888888888776433 2234578888888888876653 333445678888
Q ss_pred EEEeeceecCHH-HHHHHHHhCCCCcEEEecCC
Q 035790 104 FLWMSSCRLTRQ-GCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 104 ~L~L~~c~iTd~-gl~~La~~~p~L~~~~i~~~ 135 (198)
+|++++|.+++- .+..+ ..+|+|+...+..+
T Consensus 99 ~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N 130 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPL-KKLECLKSLDLFNC 130 (168)
T ss_dssp EEECBSSSCCSSGGGGGG-SSCSCCCEEECCSS
T ss_pred EEeccCCccCcchhHHHH-hcCCCCCEEEeeCC
Confidence 888888886653 22233 35777777777654
No 27
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.50 E-value=1.8e-08 Score=77.45 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=80.7
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
+..+++|++|++++ .+++. ..++ .+++|++|++++|..++. +..+..++++|+.|++++|.+++-.......+++
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~--~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV--SNLP-KLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC--SSCC-CCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred HHhCCCCCEEeCcCCCCCCh--hhhc-cCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence 46789999999954 34544 4344 689999999999988542 4455567999999999999988743213356899
Q ss_pred CCcEEEeeceecCHHHH--HHHHHhCCCCcEEEecCC
Q 035790 101 NMRFLWMSSCRLTRQGC--QEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~gl--~~La~~~p~L~~~~i~~~ 135 (198)
+|++|++++|+++.... ......+|+|+...+..+
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999999999655432 234557899987766654
No 28
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.48 E-value=2.4e-08 Score=79.00 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=96.9
Q ss_pred hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790 24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM 102 (198)
Q Consensus 24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L 102 (198)
.+++|++|++++ .+++ +..+. .+++|++|++++|..++-. .+ .++++|++|++++|.+++..... ...+++|
T Consensus 42 ~l~~L~~L~l~~n~i~~--l~~l~-~l~~L~~L~l~~n~~~~~~--~l-~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD--LTGIE-YAHNIKDLTINNIHATNYN--PI-SGLSNLERLRIMGKDVTSDKIPN-LSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEESSCCSC--CTTGG-GCTTCSEEEEESCCCSCCG--GG-TTCTTCCEEEEECTTCBGGGSCC-CTTCTTC
T ss_pred hcCCccEEeccCCCccC--hHHHh-cCCCCCEEEccCCCCCcch--hh-hcCCCCCEEEeECCccCcccChh-hcCCCCC
Confidence 457899999955 3353 12343 6899999999999664432 33 56999999999999998866555 4579999
Q ss_pred cEEEeeceecCHHHHHHHHHhCCCCcEEEecCCC-CchhHhHHHHHhHhhhccCCCCCCCCcceeecccCCccccccccc
Q 035790 103 RFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDD-EEETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKPKLMLVQIKF 181 (198)
Q Consensus 103 ~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~~-~~~~~~~~~~~~~y~sl~g~r~d~p~~v~~l~~~~~~~~~l~~~~ 181 (198)
++|++++|.+++.....+. .+++|+...+..+. ...- ..+..+...+.|.--....-. ++. ...+.+|+.|+++.
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~~~-l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-YRG-IEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-CTT-GGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-hHH-hccCCCCCEEEeeC
Confidence 9999999999887777665 68999998888763 2111 123333222222111111111 111 23457788888876
Q ss_pred CC
Q 035790 182 AE 183 (198)
Q Consensus 182 ~~ 183 (198)
-.
T Consensus 191 N~ 192 (197)
T 4ezg_A 191 QT 192 (197)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 29
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.41 E-value=8.5e-09 Score=81.76 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=74.2
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
+..+++|++|++++ .+++ +..+. .+++|++|++++|..++ +..+...+++|+.|++++|.+++- .. ..+++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~--l~~~~-~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l--~~-~~~l~ 115 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK--ISSLS-GMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASL--SG-IEKLV 115 (198)
T ss_dssp HHHTTTCSEEECSEEEESC--CCCHH-HHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCH--HH-HHHHH
T ss_pred HhcCCCCCEEECCCCCCcc--ccccc-cCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcC--Cc-cccCC
Confidence 45688999999954 2233 22344 47899999999887642 223334567899999999988763 33 45788
Q ss_pred CCcEEEeeceecCHHH-HHHHHHhCCCCcEEEecCC
Q 035790 101 NMRFLWMSSCRLTRQG-CQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~g-l~~La~~~p~L~~~~i~~~ 135 (198)
+|++|++++|++++-+ +..+. .+++|+...+..+
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~-~l~~L~~L~l~~N 150 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLA-ALDKLEDLLLAGN 150 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHT-TTTTCSEEEECSC
T ss_pred CCCEEECCCCcCCchhHHHHHh-cCCCCCEEEecCC
Confidence 9999999999977643 34444 6899998888775
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.36 E-value=6.5e-07 Score=75.84 Aligned_cols=145 Identities=12% Similarity=0.108 Sum_probs=70.7
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|+.|++++ .+++... + ..+++|++|++++|..++... ...+++|++|++++|.+++- . ....+++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~-~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~ 266 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITP--V-ANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDI--N-AVKDLTK 266 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--G-GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC--G-GGTTCTT
T ss_pred cCCCccceeecccCCCCCCch--h-hcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCC--h-hHhcCCC
Confidence 4566777777633 2232211 2 246667777776666532221 34566666666666665542 1 2345666
Q ss_pred CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCCCC-chhHhHHHHHhHhhhccCCCCCCCCcceeecccCCcccccccc
Q 035790 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDE-EETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKPKLMLVQIK 180 (198)
Q Consensus 102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~~~-~~~~~~~~~~~~y~sl~g~r~d~p~~v~~l~~~~~~~~~l~~~ 180 (198)
|++|++++|++++- .. ...+++|+...+..+.. ....+.+..+...+.|.--....-. +++ ...+++|..|+++
T Consensus 267 L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 267 LKMLNVGSNQISDI--SV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP-LASLSKMDSADFA 341 (347)
T ss_dssp CCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC-CGG-GGGCTTCSEESSS
T ss_pred cCEEEccCCccCCC--hh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc-ccC-hhhhhccceeehh
Confidence 66666666664442 11 23566666666655421 1222223333333222111111111 111 3356788888877
Q ss_pred c
Q 035790 181 F 181 (198)
Q Consensus 181 ~ 181 (198)
+
T Consensus 342 ~ 342 (347)
T 4fmz_A 342 N 342 (347)
T ss_dssp C
T ss_pred h
Confidence 6
No 31
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.34 E-value=6e-08 Score=81.82 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=68.6
Q ss_pred hhCCCCceeEecC-CCCH----HHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCC-hHHHHHH-
Q 035790 23 RNCRKLTRLAVSG-LLTD----RAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFG-DAALRSG- 95 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD----~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~t-D~~l~~i- 95 (198)
..+++|++|++++ .+++ .....+. .+++|++|+|++|..+...... ..++++|++|++++|.++ +.++...
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 191 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQ-VRAFPALTSLDLSDNPGLGERGLMAAL 191 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTS-CCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHH-hccCCCCCEEECCCCCCccchhhhHHH
Confidence 4577888888844 2343 1223334 5788888888887763222122 245788888888888754 3343221
Q ss_pred -HhcCCCCcEEEeeceecC--HHHHHHHHHhCCCCcEEEecCC
Q 035790 96 -LHHYYNMRFLWMSSCRLT--RQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 96 -~~~~~~L~~L~L~~c~iT--d~gl~~La~~~p~L~~~~i~~~ 135 (198)
..++++|++|+|++|+++ ......+...++.|+...+..+
T Consensus 192 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred hhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 246788888888888865 3333445556788877777655
No 32
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.32 E-value=7.1e-07 Score=75.15 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=80.0
Q ss_pred CcHHHHHHHHh--hCCCCceeEecC-CCCHHHHHHHH-hcCCCCcEEEeeccCCCh----HHHHHHHhcCCCCceEEecC
Q 035790 13 PMDEGFGAIVR--NCRKLTRLAVSG-LLTDRAFGYIG-KYGKLIRTLSVAFAGDSD----MGLKYVLEGCPKLQKLEIRD 84 (198)
Q Consensus 13 ~~D~g~~ai~~--~c~~L~~L~L~g-~lTD~~L~~I~-~~~~~L~~L~L~~c~~tD----~gl~~i~~~C~~L~~L~L~~ 84 (198)
.++.++..+.+ .+++|++|++++ .++...-..+. ...++|++|+|+++..++ .....+. .+++|++|++++
T Consensus 76 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~ 154 (310)
T 4glp_A 76 VPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQ 154 (310)
T ss_dssp CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEEC
T ss_pred CCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeC
Confidence 45666666554 357899999954 22333222231 468899999999988743 2223344 799999999999
Q ss_pred CCCChHHHHHHHhcCCCCcEEEeeceecC-HHHHHHHH--HhCCCCcEEEecCC
Q 035790 85 SPFGDAALRSGLHHYYNMRFLWMSSCRLT-RQGCQEIA--QAMPRLVVEVIRSD 135 (198)
Q Consensus 85 c~~tD~~l~~i~~~~~~L~~L~L~~c~iT-d~gl~~La--~~~p~L~~~~i~~~ 135 (198)
|.++...-. ...++++|++|+|++|+++ +.++..-. ..+|+|+...+..+
T Consensus 155 n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 155 AHSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp CSSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred CCcchhhHH-HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence 987543322 2357899999999999954 44443222 46788887777765
No 33
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.32 E-value=1.9e-07 Score=78.91 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=72.8
Q ss_pred hhCCCCceeEecC-CCCH--HHHHHHHhc-CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChH-HHHHHH-
Q 035790 23 RNCRKLTRLAVSG-LLTD--RAFGYIGKY-GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDA-ALRSGL- 96 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD--~~L~~I~~~-~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~-~l~~i~- 96 (198)
..+++|++|++++ .+++ ..+..+... .++|++|+++++..+......+ .++++|++|++++|.++.. ++....
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 5678899999954 2343 234444321 3789999998887643222222 4688899999988876543 332222
Q ss_pred -hcCCCCcEEEeeceecCH--HHHHHHHHhCCCCcEEEecCC
Q 035790 97 -HHYYNMRFLWMSSCRLTR--QGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 97 -~~~~~L~~L~L~~c~iTd--~gl~~La~~~p~L~~~~i~~~ 135 (198)
.++++|++|++++|+++. .-...+...+++|+...+..+
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 678889999999888763 233455557788888877765
No 34
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.14 E-value=6.6e-07 Score=70.71 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=74.6
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
+..+++|+.|++++ .+++ +..+...+++|++|++++|..++ +..+ .++++|+.|++++|.+++-........++
T Consensus 66 ~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~--l~~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~ 140 (198)
T 1ds9_A 66 LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--LSGI-EKLVNLRVLYMSNNKITNWGEIDKLAALD 140 (198)
T ss_dssp HHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCC--HHHH-HHHHHSSEEEESEEECCCHHHHHHHTTTT
T ss_pred cccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCc--CCcc-ccCCCCCEEECCCCcCCchhHHHHHhcCC
Confidence 35679999999954 2231 22233346899999999998854 3344 45889999999999998754323456899
Q ss_pred CCcEEEeeceecCHH---------HHHHHHHhCCCCcEEE
Q 035790 101 NMRFLWMSSCRLTRQ---------GCQEIAQAMPRLVVEV 131 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~---------gl~~La~~~p~L~~~~ 131 (198)
+|++|++++|.++.. -...+...+|+|+...
T Consensus 141 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 141 KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999999986543 1233456789998654
No 35
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.13 E-value=1.1e-07 Score=73.82 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=68.9
Q ss_pred hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790 24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM 102 (198)
Q Consensus 24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L 102 (198)
.+++|++|++++ .+++ +..+....++|++|+++++..++- .. ..++++|+.|++++|.+++-. ..+...+++|
T Consensus 17 ~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DG-FPLLRRLKTLLVNNNRICRIG-EGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CC-CCCCSSCCEEECCSSCCCEEC-SCHHHHCTTC
T ss_pred CcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--cc-cccCCCCCEEECCCCcccccC-cchhhcCCCC
Confidence 477888888854 3342 244555556888888888877542 22 346788888888888776421 1123568888
Q ss_pred cEEEeeceecCHHH-HHHHHHhCCCCcEEEecCC
Q 035790 103 RFLWMSSCRLTRQG-CQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 103 ~~L~L~~c~iTd~g-l~~La~~~p~L~~~~i~~~ 135 (198)
++|++++|++++-. +..+ ..+|+|+...+..+
T Consensus 91 ~~L~L~~N~i~~~~~~~~l-~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPL-ASLKSLTYLCILRN 123 (176)
T ss_dssp CEEECCSCCCCCGGGGGGG-GGCTTCCEEECCSS
T ss_pred CEEECCCCcCCcchhhHhh-hcCCCCCEEEecCC
Confidence 88888888865422 2233 36788887777765
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.12 E-value=6.6e-08 Score=80.23 Aligned_cols=109 Identities=14% Similarity=0.185 Sum_probs=52.1
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccC-CChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAG-DSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~-~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
..+++|++|++++ .+++..-..++ .+++|++|+++++. .++.....+ .++++|++|++++|.+++..- ....+++
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~ 129 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFT-GLALLEQLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRCGLQELGP-GLFRGLA 129 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSCTTCCCCCTTTT-TTCTTCCEEECTTSCCCCCCT-TTTTTCT
T ss_pred ccCCCCCEEECCCCccceeCHhhcC-CccCCCEEeCCCCCCccccCHHHh-cCCcCCCEEECCCCcCCEECH-hHhhCCc
Confidence 4566677776643 22332222232 45667777776664 222211112 346666666666665543221 1124566
Q ss_pred CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
+|++|++++|+++......+ ..+++|+...+..+
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGN 163 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred CCCEEECCCCcccccCHhHh-ccCCCccEEECCCC
Confidence 66666666665432211111 23555555555443
No 37
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.11 E-value=6.9e-06 Score=69.19 Aligned_cols=111 Identities=16% Similarity=0.116 Sum_probs=64.8
Q ss_pred hCCCCceeEecC-CCCHHHHHHH-HhcCCCCcEEEeeccCCChH--HHHHHHhc-CCCCceEEecCCCCChHHHHHHHhc
Q 035790 24 NCRKLTRLAVSG-LLTDRAFGYI-GKYGKLIRTLSVAFAGDSDM--GLKYVLEG-CPKLQKLEIRDSPFGDAALRSGLHH 98 (198)
Q Consensus 24 ~c~~L~~L~L~g-~lTD~~L~~I-~~~~~~L~~L~L~~c~~tD~--gl~~i~~~-C~~L~~L~L~~c~~tD~~l~~i~~~ 98 (198)
.+++|++|++++ .+++..-..+ ...+++|++|+|+++..++. .+..+... +++|++|++++|.++...-.. ..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-VRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-CCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-hcc
Confidence 577888888843 2233222222 13577888888888776332 23333221 378888888888765433222 346
Q ss_pred CCCCcEEEeeceecCHH-HH-HHHH-HhCCCCcEEEecCC
Q 035790 99 YYNMRFLWMSSCRLTRQ-GC-QEIA-QAMPRLVVEVIRSD 135 (198)
Q Consensus 99 ~~~L~~L~L~~c~iTd~-gl-~~La-~~~p~L~~~~i~~~ 135 (198)
+++|++|++++|+++.. ++ ..+. ..+++|+...+..+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 78888888888875432 32 2221 45677777777665
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.09 E-value=6e-07 Score=78.68 Aligned_cols=22 Identities=9% Similarity=0.015 Sum_probs=10.8
Q ss_pred CCCcEEEeeceecCHHHHHHHH
Q 035790 100 YNMRFLWMSSCRLTRQGCQEIA 121 (198)
Q Consensus 100 ~~L~~L~L~~c~iTd~gl~~La 121 (198)
++|++|++++|+++......+.
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~ 233 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFF 233 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHH
T ss_pred ceeeeEecCCCcccccchhhhh
Confidence 4455555555555544444443
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.08 E-value=1.8e-07 Score=77.58 Aligned_cols=107 Identities=12% Similarity=0.106 Sum_probs=53.4
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|++|++++ .+++ +..++ .+++|++|++++|..++..-. +..++++|++|++++|.++...- ....++++
T Consensus 60 ~~l~~L~~L~l~~n~l~~--~~~l~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~ 134 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHD--ISALK-ELTNLTYLILTGNQLQSLPNG-VFDKLTNLKELVLVENQLQSLPD-GVFDKLTN 134 (272)
T ss_dssp GGCTTCCEEECTTSCCCC--CGGGT-TCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCT-TTTTTCTT
T ss_pred ccCCCCcEEECCCCCCCC--chhhc-CCCCCCEEECCCCccCccChh-HhcCCcCCCEEECCCCcCCccCH-HHhccCCC
Confidence 4566777777743 2233 12333 466777777766655321111 12346666777776665543211 11245666
Q ss_pred CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++|++++|.++.-.-. ....+++|+...+..+
T Consensus 135 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKG-VFDKLTNLTELDLSYN 167 (272)
T ss_dssp CCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred CCEEECCCCccCccCHH-HhccCccCCEEECCCC
Confidence 66666666664421111 1124566665555544
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.06 E-value=9.9e-07 Score=78.85 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=90.9
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChH-HHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDM-GLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~-gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
..+++|++|++++ .+++.....++ .+++|++|++++|..++- .+.....++++|+.|++++|.+++..-......++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 4678888888854 34554444443 578888888888887542 33344467888888888888776521111234677
Q ss_pred CCcEEEeeceecCHHHHHHHHHhC-CCCcEEEecCCCCchhHhHHHHHhHhhh--ccCCC-CCCCCcceeecccCCcccc
Q 035790 101 NMRFLWMSSCRLTRQGCQEIAQAM-PRLVVEVIRSDDEEETDNYVETLYMYRS--LEGPR-HDAPKFVTILRIIKPKLML 176 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~gl~~La~~~-p~L~~~~i~~~~~~~~~~~~~~~~~y~s--l~g~r-~d~p~~v~~l~~~~~~~~~ 176 (198)
+|++|++++|+++.... ... +.|+...+..+..+.-...+..+...+. |++-+ ...|.. ....+.+|..
