Query 035795
Match_columns 164
No_of_seqs 109 out of 1114
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qtq_A GLNRS, protein (glutami 100.0 7.5E-40 2.6E-44 298.5 11.8 164 1-164 224-480 (553)
2 2hz7_A Glutaminyl-tRNA synthet 100.0 1.3E-38 4.4E-43 301.2 13.3 163 1-164 264-530 (851)
3 3aii_A Glutamyl-tRNA synthetas 100.0 3.5E-36 1.2E-40 274.4 9.7 148 1-151 287-498 (553)
4 1j09_A Glutamyl-tRNA synthetas 98.4 1.3E-07 4.5E-12 84.7 2.9 60 1-66 200-274 (468)
5 4g6z_A Glutamate-tRNA ligase; 98.3 1.6E-07 5.5E-12 84.7 2.5 62 1-66 221-295 (490)
6 3afh_A Glutamyl-tRNA synthetas 98.1 1.1E-06 3.7E-11 79.2 2.6 60 1-66 212-286 (488)
7 2cfo_A Glutamyl-tRNA synthetas 98.1 1.2E-06 4E-11 79.0 2.7 60 1-66 204-278 (492)
8 3al0_C Glutamyl-tRNA(Gln) amid 98.0 1.1E-06 3.9E-11 80.7 1.5 60 1-66 316-390 (592)
9 2ja2_A Glutamyl-tRNA synthetas 98.0 3E-06 1E-10 76.5 2.9 64 1-66 209-288 (498)
10 4gri_A Glutamate--tRNA ligase; 97.8 7.3E-06 2.5E-10 73.9 2.7 62 1-66 230-304 (512)
11 2o5r_A Glutamyl-tRNA synthetas 97.6 1.9E-05 6.4E-10 70.9 1.6 59 1-66 219-293 (481)
12 1nzj_A Hypothetical protein YA 97.1 0.00015 5.3E-09 61.2 2.0 54 1-56 185-259 (298)
13 2law_A Yorkie homolog; YAP, SM 49.9 3.9 0.00013 23.7 0.2 6 37-42 33-38 (38)
14 1q08_A Zn(II)-responsive regul 41.4 21 0.00072 23.9 3.0 25 41-65 5-29 (99)
15 3e3v_A Regulatory protein RECX 38.0 23 0.00078 26.9 3.0 23 44-66 142-164 (177)
16 2jp7_A MRNA export factor MEX6 37.7 14 0.00048 23.6 1.5 41 20-60 16-56 (57)
17 2l4j_A YES-associated protein 35.4 7.4 0.00025 23.6 -0.1 8 37-44 38-45 (46)
18 1jmq_A YAP65, 65 kDa YES-assoc 34.2 5.2 0.00018 24.0 -1.0 11 37-47 35-45 (46)
19 2cjr_A Nucleocapsid protein; o 31.8 12 0.0004 28.0 0.4 30 20-49 38-72 (128)
20 2fi0_A Conserved domain protei 31.5 32 0.0011 22.8 2.6 26 41-66 48-74 (81)
21 2jml_A DNA binding domain/tran 30.7 33 0.0011 22.3 2.6 24 41-64 52-76 (81)
22 1b0n_B Protein (SINI protein); 30.0 41 0.0014 21.5 2.8 26 41-66 15-40 (57)
23 2djy_A SMAD ubiquitination reg 30.0 13 0.00043 22.1 0.3 7 37-43 34-40 (42)
24 1irx_A Lysyl-tRNA synthetase; 30.0 26 0.00088 30.9 2.4 32 43-75 288-323 (523)
25 1wr7_A NEDD4-2; all-beta, liga 29.3 16 0.00054 21.3 0.7 6 37-42 35-40 (41)
26 2vz4_A Tipal, HTH-type transcr 29.1 42 0.0015 23.0 3.0 24 40-63 46-69 (108)
27 2ysg_A Syntaxin-binding protei 28.4 14 0.00046 21.5 0.2 6 37-42 34-39 (40)
28 2jg6_A DNA-3-methyladenine gly 28.4 38 0.0013 26.6 2.9 22 45-66 145-170 (186)
29 1hbn_A Methyl-coenzyme M reduc 28.3 7.8 0.00027 34.9 -1.3 37 30-66 85-136 (549)
30 3c8z_A Cysteinyl-tRNA syntheta 28.2 24 0.00082 30.2 1.8 34 42-75 299-335 (414)
31 3dfg_A Xcrecx, regulatory prot 27.7 30 0.001 25.8 2.1 21 43-63 137-157 (162)
32 1g6u_A Domain swapped dimer; d 26.7 62 0.0021 19.6 3.0 19 44-62 8-26 (48)
33 2ysf_A E3 ubiquitin-protein li 26.5 17 0.00058 21.2 0.4 6 37-42 34-39 (40)
34 1e6y_A Methyl-coenzyme M reduc 26.4 7.9 0.00027 35.0 -1.6 37 30-66 99-150 (569)
35 2zaj_A Membrane-associated gua 26.2 14 0.00049 22.7 0.0 8 37-44 40-47 (49)
36 3sqg_A Methyl coenzyme M reduc 25.0 8.7 0.0003 34.7 -1.6 37 30-66 94-145 (579)
37 1wr3_A Ubiquitin-protein ligas 24.8 16 0.00056 20.4 0.1 6 37-42 31-36 (36)
38 3gp4_A Transcriptional regulat 24.5 59 0.002 23.7 3.2 25 40-64 47-71 (142)
39 1q06_A Transcriptional regulat 24.5 55 0.0019 23.5 3.0 25 41-65 46-70 (135)
40 2gib_A Nucleocapsid protein; d 24.1 20 0.00068 25.8 0.5 20 30-49 23-42 (103)
