Query 035792
Match_columns 856
No_of_seqs 356 out of 1223
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 91.4 0.57 1.9E-05 39.2 7.3 56 75-139 17-73 (76)
2 1wj2_A Probable WRKY transcrip 85.5 1.1 3.9E-05 37.5 5.2 38 94-139 38-76 (78)
3 2rpr_A Flywch-type zinc finger 75.1 3.5 0.00012 35.2 5.0 35 95-140 40-74 (87)
4 3kks_A Integrase, IN; beta-str 64.5 15 0.00052 33.5 7.4 66 269-344 3-68 (152)
5 3hph_A Integrase, IN; protein- 40.7 50 0.0017 32.4 7.1 66 269-344 61-126 (219)
6 3pyi_B Spindle assembly abnorm 38.2 17 0.00057 33.3 2.6 25 817-841 36-61 (170)
7 1cxq_A Avian sarcoma virus int 34.7 1E+02 0.0035 28.4 7.9 70 269-343 12-81 (162)
8 1c0m_A Protein (integrase); HI 33.9 85 0.0029 31.4 7.6 71 269-344 11-81 (238)
9 3l3u_A POL polyprotein; DNA in 33.5 74 0.0025 29.3 6.6 64 269-342 10-73 (163)
10 3pyi_B Spindle assembly abnorm 28.5 32 0.0011 31.4 2.8 26 767-792 36-61 (170)
11 2x78_A Integrase; viral protei 28.4 1.3E+02 0.0046 28.5 7.8 69 269-343 14-83 (200)
12 3hot_A Transposable element ma 26.4 1.1E+02 0.0037 32.2 7.2 59 280-341 185-254 (345)
13 2lju_A Putative oxidoreductase 26.3 59 0.002 28.9 4.0 33 47-83 56-88 (108)
14 2jya_A AGR_C_3324P, uncharacte 22.2 42 0.0014 29.8 2.3 31 49-83 50-80 (106)
15 3av9_A Integrase, IN; protein- 20.9 1.7E+02 0.0057 27.6 6.7 65 269-343 30-94 (183)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=91.43 E-value=0.57 Score=39.19 Aligned_cols=56 Identities=23% Similarity=0.390 Sum_probs=38.9
Q ss_pred CcEEEEcceeccCCCCCeEEEEeecCccccccccccCCcceeEEEEec-CCcEEEEEeecCccCCC
Q 035792 75 GFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNVESCNAVLRIERKD-SEKWTVTKFVEDHNHSM 139 (856)
Q Consensus 75 GF~vr~~~s~r~k~~g~~~~~~f~CsreG~~Rkrr~gCpa~i~v~~~~-~~~W~V~~~~~eHNH~l 139 (856)
||..|+=--...+. ...-+..|.|+. .||||+=.|.+.. +..-.++....+|||++
T Consensus 17 Gy~WRKYGQK~ikg-s~~PRsYYrCt~--------~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 73 (76)
T 2ayd_A 17 GYRWRKYGQKSVKG-SPYPRSYYRCSS--------PGCPVKKHVERSSHDTKLLITTYEGKHDHDM 73 (76)
T ss_dssp SSCEEEEEEECCTT-CSSCEEEEEECS--------TTCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred CchhhhCcccccCC-CCCceeEeEcCC--------CCCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence 66666622211221 122356789984 6999999999875 67788999999999986
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=85.48 E-value=1.1 Score=37.53 Aligned_cols=38 Identities=26% Similarity=0.509 Sum_probs=32.3
Q ss_pred EEEeecCccccccccccCCcceeEEEEec-CCcEEEEEeecCccCCC
Q 035792 94 TWDFACSREVFKRKNVESCNAVLRIERKD-SEKWTVTKFVEDHNHSM 139 (856)
Q Consensus 94 ~~~f~CsreG~~Rkrr~gCpa~i~v~~~~-~~~W~V~~~~~eHNH~l 139 (856)
+..|.|+. .||||+=.|.+.. +..-.++....+|||+.
T Consensus 38 RsYYrCt~--------~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 76 (78)
T 1wj2_A 38 RSYYKCTT--------PGCGVRKHVERAATDPKAVVTTYEGKHNHDL 76 (78)
T ss_dssp EEEEEEEC--------SSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred eEEeecCc--------CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCC
Confidence 56789984 6899999999865 77788889999999985
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=75.07 E-value=3.5 Score=35.24 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=22.8
Q ss_pred EEeecCccccccccccCCcceeEEEEecCCcEEEEEeecCccCCCC
Q 035792 95 WDFACSREVFKRKNVESCNAVLRIERKDSEKWTVTKFVEDHNHSMV 140 (856)
Q Consensus 95 ~~f~CsreG~~Rkrr~gCpa~i~v~~~~~~~W~V~~~~~eHNH~l~ 140 (856)
....|++.. +.+|+|++..... + + .....|||++.