T Consensus 400 ~L~~L~Ls~N~l~~~~~----~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~ 472 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIF----RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG---IFDRLTSLQK 472 (520)
T ss_dssp TCCEEECCSSCCCGGGG----GSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCCE
T ss_pred cCCEEECcCCCCCcchh----hhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH---HhccCCcccE
Confidence 88888888888764322 222 5777777766521101111112222222 22211 122322 2345678888
Q ss_pred cccccCCChhhhh
Q 035790 177 VQIKFAEPSDVCQ 189 (198)
Q Consensus 177 l~~~~~~~~~~~~ 189 (198)
|+++.-.=...|.
T Consensus 473 L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 473 IWLHTNPWDCSCP 485 (520)
T ss_dssp EECCSSCBCCCHH
T ss_pred EECcCCCCcccCC
Confidence 8888766555563
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.06 E-value=9.8e-06 Score=72.60 Aligned_cols=66 Identities=18% Similarity=0.042 Sum_probs=34.8
Q ss_pred cCCCCcEEEeeccCCChHHHHHH--HhcCCCCceEEecCCCCChHHH-HHHHhcCCCCcEEEeeceecC
Q 035790 48 YGKLIRTLSVAFAGDSDMGLKYV--LEGCPKLQKLEIRDSPFGDAAL-RSGLHHYYNMRFLWMSSCRLT 113 (198)
Q Consensus 48 ~~~~L~~L~L~~c~~tD~gl~~i--~~~C~~L~~L~L~~c~~tD~~l-~~i~~~~~~L~~L~L~~c~iT 113 (198)
.+++|++|++++|..++...... ...+++|+.|++++|.+++-.- .....++++|++|++++|+++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 45666666666665554333221 2345666666666665554321 123455666666666666544
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.04 E-value=1.2e-07 Score=81.12 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=25.3
Q ss_pred CCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecC
Q 035790 74 CPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRS 134 (198)
Q Consensus 74 C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~ 134 (198)
+++|++|++++|.++ .+.....++++|++|+|++|.++. +..-...+++|+...+..
T Consensus 182 l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp STTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTT
T ss_pred CCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcC
Confidence 444555555544433 111113445556666665555331 111123455555555554
No 43
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.02 E-value=3.5e-06 Score=71.21 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=14.6
Q ss_pred CCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790 74 CPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 74 C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~ 111 (198)
+++|++|++++|.+++-. . ...+++|++|++++|.
T Consensus 106 l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQ 140 (308)
T ss_dssp CTTCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCCCCch--h-hcCCCCCCEEECCCCc
Confidence 444444444444433311 1 2344444444444444
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.02 E-value=4.1e-06 Score=70.88 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=78.9
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
...+++|++|++++ .+++- ..+ ..+++|+.|++++|..++. . ....+++|++|++++|.+++..... ..+++
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~ 311 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAV-KDLTKLKMLNVGSNQISDI--S-VLNNLSQLNSLFLNNNQLGNEDMEV-IGGLT 311 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGG-TTCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCGGGHHH-HHTCT
T ss_pred hhcCCCCCEEECCCCccCCC--hhH-hcCCCcCEEEccCCccCCC--h-hhcCCCCCCEEECcCCcCCCcChhH-hhccc
Confidence 56899999999955 33442 333 3689999999999987543 2 3467999999999999998877655 45799
Q ss_pred CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
+|++|++++|++++..- ...+|.|+...+..+
T Consensus 312 ~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP---LASLSKMDSADFANQ 343 (347)
T ss_dssp TCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC
T ss_pred cCCEEEccCCccccccC---hhhhhccceeehhhh
Confidence 99999999999665322 347889987777654
No 45
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.96 E-value=3.3e-06 Score=78.68 Aligned_cols=101 Identities=20% Similarity=0.224 Sum_probs=54.2
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|+.|+|++ .+++.. .++ .+++|+.|+|++|..++ +.. ...+++|+.|+|++|.+++- .. ..++++
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~~--~l~-~l~~L~~L~Ls~N~l~~--l~~-l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~~ 132 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDIK--PLT-NLKNLGWLFLDENKIKD--LSS-LKDLKKLKSLSLEHNGISDI--NG-LVHLPQ 132 (605)
T ss_dssp GGCTTCCEEECTTSCCCCCG--GGG-GCTTCCEEECCSSCCCC--CTT-STTCTTCCEEECTTSCCCCC--GG-GGGCTT
T ss_pred ccCCCCCEEEeeCCCCCCCh--hhc-cCCCCCEEECcCCCCCC--Chh-hccCCCCCEEEecCCCCCCC--cc-ccCCCc
Confidence 4567777777743 223211 133 56677777777665532 112 23466667777766665542 11 345666
Q ss_pred CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|+.|+|++|++++- .. ...+++|+.+.+..+
T Consensus 133 L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 133 LESLYLGNNKITDI--TV-LSRLTKLDTLSLEDN 163 (605)
T ss_dssp CSEEECCSSCCCCC--GG-GGSCTTCSEEECCSS
T ss_pred cCEEECCCCccCCc--hh-hcccCCCCEEECcCC
Confidence 66666666664442 12 234566666555544
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.95 E-value=8.5e-08 Score=80.22 Aligned_cols=62 Identities=21% Similarity=0.357 Sum_probs=27.7
Q ss_pred cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
++++|++|++++|.+++..+.....++++|++|++++|.++......+ ..+++|+...+..+
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N 209 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHN 209 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTS
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh-cCCCCCCEEECCCC
Confidence 345555555555544432222223445555666665555433211112 23455555555443
No 47
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.95 E-value=3.2e-06 Score=70.98 Aligned_cols=101 Identities=21% Similarity=0.250 Sum_probs=50.3
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|++|++++ .+++.. .+ ..+++|++|+++++..++ +.. ..++++|+.|++++|.+++- . ...++++
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~--~l-~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~i~~~--~-~l~~l~~ 135 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIK--PL-ANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGISDI--N-GLVHLPQ 135 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCG--GG-TTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCCC--G-GGGGCTT
T ss_pred hcCCCCCEEEccCCccCCCc--cc-ccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCcCCCC--h-hhcCCCC
Confidence 4566777777743 223211 12 245666666666665532 112 23466666666666655442 1 1345556
Q ss_pred CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++|++++|.+++- .. ...+++|+...+..+
T Consensus 136 L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 136 LESLYLGNNKITDI--TV-LSRLTKLDTLSLEDN 166 (291)
T ss_dssp CCEEECCSSCCCCC--GG-GGGCTTCSEEECCSS
T ss_pred CCEEEccCCcCCcc--hh-hccCCCCCEEEccCC
Confidence 66666666654432 11 224555555555443
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.93 E-value=4.1e-07 Score=77.74 Aligned_cols=84 Identities=17% Similarity=0.085 Sum_probs=40.2
Q ss_pred cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHH--------HhcCCCCcEEEeeceecCHHHHHH
Q 035790 48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSG--------LHHYYNMRFLWMSSCRLTRQGCQE 119 (198)
Q Consensus 48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i--------~~~~~~L~~L~L~~c~iTd~gl~~ 119 (198)
.+++|++|+|++|..+ .+..-..++++|+.|++++|.+...--..+ ..++++|++|++++|.++ .+..
T Consensus 125 ~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~ 200 (328)
T 4fcg_A 125 QFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPA 200 (328)
T ss_dssp GGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCG
T ss_pred ccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchH
Confidence 3455555555555442 111112345566666666553211100000 123666777777776654 1211
Q ss_pred HHHhCCCCcEEEecCC
Q 035790 120 IAQAMPRLVVEVIRSD 135 (198)
Q Consensus 120 La~~~p~L~~~~i~~~ 135 (198)
-...+++|+...+..+
T Consensus 201 ~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNS 216 (328)
T ss_dssp GGGGCTTCCEEEEESS
T ss_pred hhcCCCCCCEEEccCC
Confidence 1345677777766655
No 49
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.93 E-value=3.4e-07 Score=75.63 Aligned_cols=109 Identities=16% Similarity=0.088 Sum_probs=59.4
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
.++++|++|++++ .++.-. ..+...+++|++|+++++..+..... +..++++|++|++++|.++...-. ...++++
T Consensus 58 ~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 134 (270)
T 2o6q_A 58 HRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQALPIG-VFDQLVNLAELRLDRNQLKSLPPR-VFDSLTK 134 (270)
T ss_dssp SSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSCCCCCCTT-TTTTCSSCCEEECCSSCCCCCCTT-TTTTCTT
T ss_pred cCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCcCCcCCHh-HcccccCCCEEECCCCccCeeCHH-HhCcCcC
Confidence 4567777777743 222111 11223467777777777665321111 224577777777777765543211 1346777
Q ss_pred CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++|+|++|.++.-.-..+ ..+++|+...+..+
T Consensus 135 L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 135 LTYLSLGYNELQSLPKGVF-DKLTSLKELRLYNN 167 (270)
T ss_dssp CCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccCHhHc-cCCcccceeEecCC
Confidence 7777777777543221112 24677776666554
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.92 E-value=7.9e-07 Score=73.65 Aligned_cols=85 Identities=9% Similarity=0.073 Sum_probs=50.5
Q ss_pred cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCC
Q 035790 48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL 127 (198)
Q Consensus 48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L 127 (198)
.+++|+.|+++++..++..... ..++++|++|++++|.+++..... ..++++|++|++++|.++......+ ..+++|
T Consensus 151 ~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L 227 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEAL-APLRAL 227 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHH-TTCTTC
T ss_pred cCCCccEEECCCCcccccCHHH-hcCccccCEEECCCCcccccCHhH-ccCcccccEeeCCCCcCCcCCHHHc-ccCccc
Confidence 3566666666666543211111 234677777777777665543222 3567788888888887654333333 367888
Q ss_pred cEEEecCC
Q 035790 128 VVEVIRSD 135 (198)
Q Consensus 128 ~~~~i~~~ 135 (198)
+...+..+
T Consensus 228 ~~L~l~~N 235 (285)
T 1ozn_A 228 QYLRLNDN 235 (285)
T ss_dssp CEEECCSS
T ss_pred CEEeccCC
Confidence 87777665
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.91 E-value=2.2e-07 Score=82.40 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=28.1
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPF 87 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~ 87 (198)
..+++|++|+|++ .+++..-..++ .+++|++|+|+++..+..... +..++++|++|+|++|.+
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLIPLG-VFTGLSNLTKLDISENKI 116 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCTT-SSTTCTTCCEEECTTSCC
T ss_pred cCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCcCCccCcc-cccCCCCCCEEECCCCcc
Confidence 4566666666643 22322112222 355666666655544211111 112355555555555544
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.91 E-value=4.5e-07 Score=74.81 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=59.9
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|++|++++ .++...-..++ .+++|++|+++++..+......+ .++++|++|++++|.++.-.-.. ..++++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~ 125 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFP-IGHLKT 125 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTSCCCCSTTCC-CTTCTT
T ss_pred ccccCCcEEECCCCcCCccCHHHcc-CCcCCCEEECCCCccCccChhhh-cCCccccEEECCCCCccccCchh-cccCCC
Confidence 4567777777743 22322111222 46777777777766533222222 35677777777777554322111 346777
Q ss_pred CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++|++++|.++...+......+++|+...+..+
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 7777777777554222222335677776666654
No 53
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.90 E-value=1.3e-06 Score=76.49 Aligned_cols=134 Identities=11% Similarity=0.046 Sum_probs=69.2
Q ss_pred CCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcE
Q 035790 50 KLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVV 129 (198)
Q Consensus 50 ~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~ 129 (198)
++|+.|+++++..++..-. ...++++|++|++++|.+++..-.. ..++++|++|+|++|.++......+ ..++.|+.
T Consensus 275 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~ 351 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEINKIDDNA-FWGLTHLLKLNLSQNFLGSIDSRMF-ENLDKLEV 351 (455)
T ss_dssp SCCCEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGG-TTCTTCCE
T ss_pred cCceEEEecCccccccchh-hcccCCCCCEEECCCCcccccChhH-hcCcccCCEEECCCCccCCcChhHh-cCcccCCE
Confidence 4666666666655332111 2245778888888877766543222 3467778888888877543322222 35677777
Q ss_pred EEecCCCC-chhHhHHHHHhHhhhc--cCCC-CCCCCcceeecccCCcccccccccCCChhhhh
Q 035790 130 EVIRSDDE-EETDNYVETLYMYRSL--EGPR-HDAPKFVTILRIIKPKLMLVQIKFAEPSDVCQ 189 (198)
Q Consensus 130 ~~i~~~~~-~~~~~~~~~~~~y~sl--~g~r-~d~p~~v~~l~~~~~~~~~l~~~~~~~~~~~~ 189 (198)
..+..+.. ......+..+...+.| ++-+ ...|.. ....+.+|+.|++++-.=++.|.
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCCcccccChhhccccccccEEECCCCccccCCHh---HhccCCcccEEEccCCCcccCCC
Confidence 77765521 1111222333222222 2211 112211 12345678888887765555554
No 54
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.89 E-value=9.7e-06 Score=68.54 Aligned_cols=89 Identities=13% Similarity=0.232 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCCCcEEEeeccCCCh-HHHHHHHhcCCCCceEEecCCCCChH-HHHHHHhcCCCCcEEEeeceecCH---
Q 035790 40 RAFGYIGKYGKLIRTLSVAFAGDSD-MGLKYVLEGCPKLQKLEIRDSPFGDA-ALRSGLHHYYNMRFLWMSSCRLTR--- 114 (198)
Q Consensus 40 ~~L~~I~~~~~~L~~L~L~~c~~tD-~gl~~i~~~C~~L~~L~L~~c~~tD~-~l~~i~~~~~~L~~L~L~~c~iTd--- 114 (198)
..+..+.+.+++|++|+|+++..++ .++..+...+++|+.|+|++|.|++- .+.. ...+ +|++|+|++|.++.
T Consensus 160 ~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 160 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTTGGGCS
T ss_pred HHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcCccccC
Confidence 3455566778999999999998833 45555667899999999999988765 2332 2233 89999999999763
Q ss_pred ---HHHHHHHHhCCCCcEE
Q 035790 115 ---QGCQEIAQAMPRLVVE 130 (198)
Q Consensus 115 ---~gl~~La~~~p~L~~~ 130 (198)
.-...+...+|+|+.+
T Consensus 238 ~~~~y~~~il~~~P~L~~L 256 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRL 256 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEE
T ss_pred cchhHHHHHHHHCcccCeE
Confidence 2234567789998754
No 55
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.89 E-value=2.7e-06 Score=65.84 Aligned_cols=111 Identities=12% Similarity=0.099 Sum_probs=77.0
Q ss_pred HHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcC
Q 035790 21 IVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHY 99 (198)
Q Consensus 21 i~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~ 99 (198)
+....++|+.|++++ .+++- ..++ .+++|++|+++++..++-. ..+..++++|+.|++++|.+++-.-.....++
T Consensus 37 ~~~~~~~L~~L~Ls~N~l~~~--~~l~-~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l 112 (176)
T 1a9n_A 37 LGATLDQFDAIDFSDNEIRKL--DGFP-LLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSLVELGDLDPLASL 112 (176)
T ss_dssp GGGGTTCCSEEECCSSCCCEE--CCCC-CCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGC
T ss_pred hhhcCCCCCEEECCCCCCCcc--cccc-cCCCCCEEECCCCcccccC-cchhhcCCCCCEEECCCCcCCcchhhHhhhcC
Confidence 344456999999965 34542 3444 5899999999999874321 12235699999999999988763311134689
Q ss_pred CCCcEEEeeceecCHH--HHHHHHHhCCCCcEEEecCC
Q 035790 100 YNMRFLWMSSCRLTRQ--GCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 100 ~~L~~L~L~~c~iTd~--gl~~La~~~p~L~~~~i~~~ 135 (198)
++|++|++++|+++.. ....+...+|+|+.......
T Consensus 113 ~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 113 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 9999999999996532 22234568999987766654
No 56
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.88 E-value=7e-07 Score=73.92 Aligned_cols=104 Identities=12% Similarity=0.084 Sum_probs=73.4
Q ss_pred hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790 24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM 102 (198)
Q Consensus 24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L 102 (198)
.+++|++|.+++ .+++ +..++ .+++|++|+++++..++ +.. ..++++|++|++++|.+++-.- ....++++|
T Consensus 39 ~l~~L~~L~l~~~~i~~--~~~l~-~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS--VQGIQ-YLPNVRYLALGGNKLHD--ISA-LKELTNLTYLILTGNQLQSLPN-GVFDKLTNL 111 (272)
T ss_dssp HHTTCCEEECTTSCCCC--CTTGG-GCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred cccceeeeeeCCCCccc--ccccc-cCCCCcEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCccCh-hHhcCCcCC
Confidence 467899999954 2232 22344 68999999999998754 223 3579999999999998774321 223678999
Q ss_pred cEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 103 RFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 103 ~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
++|++++|+++...-.. ...+++|+...+..+
T Consensus 112 ~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGV-FDKLTNLTYLNLAHN 143 (272)
T ss_dssp CEEECTTSCCCCCCTTT-TTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHH-hccCCCCCEEECCCC
Confidence 99999999966322111 236788988888765
No 57
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.87 E-value=3.3e-07 Score=86.75 Aligned_cols=87 Identities=16% Similarity=0.054 Sum_probs=36.5
Q ss_pred hCCCCceeEecC-CCCHHHHH--HHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHH--HHhc
Q 035790 24 NCRKLTRLAVSG-LLTDRAFG--YIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRS--GLHH 98 (198)
Q Consensus 24 ~c~~L~~L~L~g-~lTD~~L~--~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~--i~~~ 98 (198)
.+++|++|+|++ .++...-. .++ .+++|++|+|++|..+......+..++++|++|++++|.+++..... ...+
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGG-GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHh-CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 455666666643 11221111 333 35566666665554321111111134555555555555443322111 1234
Q ss_pred CCCCcEEEeecee
Q 035790 99 YYNMRFLWMSSCR 111 (198)
Q Consensus 99 ~~~L~~L~L~~c~ 111 (198)
+++|++|++++|.
T Consensus 177 l~~L~~L~Ls~n~ 189 (768)
T 3rgz_A 177 CGELKHLAISGNK 189 (768)
T ss_dssp CTTCCEEECCSSE
T ss_pred CCCCCEEECCCCc
Confidence 4444444444444
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.86 E-value=1.4e-06 Score=73.66 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=55.6
Q ss_pred CCCCCCcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCC
Q 035790 8 HATGEPMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSP 86 (198)
Q Consensus 8 ~~t~~~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~ 86 (198)
.+++.-..+.+..+.+.+++|++|+|++ .+++.....++ .+++|++|+|++|..++.. . ..++++|++|++++|.