41 2ez5_W Dnedd4, E3 ubiquitin-pr 23.2 18 0.0006 21.8 0.0 7 37-43 37-43 (46)
42 3cjs_B 50S ribosomal protein L 23.1 33 0.0011 22.8 1.4 32 47-81 26-57 (72)
43 3gpv_A Transcriptional regulat 22.7 66 0.0023 23.5 3.2 25 40-64 61-85 (148)
44 2dmv_A Itchy homolog E3 ubiqui 22.7 16 0.00056 21.5 -0.2 8 37-44 34-41 (43)
45 2hue_C Histone H4; mini beta s 22.7 59 0.002 21.7 2.7 23 50-72 8-30 (84)
46 3d5l_A Regulatory protein RECX 22.2 32 0.0011 27.0 1.4 25 41-65 182-206 (221)
47 3c1d_A Protein ORAA, regulator 21.9 19 0.00066 26.7 0.0 22 43-64 135-156 (159)
48 2ge7_A Nucleocapsid protein; N 21.8 18 0.00062 26.2 -0.1 30 20-49 17-50 (108)
49 1i5h_W Rnedd4, ubiquitin ligas 21.4 20 0.0007 21.9 0.1 8 37-44 38-45 (50)
50 1c1y_B Proto-onkogene serine/t 21.4 26 0.0009 23.9 0.6 31 45-75 29-63 (77)
51 1r8d_A Transcription activator 21.1 74 0.0025 21.7 3.0 24 41-64 48-71 (109)
52 3hsq_A Acyl-[acyl-carrier-prot 21.0 48 0.0016 25.9 2.2 18 44-61 193-210 (259)
53 3iwf_A Transcription regulator 21.0 53 0.0018 22.9 2.2 26 41-66 34-60 (107)
54 1dd9_A DNA primase, DNAG; topr 20.5 44 0.0015 28.1 2.0 28 44-73 44-71 (338)
55 4edg_A DNA primase; catalytic 20.2 46 0.0016 28.0 2.0 29 43-73 31-59 (329)
No 1
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=7.5e-40 Score=298.53 Aligned_cols=164 Identities=15% Similarity=0.250 Sum_probs=134.7
Q ss_pred Cceeecccccccccchhhe---------------eeeecccchh------HHHHHCC----CCCchhhhHHHhHhcCCCH
Q 035795 1 MSFSLRSSEYNARNAQYHM---------------FNWLKIVYMP------LWFVHNG----LDNPLFLALQRIIRRRLKI 55 (164)
Q Consensus 1 ITHslrt~E~~~~~~~y~w---------------f~RLnl~~tv------~~lV~~g----WDDPRlpTi~glrRRG~~p 55 (164)
|||+|||.||.+|+++|.| |+|||+.|+. .++|++| |||||||||++||||||+|
T Consensus 224 ITHviRg~e~~~n~~~q~~l~~alg~~~~P~~~~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~P 303 (553)
T 1qtq_A 224 ITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTA 303 (553)
T ss_dssp CSEEEEEGGGTTTHHHHHHHHHTSCCSCCCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCH
T ss_pred cceEeeccchhhhHHHHHHHHHHcCCCCCCCeEEEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCH
Confidence 8999999999999998875 9999999997 5678876 9999999999999999999
Q ss_pred HHHHHHHHHhc----ceeeeeece--------------------eEEEEE-------EEEeeccCCCCCCCceEEEEecc
Q 035795 56 ESLMQFILELY----LLSLKWKTD--------------------FFIFTF-------SVRIKLRHKTCKGVGVKATTYAK 104 (164)
Q Consensus 56 eaIr~F~~~iG----~~~i~~~~l--------------------~v~v~i-------~~~~~p~hP~~~~~G~R~v~~~~ 104 (164)
|||++||..+| +..++|.+| |+||.+ +.+++|+||+++++|+|.++|++
T Consensus 304 eAirnfl~~lG~s~~~~~~e~~~le~~~~~~l~~~~~r~~av~d~~Kl~~~N~~~~~~~~~~p~~p~~~~~g~r~~~~~~ 383 (553)
T 1qtq_A 304 ASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSG 383 (553)
T ss_dssp HHHHHHHHHHCCCSSCCCBCHHHHHHHHHHHHHHHSCEECEESSEEEEEBTTCCSSCEEEEEESCSSCGGGCEEEEEECS
T ss_pred HHHHHHHHHcCCCCCccccchhhHHHHHHhCcccccccccceeccceEEEEcCCCceEEEEecCCCCChHHhhhhHhhCc
Confidence 99999999999 455777777 578877 46899999999999999999999
Q ss_pred EEEEecCccccccC---------C--------------eeecCCCcE---EEEEEcC-------CccccCceEEEeeCCC
Q 035795 105 TIWMDLANAELISG---------T--------------NFRNQDGNF---TGVVHLE-------GYKTTVLKLTWLLEIS 151 (164)
Q Consensus 105 ~iyIe~~D~~~~~~---------e--------------i~~~~~g~v---~~~~~~e-------~~kk~k~~I~Wv~~~~ 151 (164)
+||||++||++.++ + ++++++|+| .|+|+++ ..+|+|++|||||+..