T Consensus 40 ~yWrC~~~~-----~~kCrARi~T~~~--~---~-~~~~~HnH~p~ 74 (87)
T 2rpr_A 40 VYWMCRDQA-----RLGCRSRAITQGH--R---I-MVMRSHCHQPD 74 (87)
T ss_dssp EEEEEGGGT-----TSCCCCEEEEETT--E---E-EECSCCSSCCC
T ss_pred EEEEecCCC-----CCCCCEEEEEcCC--C---E-ECCCCcCCCCc
Confidence 346787532 3589999887642 2 3 25678999753
No 4
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=64.48 E-value=15 Score=33.48 Aligned_cols=66 Identities=8% Similarity=0.096 Sum_probs=48.4
Q ss_pred ceEEecccccCCCCCCccccEEEEeeCCcEEEEEEEeecCCchhhHHHHHHHHHHhcCCCCCeEEecCccHHHHHH
Q 035792 269 DAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVA 344 (856)
Q Consensus 269 dVl~~D~Ty~tnky~~pL~~~vgvn~~g~~~~~g~all~~Et~es~~Wll~~f~~~m~~~~P~~iiTD~d~al~~A 344 (856)
+++.+|.|+..++ +.++.+|..-+.+ +++.+ .+++.+...-+|..+....+ |.+|.||+.....+.
T Consensus 3 ~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s~ 68 (152)
T 3kks_A 3 HLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRYT---VLHLHSDNGPCFTAH 68 (152)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHSH
T ss_pred cEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhHH
Confidence 5778899988433 5677788877655 55554 47888887777777766665 999999999887653
No 5
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=40.69 E-value=50 Score=32.38 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=45.6
Q ss_pred ceEEecccccCCCCCCccccEEEEeeCCcEEEEEEEeecCCchhhHHHHHHHHHHhcCCCCCeEEecCccHHHHHH
Q 035792 269 DAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVA 344 (856)
Q Consensus 269 dVl~~D~Ty~tnky~~pL~~~vgvn~~g~~~~~g~all~~Et~es~~Wll~~f~~~m~~~~P~~iiTD~d~al~~A 344 (856)
+++.+|.|+..++ +.++.+|..-..+ .++. +.+.+.+...-+|..+....+ |.+|.||+.....+.
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhhH
Confidence 4566777765443 5677788877766 4444 566777777767666665555 899999999887644
No 6
>3pyi_B Spindle assembly abnormal protein 6; beta-sandwich, dimer, alpha-beta protein, structural protein cytoplasmic, centriolar; HET: PG4 MES; 2.10A {Caenorhabditis elegans}
Probab=38.22 E-value=17 Score=33.27 Aligned_cols=25 Identities=44% Similarity=0.795 Sum_probs=21.2
Q ss_pred EEecccc-ccCCCcceeEEEEeehhh
Q 035792 817 INLKLQD-TKTTSGEAEVKFQVSRDT 841 (856)
Q Consensus 817 ~~~~~~~-~~~~~~~~~~~~~~~~~~ 841 (856)
++||+-. .--++||+|++|.||||.
T Consensus 36 v~LKI~E~rne~~geKeL~feLSrdd 61 (170)
T 3pyi_B 36 VKLKISEQRNETSGEKELKFEISRSD 61 (170)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEECTT
T ss_pred heeeehhhhccccCCceeEEEeccCC
Confidence 7888877 556679999999999985
No 7
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=34.65 E-value=1e+02 Score=28.36 Aligned_cols=70 Identities=11% Similarity=0.032 Sum_probs=47.5
Q ss_pred ceEEecccccCCCCCCccccEEEEeeCCcEEEEEEEeecCCchhhHHHHHHHHHHhcCCCCCeEEecCccHHHHH
Q 035792 269 DAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQV 343 (856)
Q Consensus 269 dVl~~D~Ty~tnky~~pL~~~vgvn~~g~~~~~g~all~~Et~es~~Wll~~f~~~m~~~~P~~iiTD~d~al~~ 343 (856)
+++.+|.||..... +-.+.++.+|..-..+ +|+.+- +.+.+...-+|+.+....+ .|.+|.||+.....+
T Consensus 12 ~~~~~D~~~~~~~~-g~~yl~~~iD~~Sr~i-~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 12 QIWQTDFTLEPRMA-PRSWLAVTVDTASSAI-VVTQHG-RVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CEEEEEEEECGGGT-TSCEEEEEEETTTCCE-EEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHHS
T ss_pred CEEEeeeeecccCC-CCEEEEEEEEcCCCeE-EEEECC-CccHHHHHHHHHHHHHHHC--CCeEEEeCCchhhhh
Confidence 57788888765432 3355677788776544 556655 7777777666666655554 478999999988754
No 8
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=33.90 E-value=85 Score=31.36 Aligned_cols=71 Identities=11% Similarity=0.051 Sum_probs=49.7
Q ss_pred ceEEecccccCCCCCCccccEEEEeeCCcEEEEEEEeecCCchhhHHHHHHHHHHhcCCCCCeEEecCccHHHHHH
Q 035792 269 DAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQVA 344 (856)
Q Consensus 269 dVl~~D~Ty~tnky~~pL~~~vgvn~~g~~~~~g~all~~Et~es~~Wll~~f~~~m~~~~P~~iiTD~d~al~~A 344 (856)
+++.+|.||.....+ -.+.++.+|..-. .++|+.+- .++.+....+|.......+ .|.+|.||+.....+.