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY 91 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc
Confidence 3555566677778888899999999955 34554444454 6899999999998773211 1 3568889999998886
Q ss_pred CCh
Q 035790 87 FGD 89 (198)
Q Consensus 87 ~tD 89 (198)
+++
T Consensus 92 l~~ 94 (317)
T 3o53_A 92 VQE 94 (317)
T ss_dssp EEE
T ss_pred ccc
Confidence 653
No 59
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.86 E-value=4e-06 Score=78.11 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=38.1
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|++|+|++ .+++ +..++ .+++|+.|+|++|..++ +.. ...+++|+.|+|++|.+++- .....+++
T Consensus 84 ~~l~~L~~L~Ls~N~l~~--l~~l~-~l~~L~~L~Ls~N~l~~--l~~-l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~ 154 (605)
T 1m9s_A 84 TNLKNLGWLFLDENKIKD--LSSLK-DLKKLKSLSLEHNGISD--ING-LVHLPQLESLYLGNNKITDI---TVLSRLTK 154 (605)
T ss_dssp GGCTTCCEEECCSSCCCC--CTTST-TCTTCCEEECTTSCCCC--CGG-GGGCTTCSEEECCSSCCCCC---GGGGSCTT
T ss_pred ccCCCCCEEECcCCCCCC--Chhhc-cCCCCCEEEecCCCCCC--Ccc-ccCCCccCEEECCCCccCCc---hhhcccCC
Confidence 4566666666633 2222 11222 35556666665555422 111 23355555555555554442 12334555
Q ss_pred CcEEEeeceec
Q 035790 102 MRFLWMSSCRL 112 (198)
Q Consensus 102 L~~L~L~~c~i 112 (198)
|+.|+|++|.+
T Consensus 155 L~~L~Ls~N~l 165 (605)
T 1m9s_A 155 LDTLSLEDNQI 165 (605)
T ss_dssp CSEEECCSSCC
T ss_pred CCEEECcCCcC
Confidence 55555555553
No 60
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.85 E-value=9.5e-06 Score=68.06 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=38.9
Q ss_pred cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCC
Q 035790 48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL 127 (198)
Q Consensus 48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L 127 (198)
.+++|++|++++|..++.. . ..++++|+.|++++|.+++- .. ..++++|++|++++|++++- ..+ ..+++|
T Consensus 66 ~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~i~~~--~~l-~~l~~L 136 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHNGISDI--NGL-VHLPQL 136 (291)
T ss_dssp GCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTSCCCCC--GGG-GGCTTC
T ss_pred cCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCCcCCCC--hhh-cCCCCC
Confidence 3556666666655542211 1 23456666666666655441 11 34556666666666654331 112 245555
Q ss_pred cEEEecCC
Q 035790 128 VVEVIRSD 135 (198)
Q Consensus 128 ~~~~i~~~ 135 (198)
+...+..+
T Consensus 137 ~~L~l~~n 144 (291)
T 1h6t_A 137 ESLYLGNN 144 (291)
T ss_dssp CEEECCSS
T ss_pred CEEEccCC
Confidence 55555543
No 61
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.85 E-value=4.8e-07 Score=80.20 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=66.2
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
.++++|++|+|++ .++.-.-..+ ..+++|++|+|+++..+...-.. ..++++|++|++++|.++...-.. ..++++
T Consensus 77 ~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~ 153 (477)
T 2id5_A 77 NNLFNLRTLGLRSNRLKLIPLGVF-TGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRA-FSGLNS 153 (477)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTSS-TTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEECTTS-STTCTT
T ss_pred hCCccCCEEECCCCcCCccCcccc-cCCCCCCEEECCCCccccCChhH-ccccccCCEEECCCCccceeChhh-ccCCCC
Confidence 5688899999854 2332211112 25788888888887763221112 246888888888888665432222 346778
Q ss_pred CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++|+|++|+++......+ ..+++|+...+..+
T Consensus 154 L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n 186 (477)
T 2id5_A 154 LEQLTLEKCNLTSIPTEAL-SHLHGLIVLRLRHL 186 (477)
T ss_dssp CCEEEEESCCCSSCCHHHH-TTCTTCCEEEEESC
T ss_pred CCEEECCCCcCcccChhHh-cccCCCcEEeCCCC
Confidence 8888888887554332333 35677776666654
No 62
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.84 E-value=9.9e-06 Score=71.86 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=14.8
Q ss_pred CCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790 74 CPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 74 C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~ 111 (198)
+++|++|++++|.+++-.- ...+++|++|++++|+
T Consensus 286 l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSC
T ss_pred CCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCc
Confidence 4444444444443332110 2344445555554444
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.80 E-value=3.8e-07 Score=82.99 Aligned_cols=10 Identities=0% Similarity=0.136 Sum_probs=4.7
Q ss_pred Cccccccccc
Q 035790 172 PKLMLVQIKF 181 (198)
Q Consensus 172 ~~~~~l~~~~ 181 (198)
.+|+.|+++.
T Consensus 547 ~~L~~L~l~~ 556 (606)
T 3t6q_A 547 SQQRTINLRQ 556 (606)
T ss_dssp HTSSEEECTT
T ss_pred CCCCEEeCCC
Confidence 3444454444
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.80 E-value=1.8e-07 Score=84.05 Aligned_cols=86 Identities=13% Similarity=0.027 Sum_probs=42.1
Q ss_pred CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790 49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV 128 (198)
Q Consensus 49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~ 128 (198)
+++|++|++++|..++........++++|+.|++++|.+++..- ....++++|++|++++|.+++..+......+++|+
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 44555555544433211111122346666666666665443221 12345667777777777654322222223566666
Q ss_pred EEEecCC
Q 035790 129 VEVIRSD 135 (198)
Q Consensus 129 ~~~i~~~ 135 (198)
...+..+
T Consensus 474 ~L~l~~n 480 (570)
T 2z63_A 474 FLDLSQC 480 (570)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 6666654
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.79 E-value=6.7e-07 Score=74.69 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=40.8
Q ss_pred cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhC-CC
Q 035790 48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAM-PR 126 (198)
Q Consensus 48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~-p~ 126 (198)
.+++|++|++++|..++.....+ .++++|++|++++|.+++..... ...+++|++|++++|+++......+. .+ +.
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~ 249 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSS 249 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSCCCBCSSSSCC-CCCTT
T ss_pred hCcCCCEEECCCCCcCCcCHHHh-cCCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCCCcccCHHHHH-hhhcc
Confidence 34556666665555433211222 34566666666666554322111 24566666666666665443222222 23 25
Q ss_pred CcEEEecCC
Q 035790 127 LVVEVIRSD 135 (198)
Q Consensus 127 L~~~~i~~~ 135 (198)
|+...+..+
T Consensus 250 L~~L~L~~N 258 (306)
T 2z66_A 250 LAFLNLTQN 258 (306)
T ss_dssp CCEEECTTC
T ss_pred CCEEEccCC
Confidence 555555544
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.79 E-value=1.1e-05 Score=68.08 Aligned_cols=82 Identities=24% Similarity=0.313 Sum_probs=38.4
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|++|++++ .+++- ..++ .+++|++|++++|..++. .. ..++++|++|++++|.+++-.- ...+++
T Consensus 82 ~~l~~L~~L~L~~n~l~~~--~~~~-~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~~ 152 (308)
T 1h6u_A 82 KNLTKITELELSGNPLKNV--SAIA-GLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLYLDLNQITNISP---LAGLTN 152 (308)
T ss_dssp TTCCSCCEEECCSCCCSCC--GGGT-TCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG---GGGCTT
T ss_pred ccCCCCCEEEccCCcCCCc--hhhc-CCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEECCCCccCcCcc---ccCCCC
Confidence 4566666666633 22221 1222 355666666655554221 11 2345555555555554433211 334555
Q ss_pred CcEEEeeceecC
Q 035790 102 MRFLWMSSCRLT 113 (198)
Q Consensus 102 L~~L~L~~c~iT 113 (198)
|++|++++|.++
T Consensus 153 L~~L~l~~n~l~ 164 (308)
T 1h6u_A 153 LQYLSIGNAQVS 164 (308)
T ss_dssp CCEEECCSSCCC
T ss_pred ccEEEccCCcCC
Confidence 555555555533
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.76 E-value=1.1e-06 Score=79.21 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=53.7
Q ss_pred CCCCCCcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCC
Q 035790 8 HATGEPMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSP 86 (198)
Q Consensus 8 ~~t~~~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~ 86 (198)
.++..-...++..+...+++|++|+|++ .+++..-..++ .+++|++|+|++|..++.. . ..++++|+.|+|++|.
T Consensus 16 ~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~ 91 (487)
T 3oja_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY 91 (487)
T ss_dssp SCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSE
T ss_pred cCchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCc
Confidence 3556666677777777788999999955 33443223343 6899999999998873211 1 3568889988888886
Q ss_pred CCh
Q 035790 87 FGD 89 (198)
Q Consensus 87 ~tD 89 (198)
+++
T Consensus 92 l~~ 94 (487)
T 3oja_A 92 VQE 94 (487)
T ss_dssp EEE
T ss_pred CCC
Confidence 653
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.76 E-value=3.3e-07 Score=83.40 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=6.1
Q ss_pred hhCCCCceeEe
Q 035790 23 RNCRKLTRLAV 33 (198)
Q Consensus 23 ~~c~~L~~L~L 33 (198)
..+++|++|++
T Consensus 373 ~~l~~L~~L~l 383 (606)
T 3t6q_A 373 RNLSHLQSLNL 383 (606)
T ss_dssp TTCTTCCEEEC
T ss_pred ccCCCCCEEEC
Confidence 34555666655
No 69
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.75 E-value=4.2e-06 Score=69.37 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=27.4
Q ss_pred cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecC
Q 035790 73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRS 134 (198)
Q Consensus 73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~ 134 (198)
++++|+.|++++|.+++-. ....+++|++|++++|++++. .. ...+++|+...+..
T Consensus 126 ~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT--GG-LTRLKKVNWIDLTG 181 (263)
T ss_dssp TCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC--TT-STTCCCCCEEEEEE
T ss_pred CcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch--HH-hccCCCCCEEeCCC
Confidence 4555555555555554431 134455566666666554443 11 22455555444443
No 70
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.74 E-value=1e-06 Score=72.02 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=16.5
Q ss_pred cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceec
Q 035790 73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL 112 (198)
Q Consensus 73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~i 112 (198)
++++|++|++++|.++.-.- ....++++|++|+|++|.+
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC
T ss_pred ccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcC
Confidence 34455555555554432110 1113345555555555543
No 71
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.73 E-value=3.8e-07 Score=83.00 Aligned_cols=39 Identities=28% Similarity=0.490 Sum_probs=16.2
Q ss_pred CCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceec
Q 035790 74 CPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL 112 (198)
Q Consensus 74 C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~i 112 (198)
+++|++|++++|.+++..+.....++++|++|++++|++
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 444444444444433321112223445555555555543
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.72 E-value=3.4e-06 Score=77.46 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=68.9
Q ss_pred HHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcC
Q 035790 21 IVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHY 99 (198)
Q Consensus 21 i~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~ 99 (198)
++..+++|++|+|++ .+++..-..++ .+++|++|+|++|..+...-. +..++++|+.|+|++|.++.-. ..+..++
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l 146 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLP-RGIFHNT 146 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCcCCCCCHH-HHcCCCCCCEEEeeCCCCCCCC-HHHhccC
Confidence 456788888888854 23433222333 578888888888876432222 2246888888888888766321 1123577
Q ss_pred CCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 100 YNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 100 ~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
++|++|+|++|.++...-..+ ..+++|+...+..+
T Consensus 147 ~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N 181 (597)
T 3oja_B 147 PKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSN 181 (597)
T ss_dssp TTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECTTS
T ss_pred CCCCEEEeeCCcCCCCChhhh-hcCCcCcEEECcCC
Confidence 888888888887543222222 35677877777665
No 73
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.72 E-value=1.9e-06 Score=74.48 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=61.5
Q ss_pred HHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcC
Q 035790 21 IVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHY 99 (198)
Q Consensus 21 i~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~ 99 (198)
+...+++|++|++++ .+++.....++ .+++|++|+++++..++..-.. ..++++|++|++++|.+++-. ..+..++
T Consensus 64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~-~~~~~~l 140 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTVLVLERNDLSSLP-RGIFHNT 140 (390)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred HhcccccCcEEECCCCcccccChhhcc-CCCCcCEEECCCCCCCcCCHHH-hcCCCCCCEEECCCCccCcCC-HHHhcCC
Confidence 346678888888854 23432222333 4677888888777653322122 245777777777777665321 1112456
Q ss_pred CCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 100 YNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 100 ~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
++|++|++++|.++...-..+ ..+++|+...+..+
T Consensus 141 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 141 PKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSN 175 (390)
T ss_dssp TTCCEEECCSSCCCBCCTTTT-SSCTTCCEEECCSS
T ss_pred CCCcEEECCCCccCccChhhc-cCCCCCCEEECCCC
Confidence 777777777776443211112 24566666666554
No 74
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.70 E-value=1.1e-05 Score=76.32 Aligned_cols=40 Identities=20% Similarity=0.059 Sum_probs=19.8
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD 62 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~ 62 (198)
..|++|++|+|++ .++......+...+++|++|++++|..
T Consensus 123 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 4577777777743 112111111212456666666666555
No 75
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.69 E-value=5.7e-07 Score=81.81 Aligned_cols=110 Identities=10% Similarity=-0.089 Sum_probs=55.3
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|++|++++ .++... ..++ .+++|+.|++++|..++..-.....++++|+.|++++|.++...-. ...++++
T Consensus 373 ~~~~~L~~L~L~~n~l~~~~-~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 449 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAIIMS-ANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTS 449 (606)
T ss_dssp HCCSCCCEEECCSCSEEEEC-CCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-TTTTCTT
T ss_pred ccCCcccEeECCCCccccch-hhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh-hhcCCCC
Confidence 4567777777743 112111 1122 4567777777666552221111223566777777777655432211 1345667
Q ss_pred CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++|++++|++++..+......+++|+...+..+
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 7777777776554222222234566665555543
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.69 E-value=5.6e-05 Score=67.65 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=63.2
Q ss_pred HHhhCCCCceeEecC-CCCHHHHHHH--HhcCCCCcEEEeeccCCChHH-HHHHHhcCCCCceEEecCCCCChHHHHHHH
Q 035790 21 IVRNCRKLTRLAVSG-LLTDRAFGYI--GKYGKLIRTLSVAFAGDSDMG-LKYVLEGCPKLQKLEIRDSPFGDAALRSGL 96 (198)
Q Consensus 21 i~~~c~~L~~L~L~g-~lTD~~L~~I--~~~~~~L~~L~L~~c~~tD~g-l~~i~~~C~~L~~L~L~~c~~tD~~l~~i~ 96 (198)
+...+++|++|++++ .+++...... ...+++|++|++++|..++.. .......+++|+.|++++|.++. +....