T Consensus 384 ~i~ie~~Df~e~~~~~~~rl~~g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~~k~k~~ihWv~~~~ 463 (553)
T 1qtq_A 384 EIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAH 463 (553)
T ss_dssp EEEEETTTEESSCCTTCCSEETTSEEEETTSCEEEEEEEECCSSSCCCEEEECCCSSCC-----------CEECCEESTT
T ss_pred eEEEEHHHhhccCccccccCCCCCEEEeccEEEEEEEEEEEcCCCCEEEEEEEEecccccCCCccccccCCEEEEeecCC
Confidence 99999999986443 1 344566765 4666653 2578889999999765
Q ss_pred c----ceeecCCCccCC
Q 035795 152 K----LVGFDYLITKKK 164 (164)
Q Consensus 152 ~----~~~yd~L~~~~k 164 (164)
. +|+||+||++++
T Consensus 464 ~~~~~~~~yd~L~~~~~ 480 (553)
T 1qtq_A 464 ALPVEIRLYDRLFSVPN 480 (553)
T ss_dssp CEEEEEEEECCSBSSSC
T ss_pred CEeEEEEecccccCCCC
Confidence 3 599999999874
No 2
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=1.3e-38 Score=301.25 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=139.2
Q ss_pred Cceeecccccccccchhhe---------------eeeecccchh------HHHHHCC----CCCchhhhHHHhHhcCCCH
Q 035795 1 MSFSLRSSEYNARNAQYHM---------------FNWLKIVYMP------LWFVHNG----LDNPLFLALQRIIRRRLKI 55 (164)
Q Consensus 1 ITHslrt~E~~~~~~~y~w---------------f~RLnl~~tv------~~lV~~g----WDDPRlpTi~glrRRG~~p 55 (164)
|||+|||.||.+|+++|.| |+|||+.|+. .++|++| ||||||+||++||||||+|
T Consensus 264 ITHViRG~D~~~n~~~q~~l~~alG~~~~P~~~~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~P 343 (851)
T 2hz7_A 264 VTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTP 343 (851)
T ss_dssp CSEEEEEGGGTTTHHHHHHHHHHTTCSSCCEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCH
T ss_pred cceeecchhhhhChHHHHHHHHHcCCCCCCCceEEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCH
Confidence 8999999999999988874 9999999997 5678866 9999999999999999999
Q ss_pred HHHHHHHHHhc----ceeeeeece--------------------eEEEEE------EEEeeccCCCC-------------
Q 035795 56 ESLMQFILELY----LLSLKWKTD--------------------FFIFTF------SVRIKLRHKTC------------- 92 (164)
Q Consensus 56 eaIr~F~~~iG----~~~i~~~~l--------------------~v~v~i------~~~~~p~hP~~------------- 92 (164)
|||++||..+| ++.++|.+| |+||.+ ..+++|+||++
T Consensus 344 eAIr~fl~~lG~s~~~~~~e~~~le~~~r~~l~~~~~r~~av~d~~Kl~~~N~~~~~~~~~p~~p~~~~~~~~~~~~~~~ 423 (851)
T 2hz7_A 344 EAVRAFAAQIGVSRTNRTVDIAVYENAVRDDLNHRAPRVMAVLDPVKVTLTNLDGEKTLSLPYWPHDVVRDSPDGLVGMP 423 (851)
T ss_dssp HHHHHHHHHSCCCSSCEEECHHHHHHHHHHHHHTTCCEECEESSEEEEEETTCCSCEEEEEESSCHHHHHTCTTSCEECS
T ss_pred HHHHHHHHhcCCCCCcccccHHHHHHHHHhcccccccccceEecceeEEEecCCCCeEEEecCCcccccccccccccccc
Confidence 99999999999 556788877 678888 47899999999
Q ss_pred ------CCCceEEEEeccEEEEecCccccccC---------C--------------eeecCCCcE---EEEEEcCCcccc
Q 035795 93 ------KGVGVKATTYAKTIWMDLANAELISG---------T--------------NFRNQDGNF---TGVVHLEGYKTT 140 (164)
Q Consensus 93 ------~~~G~R~v~~~~~iyIe~~D~~~~~~---------e--------------i~~~~~g~v---~~~~~~e~~kk~ 140 (164)
|++|+|+++|+++||||++||++.++ + +.++++|+| .|+|..+ .+|+