T Consensus 11 ~~w~~D~~~~~~~~g-~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s~ 81 (238)
T 1c0m_A 11 QIWQTDFTLEPRMAP-RSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLG--RPKAIKTDNGSCFTSK 81 (238)
T ss_dssp SEEEEEEEECGGGCS-SCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEEECSCHHHHSH
T ss_pred CEEEEeeccccccCC-CEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhC--CCcEEEECCCCccccH
Confidence 578888887654333 3566777777655 44566665 8888887777777766655 4889999999887543
No 9
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=33.45 E-value=74 Score=29.27 Aligned_cols=64 Identities=8% Similarity=0.051 Sum_probs=45.6
Q ss_pred ceEEecccccCCCCCCccccEEEEeeCCcEEEEEEEeecCCchhhHHHHHHHHHHhcCCCCCeEEecCccHHHH
Q 035792 269 DAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQ 342 (856)
Q Consensus 269 dVl~~D~Ty~tnky~~pL~~~vgvn~~g~~~~~g~all~~Et~es~~Wll~~f~~~m~~~~P~~iiTD~d~al~ 342 (856)
+++.+|.||..++ +.++.+|.....+ +++.+ .+++.+...-+|..+....+ +.+|.||+.....
T Consensus 10 ~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~---~~~i~sD~G~~f~ 73 (163)
T 3l3u_A 10 GIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP---VKTVHTDNGSNFT 73 (163)
T ss_dssp TEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC---CCEEEECCCGGGG
T ss_pred CEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC---CcEEeecChHhhh
Confidence 6788999987643 5777888877755 55555 56677777777776665554 4799999977643
No 10
>3pyi_B Spindle assembly abnormal protein 6; beta-sandwich, dimer, alpha-beta protein, structural protein cytoplasmic, centriolar; HET: PG4 MES; 2.10A {Caenorhabditis elegans}
Probab=28.54 E-value=32 Score=31.44 Aligned_cols=26 Identities=27% Similarity=0.661 Sum_probs=22.2
Q ss_pred EEEEeccCCCCCCCcceEEEEeeccc
Q 035792 767 INLKLQDYGKKPSGETEVQFRLTKTT 792 (856)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (856)
++||+-.-..-++||+|++|.|+||.
T Consensus 36 v~LKI~E~rne~~geKeL~feLSrdd 61 (170)
T 3pyi_B 36 VKLKISEQRNETSGEKELKFEISRSD 61 (170)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEECTT
T ss_pred heeeehhhhccccCCceeEEEeccCC
Confidence 67888776667789999999999997
No 11
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=28.44 E-value=1.3e+02 Score=28.52 Aligned_cols=69 Identities=16% Similarity=0.041 Sum_probs=45.1
Q ss_pred ceEEecc-cccCCCCCCccccEEEEeeCCcEEEEEEEeecCCchhhHHHHHHHHHHhcCCCCCeEEecCccHHHHH
Q 035792 269 DAVIFDT-MYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQV 343 (856)
Q Consensus 269 dVl~~D~-Ty~tnky~~pL~~~vgvn~~g~~~~~g~all~~Et~es~~Wll~~f~~~m~~~~P~~iiTD~d~al~~ 343 (856)
+++.+|. ++.... ++..+.++.+|..-..+ +++.+ .+.+.+...-+|+.+ .....|.+|.||+.....+
T Consensus 14 ~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~~~l~~~---~~~g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 14 DKFFIDYIGPLPPS-QGYLYVLVVVDGMTGFT-WLYPT-KAPSTSATVKSLNVL---TSIAIPRVIHSDQGAAFTS 83 (200)
T ss_dssp SEEEEEEECCCSCB-TTBCEEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHH---TTTCCCSEEEECSCHHHHS
T ss_pred cEEEEEEeCCCccC-CCCeEEEEEEeCCCCcE-EEEEC-CCCCHHHHHHHHHHH---HHhCCCcEEEecCCcceeh
Confidence 5777886 555443 44667778888776654 55555 666766655555433 3335789999999987654
No 12
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=26.43 E-value=1.1e+02 Score=32.22 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=38.2
Q ss_pred CCCCCccccEEEEeeCCcEEEEEEEeec---CCchhhHHHHHHHHHHhc----CC----CCCeEEecCccHHH
Q 035792 280 NQYQVPFAPFTGVNHHGQMVLFGCALLL---DESEASFTWLFRTWLSAM----ND----RPPVSITTDQDRAI 341 (856)
Q Consensus 280 nky~~pL~~~vgvn~~g~~~~~g~all~---~Et~es~~Wll~~f~~~m----~~----~~P~~iiTD~d~al 341 (856)
..++.-+....+++..| ++++.++. .-+.+.|.-+|+.++..+ +. ..+.+|+.|.....