T Consensus 329 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~ 406 (549)
T 2z81_A 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP--MPDSC 406 (549)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC--CCSCC
T ss_pred HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc--CChhh
Confidence 345799999999965 4577655432 235799999999999885432 22345679999999999997762 22223
Q ss_pred hcCCCCcEEEeeceecC
Q 035790 97 HHYYNMRFLWMSSCRLT 113 (198)
Q Consensus 97 ~~~~~L~~L~L~~c~iT 113 (198)
..+++|++|++++|+++
T Consensus 407 ~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 407 QWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CCCTTCCEEECTTSCCS
T ss_pred cccccccEEECCCCCcc
Confidence 45667777777777643
No 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.65 E-value=2.3e-06 Score=67.68 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=54.7
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|++|++++ .++.-.-. +...+++|++|+++++..+...- .+..++++|++|++++|.++.-.- ....++++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~ 125 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQ 125 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred cccccCcEEECCCCccCccChh-hcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCEEEcCCCcCcccCH-hHhccCCc
Confidence 4566677777643 22321111 11245677777777665531111 112456677777777765543211 11245677
Q ss_pred CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++|+|++|+++.-.- .....+++|+...+..+
T Consensus 126 L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 126 LKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSC
T ss_pred CCEEECCCCccceeCH-HHhccCCCccEEEecCC
Confidence 7777777776442111 11234566666666554
No 78
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.65 E-value=8.5e-07 Score=79.69 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=17.7
Q ss_pred cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceec
Q 035790 73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL 112 (198)
Q Consensus 73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~i 112 (198)
++++|+.|++++|.+++..-.. ..++++|++|++++|++
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMASNQL 506 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCC
T ss_pred cccCCCEEECCCCccccCChhh-hhcccCCCEEeCCCCcC
Confidence 3455555555555444322111 23455555555555543
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.63 E-value=2.6e-06 Score=70.25 Aligned_cols=84 Identities=11% Similarity=0.183 Sum_probs=38.4
Q ss_pred CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790 49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV 128 (198)
Q Consensus 49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~ 128 (198)
+++|++|+|+++..+..... ...++++|++|++++|.++.-.-. ...++++|++|+|++|+++.-.-..+ ..++.|+
T Consensus 132 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~ 208 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQSLPKG-VFDKLTSLKELRLYNNQLKRVPEG-AFDKLTELKTLKLDNNQLKRVPEGAF-DSLEKLK 208 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCC
T ss_pred CcCCCEEECCCCcCCccCHh-HccCCcccceeEecCCcCcEeChh-HhccCCCcCEEECCCCcCCcCCHHHh-ccccCCC
Confidence 45555555555443211111 113455666666666544332111 12345666666666666442211111 2456666
Q ss_pred EEEecCC
Q 035790 129 VEVIRSD 135 (198)
Q Consensus 129 ~~~i~~~ 135 (198)
...+..+
T Consensus 209 ~L~l~~N 215 (270)
T 2o6q_A 209 MLQLQEN 215 (270)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 5555543
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.63 E-value=6.8e-06 Score=74.54 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=63.2
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCCh-HHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSD-MGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD-~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
..+++|++|++++ .+++.....++ .+++|++|+++++..++ ..+.....++++|+.|++++|.+++..-......++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 4567777777744 33543333333 57788888888776643 222223356788888888887665421111234567
Q ss_pred CCcEEEeeceecCHHHHHHHHHhC-CCCcEEEecCC
Q 035790 101 NMRFLWMSSCRLTRQGCQEIAQAM-PRLVVEVIRSD 135 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~gl~~La~~~-p~L~~~~i~~~ 135 (198)
+|++|++++|+++.... ... +.|+...+..+
T Consensus 429 ~L~~L~l~~n~l~~~~~----~~l~~~L~~L~L~~N 460 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVF----RCLPPKVKVLDLHNN 460 (562)
T ss_dssp TCCEEECCSSCCCGGGG----SSCCTTCSEEECCSS
T ss_pred cCCEEECCCCCCCcchh----hhhcCcCCEEECCCC
Confidence 77788887777664221 223 46766666654
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.63 E-value=3e-06 Score=69.78 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=70.8
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
...+++|++|++++ .++......++ .+++|++|+++++..+...-.. ..++++|++|++++|.+++..+.....+++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~ 149 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred ccCCcCCCEEECCCCccCccChhhhc-CCccccEEECCCCCccccCchh-cccCCCCCEEECcCCccceecCchhhccCC
Confidence 35689999999965 33443333343 5799999999998763322111 346899999999999887644333456799
Q ss_pred CCcEEEeeceecCH---HHHHHHHHhCCCCc
Q 035790 101 NMRFLWMSSCRLTR---QGCQEIAQAMPRLV 128 (198)
Q Consensus 101 ~L~~L~L~~c~iTd---~gl~~La~~~p~L~ 128 (198)
+|++|++++|+++. ..+..+. ..+.|+
T Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~l~ 179 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIYCTDLRVLH-QMPLLN 179 (276)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHH-TCTTCC
T ss_pred CCCEEECCCCCCCcCCHHHhhhhh-hccccc
Confidence 99999999998544 3444443 455554
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.62 E-value=1.9e-06 Score=82.31 Aligned_cols=111 Identities=13% Similarity=-0.000 Sum_probs=68.0
Q ss_pred hhCCCCceeEecCC-CCHHH-HHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHH-HHhcC
Q 035790 23 RNCRKLTRLAVSGL-LTDRA-FGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRS-GLHHY 99 (198)
Q Consensus 23 ~~c~~L~~L~L~g~-lTD~~-L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~-i~~~~ 99 (198)
.++++|++|+|++. ..... -..+ ..+++|+.|+|++|..+...-..+ .++++|++|++++|.+++..... ...++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSSKIYFLHPDAF-QGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEECTTCCCCEECTTSS-CSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred cccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEECCCCcCcccCHhHc-cCCcccCEeeCcCCCCCcccccCcccccc
Confidence 46777888888542 11110 1222 357888888888877643222222 46888888888888776533221 13578
Q ss_pred CCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 100 YNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 100 ~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
++|++|+|++|.++..........+++|+...+..+
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 888888888888654332222346788887777665
No 83
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.61 E-value=2.6e-06 Score=68.72 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=71.2
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
+..+++|++|+|++ .++.-.-..++ .+++|++|+|+++..+...-.. ..++++|++|++++|.++...-.. ...++
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~ 129 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSNRLENVQHKM-FKGLESLKTLMLRSNRITCVGNDS-FIGLS 129 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCGGG-GTTCSSCCEEECTTSCCCCBCTTS-STTCT
T ss_pred hccCCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCCccCccCHhH-hcCCcCCCEEECCCCcCCeECHhH-cCCCc
Confidence 45788999999954 23432212233 5789999999988763222122 256899999999999776432111 35788
Q ss_pred CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
+|++|+|++|.++.-.-..+ ..+++|+...+..+
T Consensus 130 ~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N 163 (220)
T 2v70_A 130 SVRLLSLYDNQITTVAPGAF-DTLHSLSTLNLLAN 163 (220)
T ss_dssp TCSEEECTTSCCCCBCTTTT-TTCTTCCEEECCSC
T ss_pred cCCEEECCCCcCCEECHHHh-cCCCCCCEEEecCc
Confidence 99999999998554221222 35788887777765
No 84
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.61 E-value=2.2e-05 Score=69.57 Aligned_cols=102 Identities=10% Similarity=0.117 Sum_probs=54.2
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
...+++|++|++++ .+++.. .+ ..+++|+.|++++|..++.. . ...+++|+.|++++|.+++..- ...++
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~--~~-~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~ 331 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNIS--PL-AGLTALTNLELNENQLEDIS--P-ISNLKNLTYLTLYFNNISDISP---VSSLT 331 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCG--GG-TTCTTCSEEECCSSCCSCCG--G-GGGCTTCSEEECCSSCCSCCGG---GGGCT
T ss_pred hhcCCCCCEEECCCCccCccc--cc-cCCCccCeEEcCCCcccCch--h-hcCCCCCCEEECcCCcCCCchh---hccCc
Confidence 34677777777743 223211 12 24667777777666553211 1 2456667777776666554321 34566
Q ss_pred CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
+|++|++++|++++. ..+ ..+++|+...+..+
T Consensus 332 ~L~~L~l~~n~l~~~--~~l-~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDV--SSL-ANLTNINWLSAGHN 363 (466)
T ss_dssp TCCEEECCSSCCCCC--GGG-TTCTTCCEEECCSS
T ss_pred cCCEeECCCCccCCc--hhh-ccCCCCCEEeCCCC
Confidence 666666666664432 222 24566665555543
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.61 E-value=1.8e-05 Score=65.48 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=46.6
Q ss_pred hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHH-----------
Q 035790 24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAA----------- 91 (198)
Q Consensus 24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~----------- 91 (198)
.+++|++|++++ .+++- ..+. .+++|++|+++++..++..- ..++++|+.|++++|.+++-.
T Consensus 39 ~l~~L~~L~l~~n~i~~l--~~l~-~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~ 112 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSL--AGMQ-FFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF 112 (263)
T ss_dssp HHTTCSEEECTTSCCCCC--TTGG-GCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEE
T ss_pred hcCcCcEEECcCCCcccc--hHHh-hCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCccccCcccEEE
Confidence 345566666633 12221 1222 35556666665554422111 234555555555555443310
Q ss_pred --------HHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 92 --------LRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 92 --------l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
+.. ..++++|+.|++++|++++- .. ...+++|+...+..+
T Consensus 113 L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~--~~-l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 113 LDNNELRDTDS-LIHLKNLEILSIRNNKLKSI--VM-LGFLSKLEVLDLHGN 160 (263)
T ss_dssp CCSSCCSBSGG-GTTCTTCCEEECTTSCCCBC--GG-GGGCTTCCEEECTTS
T ss_pred ccCCccCCChh-hcCcccccEEECCCCcCCCC--hH-HccCCCCCEEECCCC
Confidence 111 34556666666666664432 11 224566665555544
No 86
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.60 E-value=1.2e-06 Score=77.14 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=29.0
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPF 87 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~ 87 (198)
.++++|++|+|++ .+++-....+. .+++|++|+|+++..++-.-. ...++++|++|++++|.+
T Consensus 85 ~~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 85 KHLRHLEILQLSRNHIRTIEIGAFN-GLANLNTLELFDNRLTTIPNG-AFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp SSCSSCCEEECCSSCCCEECGGGGT-TCSSCCEEECCSSCCSSCCTT-TSCSCSSCCEEECCSCCC
T ss_pred hCCCCCCEEECCCCcCCccChhhcc-CCccCCEEECCCCcCCeeCHh-HhhccccCceeeCCCCcc
Confidence 4566677776643 22322212222 356666666666544211111 113455555555555544
No 87
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.59 E-value=3.6e-06 Score=67.84 Aligned_cols=109 Identities=13% Similarity=0.132 Sum_probs=62.9
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|++|+|++ .++.-.-..+. .+++|++|+|+++..+.-.- .+..++++|+.|+|++|.++...-. ....+++
T Consensus 53 ~~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~ 129 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGNKITELPK-SLFEGLFSLQLLLLNANKINCLRVD-AFQDLHN 129 (220)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTT
T ss_pred hCCCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCCcCCccCH-hHccCCCCCCEEECCCCCCCEeCHH-HcCCCCC
Confidence 4567777777744 22322112222 46778888887776631111 1224677888888888866543211 2356788
Q ss_pred CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++|+|++|+++.-.-..+ ..+++|+...+..+
T Consensus 130 L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 130 LNLLSLYDNKLQTIAKGTF-SPLRAIQTMHLAQN 162 (220)
T ss_dssp CCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSS
T ss_pred CCEEECCCCcCCEECHHHH-hCCCCCCEEEeCCC
Confidence 8888888887543222222 24677777766654
No 88
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.59 E-value=2.5e-06 Score=75.50 Aligned_cols=39 Identities=21% Similarity=0.110 Sum_probs=19.1
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD 62 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~ 62 (198)
.++++|++|+|++ .++.-.-..+ ..+++|++|+|+++..
T Consensus 120 ~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 120 NGLASLNTLELFDNWLTVIPSGAF-EYLSKLRELWLRNNPI 159 (452)
T ss_dssp TTCTTCCEEECCSSCCSBCCTTTS-SSCTTCCEEECCSCCC
T ss_pred cCcccCCEEECCCCcCCccChhhh-cccCCCCEEECCCCCc
Confidence 4566777777743 2221111111 2456666666666554
No 89
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.59 E-value=2e-06 Score=75.86 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=19.9
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD 62 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~ 62 (198)
.++++|++|+|++ .++.-.-..+ ..+++|++|+|+++..
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPNGAF-VYLSKLKELWLRNNPI 148 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCTTTS-CSCSSCCEEECCSCCC
T ss_pred cCCccCCEEECCCCcCCeeCHhHh-hccccCceeeCCCCcc
Confidence 4567777777743 2222111112 2456666666666554
No 90
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.59 E-value=4.2e-07 Score=77.02 Aligned_cols=88 Identities=14% Similarity=0.085 Sum_probs=44.0
Q ss_pred hhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 23 RNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 23 ~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
..+++|++|++++ .+++..-..++ .+++|++|+|+++..+...-..+ .++++|++|++++|.++...- ....+++
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~ 149 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLP-PSISSLP 149 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGG-GGCTTCCEEECCSSEEESCCC-GGGGGCT
T ss_pred hCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHH-hCCCCCCEEeCCCCccCCcCC-hHHhcCC
Confidence 4566666666642 22222222233 45666777666665531111112 346666666666665442111 1124566
Q ss_pred CCcEEEeeceecC
Q 035790 101 NMRFLWMSSCRLT 113 (198)
Q Consensus 101 ~L~~L~L~~c~iT 113 (198)
+|++|++++|+++
T Consensus 150 ~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 150 NLVGITFDGNRIS 162 (313)
T ss_dssp TCCEEECCSSCCE
T ss_pred CCCeEECcCCccc
Confidence 6666666666644
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.58 E-value=2.7e-06 Score=69.40 Aligned_cols=85 Identities=12% Similarity=0.107 Sum_probs=43.4
Q ss_pred cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCC
Q 035790 48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL 127 (198)
Q Consensus 48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L 127 (198)
.+++|++|+|+++..+.-.- .+..++++|++|++++|.++.-.-. ...++++|++|+|++|+++...-..+ ..+++|
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L 181 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAG-AFDKLTNLQTLSLSTNQLQSVPHGAF-DRLGKL 181 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTC
T ss_pred ccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHH-HcCcCcCCCEEECCCCcCCccCHHHH-hCCCCC
Confidence 34566666666554421111 1123467777777777765432211 13456677777777776442211112 245666
Q ss_pred cEEEecCC
Q 035790 128 VVEVIRSD 135 (198)
Q Consensus 128 ~~~~i~~~ 135 (198)
+...+..+
T Consensus 182 ~~L~l~~N 189 (251)
T 3m19_A 182 QTITLFGN 189 (251)
T ss_dssp CEEECCSC
T ss_pred CEEEeeCC
Confidence 66666554
No 92
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.58 E-value=3.1e-06 Score=76.27 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=53.2
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
.++++|++|+|++ .++.-.-..+ ..+++|++|+|+++..+.-.-. ...++++|++|++++|.++.-.- ....++++
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~~f-~~L~~L~~L~Ls~N~l~~l~~~-~f~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~ 149 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLEN-FPIGHLKT 149 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCEECGG-GGTTCTTCCEEECTTSCCCCSTT-CCCTTCTT
T ss_pred hCCCCCCEEECCCCcCCCcChhHh-cCCCCCCEEEccCCcCCCCCHH-HhcCCCCCCEEECCCCcCCCCCh-hhhhcCcc
Confidence 4566777777743 1221000111 2456777777766654221111 12456667777776665543110 01245666
Q ss_pred CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++|++++|.++..........++.|+...+..+
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 7777777666433222122234566665555443
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.58 E-value=3.2e-06 Score=68.45 Aligned_cols=108 Identities=12% Similarity=0.103 Sum_probs=57.7
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|++|+|++ .++.-.-. +...+++|+.|+|+++..+.-.- .+..++++|+.|++++|.++. +.....++++
T Consensus 61 ~~l~~L~~L~L~~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~ 136 (229)
T 3e6j_A 61 DSLINLKELYLGSNQLGALPVG-VFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLTE--LPRGIERLTH 136 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCS--CCTTGGGCTT
T ss_pred hCccCCcEEECCCCCCCCcChh-hcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCcccc--cCcccccCCC
Confidence 4566777777743 12211111 11246777777777765532111 112356777777777776552 2122356777
Q ss_pred CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++|+|++|+++.-.- .....+++|+...+..+
T Consensus 137 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 137 LTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred CCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCC
Confidence 8888888777542211 11235677776666654
No 94
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.56 E-value=1.3e-05 Score=73.87 Aligned_cols=100 Identities=19% Similarity=0.244 Sum_probs=58.1
Q ss_pred CCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEE
Q 035790 27 KLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFL 105 (198)
Q Consensus 27 ~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L 105 (198)
.|+.|+|++ .++. +..++ .+++|+.|+|+++..+ .+.....++++|+.|+|++|.++. +. ...++++|++|
T Consensus 442 ~L~~L~Ls~n~l~~--lp~~~-~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCHLE-QLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSS--CCCGG-GGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEE
T ss_pred CceEEEecCCCCCC--CcCcc-ccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEE
Confidence 577777744 2232 22233 4677777777777653 111122457777777777776664 32 24567777777
Q ss_pred EeeceecCHHH-HHHHHHhCCCCcEEEecCC
Q 035790 106 WMSSCRLTRQG-CQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 106 ~L~~c~iTd~g-l~~La~~~p~L~~~~i~~~ 135 (198)
+|++|+++... -..+ ..+++|+...+..+
T Consensus 514 ~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N 543 (567)
T 1dce_A 514 LLCNNRLQQSAAIQPL-VSCPRLVLLNLQGN 543 (567)
T ss_dssp ECCSSCCCSSSTTGGG-GGCTTCCEEECTTS
T ss_pred ECCCCCCCCCCCcHHH-hcCCCCCEEEecCC
Confidence 77777755432 1222 35677777666654
No 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.54 E-value=3.7e-06 Score=71.02 Aligned_cols=106 Identities=10% Similarity=0.090 Sum_probs=64.5
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|++|++++ .+++.....+...+++|++|++++|..++. ... ..+++|++|++++|.+++-.- ....+++
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~-~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~ 215 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ-VVFAKLKTLDLSSNKLAFMGP--EFQSAAG 215 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC-CCCTTCCEEECCSSCCCEECG--GGGGGTT
T ss_pred hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccc-cccccCCEEECCCCcCCcchh--hhcccCc
Confidence 3467777777744 335544445555567788888877766322 111 137788888888887654221 1456788
Q ss_pred CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++|++++|+++. +......+++|+...+..+
T Consensus 216 L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 216 VTWISLRNNKLVL--IEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CSEEECTTSCCCE--ECTTCCCCTTCCEEECTTC
T ss_pred ccEEECcCCcccc--hhhHhhcCCCCCEEEccCC
Confidence 8888888887552 2112235677777777665
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.54 E-value=4.7e-06 Score=75.07 Aligned_cols=83 Identities=8% Similarity=-0.006 Sum_probs=41.0
Q ss_pred CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790 49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV 128 (198)
Q Consensus 49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~ 128 (198)
+++|++|+|++|..++..-..+ .++++|+.|++++|.+++.....+...+++|++|+|++|.++.. .... .++.|+
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~-~l~~L~ 194 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQV-VFAKLK 194 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCC-CCTTCC
T ss_pred cCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccc-cCCCCC
Confidence 4566666666665532211112 23566666666666655543333334556666666666654322 1111 245555
Q ss_pred EEEecCC
Q 035790 129 VEVIRSD 135 (198)
Q Consensus 129 ~~~i~~~ 135 (198)
...+..+
T Consensus 195 ~L~Ls~N 201 (487)
T 3oja_A 195 TLDLSSN 201 (487)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 5555543
No 97
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.52 E-value=2.4e-05 Score=69.81 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=33.1
Q ss_pred hhCCCCceeEecC-CCCH-HHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCC
Q 035790 23 RNCRKLTRLAVSG-LLTD-RAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFG 88 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD-~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~t 88 (198)
..+++|++|++++ .+++ ..+......+++|++|++++|..++..-.....++++|+.|++++|.++
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 4567777777744 3343 1222222356777777777766532100011233455555555555554
No 98
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.49 E-value=1.5e-05 Score=73.60 Aligned_cols=105 Identities=17% Similarity=0.200 Sum_probs=67.3
Q ss_pred HHhhCCCCceeE-ecC---------CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChH
Q 035790 21 IVRNCRKLTRLA-VSG---------LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDA 90 (198)
Q Consensus 21 i~~~c~~L~~L~-L~g---------~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~ 90 (198)
.+..+++|+.|+ ++. .+++..+..+.. .+|+.|+|+++..+. +.. ..++++|+.|++++|.++
T Consensus 404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-- 476 (567)
T 1dce_A 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY--ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-- 476 (567)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH--TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC--
T ss_pred HHHHHHhcccCcchhhcccchhhhhhhhcccccccCc--cCceEEEecCCCCCC--CcC-ccccccCcEeecCccccc--
Confidence 345667777777 321 123344555442 468888888887643 223 356888899999888776
Q ss_pred HHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 91 ALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 91 ~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
.+-....++++|++|+|++|+++. +..+ ..+++|+...+..+
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~--lp~l-~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN--VDGV-ANLPRLQELLLCNN 518 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC--CGGG-TTCSSCCEEECCSS
T ss_pred ccchhhhcCCCCCEEECCCCCCCC--Cccc-CCCCCCcEEECCCC
Confidence 222234678889999998888664 3323 35788888777765
No 99
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.49 E-value=4e-06 Score=74.16 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=57.5
Q ss_pred CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790 26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF 104 (198)
Q Consensus 26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~ 104 (198)
++|++|+|++ .++...-..++ .+++|+.|+|+++..++.....+ .++++|++|+|++|.++.-.- ....++++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAF-NGLASLNTLELFDNWLTVIPS-GAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSBCCT-TTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhc-cCcccCCEEECCCCcCCccCh-hhhcccCCCCE
Confidence 4677777743 22332222233 56778888887776543222222 457778888887776553221 11345777777
Q ss_pred EEeeceecCHHHHHHHHHhCCCCcEEEecC
Q 035790 105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRS 134 (198)
Q Consensus 105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~ 134 (198)
|+|++|+++.-.-.. ...+++|+...+..