T Consensus 424 ~~~~~~~~~g~r~v~~~~~iyie~~Df~e~~~~~~~rl~~g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~~-~~k~ 502 (851)
T 2hz7_A 424 GGGRVAPEEAVRDVPLTRELYIERDDFSPAPPKGFKRLTPGGTVRLRGAGIIRADDFGTDEAGQVTHIRATLLGE-DAKA 502 (851)
T ss_dssp SSCEECGGGCEEEEEECSEEEEEGGGBCSSCCTTCCSBCTTCEEEETTTEEEEEEEEEECTTSCEEEEEEEECCT-TCCC
T ss_pred cccccCccCceEEEEEcCeEEEEHHHhhhcccccceecCCCCEEEecCeEEEEEEEEEecCCCCEEEEEEEEccc-CCcc
Confidence 99999999999999999999986433 1 345667776 4556433 4788
Q ss_pred CceEEEeeCCCc----ceeecCCCccCC
Q 035795 141 VLKLTWLLEISK----LVGFDYLITKKK 164 (164)
Q Consensus 141 k~~I~Wv~~~~~----~~~yd~L~~~~k 164 (164)
|++|||||+... +|+||+||++++
T Consensus 503 k~~ihWv~~~~~~~~e~r~yd~Lf~~~~ 530 (851)
T 2hz7_A 503 AGVIHWVSAERALPAEFRLYDRLFRVPH 530 (851)
T ss_dssp SCEECCEETTTCEEEEEEEECCSBSSSC
T ss_pred CceEEEeecCCCeeEEEEecccccCCCC
Confidence 899999997653 599999999874
No 3
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=3.5e-36 Score=274.39 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=117.8
Q ss_pred Cceeecccccccccchhhe--------------eeeecccchh------HHHHHCC----CCCchhhhHHHhHhcCCCHH
Q 035795 1 MSFSLRSSEYNARNAQYHM--------------FNWLKIVYMP------LWFVHNG----LDNPLFLALQRIIRRRLKIE 56 (164)
Q Consensus 1 ITHslrt~E~~~~~~~y~w--------------f~RLnl~~tv------~~lV~~g----WDDPRlpTi~glrRRG~~pe 56 (164)
|||+|||.||.+|+++|.| |++||++|+. .++|++| ||||||+||+|||||||+|+
T Consensus 287 IThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~Pe 366 (553)
T 3aii_A 287 VTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPE 366 (553)
T ss_dssp CCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHH
T ss_pred CceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHH
Confidence 7999999999999999987 9999999997 5678765 99999999999999999999
Q ss_pred HHHHHHHHhc----ceeeeeece--------------------eEEEEE------EEEeeccCCCCCCCceEEEEeccEE
Q 035795 57 SLMQFILELY----LLSLKWKTD--------------------FFIFTF------SVRIKLRHKTCKGVGVKATTYAKTI 106 (164)
Q Consensus 57 aIr~F~~~iG----~~~i~~~~l--------------------~v~v~i------~~~~~p~hP~~~~~G~R~v~~~~~i 106 (164)
||++||.++| ++.++|+.| ||+|+| +.+++|+||++|++|+|+++|+++|
T Consensus 367 aIr~fl~~~G~s~~~~~~s~~~L~~~~r~~l~~~a~R~~~V~~p~kv~i~n~~~~~~~~~p~hp~~~~~G~r~v~~~~~i 446 (553)
T 3aii_A 367 AIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFAADPVKLEVVGLPGPVRVERPLHPDHPEIGNRVLELRGEV 446 (553)
T ss_dssp HHHHHHHHHTTCSSCBCCCHHHHHHHHHHHHTTTCEEECEEESEEEEEEETCCSCEEEEEESCTTCGGGCEEEEEESSEE
T ss_pred HHHHHHHhcCCCCccccccHHHHHHHHHHHhhccChhhhhccCcEEEEEeCCCCceEEEecCCCCCCcCccEEEEECCEE
Confidence 9999999999 678999998 789988 4689999999999999999999999
Q ss_pred EEecCccccccCCeeecCC-CcE-----EEEEEcCC---ccccC-ceEEEeeCCC
Q 035795 107 WMDLANAELISGTNFRNQD-GNF-----TGVVHLEG---YKTTV-LKLTWLLEIS 151 (164)
Q Consensus 107 yIe~~D~~~~~~ei~~~~~-g~v-----~~~~~~e~---~kk~k-~~I~Wv~~~~ 151 (164)
|||++||+. +.+|+.+ ++| .|+++.+. .+|+| ++|||||+..