T Consensus 185 ~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~~h 254 (345)
T 3hot_A 185 NRFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSH 254 (345)
T ss_dssp CTTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCTTT
T ss_pred cCcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCCcc
Confidence 34555666666777776 56667765 457788888888775543 22 23568999986643
No 13
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=26.33 E-value=59 Score=28.93 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=25.4
Q ss_pred CCCCCCCCCeeCCHHHHHHHHHHHhhhcCcEEEEcce
Q 035792 47 ESSKPYVGMEFDSEDAAKTFYDAYARRMGFSTHVGPF 83 (856)
Q Consensus 47 ~~~~P~vG~~F~S~eea~~fyn~YA~~~GF~vr~~~s 83 (856)
.+..-.+.+.|+|.|+|.. ||.++|....+...
T Consensus 56 ~D~~~qv~L~F~skE~Aia----yAek~G~~y~V~ep 88 (108)
T 2lju_A 56 HDTKQQVCLSFTTRELAIA----YAVAHKIDYTVLQD 88 (108)
T ss_dssp CCCCCCSCEEESSHHHHHH----HHHHTTCEEEEECS
T ss_pred CCccccceEecCCHHHHHH----HHHHcCCEEEEecC
Confidence 3344567899999999974 78999999887543
No 14
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=22.21 E-value=42 Score=29.76 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=24.2
Q ss_pred CCCCCCCeeCCHHHHHHHHHHHhhhcCcEEEEcce
Q 035792 49 SKPYVGMEFDSEDAAKTFYDAYARRMGFSTHVGPF 83 (856)
Q Consensus 49 ~~P~vG~~F~S~eea~~fyn~YA~~~GF~vr~~~s 83 (856)
..-.+.+.|+|.|+|.. ||.++|....+...
T Consensus 50 ~~~qv~L~F~skE~Aia----yAek~G~~y~V~ep 80 (106)
T 2jya_A 50 MKQQVKLTFETQEQAEA----YAQRKGIEYRVILP 80 (106)
T ss_dssp SEEEEEEEESSHHHHHH----HHHHHTCEEEECCC
T ss_pred ccccceEecCCHHHHHH----HHHHcCCEEEEeCC
Confidence 33456889999999974 78889999888643
No 15
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=20.94 E-value=1.7e+02 Score=27.62 Aligned_cols=65 Identities=8% Similarity=0.039 Sum_probs=38.8
Q ss_pred ceEEecccccCCCCCCccccEEEEeeCCcEEEEEEEeecCCchhhHHHHHHHHHHhcCCCCCeEEecCccHHHHH
Q 035792 269 DAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESEASFTWLFRTWLSAMNDRPPVSITTDQDRAIQV 343 (856)
Q Consensus 269 dVl~~D~Ty~tnky~~pL~~~vgvn~~g~~~~~g~all~~Et~es~~Wll~~f~~~m~~~~P~~iiTD~d~al~~ 343 (856)
+++.+|.|+..++| .++.+|..-..+ +++.+ .+.+.....-++..+....+ +.+|.||+.....+
T Consensus 30 ~~w~~D~~~~~g~~-----~l~~vD~~Sr~~-~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~i~sDnG~ef~s 94 (183)
T 3av9_A 30 GIWQLDCTHLEGKV-----ILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP---VKTVHTDNGSNFTS 94 (183)
T ss_dssp TEEEEEEEEETTEE-----EEEEEETTTTEE-EEEEE-SSCCHHHHHHHHHHHHHHSC---CCEEECSSHHHHHC
T ss_pred CEEEEeccccCCcE-----EEEEEECCCCCE-EEEEe-CCccchHHHHHHHHHHHHcC---CcEEEecCchhcch
Confidence 56677777763322 455566665554 66654 45565555544444444432 48999999887654
Done!