T Consensus 152 L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 152 LWLRNNPIESIPSYA-FNRVPSLMRLDLGE 180 (452)
T ss_dssp EECCSCCCCEECTTT-TTTCTTCCEEECCC
T ss_pred EECCCCCcceeCHhH-HhcCCcccEEeCCC
Confidence 777777744211111 12466666666654
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.49 E-value=3e-06 Score=71.18 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=38.2
Q ss_pred cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCC
Q 035790 48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL 127 (198)
Q Consensus 48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L 127 (198)
.+++|++|+++++..+. +.....++++|+.|++++|.++.-.- ....++++|++|+|++|+++.-... +...+++|
T Consensus 75 ~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L 150 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPG-LLTPTPKL 150 (290)
T ss_dssp CCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTC
T ss_pred CCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCccChh-hcccccCC
Confidence 45555555555554421 11112345566666666665442211 1123456666666666654321100 11234555
Q ss_pred cEEEecCC
Q 035790 128 VVEVIRSD 135 (198)
Q Consensus 128 ~~~~i~~~ 135 (198)
+...+..+
T Consensus 151 ~~L~L~~N 158 (290)
T 1p9a_G 151 EKLSLANN 158 (290)
T ss_dssp CEEECTTS
T ss_pred CEEECCCC
Confidence 55555543
No 101
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.45 E-value=0.00012 Score=62.35 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=33.7
Q ss_pred CCCCceEEecCCCCChHHHHHH---HhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 74 CPKLQKLEIRDSPFGDAALRSG---LHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 74 C~~L~~L~L~~c~~tD~~l~~i---~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
++.|+.++++++.+++.++..+ ..++++|++|++++|+++.-.- .+...+++|+...+..+
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH-HHHhcCCCCCEEEeeCC
Confidence 4444444444444555544433 3567778888888877552111 11235677777766655
No 102
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.44 E-value=2.3e-05 Score=72.20 Aligned_cols=106 Identities=13% Similarity=0.151 Sum_probs=48.3
Q ss_pred CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790 26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF 104 (198)
Q Consensus 26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~ 104 (198)
++|++|++++ .++.-.-..++ .+++|++|+++++..++..-..+ .++++|+.|++++|.++.-.-. ...++++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKLEPELC-QKLPMLKVLNLQHNELSQLSDK-TFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGG-GGTTCSEEECCSSCCCCCCTTHH-HHCTTCCEEECCSSCCCCCCTT-TTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHHHHh-CCCcCcEEECCCCccCccCHHHH-hcccCcCEEECCCCccCccChh-hhccCCCCCE
Confidence 4566666643 12221111222 35666666666655432221222 2366666666666654422111 1235666666
Q ss_pred EEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++++|.++.-.-..+ ..+++|+...+..+
T Consensus 102 L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPF-VKQKNLITLDLSHN 131 (680)
T ss_dssp EECCSSCCCCCCSCTT-TTCTTCCEEECCSS
T ss_pred EECCCCccCccChhHc-cccCCCCEEECCCC
Confidence 6666665332111111 24555655555543
No 103
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.43 E-value=1.3e-05 Score=69.16 Aligned_cols=105 Identities=10% Similarity=0.074 Sum_probs=74.4
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
+..+++|++|++++ .+++.....++ .+++|+.|+++++..++- ......+++|++|++++|.++.-. .....++
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~l~ 318 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFD 318 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSCCCCCG--GGHHHHT
T ss_pred HcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCcceecC--ccccccC
Confidence 46799999999965 33543333344 579999999999877431 112256899999999999776321 1134678
Q ss_pred CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
+|++|++++|+++... ...++.|+...+..+
T Consensus 319 ~L~~L~L~~N~i~~~~----~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 319 RLENLYLDHNSIVTLK----LSTHHTLKNLTLSHN 349 (390)
T ss_dssp TCSEEECCSSCCCCCC----CCTTCCCSEEECCSS
T ss_pred cCCEEECCCCccceeC----chhhccCCEEEcCCC
Confidence 9999999999966543 346788888888775
No 104
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=1.8e-05 Score=76.75 Aligned_cols=106 Identities=11% Similarity=0.083 Sum_probs=62.6
Q ss_pred hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccC-CCh----HHHHHHH---hcCCCCceEEecCCCCChHHHHH
Q 035790 24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAG-DSD----MGLKYVL---EGCPKLQKLEIRDSPFGDAALRS 94 (198)
Q Consensus 24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~-~tD----~gl~~i~---~~C~~L~~L~L~~c~~tD~~l~~ 94 (198)
++++|++|+|++ .++...-..++ .+++|+.|+|+++. .+. .++..+. ..+++|+.|++++|.++ .+..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~ 565 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPA 565 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCC
T ss_pred cCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCC
Confidence 678888888843 11222223343 57788888888876 454 2333332 34568888888888666 2222
Q ss_pred --HHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 95 --GLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 95 --i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
...++++|+.|+|++|+++ .+.. ...+++|+...+..+
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~--~lp~-~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR--HLEA-FGTNVKLTDLKLDYN 605 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC--BCCC-CCTTSEESEEECCSS
T ss_pred hhhhhcCCCCCEEECCCCCcc--cchh-hcCCCcceEEECcCC
Confidence 3456778888888887755 2222 234566666666554
No 105
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.42 E-value=1.6e-05 Score=73.84 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=87.5
Q ss_pred hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChH--H-HHHH---HhcCCCCceEEecCCCCChHHHHHHH
Q 035790 24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDM--G-LKYV---LEGCPKLQKLEIRDSPFGDAALRSGL 96 (198)
Q Consensus 24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~--g-l~~i---~~~C~~L~~L~L~~c~~tD~~l~~i~ 96 (198)
.+++|++|++++ .++ ..-..+...+++|+.|+|+++..+.- + +... .++|++|++|++++|.++. +....
T Consensus 431 ~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~ 507 (636)
T 4eco_A 431 KGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK--LSDDF 507 (636)
T ss_dssp CCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB--CCGGG
T ss_pred cCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc--cChhh
Confidence 456888888854 334 12223444678888888888766411 0 0000 1123388888888887762 22223
Q ss_pred --hcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC-----C--CchhHhHHHHHhHhhhc--cCCC-CCCCCcc
Q 035790 97 --HHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD-----D--EEETDNYVETLYMYRSL--EGPR-HDAPKFV 164 (198)
Q Consensus 97 --~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~-----~--~~~~~~~~~~~~~y~sl--~g~r-~d~p~~v 164 (198)
.++++|++|+|++|+++. +..-...++.|+...+..+ + ...-...+.++...+.| ++-+ ...|..
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~- 584 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK- 584 (636)
T ss_dssp STTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-
T ss_pred hhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh-
Confidence 378888888888888664 3222235788887777432 0 01111223333333332 1111 233433
Q ss_pred eeecccCCcccccccccC-----CChhhhhhhc
Q 035790 165 TILRIIKPKLMLVQIKFA-----EPSDVCQKWG 192 (198)
Q Consensus 165 ~~l~~~~~~~~~l~~~~~-----~~~~~~~~~~ 192 (198)
...+|..|++++- .++++|..+-
T Consensus 585 -----~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 612 (636)
T 4eco_A 585 -----ITPNISVLDIKDNPNISIDLSYVCPYIE 612 (636)
T ss_dssp -----CCTTCCEEECCSCTTCEEECTTTHHHHH
T ss_pred -----HhCcCCEEECcCCCCccccHHhcchhhh
Confidence 2268888888886 6677776553
No 106
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.42 E-value=0.00013 Score=61.47 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=62.3
Q ss_pred HHHHhhCCCCceeEecC-CCCH-HHHHHHHhcCCCCcEEEeeccCCChH-HHHHHHhcCCCCceEEecCCCCCh-----H
Q 035790 19 GAIVRNCRKLTRLAVSG-LLTD-RAFGYIGKYGKLIRTLSVAFAGDSDM-GLKYVLEGCPKLQKLEIRDSPFGD-----A 90 (198)
Q Consensus 19 ~ai~~~c~~L~~L~L~g-~lTD-~~L~~I~~~~~~L~~L~L~~c~~tD~-gl~~i~~~C~~L~~L~L~~c~~tD-----~ 90 (198)
..+...+++|+.|+|+. .+++ ..+..+...+++|+.|+|+++..++. .+..+ +++ +|++|+|++|+++. .
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGGCSSHH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccccCcch
Confidence 33446799999999965 3343 23444445799999999999988443 44443 334 99999999998874 2
Q ss_pred H-HHHHHhcCCCCcEEEee
Q 035790 91 A-LRSGLHHYYNMRFLWMS 108 (198)
Q Consensus 91 ~-l~~i~~~~~~L~~L~L~ 108 (198)
. ...+...+|+|+.||=.
T Consensus 241 ~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHCTTCCEESSC
T ss_pred hHHHHHHHHCcccCeECCc
Confidence 2 33567889999999743
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.40 E-value=1.1e-05 Score=65.22 Aligned_cols=105 Identities=11% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790 26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF 104 (198)
Q Consensus 26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~ 104 (198)
++|++|+|++ .++...-..+. .+++|+.|+|+++..+.-.. .+..++++|+.|+|++|.++.-. ......+++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPV-GVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccCHHHhh-CccCCcEEECCCCCCCCcCh-hhcccCCCcCEEECCCCcCCccC-hhHhCcchhhCe
Confidence 7899999954 23332112233 57899999999987732111 12356899999999999876432 122357899999
Q ss_pred EEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|+|++|+++. +..-...+++|+...+..+
T Consensus 117 L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 117 LFMCCNKLTE--LPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp EECCSSCCCS--CCTTGGGCTTCSEEECCSS
T ss_pred EeccCCcccc--cCcccccCCCCCEEECCCC
Confidence 9999999662 2111257889988888765
No 108
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.38 E-value=2.6e-05 Score=65.74 Aligned_cols=12 Identities=42% Similarity=0.351 Sum_probs=7.3
Q ss_pred hhCCCCceeEec
Q 035790 23 RNCRKLTRLAVS 34 (198)
Q Consensus 23 ~~c~~L~~L~L~ 34 (198)
..+++|++|+++
T Consensus 97 ~~l~~L~~L~Ls 108 (330)
T 1xku_A 97 APLVKLERLYLS 108 (330)
T ss_dssp TTCTTCCEEECC
T ss_pred cCCCCCCEEECC
Confidence 346666666663
No 109
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.36 E-value=4.5e-05 Score=70.68 Aligned_cols=111 Identities=12% Similarity=0.090 Sum_probs=69.5
Q ss_pred HhhCCCCceeEecC-CCCHH-----------------HHHHHH-hcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEe
Q 035790 22 VRNCRKLTRLAVSG-LLTDR-----------------AFGYIG-KYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEI 82 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~-----------------~L~~I~-~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L 82 (198)
+..+++|++|+|++ .++.. .-..|+ ..+++|++|+|++|..+..--.. ..++++|+.|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEEC
Confidence 45788999999954 33542 112222 25789999999988652211122 246889999999
Q ss_pred cCCC-CChHHHHHHH------hcCCCCcEEEeeceecCHHHHHH--HHHhCCCCcEEEecCC
Q 035790 83 RDSP-FGDAALRSGL------HHYYNMRFLWMSSCRLTRQGCQE--IAQAMPRLVVEVIRSD 135 (198)
Q Consensus 83 ~~c~-~tD~~l~~i~------~~~~~L~~L~L~~c~iTd~gl~~--La~~~p~L~~~~i~~~ 135 (198)
++|. ++...+-... ..+++|++|++++|+++ .+.. ....+++|+...+..+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSC
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCC
Confidence 9987 8872222222 23588889999888866 2322 3346777777666554
No 110
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.36 E-value=1.9e-05 Score=66.53 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=73.5
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
+.++++|++|++++ .++.-. ....++|++|+++++..++.....+ .++++|++|++++|.+++..... ...++
T Consensus 167 ~~~l~~L~~L~l~~n~l~~l~----~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~ 240 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNITTIP----QGLPPSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGS-LANTP 240 (330)
T ss_dssp GGGCTTCCEEECCSSCCCSCC----SSCCTTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCCCEECTTT-GGGST
T ss_pred ccCCCCcCEEECCCCccccCC----ccccccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCceeChhh-ccCCC
Confidence 46789999999954 223210 0123799999999988754433333 46899999999999887643222 45789
Q ss_pred CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
+|++|++++|+++. +..-...+++|+...+..+
T Consensus 241 ~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 241 HLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp TCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSS
T ss_pred CCCEEECCCCcCcc--CChhhccCCCcCEEECCCC
Confidence 99999999999662 2111246788988888765
No 111
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.35 E-value=7.9e-06 Score=75.37 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=26.3
Q ss_pred cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHH-HhCCCCcEEEecC
Q 035790 73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIA-QAMPRLVVEVIRS 134 (198)
Q Consensus 73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La-~~~p~L~~~~i~~ 134 (198)
++++|++|++++|.++...... ..++++|++|++++|.++...-..+. ..++.|+...+..
T Consensus 119 ~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 119 KQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp TCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred ccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 3455555555555443321111 23455666666666553322112221 1245555555544
No 112
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.35 E-value=0.00013 Score=62.10 Aligned_cols=88 Identities=11% Similarity=-0.015 Sum_probs=43.2
Q ss_pred hhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 23 RNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 23 ~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
..+++|++|++++ .++...-..++ .+++|++|+++++..++.....+ .++++|++|++++|.++.-.- .....++
T Consensus 146 ~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~-~~~~~~~ 222 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQSYEPKSL-KSIQNVSHLILHMKQHILLLE-IFVDVTS 222 (353)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECSCSTTHHH-HHHHHTT
T ss_pred ccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcCccCHHHH-hccccCCeecCCCCccccchh-hhhhhcc
Confidence 4567777777743 22322112222 35666666666665432211122 335566666666665543331 2233455
Q ss_pred CCcEEEeeceecC
Q 035790 101 NMRFLWMSSCRLT 113 (198)
Q Consensus 101 ~L~~L~L~~c~iT 113 (198)
+|++|++++|.++
T Consensus 223 ~L~~L~L~~n~l~ 235 (353)
T 2z80_A 223 SVECLELRDTDLD 235 (353)
T ss_dssp TEEEEEEESCBCT
T ss_pred cccEEECCCCccc
Confidence 5666655555543
No 113
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.35 E-value=1.1e-05 Score=74.01 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=60.8
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
+..+++|++|+|++ .+++.....++ .+++|+.|+|++|..+. +......+++|+.|+|++|.++. +......++
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~ 324 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFD 324 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHT
T ss_pred hccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCc--cCcccccCC
Confidence 34577777777744 23433223333 46777777777766533 11122446778888887776652 111124567
Q ss_pred CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
+|++|+|++|.++... ...+|.|+...+..+
T Consensus 325 ~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 325 RLENLYLDHNSIVTLK----LSTHHTLKNLTLSHN 355 (597)
T ss_dssp TCSEEECCSSCCCCCC----CCTTCCCSEEECCSS
T ss_pred CCCEEECCCCCCCCcC----hhhcCCCCEEEeeCC
Confidence 7788888777754332 235677777776655
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.30 E-value=2.6e-05 Score=61.54 Aligned_cols=89 Identities=12% Similarity=0.197 Sum_probs=61.9
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
...+++|++|++++ .++.-.-..+ ..+++|++|+++++..+...-. ...++++|+.|++++|.+++-.- ....+++
T Consensus 72 ~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~ 148 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTNQLQSLPNGVF-DKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLYQNQLKSVPD-GVFDRLT 148 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCT-TTTTTCT
T ss_pred cCCCCCcCEEECCCCcCCccCHhHh-cCccCCCEEEcCCCcCcccCHh-HhccCCcCCEEECCCCccceeCH-HHhccCC
Confidence 35789999999954 2342111112 3689999999999876421111 23568999999999998764321 2246789
Q ss_pred CCcEEEeeceecC
Q 035790 101 NMRFLWMSSCRLT 113 (198)
Q Consensus 101 ~L~~L~L~~c~iT 113 (198)
+|++|+|++|.++
T Consensus 149 ~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 149 SLQYIWLHDNPWD 161 (208)
T ss_dssp TCCEEECCSCCBC
T ss_pred CccEEEecCCCee
Confidence 9999999999854
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.27 E-value=9.8e-06 Score=65.27 Aligned_cols=106 Identities=11% Similarity=0.186 Sum_probs=71.0
Q ss_pred CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790 26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF 104 (198)
Q Consensus 26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~ 104 (198)
++|++|++++ .++.-.-..+ ..+++|+.|+|+++..+...-..+ .++++|+.|+|++|.++.-. ..+...+++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKITELP-KSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCCcCCccC-HhHccCCCCCCE
Confidence 5899999954 2332211122 357899999999988743222222 56899999999999876322 122357899999
Q ss_pred EEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|+|++|+++.-.-..+ ..+++|+...+..+
T Consensus 109 L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 109 LLLNANKINCLRVDAF-QDLHNLNLLSLYDN 138 (220)
T ss_dssp EECCSSCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred EECCCCCCCEeCHHHc-CCCCCCCEEECCCC
Confidence 9999998654322222 25788988888765
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.27 E-value=1.2e-05 Score=69.23 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=6.8
Q ss_pred cCCCCcEEEeecee
Q 035790 98 HYYNMRFLWMSSCR 111 (198)
Q Consensus 98 ~~~~L~~L~L~~c~ 111 (198)
.+++|+.|+|++|+
T Consensus 161 ~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 161 KLPKLMLLDLSSNK 174 (361)
T ss_dssp -CTTCCEEECCSSC
T ss_pred cCCcCCEEECCCCC
Confidence 34555555555554
No 117
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.25 E-value=3.1e-06 Score=71.58 Aligned_cols=64 Identities=11% Similarity=-0.048 Sum_probs=30.8
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCC-CCceEEecCCCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCP-KLQKLEIRDSPFG 88 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~-~L~~L~L~~c~~t 88 (198)
..+++|++|++++ .++...-..++ .+++|++|+++++..+...-..+ ..++ +|+.|++++|.++
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEE
T ss_pred hCCCCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeee
Confidence 4567777777743 11211112232 45677777776665432111122 2343 5666666665443
No 118
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.25 E-value=1.3e-05 Score=76.46 Aligned_cols=91 Identities=18% Similarity=0.115 Sum_probs=63.5
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHH-HHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKY-VLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~-i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
.++++|++|+|++ .++...-..++ .+++|++|+|++|..++..... ...++++|++|++++|.++.........+++
T Consensus 70 ~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 70 RNLPNLRILDLGSSKIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp SSCTTCCEEECTTCCCCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred cCCCCCCEEECCCCcCcccCHhHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 6789999999954 33433223343 6889999999998775432221 1356899999999999876644333356899
Q ss_pred CCcEEEeeceecCH
Q 035790 101 NMRFLWMSSCRLTR 114 (198)
Q Consensus 101 ~L~~L~L~~c~iTd 114 (198)
+|++|+|++|.++.