T Consensus 447 ~ie~~D~~~---~~vrL~~~~~i~~~~~~~~~~~~~~~~~~k~k~~~i~Wv~~~~ 498 (553)
T 3aii_A 447 YLPGDDLGE---GPLRLIDAVNVIYSGGELRYHSEGIEEARELGASMIHWVPAES 498 (553)
T ss_dssp EEECTTCCS---EEEEETTTEEEEEETTEEEEEECSHHHHHHHTCEEECCEEGGG
T ss_pred EEEcccCCc---CceeecCEEEEEEEEEEEEEeCCchhhcccCCCCEEEEccCCC
Confidence 999999972 4455533 333 25666433 46777 7899999754
No 4
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.36 E-value=1.3e-07 Score=84.69 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=47.4
Q ss_pred Cceeecccccccccchhhe-----------eeeec----ccchhHHHHHCCCCCchhhhHHHhHhcCCCHHHHHHHHHHh
Q 035795 1 MSFSLRSSEYNARNAQYHM-----------FNWLK----IVYMPLWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILEL 65 (164)
Q Consensus 1 ITHslrt~E~~~~~~~y~w-----------f~RLn----l~~tv~~lV~~gWDDPRlpTi~glrRRG~~peaIr~F~~~i 65 (164)
|||++||.||.+++++|.| |+++. .+|+. |-+ -+.- .||+++|++||+||||++||..+
T Consensus 200 ithvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~li~~~~g~k--lSK--R~g~--~~l~~~~~~G~~peal~~~l~~l 273 (468)
T 1j09_A 200 VTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKTK--ISK--RKSH--TSLDWYKAEGFLPEALRNYLCLM 273 (468)
T ss_dssp CCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTSCB--CCT--TTSC--CBHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEeeeeeCCCCCc--ccc--ccch--hhHHHHHHCCCCHHHHHHHHHHh
Confidence 7999999999999999998 77753 34442 211 1111 17999999999999999999999
Q ss_pred c
Q 035795 66 Y 66 (164)
Q Consensus 66 G 66 (164)
|
T Consensus 274 G 274 (468)
T 1j09_A 274 G 274 (468)
T ss_dssp S
T ss_pred c
Confidence 9
No 5
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.32 E-value=1.6e-07 Score=84.73 Aligned_cols=62 Identities=8% Similarity=0.086 Sum_probs=49.2
Q ss_pred Cceeecccccccccchhhe-----------eeeecccchh--HHHHHCCCCCchhhhHHHhHhcCCCHHHHHHHHHHhc
Q 035795 1 MSFSLRSSEYNARNAQYHM-----------FNWLKIVYMP--LWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILELY 66 (164)
Q Consensus 1 ITHslrt~E~~~~~~~y~w-----------f~RLnl~~tv--~~lV~~gWDDPRlpTi~glrRRG~~peaIr~F~~~iG 66 (164)
|||++||.||..++++|.| |+++.|---. ++|-+ =+. -+||+++|++||+||||++|+..+|
T Consensus 221 IThViRG~D~l~~tprq~~l~~aLG~~~P~f~HlpLi~~~~g~KLSK--R~g--~~sl~~~r~~G~~peal~n~l~~lG 295 (490)
T 4g6z_A 221 ITHVIRGDDHVNNTPRQINILRALGGEVPVYAHLPTVLNEQGEKMSK--RHG--AMSVMGYRDAGYLPEAVLNYLARLG 295 (490)
T ss_dssp CCEEEEEGGGGGGHHHHHHHHHHTTCCCCEEEEECCEECTTSSBCCT--TTT--CCBHHHHHHTTCCHHHHHHHHHTSS
T ss_pred CCEEEeccccccChHHHHHHHHHcCCCCCeEEEecceeCCCCCcccC--CCC--CcCHHHHHHCCCCHHHHHHHHHHhC
Confidence 8999999999999999987 8888763111 23321 111 2799999999999999999999999
No 6
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.09 E-value=1.1e-06 Score=79.20 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=47.7
Q ss_pred Cceeecccccccccchhhe-----------eeeecc----cchhHHHHHCCCCCchhhhHHHhHhcCCCHHHHHHHHHHh
Q 035795 1 MSFSLRSSEYNARNAQYHM-----------FNWLKI----VYMPLWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILEL 65 (164)
Q Consensus 1 ITHslrt~E~~~~~~~y~w-----------f~RLnl----~~tv~~lV~~gWDDPRlpTi~glrRRG~~peaIr~F~~~i 65 (164)
|||++||.||..++++|.| |+++.+ ++. +|-+ =+.. .+|+++|++||+||||++|+..+
T Consensus 212 IThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g~--KLSK--R~g~--~~l~~~r~~G~~peal~n~l~~l 285 (488)
T 3afh_A 212 ISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRT--PLSK--RHGA--TSVEHFRREGILSRALMNYLALL 285 (488)