T Consensus 149 ~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 149 SLKSIDFSSNQIFL 162 (844)
T ss_dssp SCCEEEEESSCCCC
T ss_pred CCCEEECCCCcCCe
Confidence 99999999987544
No 119
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=3.7e-05 Score=74.62 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=76.3
Q ss_pred HhhCCCCceeEecC-CCCHH-----------------HHHHHH-hcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEe
Q 035790 22 VRNCRKLTRLAVSG-LLTDR-----------------AFGYIG-KYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEI 82 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~-----------------~L~~I~-~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L 82 (198)
+.++++|+.|+|++ .++.+ .-..++ ..+++|+.|+|++|..+..--.. ..++++|+.|+|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEEC
Confidence 46789999999954 34552 112221 25899999999998752211122 356999999999
Q ss_pred cCCC-CCh----HHHHHHH---hcCCCCcEEEeeceecCHHHHHH--HHHhCCCCcEEEecCC
Q 035790 83 RDSP-FGD----AALRSGL---HHYYNMRFLWMSSCRLTRQGCQE--IAQAMPRLVVEVIRSD 135 (198)
Q Consensus 83 ~~c~-~tD----~~l~~i~---~~~~~L~~L~L~~c~iTd~gl~~--La~~~p~L~~~~i~~~ 135 (198)
++|. ++. .++..+. ..+++|++|+|++|.++ .+.. ....+++|+...+..+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTS
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCC
Confidence 9997 887 2233222 45679999999999976 3333 3447899998888765
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.23 E-value=2.7e-05 Score=59.96 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=68.3
Q ss_pred CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790 26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF 104 (198)
Q Consensus 26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~ 104 (198)
++|++|++++ .++...-..+ ..+++|++|+++++..+.-.- ....++++|+.|++++|.++.-.- .....+++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENKLQSLPN-GVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred CCCcEEEeCCCcccEeCHHHh-cCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCCCccccCH-HHhhCCcccCE
Confidence 6899999954 2332111112 357899999999887642111 122468999999999997763221 12357889999
Q ss_pred EEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|++++|.++.-.- .+...+++|+...+..+
T Consensus 105 L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 105 LALDTNQLKSVPD-GIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp EECCSSCCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred EECcCCcceEeCH-HHhcCCcccCEEEecCC
Confidence 9999998652211 12245788888877765
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.23 E-value=1.8e-05 Score=62.27 Aligned_cols=107 Identities=10% Similarity=0.059 Sum_probs=69.9
Q ss_pred CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790 26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF 104 (198)
Q Consensus 26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~ 104 (198)
++|++|++++ .++...-..+....++|+.|+|+++..+...-.. ..++++|++|++++|.++...-.. ..++++|++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~ 106 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKIKEISNKM-FLGLHQLKT 106 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSCCCCEECSSS-STTCTTCCE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEECCCCcCCccCHHH-hcCCCCCCE
Confidence 3899999954 2232211111236899999999998774321122 246899999999999876533221 357899999
Q ss_pred EEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|+|++|+++...-..+ ..+++|+...+..+
T Consensus 107 L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSF-EHLNSLTSLNLASN 136 (192)
T ss_dssp EECCSSCCCEECTTSS-TTCTTCCEEECTTC
T ss_pred EECCCCcCCeeCHHHh-hcCCCCCEEEeCCC
Confidence 9999998654211122 35788888888765
No 122
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.22 E-value=2.7e-05 Score=70.08 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=67.3
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
..++++|++|+|++ .++.-.-..+ ..+++|++|+|++|..+.-.-.. ..++++|++|++++|.++...+.....+++
T Consensus 96 f~~L~~L~~L~Ls~N~l~~l~~~~f-~~L~~L~~L~Ls~N~l~~l~~~~-~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~ 173 (635)
T 4g8a_A 96 YQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLT 173 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECGGGG-TTCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred hcCCCCCCEEEccCCcCCCCCHHHh-cCCCCCCEEECCCCcCCCCChhh-hhcCcccCeeccccCccccCCCchhhccch
Confidence 36789999999965 3343211222 36899999999998763211111 256999999999999876543333456899
Q ss_pred CCcEEEeeceec---CHHHHHHHH
Q 035790 101 NMRFLWMSSCRL---TRQGCQEIA 121 (198)
Q Consensus 101 ~L~~L~L~~c~i---Td~gl~~La 121 (198)
+|++|++++|++ ....+..+.
T Consensus 174 ~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 174 NLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHH
T ss_pred hhhhhcccCccccccccccccchh
Confidence 999999999974 344555554
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.21 E-value=2.4e-05 Score=62.99 Aligned_cols=88 Identities=11% Similarity=0.102 Sum_probs=61.7
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
+.++++|++|+|++ .++...-..+ ..+++|++|+|+++..+...-..+ .++++|+.|+|++|.++.-.-. ....++
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~-~~~~l~ 153 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQHKMF-KGLESLKTLMLRSNRITCVGNDSF-IGLSSVRLLSLYDNQITTVAPG-AFDTLH 153 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCGGGG-TTCSSCCEEECTTSCCCCBCTTSS-TTCTTCSEEECTTSCCCCBCTT-TTTTCT
T ss_pred hCCCCCCCEEECCCCccCccCHhHh-cCCcCCCEEECCCCcCCeECHhHc-CCCccCCEEECCCCcCCEECHH-HhcCCC
Confidence 35789999999954 2332222223 368999999999988743211222 4689999999999987653212 235789
Q ss_pred CCcEEEeeceec
Q 035790 101 NMRFLWMSSCRL 112 (198)
Q Consensus 101 ~L~~L~L~~c~i 112 (198)
+|++|+|+++++
T Consensus 154 ~L~~L~L~~N~l 165 (220)
T 2v70_A 154 SLSTLNLLANPF 165 (220)
T ss_dssp TCCEEECCSCCE
T ss_pred CCCEEEecCcCC
Confidence 999999999984
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.20 E-value=7.5e-05 Score=66.72 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=37.4
Q ss_pred CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCc
Q 035790 25 CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMR 103 (198)
Q Consensus 25 c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~ 103 (198)
+++|++|++++ .+++. ..++ .+++|++|+++++..++-. ..++++|++|++++|.+++-. ..++++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM--TGIE-KLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNLD----VTPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCCC--TTGG-GCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC----CTTCTTCC
T ss_pred cCCCCEEEccCCCcccC--hhhc-ccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCceee----cCCCCcCC
Confidence 45666666633 22321 1233 3566666666665543211 234555666666555544321 23455555
Q ss_pred EEEeeceec
Q 035790 104 FLWMSSCRL 112 (198)
Q Consensus 104 ~L~L~~c~i 112 (198)
+|++++|++
T Consensus 110 ~L~L~~N~l 118 (457)
T 3bz5_A 110 YLNCDTNKL 118 (457)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcC
Confidence 555555553
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.19 E-value=0.00019 Score=64.03 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=26.7
Q ss_pred cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
++++|++|++++|.+++.. ..++++|++|++++|+++. +. ...++.|+...+..+
T Consensus 189 ~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSS
T ss_pred cCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCC
Confidence 3455555555555444321 2345556666666665443 11 224555555555443
No 126
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.16 E-value=8.4e-05 Score=67.29 Aligned_cols=89 Identities=13% Similarity=0.185 Sum_probs=51.0
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
.++++|++|+|++ .+++..-..++ .+++|++|+|+++..+. +... .+++|++|++++|.+++-.+.....++++
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQN--ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEECTTSCCCE--ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred ccCCCccEEECCCCCCCcCCHHHhC-CCCCCCEEECCCCcCCc--cCcc--ccccCCEEECCCCCccccCchHhhcccCc
Confidence 4567777777743 22322122232 46777777777766531 1111 57777777777776654222122456778
Q ss_pred CcEEEeeceecCHHH
Q 035790 102 MRFLWMSSCRLTRQG 116 (198)
Q Consensus 102 L~~L~L~~c~iTd~g 116 (198)
|++|++++++++..+
T Consensus 148 L~~L~L~~n~l~~~~ 162 (562)
T 3a79_B 148 LTFLGLSAAKFRQLD 162 (562)
T ss_dssp CCEEEEECSBCCTTT
T ss_pred ccEEecCCCccccCc
Confidence 888888887766543
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.16 E-value=2.7e-05 Score=61.59 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=69.3
Q ss_pred CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790 26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF 104 (198)
Q Consensus 26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~ 104 (198)
++|++|++++ .++.-. ..+ ..+++|+.|+|+++..+.-.-..+ .++++|++|+|++|.++.-.-.. ...+++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~-~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~~~-f~~l~~L~~ 106 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KEL-SNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNRLRCIPPRT-FDGLKSLRL 106 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGG-GGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCE
T ss_pred CCCCEEECCCCcCchhH-HHh-hcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCccCEeCHHH-hCCCCCCCE
Confidence 5899999954 233211 233 368999999999988743221222 46899999999999776432212 357899999
Q ss_pred EEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
|+|++|+++.-.-.. ...+++|+...+..+
T Consensus 107 L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 107 LSLHGNDISVVPEGA-FNDLSALSHLAIGAN 136 (193)
T ss_dssp EECCSSCCCBCCTTT-TTTCTTCCEEECCSS
T ss_pred EECCCCCCCeeChhh-hhcCccccEEEeCCC
Confidence 999999865321111 235778887777765
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.16 E-value=1.9e-05 Score=60.84 Aligned_cols=88 Identities=11% Similarity=0.158 Sum_probs=55.2
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN 101 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~ 101 (198)
..+++|++|++++ .++.-.-..+ ..+++|++|+++++..+...- ....++++|+.|++++|.++.-. ..+...+++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~ 125 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVF-DKLTKLTILYLHENKLQSLPN-GVFDKLTQLKELALDTNQLKSVP-DGIFDRLTS 125 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTT
T ss_pred cCcccccEEECCCCcceEeChhHc-cCCCccCEEECCCCCccccCH-HHhhCCcccCEEECcCCcceEeC-HHHhcCCcc
Confidence 5678888888854 2232111112 257888899888887632111 12246788899999888765322 122356888
Q ss_pred CcEEEeeceecC
Q 035790 102 MRFLWMSSCRLT 113 (198)
Q Consensus 102 L~~L~L~~c~iT 113 (198)
|++|++++|+++
T Consensus 126 L~~L~l~~N~~~ 137 (177)
T 2o6r_A 126 LQKIWLHTNPWD 137 (177)
T ss_dssp CCEEECCSSCBC
T ss_pred cCEEEecCCCee
Confidence 889999888843
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.11 E-value=9.5e-06 Score=63.90 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=56.2
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
+..+++|++|+|++ .++...-..++ ..++|++|+|+++..+...-.. ..++++|++|++++|.++...-. ....++
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~ 126 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISNKM-FLGLHQLKTLNLYDNQISCVMPG-SFEHLN 126 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEECSSS-STTCTTCCEEECCSSCCCEECTT-SSTTCT
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCCeeCHH-HhhcCC
Confidence 35678888888854 23332112233 4688888888888763221111 24578888888888877643211 235678
Q ss_pred CCcEEEeeceecC
Q 035790 101 NMRFLWMSSCRLT 113 (198)
Q Consensus 101 ~L~~L~L~~c~iT 113 (198)
+|++|+|+++.++
T Consensus 127 ~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 127 SLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEeCCCCcc
Confidence 8888888888754
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.07 E-value=4.3e-05 Score=65.78 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=71.7
Q ss_pred hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790 24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM 102 (198)
Q Consensus 24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L 102 (198)
.+++|++|+|++ .++.-.-..+. .+++|++|+|+++..+.-.-. ...++++|+.|+|++|.|+.-.-. ....+++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L 138 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQL 138 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTT-TTTTCTTC
T ss_pred cccccCEEECCCCcCCccChhhcc-CCCCCCEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCcccEECHH-HhCCcccC
Confidence 789999999954 33332212233 579999999999877422111 235689999999999987653211 24678999
Q ss_pred cEEEeeceecCHHHHHHHH--HhCCCCcEEEecCC
Q 035790 103 RFLWMSSCRLTRQGCQEIA--QAMPRLVVEVIRSD 135 (198)
Q Consensus 103 ~~L~L~~c~iTd~gl~~La--~~~p~L~~~~i~~~ 135 (198)
++|+|++|+++.-....+. ..+++|+...+..+
T Consensus 139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 9999999986542211111 35788887777654
No 131
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.05 E-value=2.3e-05 Score=65.75 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=52.1
Q ss_pred hcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCC
Q 035790 47 KYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPR 126 (198)
Q Consensus 47 ~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~ 126 (198)
..+++|++|+++++..+.-.... ..++++|++|++++|.++.-. ..+...+++|+.|+|++|+++.-.- .+...+++
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~~~-~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~ 173 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPLGA-LRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPA-GLLNGLEN 173 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCSST-TTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTT
T ss_pred ccCCCCCEEECCCCcCcccCHHH-HcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCccCH-HHhcCcCC
Confidence 35678888888887663211111 245788888888888665321 1123467888888888887552111 11234677
Q ss_pred CcEEEecCC
Q 035790 127 LVVEVIRSD 135 (198)
Q Consensus 127 L~~~~i~~~ 135 (198)
|+...+..+
T Consensus 174 L~~L~L~~N 182 (290)
T 1p9a_G 174 LDTLLLQEN 182 (290)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 777776654
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.03 E-value=6.6e-05 Score=59.30 Aligned_cols=88 Identities=13% Similarity=0.149 Sum_probs=61.3
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
+.++++|++|+|++ .++.-.-..+. .+++|++|+|+++..+.-.-..+ .++++|+.|+|++|.++.-.- .....++
T Consensus 50 ~~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~ 126 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNRLRCIPPRTF-DGLKSLRLLSLHGNDISVVPE-GAFNDLS 126 (193)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECCSSCCCBCCT-TTTTTCT
T ss_pred hhcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCCccCEeCHHHh-CCCCCCCEEECCCCCCCeeCh-hhhhcCc
Confidence 46789999999954 33432212233 57999999999988743221222 468999999999997763221 1235789
Q ss_pred CCcEEEeeceec
Q 035790 101 NMRFLWMSSCRL 112 (198)
Q Consensus 101 ~L~~L~L~~c~i 112 (198)
+|++|+|+++++
T Consensus 127 ~L~~L~L~~N~~ 138 (193)
T 2wfh_A 127 ALSHLAIGANPL 138 (193)
T ss_dssp TCCEEECCSSCE
T ss_pred cccEEEeCCCCe
Confidence 999999999983
No 133
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.01 E-value=3.9e-05 Score=64.78 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=59.5
Q ss_pred CCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEE
Q 035790 27 KLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFL 105 (198)
Q Consensus 27 ~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L 105 (198)
+|++|++++ .+++- . ....++|++|+++++..++.....+ .++++|++|++++|.+++..-.. ...+++|++|
T Consensus 173 ~L~~L~l~~n~l~~l--~--~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L 246 (332)
T 2ft3_A 173 KLNYLRISEAKLTGI--P--KDLPETLNELHLDHNKIQAIELEDL-LRYSKLYRLGLGHNQIRMIENGS-LSFLPTLREL 246 (332)
T ss_dssp CCSCCBCCSSBCSSC--C--SSSCSSCSCCBCCSSCCCCCCTTSS-TTCTTCSCCBCCSSCCCCCCTTG-GGGCTTCCEE
T ss_pred ccCEEECcCCCCCcc--C--ccccCCCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCCcCChhH-hhCCCCCCEE
Confidence 777787743 22320 0 0123678888888776643322222 35778888888888665532212 3567788888
Q ss_pred EeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 106 WMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 106 ~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
++++|+++. +..-...+++|+...+..+
T Consensus 247 ~L~~N~l~~--lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 247 HLDNNKLSR--VPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp ECCSSCCCB--CCTTGGGCTTCCEEECCSS
T ss_pred ECCCCcCee--cChhhhcCccCCEEECCCC
Confidence 888887552 1111245777777777665
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.94 E-value=8.8e-05 Score=57.30 Aligned_cols=38 Identities=8% Similarity=0.154 Sum_probs=16.2
Q ss_pred cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790 73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~ 111 (198)
++++|++|+|++|.++.-.- .+..++++|++|+|++++
T Consensus 52 ~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 52 RLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCc
Confidence 34455555555554332110 111344555555555554
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.92 E-value=9.3e-05 Score=57.55 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=15.0
Q ss_pred CCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790 74 CPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 74 C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~ 111 (198)
+++|++|+|++|.++.-- ..+..++++|++|+|++|+
T Consensus 56 l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 56 LVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp CTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCc
Confidence 444555555544433210 0011334445555555444
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.91 E-value=2.9e-05 Score=73.60 Aligned_cols=106 Identities=10% Similarity=0.090 Sum_probs=66.9
Q ss_pred HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
...+++|+.|+|++ .++. .-..+. .+++|++|+|+++..+ .+-.-..++++|+.|+|++|.|+ .+-....+++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~-l~~~~~-~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~ 293 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN-ISANIF-KYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCF 293 (727)
T ss_dssp --CCCCCCEEECTTSCCSC-CCGGGG-GCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGT
T ss_pred hccCCCCcEEECCCCCCCC-CChhhc-CCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCC
Confidence 45678888898854 2221 001122 5788999999888764 12111256889999999998776 2222246788
Q ss_pred CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
+|++|+|++|.++. +..-...+++|+.+.+..+
T Consensus 294 ~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 294 QLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp TCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTS
T ss_pred CCCEEECCCCCCCc--cChhhhcCCCccEEeCCCC
Confidence 89999999988542 1111235778887777765
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.88 E-value=0.00021 Score=60.38 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=18.1
Q ss_pred CCceeEecCCCCHHHHHHHHhcCCCCcEEEeecc
Q 035790 27 KLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60 (198)
Q Consensus 27 ~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c 60 (198)
+|++|.++|.+....+..+....++|+.|+|+.+
T Consensus 26 ~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n 59 (329)
T 3sb4_A 26 SITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNA 59 (329)
T ss_dssp HCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEE
T ss_pred ceeEEEEeccccHHHHHHHHHhhccCeEEecCcc
Confidence 4555555554455555555544555555555544
No 138
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.73 E-value=0.00048 Score=64.32 Aligned_cols=97 Identities=13% Similarity=0.014 Sum_probs=60.4
Q ss_pred CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790 49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV 128 (198)
Q Consensus 49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~ 128 (198)
.++|+.|++++|..+. +...+++|++|++++|.|+. +...+++|++|+|++|+++. +..-...+++|+
T Consensus 220 ~~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N~L~~--lp~~l~~l~~L~ 287 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLTR--LPESLIHLSSET 287 (622)
T ss_dssp CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCCS--CCGGGGGSCTTC
T ss_pred CCCCCEEEccCCccCc-----CCCCCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCCCCCc--CCHHHhhccccC
Confidence 3677777777776533 12567888888888886652 22267889999999988652 222234688888
Q ss_pred EEEecCCCC-chhHhHHHHHhHhhhccCCC
Q 035790 129 VEVIRSDDE-EETDNYVETLYMYRSLEGPR 157 (198)
Q Consensus 129 ~~~i~~~~~-~~~~~~~~~~~~y~sl~g~r 157 (198)
...+..+.- ......+..+.......||.
T Consensus 288 ~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~ 317 (622)
T 3g06_A 288 TVNLEGNPLSERTLQALREITSAPGYSGPI 317 (622)
T ss_dssp EEECCSCCCCHHHHHHHHHHHHSTTCCSCE
T ss_pred EEEecCCCCCCcCHHHHHhcccccccCCCc
Confidence 888877632 22233445555544555554
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.66 E-value=0.00015 Score=68.56 Aligned_cols=85 Identities=24% Similarity=0.231 Sum_probs=61.5
Q ss_pred hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790 24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM 102 (198)
Q Consensus 24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L 102 (198)
.+++|++|+|++ .++ ..-..|+ .+++|+.|+|+++..+ .+-.-..++++|+.|+|++|.|+. +-....++++|
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L 318 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNL 318 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSCCCC--CCSSTTSCTTC
T ss_pred CCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCCCCc--cChhhhcCCCc
Confidence 689999999955 334 1112243 6899999999999874 121112568999999999997762 22224689999
Q ss_pred cEEEeeceecCH
Q 035790 103 RFLWMSSCRLTR 114 (198)
Q Consensus 103 ~~L~L~~c~iTd 114 (198)
++|+|++|+++.
T Consensus 319 ~~L~L~~N~l~~ 330 (727)
T 4b8c_D 319 QFLGVEGNPLEK 330 (727)
T ss_dssp CCEECTTSCCCS
T ss_pred cEEeCCCCccCC
Confidence 999999999763
No 140
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.64 E-value=4.3e-05 Score=61.51 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=25.5
Q ss_pred cCCCCcEEEeec-cCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCc---EEEeece
Q 035790 48 YGKLIRTLSVAF-AGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMR---FLWMSSC 110 (198)
Q Consensus 48 ~~~~L~~L~L~~-c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~---~L~L~~c 110 (198)
.+++|++|++++ +..+.-.-.. ..++++|++|++++|.++. +.. ...+++|+ +|++++|
T Consensus 78 ~l~~L~~L~l~~~n~l~~i~~~~-f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTYIDPDA-LKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp SCTTCCEEEEEEETTCCEECTTS-EECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESC
T ss_pred CCcCCcEEECCCCCCeeEcCHHH-hCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCC
Confidence 345555555554 2222111111 1245555555555554432 111 23444444 5555555
No 141
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.63 E-value=0.00015 Score=61.17 Aligned_cols=106 Identities=9% Similarity=0.129 Sum_probs=70.1
Q ss_pred CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790 26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF 104 (198)
Q Consensus 26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~ 104 (198)
++|++|++++ .+++.....+. .+++|+.|+++++..++..-..+ .++++|++|++++|.++. +.....++++|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLSR--VPAGLPDLKLLQV 268 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCCB--CCTTGGGCTTCCE
T ss_pred CCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCee--cChhhhcCccCCE
Confidence 6899999954 33443333343 57899999999987643222222 468999999999997763 2222467899999
Q ss_pred EEeeceecCHHHHHHHHHh-----CCCCcEEEecCC
Q 035790 105 LWMSSCRLTRQGCQEIAQA-----MPRLVVEVIRSD 135 (198)
Q Consensus 105 L~L~~c~iTd~gl~~La~~-----~p~L~~~~i~~~ 135 (198)
|++++|+++..+...+... .+.|+...+..+
T Consensus 269 L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp EECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred EECCCCCCCccChhHccccccccccccccceEeecC
Confidence 9999998776554444322 355665655554
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.53 E-value=0.00015 Score=61.41 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=61.3
Q ss_pred CCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC--CCChHHHHHHHhcCCCC
Q 035790 25 CRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS--PFGDAALRSGLHHYYNM 102 (198)
Q Consensus 25 c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c--~~tD~~l~~i~~~~~~L 102 (198)
..++..+.+.+.+....+..+..+|++|++|+|..+..+.-+-.++ .+|++|++|++.++ .|.+.+ -.+|++|
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF-~~~~~L~~l~l~~ni~~I~~~a----F~~~~~L 275 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF-AQKKYLLKIKLPHNLKTIGQRV----FSNCGRL 275 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT-TTCTTCCEEECCTTCCEECTTT----TTTCTTC
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh-hCCCCCCEEECCcccceehHHH----hhCChhc
Confidence 4455666666656777777777778888888887765422221222 46888888888776 244443 2467778
Q ss_pred c-EEEeece-e-cCHHHHHHHHHhCCCCcEEEecC
Q 035790 103 R-FLWMSSC-R-LTRQGCQEIAQAMPRLVVEVIRS 134 (198)
Q Consensus 103 ~-~L~L~~c-~-iTd~gl~~La~~~p~L~~~~i~~ 134 (198)
+ .|.+... . |.+.++ ..|++|+...+..
T Consensus 276 ~~~l~l~~~l~~I~~~aF----~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 276 AGTLELPASVTAIEFGAF----MGCDNLRYVLATG 306 (329)
T ss_dssp CEEEEECTTCCEECTTTT----TTCTTEEEEEECS
T ss_pred cEEEEEcccceEEchhhh----hCCccCCEEEeCC
Confidence 7 8877662 1 443332 2577776655543
No 143
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.52 E-value=0.0013 Score=61.28 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=61.6
Q ss_pred CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCc
Q 035790 25 CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMR 103 (198)
Q Consensus 25 c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~ 103 (198)
.++|+.|++++ .++. |...+++|+.|+|++|..+. |...+++|+.|++++|.++. +-....++++|+
T Consensus 220 ~~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N~L~~--lp~~l~~l~~L~ 287 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLTR--LPESLIHLSSET 287 (622)
T ss_dssp CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCCS--CCGGGGGSCTTC
T ss_pred CCCCCEEEccCCccCc-----CCCCCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCCCCCc--CCHHHhhccccC
Confidence 36788888854 2332 22567999999999987642 11268999999999998772 222356899999
Q ss_pred EEEeeceecCHHHHHHHH
Q 035790 104 FLWMSSCRLTRQGCQEIA 121 (198)
Q Consensus 104 ~L~L~~c~iTd~gl~~La 121 (198)
.|+|++|+++......+.
T Consensus 288 ~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 288 TVNLEGNPLSERTLQALR 305 (622)
T ss_dssp EEECCSCCCCHHHHHHHH
T ss_pred EEEecCCCCCCcCHHHHH
Confidence 999999998876555444
No 144
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.46 E-value=0.00082 Score=62.18 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=43.1
Q ss_pred HHHHHHH-hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHH
Q 035790 16 EGFGAIV-RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALR 93 (198)
Q Consensus 16 ~g~~ai~-~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~ 93 (198)
.++..+- -.|.+|+.|++++ .++. +.. ..+++|+.|+|+++..+. +. ..+++|+.|++++|.|+. +.
T Consensus 48 ~~~~~l~~C~~~~L~~L~Ls~n~L~~--lp~--~l~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~--ip 116 (571)
T 3cvr_A 48 EAVSLLKECLINQFSELQLNRLNLSS--LPD--NLPPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST--LP 116 (571)
T ss_dssp HHHHHHHHHHHTTCSEEECCSSCCSC--CCS--CCCTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC--CC
T ss_pred chhhhccccccCCccEEEeCCCCCCc--cCH--hHcCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC--cc
Confidence 3455442 2345888888844 2232 110 013667777777766531 11 346677777777665543 11
Q ss_pred HHHhcCCCCcEEEeeceecC
Q 035790 94 SGLHHYYNMRFLWMSSCRLT 113 (198)
Q Consensus 94 ~i~~~~~~L~~L~L~~c~iT 113 (198)
.+ ..+|++|+|++|+++
T Consensus 117 ~l---~~~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 117 EL---PASLKHLDVDNNQLT 133 (571)
T ss_dssp CC---CTTCCEEECCSSCCS
T ss_pred hh---hcCCCEEECCCCcCC
Confidence 11 115666666666543
No 145
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=96.12 E-value=0.0004 Score=55.72 Aligned_cols=106 Identities=17% Similarity=0.097 Sum_probs=66.0
Q ss_pred hhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCc---eEEecCC-CCChHHHHHHH
Q 035790 23 RNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQ---KLEIRDS-PFGDAALRSGL 96 (198)
Q Consensus 23 ~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~---~L~L~~c-~~tD~~l~~i~ 96 (198)
.++++|++|++++ .++.-.-..+ ..+++|++|+++++..+. +.. ..++++|+ .|++++| .++.-.-.. .
T Consensus 77 ~~l~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~ 151 (239)
T 2xwt_C 77 YNLSKVTHIEIRNTRNLTYIDPDAL-KELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA-F 151 (239)
T ss_dssp ESCTTCCEEEEEEETTCCEECTTSE-ECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT-T
T ss_pred CCCcCCcEEECCCCCCeeEcCHHHh-CCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCccc-c
Confidence 4678888888853 3342211112 257899999999987632 222 34688888 9999999 776432111 3
Q ss_pred hcCCCCc-EEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790 97 HHYYNMR-FLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD 135 (198)
Q Consensus 97 ~~~~~L~-~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~ 135 (198)
.++++|+ +|+++++.++.-.-..+ ..++|+...+..+
T Consensus 152 ~~l~~L~~~L~l~~n~l~~i~~~~~--~~~~L~~L~L~~n 189 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNGFTSVQGYAF--NGTKLDAVYLNKN 189 (239)
T ss_dssp TTTBSSEEEEECCSCCCCEECTTTT--TTCEEEEEECTTC
T ss_pred cchhcceeEEEcCCCCCcccCHhhc--CCCCCCEEEcCCC
Confidence 5788999 99999998553211111 1256666666554
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.02 E-value=0.00051 Score=52.91 Aligned_cols=85 Identities=11% Similarity=0.140 Sum_probs=58.3
Q ss_pred CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790 26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF 104 (198)
Q Consensus 26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~ 104 (198)
++|++|+|++ .++.-.-..++ ..++|++|+|+++..+.--- .+..++++|+.|+|++|.|+.-.- ....++++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCE
Confidence 7899999954 22322112233 57899999999987742111 123578999999999997763221 12457899999
Q ss_pred EEeeceecC
Q 035790 105 LWMSSCRLT 113 (198)
Q Consensus 105 L~L~~c~iT 113 (198)
|+|++++++
T Consensus 107 L~L~~N~~~ 115 (170)
T 3g39_A 107 IWLLNNPWD 115 (170)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCCC
Confidence 999999854
No 147
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=95.91 E-value=0.0028 Score=58.57 Aligned_cols=35 Identities=9% Similarity=-0.041 Sum_probs=17.1
Q ss_pred cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceec
Q 035790 73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL 112 (198)
Q Consensus 73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~i 112 (198)
.+++|+.|++++|.++. +...+++|++|+|++|.+
T Consensus 138 ~l~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 138 LPALLEYINADNNQLTM-----LPELPTSLEVLSVRNNQL 172 (571)
T ss_dssp CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCC
T ss_pred cCccccEEeCCCCccCc-----CCCcCCCcCEEECCCCCC
Confidence 34555555555554432 111345555555555553
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.89 E-value=0.00063 Score=52.74 Aligned_cols=85 Identities=12% Similarity=0.158 Sum_probs=58.2
Q ss_pred CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790 26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF 104 (198)
Q Consensus 26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~ 104 (198)
++|++|+|++ .++.-.-..++ .+++|+.|+|+++..+.-- ..+..++++|+.|+|++|.|+.-- .....++++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccCHHHhc-CCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeC-HHHhccccCCCE
Confidence 7899999954 23322112233 5799999999998774211 112356899999999999776321 112457899999
Q ss_pred EEeeceecC
Q 035790 105 LWMSSCRLT 113 (198)
Q Consensus 105 L~L~~c~iT 113 (198)
|+|++++++
T Consensus 110 L~L~~N~~~ 118 (174)
T 2r9u_A 110 IYLYNNPWD 118 (174)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCcc
Confidence 999999854
No 149
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=95.61 E-value=0.0057 Score=54.36 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=32.2
Q ss_pred CCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcE
Q 035790 50 KLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVV 129 (198)
Q Consensus 50 ~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~ 129 (198)
++|++|+++++..+. +..+ .++++|+.|++++|.++. +....++|++|++++|.++. +..+ ..+++|+.
T Consensus 173 ~~L~~L~L~~n~l~~--l~~~-~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~n~l~~--lp~~-~~l~~L~~ 241 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEE--LPEL-QNLPFLTAIYADNNSLKK-----LPDLPLSLESIVAGNNILEE--LPEL-QNLPFLTT 241 (454)
T ss_dssp TTCCEEECCSSCCSS--CCCC-TTCTTCCEEECCSSCCSS-----CCCCCTTCCEEECCSSCCSS--CCCC-TTCTTCCE
T ss_pred ccccEEECcCCcCCc--Cccc-cCCCCCCEEECCCCcCCc-----CCCCcCcccEEECcCCcCCc--cccc-CCCCCCCE
Confidence 355555555554421 1111 345555555555554432 11122355555555555331 1111 24455555
Q ss_pred EEecC
Q 035790 130 EVIRS 134 (198)
Q Consensus 130 ~~i~~ 134 (198)
..+..
T Consensus 242 L~l~~ 246 (454)
T 1jl5_A 242 IYADN 246 (454)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 55444
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.39 E-value=0.0016 Score=54.99 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=46.5
Q ss_pred hhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790 23 RNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY 100 (198)
Q Consensus 23 ~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~ 100 (198)
..+++|++|+|++ .++.-.-..++ .+++|+.|+|+++..+.--- ....++++|+.|+|++|.|+.-- ..+...++
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~ 104 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALESLS-WKTVQGLS 104 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSCCSCCC-STTTCSCC
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCCCccceeC-HHHcccCC
Confidence 4456778887752 33321111122 46778888887776532110 11245777888888877654211 01112233
Q ss_pred CCcEEEeeceec
Q 035790 101 NMRFLWMSSCRL 112 (198)
Q Consensus 101 ~L~~L~L~~c~i 112 (198)
|+.|+|.++.+
T Consensus 105 -L~~l~l~~N~~ 115 (347)
T 2ifg_A 105 -LQELVLSGNPL 115 (347)
T ss_dssp -CCEEECCSSCC
T ss_pred -ceEEEeeCCCc
Confidence 78888877773
No 151
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=94.76 E-value=0.011 Score=52.55 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=7.6
Q ss_pred cCCCCceEEecCCCC
Q 035790 73 GCPKLQKLEIRDSPF 87 (198)
Q Consensus 73 ~C~~L~~L~L~~c~~ 87 (198)
++++|++|++++|.+
T Consensus 235 ~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 235 NLPFLTTIYADNNLL 249 (454)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCCcC
Confidence 355555555555543
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.71 E-value=0.007 Score=50.96 Aligned_cols=84 Identities=19% Similarity=0.158 Sum_probs=54.0
Q ss_pred cCCCCcEEEeec-cCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCC
Q 035790 48 YGKLIRTLSVAF-AGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPR 126 (198)
Q Consensus 48 ~~~~L~~L~L~~-c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~ 126 (198)
..++|+.|+|++ +..+.---. ...++++|+.|+|++|.|+.-- .....++++|++|+|++|+++.--- .+....+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~- 104 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESLSW-KTVQGLS- 104 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCCCS-TTTCSCC-
T ss_pred CCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccceeCH-HHcccCC-
Confidence 567899999985 665321111 1357999999999999876422 1123689999999999999653110 0111222
Q ss_pred CcEEEecCC
Q 035790 127 LVVEVIRSD 135 (198)
Q Consensus 127 L~~~~i~~~ 135 (198)
|+...+..+
T Consensus 105 L~~l~l~~N 113 (347)
T 2ifg_A 105 LQELVLSGN 113 (347)
T ss_dssp CCEEECCSS
T ss_pred ceEEEeeCC
Confidence 776666654
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.01 E-value=0.012 Score=51.68 Aligned_cols=79 Identities=11% Similarity=-0.036 Sum_probs=35.9
Q ss_pred hcCCCCcEEEeeceecC--------HHHHHHHHHhCCCCcEEEecCCCCchhHhHHHHHhHhhhccCCCCCCCCcceee-
Q 035790 97 HHYYNMRFLWMSSCRLT--------RQGCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL- 167 (198)
Q Consensus 97 ~~~~~L~~L~L~~c~iT--------d~gl~~La~~~p~L~~~~i~~~~~~~~~~~~~~~~~y~sl~g~r~d~p~~v~~l- 167 (198)
.+|++|+++++.++.++ +.++ ..|++|+...++..-.......|..|....++.- |..|..|
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF----~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~l-----p~~l~~I~ 338 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCL----EGCPKLARFEIPESIRILGQGLLGGNRKVTQLTI-----PANVTQIN 338 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTT----TTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEE-----CTTCCEEC
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHh----hCCccCCeEEeCCceEEEhhhhhcCCCCccEEEE-----CccccEEc
Confidence 45666666666654322 1111 2455555444442201222223444444333322 3334444
Q ss_pred ---cccCCcccccccccCCCh
Q 035790 168 ---RIIKPKLMLVQIKFAEPS 185 (198)
Q Consensus 168 ---~~~~~~~~~l~~~~~~~~ 185 (198)
+-.| +|+.+.|+..+|.