T ss_dssp CSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTSS--BCCT--TTSC--CBHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCCC--cccC--cCCc--ccHHHHHHCCCCHHHHHHHHHHh
Confidence 7999999999999999997 777644 332 2221 1222 37999999999999999999999
Q ss_pred c
Q 035795 66 Y 66 (164)
Q Consensus 66 G 66 (164)
|
T Consensus 286 G 286 (488)
T 3afh_A 286 G 286 (488)
T ss_dssp T
T ss_pred C
Confidence 9
No 7
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.08 E-value=1.2e-06 Score=78.97 Aligned_cols=60 Identities=7% Similarity=0.019 Sum_probs=47.2
Q ss_pred Cceeecccccccccchhhe-----------eeeec----ccchhHHHHHCCCCCchhhhHHHhHhcCCCHHHHHHHHHHh
Q 035795 1 MSFSLRSSEYNARNAQYHM-----------FNWLK----IVYMPLWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILEL 65 (164)
Q Consensus 1 ITHslrt~E~~~~~~~y~w-----------f~RLn----l~~tv~~lV~~gWDDPRlpTi~glrRRG~~peaIr~F~~~i 65 (164)
|||++||.||.+|++.|.| |+++. ..|. +|-+.. .+ .+|+++|++||+||||++||..+
T Consensus 204 IthviRG~D~~~~t~~q~~l~~alg~~~P~~~H~plil~~~g~--KLSKr~-g~---~~l~~~r~~G~~peal~~~l~~l 277 (492)
T 2cfo_A 204 ITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTGQ--KLSKRD-GV---TSISDFRAMGYLAPALANYMTLL 277 (492)
T ss_dssp CSEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEECSSSS--BCCTTS-SC---CBHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeeeEECCCCC--EecccC-Cc---ccHHHHHHCCCCHHHHHHHHHHh
Confidence 8999999999999999987 77744 3443 222111 11 26999999999999999999999
Q ss_pred c
Q 035795 66 Y 66 (164)
Q Consensus 66 G 66 (164)
|
T Consensus 278 G 278 (492)
T 2cfo_A 278 G 278 (492)
T ss_dssp T
T ss_pred C
Confidence 9
No 8
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.02 E-value=1.1e-06 Score=80.68 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=47.4
Q ss_pred Cceeecccccccccchhhe-----------eeeecc----cchhHHHHHCCCCCchhhhHHHhHhcCCCHHHHHHHHHHh
Q 035795 1 MSFSLRSSEYNARNAQYHM-----------FNWLKI----VYMPLWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILEL 65 (164)
Q Consensus 1 ITHslrt~E~~~~~~~y~w-----------f~RLnl----~~tv~~lV~~gWDDPRlpTi~glrRRG~~peaIr~F~~~i 65 (164)
|||++||.||..++++|.| |+++.+ +++ +|-. =+.- .+|+++|++||+||||++|+..+
T Consensus 316 ithvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~g~--KLSK--R~g~--~~l~~~~~~G~~peal~~~l~~l 389 (592)
T 3al0_C 316 ISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRT--PLSK--RHGA--TSVEHFRREGILSRALMNYLALL 389 (592)
T ss_dssp CSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTTSS--BCCT--TTCS--SBHHHHHHTTCCHHHHHHHHTTT
T ss_pred CCeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCCCC--cccc--cCCc--ccHHHHHHCCCCHHHHHHHHHHh
Confidence 7999999999999999997 777633 333 2211 1222 37999999999999999999999
Q ss_pred c
Q 035795 66 Y 66 (164)
Q Consensus 66 G 66 (164)
|
T Consensus 390 G 390 (592)
T 3al0_C 390 G 390 (592)
T ss_dssp T
T ss_pred C
Confidence 9
No 9
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=97.95 E-value=3e-06 Score=76.51 Aligned_cols=64 Identities=17% Similarity=0.072 Sum_probs=44.2
Q ss_pred Cceeecccccccccchhhe-eeee-----cccchh---HHHH--HCC-----CCCchhhhHHHhHhcCCCHHHHHHHHHH
Q 035795 1 MSFSLRSSEYNARNAQYHM-FNWL-----KIVYMP---LWFV--HNG-----LDNPLFLALQRIIRRRLKIESLMQFILE 64 (164)
Q Consensus 1 ITHslrt~E~~~~~~~y~w-f~RL-----nl~~tv---~~lV--~~g-----WDDPRlpTi~glrRRG~~peaIr~F~~~ 64 (164)
|||++||.||.+++++|.| |-.| +..--. -.|+ .+| =+.- .||+++|++||+||||++|+..