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCC
T ss_pred HHhCCCC-CCCEEEEcCCCCc
Confidence 3345 7777777665553
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.18 E-value=0.21 Score=42.92 Aligned_cols=101 Identities=10% Similarity=0.106 Sum_probs=55.5
Q ss_pred hhCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC--CCChHHHHHHHhcCC
Q 035790 23 RNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS--PFGDAALRSGLHHYY 100 (198)
Q Consensus 23 ~~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c--~~tD~~l~~i~~~~~ 100 (198)
.+|.+|+.+.+...++.-+- .....|++|+.+.+...-. .-|-.++ .+|.+|++++|..+ .|.+.+. .+|+
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~-~aF~~c~~L~~i~l~~~i~-~I~~~aF-~~c~~L~~i~lp~~v~~I~~~aF----~~C~ 334 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGT-GAFMNCPALQDIEFSSRIT-ELPESVF-AGCISLKSIDIPEGITQILDDAF----AGCE 334 (394)
T ss_dssp TTCSSCCEEECCTTCCEECT-TTTTTCTTCCEEECCTTCC-EECTTTT-TTCTTCCEEECCTTCCEECTTTT----TTCT
T ss_pred eecccccEEecccccceecC-cccccccccccccCCCccc-ccCceee-cCCCCcCEEEeCCcccEehHhHh----hCCC
Confidence 57888888888432221110 1112577888877753221 1111122 46788888888665 3555443 4677
Q ss_pred CCcEEEeece-e-cCHHHHHHHHHhCCCCcEEEecC
Q 035790 101 NMRFLWMSSC-R-LTRQGCQEIAQAMPRLVVEVIRS 134 (198)
Q Consensus 101 ~L~~L~L~~c-~-iTd~gl~~La~~~p~L~~~~i~~ 134 (198)
+|+++.|-.. . |.+.+. ..|++|+...+..
T Consensus 335 ~L~~i~ip~sv~~I~~~aF----~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 335 QLERIAIPSSVTKIPESAF----SNCTALNNIEYSG 366 (394)
T ss_dssp TCCEEEECTTCCBCCGGGG----TTCTTCCEEEESS
T ss_pred CCCEEEECcccCEEhHhHh----hCCCCCCEEEECC
Confidence 8888877543 2 444332 3677777555554
No 155
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=88.69 E-value=0.023 Score=48.24 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=44.3
Q ss_pred CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEe-cCCCCChHHHHHHHhcCCCC
Q 035790 26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEI-RDSPFGDAALRSGLHHYYNM 102 (198)
Q Consensus 26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L-~~c~~tD~~l~~i~~~~~~L 102 (198)
++|++|+|++ .++.-.-..+ ..+++|++|+|+++.. +.-.-. ...++++|+++.+ ..+.++.-.- ....++++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSS-TTCTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTC
T ss_pred CCCCEEEccCCcCCCcCHHHH-cCCCCCCEEECcCCCCCCccChh-HhhcchhhhhhhcccCCcccccCc-hhhhhcccc
Confidence 5788888854 2231100111 2578889999888764 210001 1235666665443 3344432110 113567778
Q ss_pred cEEEeeceec
Q 035790 103 RFLWMSSCRL 112 (198)
Q Consensus 103 ~~L~L~~c~i 112 (198)
++|++++|++
T Consensus 107 ~~L~l~~n~l 116 (350)
T 4ay9_X 107 QYLLISNTGI 116 (350)
T ss_dssp CEEEEEEECC
T ss_pred cccccccccc
Confidence 8888887764
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=87.00 E-value=0.088 Score=46.09 Aligned_cols=32 Identities=34% Similarity=0.586 Sum_probs=14.8
Q ss_pred cCCCCceEEecCC--CCChHHHHHHHhcCCCCcEEEee
Q 035790 73 GCPKLQKLEIRDS--PFGDAALRSGLHHYYNMRFLWMS 108 (198)
Q Consensus 73 ~C~~L~~L~L~~c--~~tD~~l~~i~~~~~~L~~L~L~ 108 (198)
+|++|+.++|.+. .|.+.++ .+|++|++|.|.
T Consensus 298 ~c~~L~~l~l~~~i~~I~~~aF----~~c~~L~~l~lp 331 (401)
T 4fdw_A 298 GCPKLARFEIPESIRILGQGLL----GGNRKVTQLTIP 331 (401)
T ss_dssp TCTTCCEECCCTTCCEECTTTT----TTCCSCCEEEEC
T ss_pred CCccCCeEEeCCceEEEhhhhh----cCCCCccEEEEC
Confidence 4555555555533 1333221 345555555553
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.77 E-value=0.42 Score=40.92 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=17.2
Q ss_pred cCCCCceEEecCC--CCChHHHHHHHhcCCCCcEEEeece
Q 035790 73 GCPKLQKLEIRDS--PFGDAALRSGLHHYYNMRFLWMSSC 110 (198)
Q Consensus 73 ~C~~L~~L~L~~c--~~tD~~l~~i~~~~~~L~~L~L~~c 110 (198)
+|.+|+++.|..+ .|.+.++ .+|++|+++.+.+.
T Consensus 332 ~C~~L~~i~ip~sv~~I~~~aF----~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 332 GCEQLERIAIPSSVTKIPESAF----SNCTALNNIEYSGS 367 (394)
T ss_dssp TCTTCCEEEECTTCCBCCGGGG----TTCTTCCEEEESSC
T ss_pred CCCCCCEEEECcccCEEhHhHh----hCCCCCCEEEECCc
Confidence 4556666655443 2343332 34556666655554
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=81.34 E-value=0.2 Score=42.47 Aligned_cols=101 Identities=11% Similarity=0.116 Sum_probs=63.4
Q ss_pred hhCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCC---CChHHHHHHHhcC
Q 035790 23 RNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSP---FGDAALRSGLHHY 99 (198)
Q Consensus 23 ~~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~---~tD~~l~~i~~~~ 99 (198)
.+|.+|+.+.+...++.-+-. ....|.+|+.+.+...-. .-|-.+ -.+|++|+++.+.++. |.+.+ -.+|
T Consensus 237 ~~~~~L~~i~lp~~v~~I~~~-aF~~~~~l~~i~l~~~i~-~i~~~a-F~~c~~L~~i~l~~~~i~~I~~~a----F~~c 309 (379)
T 4h09_A 237 YGMKALDEIAIPKNVTSIGSF-LLQNCTALKTLNFYAKVK-TVPYLL-CSGCSNLTKVVMDNSAIETLEPRV----FMDC 309 (379)
T ss_dssp TTCSSCCEEEECTTCCEECTT-TTTTCTTCCEEEECCCCS-EECTTT-TTTCTTCCEEEECCTTCCEECTTT----TTTC
T ss_pred cCCccceEEEcCCCccEeCcc-ccceeehhccccccccce-eccccc-cccccccccccccccccceehhhh----hcCC
Confidence 579999999995433321111 223688999998864322 112122 2579999999998764 44543 3579
Q ss_pred CCCcEEEeec-ee-cCHHHHHHHHHhCCCCcEEEecC
Q 035790 100 YNMRFLWMSS-CR-LTRQGCQEIAQAMPRLVVEVIRS 134 (198)
Q Consensus 100 ~~L~~L~L~~-c~-iTd~gl~~La~~~p~L~~~~i~~ 134 (198)
++|+++.|.. .. |.+.+. ..|.+|+...++.
T Consensus 310 ~~L~~i~lp~~l~~I~~~aF----~~C~~L~~i~ip~ 342 (379)
T 4h09_A 310 VKLSSVTLPTALKTIQVYAF----KNCKALSTISYPK 342 (379)
T ss_dssp TTCCEEECCTTCCEECTTTT----TTCTTCCCCCCCT
T ss_pred CCCCEEEcCccccEEHHHHh----hCCCCCCEEEECC
Confidence 9999999954 33 665443 3678887555543
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=78.07 E-value=0.64 Score=39.79 Aligned_cols=95 Identities=11% Similarity=0.176 Sum_probs=45.9
Q ss_pred hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC--ChHHHHHHHhcCCCCceEEecCC--CCChHHHHHHHh
Q 035790 23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD--SDMGLKYVLEGCPKLQKLEIRDS--PFGDAALRSGLH 97 (198)
Q Consensus 23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~--tD~gl~~i~~~C~~L~~L~L~~c--~~tD~~l~~i~~ 97 (198)
..|.+|+.+.+.. .+.+.. ...|.+|+.+.+...-. .+.. -.+|.+|++++|... .|.+.++ .
T Consensus 273 ~~~~~l~~~~~~~~~i~~~~----F~~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~aF----~ 340 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVIVPEKT----FYGCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYLVEEIGKRSF----R 340 (394)
T ss_dssp TTCTTCCEEEECSSEECTTT----TTTCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTTCCEECTTTT----T
T ss_pred ccccccceeccCceeecccc----ccccccccccccccccceechhh----hcCCCCCCEEEeCCcccEEhHHhc----c
Confidence 3566666665532 122221 23566666666643211 1211 135666777666544 2444332 3
Q ss_pred cCCCCcEEEeece-e-cCHHHHHHHHHhCCCCcEEEec
Q 035790 98 HYYNMRFLWMSSC-R-LTRQGCQEIAQAMPRLVVEVIR 133 (198)
Q Consensus 98 ~~~~L~~L~L~~c-~-iTd~gl~~La~~~p~L~~~~i~ 133 (198)
+|++|+++.+... . |.+.+. ..|++|+...++
T Consensus 341 ~c~~L~~i~lp~~l~~I~~~aF----~~C~~L~~i~lp 374 (394)
T 4fs7_A 341 GCTSLSNINFPLSLRKIGANAF----QGCINLKKVELP 374 (394)
T ss_dssp TCTTCCEECCCTTCCEECTTTB----TTCTTCCEEEEE
T ss_pred CCCCCCEEEECccccEehHHHh----hCCCCCCEEEEC
Confidence 5666666666543 1 433322 256666644444
No 160
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=75.63 E-value=0.31 Score=41.04 Aligned_cols=85 Identities=13% Similarity=0.098 Sum_probs=50.0
Q ss_pred CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeec-eecCHHHHHHHHHhCCCC
Q 035790 49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSS-CRLTRQGCQEIAQAMPRL 127 (198)
Q Consensus 49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~-c~iTd~gl~~La~~~p~L 127 (198)
.+++++|+|+++..+.-.-.. ..++++|++|+|++|.+.+.-=.....++++|+.+.+.+ ++++.-.-.. ...+++|
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~-f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~-f~~l~~L 106 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA-FQNLPNL 106 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTS-STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS-BCCCTTC
T ss_pred CCCCCEEEccCCcCCCcCHHH-HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh-hhhcccc
Confidence 468999999998774211111 257999999999999763310001135678877755544 4443211011 1356778
Q ss_pred cEEEecCC
Q 035790 128 VVEVIRSD 135 (198)
Q Consensus 128 ~~~~i~~~ 135 (198)
+...+..+
T Consensus 107 ~~L~l~~n 114 (350)
T 4ay9_X 107 QYLLISNT 114 (350)
T ss_dssp CEEEEEEE
T ss_pred cccccccc
Confidence 76666543
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=71.03 E-value=0.29 Score=41.93 Aligned_cols=79 Identities=16% Similarity=0.368 Sum_probs=53.4
Q ss_pred HhhCCCCceeEecCC---CCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC--CCChHHHHHHH
Q 035790 22 VRNCRKLTRLAVSGL---LTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS--PFGDAALRSGL 96 (198)
Q Consensus 22 ~~~c~~L~~L~L~g~---lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c--~~tD~~l~~i~ 96 (198)
...|.+|+.+.+... +.+.++ ..|.+|+.+.|...-. .-|-.++ .+|.+|+.+.+..+ .|.+.+ -
T Consensus 293 F~~~~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp~~v~-~I~~~aF-~~c~~L~~i~lp~~l~~I~~~a----F 362 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSVKFIGEEAF----ESCTSLVSIDLPYLVE-EIGKRSF-RGCTSLSNINFPLSLRKIGANA----F 362 (394)
T ss_dssp TTTCTTCCEEEECTTCCEECTTTT----TTCTTCCEECCCTTCC-EECTTTT-TTCTTCCEECCCTTCCEECTTT----B
T ss_pred ccccccccccccccccceechhhh----cCCCCCCEEEeCCccc-EEhHHhc-cCCCCCCEEEECccccEehHHH----h
Confidence 357999999999442 233332 3689999999964322 1111222 57999999999776 356554 3
Q ss_pred hcCCCCcEEEeece
Q 035790 97 HHYYNMRFLWMSSC 110 (198)
Q Consensus 97 ~~~~~L~~L~L~~c 110 (198)
.+|++|+++.+...
T Consensus 363 ~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 363 QGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEEEEEGG
T ss_pred hCCCCCCEEEECCC
Confidence 57999999999754
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=69.04 E-value=1.5 Score=32.02 Aligned_cols=35 Identities=9% Similarity=0.038 Sum_probs=17.4
Q ss_pred CCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790 76 KLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 76 ~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~ 111 (198)
+|++|+|++|.|+.-.- .+...+++|++|+|+++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPP-GLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccCh-hhhhhccccCEEEecCCC
Confidence 46666666664432110 112345566666666655
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=64.37 E-value=2 Score=36.09 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=78.9
Q ss_pred hhCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC--CCChHHHHHHHhcCC
Q 035790 23 RNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS--PFGDAALRSGLHHYY 100 (198)
Q Consensus 23 ~~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c--~~tD~~l~~i~~~~~ 100 (198)
..|.+|+.+.+...++.-+-. ....|.+|+.+.+...-. .-|-.+ ..+|.+|+.+.+... .+.+.+ -.+|+
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~-~f~~~~~L~~i~lp~~v~-~I~~~a-F~~~~~l~~i~l~~~i~~i~~~a----F~~c~ 286 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDG-AFYGMKALDEIAIPKNVT-SIGSFL-LQNCTALKTLNFYAKVKTVPYLL----CSGCS 286 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTT-TTTTCSSCCEEEECTTCC-EECTTT-TTTCTTCCEEEECCCCSEECTTT----TTTCT
T ss_pred ccccccceeeeccceeEEccc-cccCCccceEEEcCCCcc-EeCccc-cceeehhccccccccceeccccc----ccccc
Confidence 468899999884422221111 123689999999865422 111112 357999999999765 244433 35799
Q ss_pred CCcEEEeecee---cCHHHHHHHHHhCCCCcEEEecCCCCchhHhHHHHHhHhhhccCCCCCCCCcceee
Q 035790 101 NMRFLWMSSCR---LTRQGCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167 (198)
Q Consensus 101 ~L~~L~L~~c~---iTd~gl~~La~~~p~L~~~~i~~~~~~~~~~~~~~~~~y~sl~g~r~d~p~~v~~l 167 (198)
+|+++.+..+. |.+.+. ..|.+|+...++..-.......|..|....++. .|+.|..|
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF----~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~-----ip~~v~~I 347 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVF----MDCVKLSSVTLPTALKTIQVYAFKNCKALSTIS-----YPKSITLI 347 (379)
T ss_dssp TCCEEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTTTTTTCTTCCCCC-----CCTTCCEE
T ss_pred ccccccccccccceehhhhh----cCCCCCCEEEcCccccEEHHHHhhCCCCCCEEE-----ECCccCEE
Confidence 99999998754 555433 368899877776431133334566665555553 46667766
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=48.17 E-value=5.1 Score=29.13 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=31.1
Q ss_pred CCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCC-ChHHHHHHH
Q 035790 50 KLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPF-GDAALRSGL 96 (198)
Q Consensus 50 ~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~-tD~~l~~i~ 96 (198)
++|+.|+|+++..+.-.- .+....++|+.|+|++|++ -|-.+.++.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC~l~~l~ 77 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDCRLVPLR 77 (130)
T ss_dssp TTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSGGGHHHH
T ss_pred cCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccCccHHHH
Confidence 489999999987722111 1235688999999999976 455555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.20 E-value=15 Score=25.55 Aligned_cols=36 Identities=8% Similarity=0.165 Sum_probs=28.9
Q ss_pred hcCCCCceEEecCC--CCChHHHHHHHhcCCCCcEEEeecee
Q 035790 72 EGCPKLQKLEIRDS--PFGDAALRSGLHHYYNMRFLWMSSCR 111 (198)
Q Consensus 72 ~~C~~L~~L~L~~c--~~tD~~l~~i~~~~~~L~~L~L~~c~ 111 (198)
.+|.+|+++.|-.. .|.+.++ .+|.+|+.+.+.+-.
T Consensus 17 ~~c~~L~~i~iP~~v~~Ig~~aF----~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 17 AGNTVIREITVQPNIGLLYDGMF----SGCTALEKLILTGED 54 (100)
T ss_dssp TTCTTCCCEEECTTSSCCCTTSS----TTCTTCCCEEECCSC
T ss_pred cCCCCCcEEEcCCchheEcHHHH----hccCCccEEEEcCCC
Confidence 47999999999877 4777764 579999999998754
Done!