T Consensus 209 ithviRG~D~~~~t~~q~~l~~aL~~~g~g~~~P~~~h~plil~~~g~KLSKR~g~--~~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 209 ITHVLRGEDLLPSTPRQLALHQALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQ--SNLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp CCEEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECCEECSSSSBCCTTSGG--GBHHHHHHHTCCHHHHHHHHHT
T ss_pred CCEEEEChhhhhccHHHHHHHHHHHhhcCCCCCCeEEEeeeeECCCCCcccccCCc--ccHHHHHhCCCCHHHHHHHHHH
Confidence 7999999999999997776 2222 211100 1111 111 1211 4899999999999999999999
Q ss_pred hc
Q 035795 65 LY 66 (164)
Q Consensus 65 iG 66 (164)
+|
T Consensus 287 lG 288 (498)
T 2ja2_A 287 LG 288 (498)
T ss_dssp SS
T ss_pred hC
Confidence 99
No 10
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.80 E-value=7.3e-06 Score=73.93 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=48.1
Q ss_pred Cceeecccccccccchhhe-----------eeeecccchh--HHHHHCCCCCchhhhHHHhHhcCCCHHHHHHHHHHhc
Q 035795 1 MSFSLRSSEYNARNAQYHM-----------FNWLKIVYMP--LWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILELY 66 (164)
Q Consensus 1 ITHslrt~E~~~~~~~y~w-----------f~RLnl~~tv--~~lV~~gWDDPRlpTi~glrRRG~~peaIr~F~~~iG 66 (164)
|||++||.||.+++++|.| |+.+.+-.-. ++|-. =++. .+|+.+|..||.||||.||+..+|
T Consensus 230 ITHViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g~kLSK--R~~~--~~v~~~~~~G~lPeAl~NyLalLG 304 (512)
T 4gri_A 230 ITHVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDGQKLSK--RHGS--TALRQFIEDGYLPEAIINYVTLLG 304 (512)
T ss_dssp CSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTSSBCCT--TTSC--CBHHHHHHHTCCHHHHHHHHHHSS
T ss_pred CceeccccccccccHHHHHHHHHcCCCCCeEEecchhccccccccCc--cccc--ccHHHHHHcCCChHHHHHHHHHhC
Confidence 8999999999999999998 6665544322 33322 1221 369999999999999999999999
No 11
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.56 E-value=1.9e-05 Score=70.88 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=46.6
Q ss_pred Cceeecccccccccchhhe-----------eeeecc----cchhHHHHH-CCCCCchhhhHHHhHhcCCCHHHHHHHHHH
Q 035795 1 MSFSLRSSEYNARNAQYHM-----------FNWLKI----VYMPLWFVH-NGLDNPLFLALQRIIRRRLKIESLMQFILE 64 (164)
Q Consensus 1 ITHslrt~E~~~~~~~y~w-----------f~RLnl----~~tv~~lV~-~gWDDPRlpTi~glrRRG~~peaIr~F~~~ 64 (164)
|||++||.||..++++|.| |+++.+ .|. +|-. .| .. +|+++|++||.||||++|+..
T Consensus 219 ithvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G~--KLSKR~g--~~---~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 219 ITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDGK--KLSKRHG--AT---SVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp CSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTSS--BCCGGGS--CC---BHHHHHHHTCCHHHHHHHHHT
T ss_pred CCeEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCCC--cccCcCC--cc---cHHHHHHCCCCHHHHHHHHHH
Confidence 7999999999999999987 777554 222 2321 11 11 799999999999999999999
Q ss_pred hc
Q 035795 65 LY 66 (164)
Q Consensus 65 iG 66 (164)
+|
T Consensus 292 lG 293 (481)
T 2o5r_A 292 LG 293 (481)
T ss_dssp SS
T ss_pred hC
Confidence 99
No 12
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.11 E-value=0.00015 Score=61.24 Aligned_cols=54 Identities=9% Similarity=0.008 Sum_probs=38.2
Q ss_pred Cceeecccccccccchhhe-----------eeee----cccchhHHHHH-CC-----CCCchhhhHHHhHhcCCCHH
Q 035795 1 MSFSLRSSEYNARNAQYHM-----------FNWL----KIVYMPLWFVH-NG-----LDNPLFLALQRIIRRRLKIE 56 (164)
Q Consensus 1 ITHslrt~E~~~~~~~y~w-----------f~RL----nl~~tv~~lV~-~g-----WDDPRlpTi~glrRRG~~pe 56 (164)
|||++||.||..+.++|.| |..+ |.++. +|-+ .| ..|||.+++.+|+|+|++|+
T Consensus 185 iThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g~--KLSKR~g~~~v~~~~~~~~~~~~l~~lG~~~~ 259 (298)
T 1nzj_A 185 VTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGA--KLSKQNHAPALPKGDPRPVLIAALQFLGQQAE 259 (298)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---------------CCCSSCCHHHHHHHHHHTTCCCC
T ss_pred CCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCCC--cccccCCccChhcCCccHHHHHHHHHcCCCCC
Confidence 7999999999999998887 4444 44444 3322 12 67999999999999999874
No 13
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=49.89 E-value=3.9 Score=23.74 Aligned_cols=6 Identities=17% Similarity=0.274 Sum_probs=5.5
Q ss_pred CCCchh
Q 035795 37 LDNPLF 42 (164)
Q Consensus 37 WDDPRl 42 (164)
|+||||
T Consensus 33 W~~Prl 38 (38)
T 2law_A 33 WLDPRL 38 (38)
T ss_dssp SSCTTC
T ss_pred CCCCCC
Confidence 999996
No 14
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=41.37 E-value=21 Score=23.88 Aligned_cols=25 Identities=8% Similarity=0.091 Sum_probs=22.4
Q ss_pred hhhhHHHhHhcCCCHHHHHHHHHHh
Q 035795 41 LFLALQRIIRRRLKIESLMQFILEL 65 (164)
Q Consensus 41 RlpTi~glrRRG~~peaIr~F~~~i 65 (164)
|+-.|..||+-|++-+.|++|+...
T Consensus 5 rL~~I~~lr~lGfsL~eIk~~l~~~ 29 (99)
T 1q08_A 5 RLKFIRHARQLGFSLESIRELLSIR 29 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 6788999999999999999999754
No 15
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=37.97 E-value=23 Score=26.93 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.0
Q ss_pred hHHHhHhcCCCHHHHHHHHHHhc
Q 035795 44 ALQRIIRRRLKIESLMQFILELY 66 (164)
Q Consensus 44 Ti~glrRRG~~peaIr~F~~~iG 66 (164)
.++.|.||||+.+.|+..+.++.
T Consensus 142 ~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 142 IKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHCc
Confidence 46679999999999999988765
No 16
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=37.73 E-value=14 Score=23.60 Aligned_cols=41 Identities=10% Similarity=0.001 Sum_probs=28.3
Q ss_pred eeeecccchhHHHHHCCCCCchhhhHHHhHhcCCCHHHHHH
Q 035795 20 FNWLKIVYMPLWFVHNGLDNPLFLALQRIIRRRLKIESLMQ 60 (164)
Q Consensus 20 f~RLnl~~tv~~lV~~gWDDPRlpTi~glrRRG~~peaIr~ 60 (164)
-+.||+++..+=|-++|||=-|-...=--.+--|+|||...
T Consensus 16 ~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~~~~IP~eAF~~ 56 (57)
T 2jp7_A 16 ETKLNAEYTFMLAEQSNWNYEVAIKGFQSSMNGIPREAFVQ 56 (57)
T ss_dssp HHCSCHHHHHHHHHHTTTCSHHHHHHHHHSTTTSCHHHHTT
T ss_pred HHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCHHHhcc
Confidence 46788888888889999996664433222245588888654
No 17
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=35.35 E-value=7.4 Score=23.61 Aligned_cols=8 Identities=13% Similarity=0.115 Sum_probs=6.8
Q ss_pred CCCchhhh
Q 035795 37 LDNPLFLA 44 (164)
Q Consensus 37 WDDPRlpT 44 (164)
|+|||+.+
T Consensus 38 We~Pr~~~ 45 (46)
T 2l4j_A 38 WLDPRLET 45 (46)
T ss_dssp CSCCSSCC
T ss_pred CCCCCcCC
Confidence 99999864
No 18
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=34.21 E-value=5.2 Score=23.99 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=8.8
Q ss_pred CCCchhhhHHH
Q 035795 37 LDNPLFLALQR 47 (164)
Q Consensus 37 WDDPRlpTi~g 47 (164)
|.|||...++-
T Consensus 35 W~dPr~~~~~~ 45 (46)
T 1jmq_A 35 WQDPRKAMLSQ 45 (46)
T ss_dssp SSCTTTSSSCC
T ss_pred ecCCCchhhcc
Confidence 99999876653
No 19
>2cjr_A Nucleocapsid protein; oligomerization domain, viral protein; 2.50A {Sars coronavirus} SCOP: d.254.1.2 PDB: 2jw8_A
Probab=31.83 E-value=12 Score=28.04 Aligned_cols=30 Identities=10% Similarity=-0.007 Sum_probs=24.6
Q ss_pred eeeeccc---chh--HHHHHCCCCCchhhhHHHhH
Q 035795 20 FNWLKIV---YMP--LWFVHNGLDNPLFLALQRII 49 (164)
Q Consensus 20 f~RLnl~---~tv--~~lV~~gWDDPRlpTi~glr 49 (164)
||+-.-. +-. ..||++|=+|||+|.|+-|.
T Consensus 38 FG~R~~~~~~~NFGd~~~vk~G~~d~~~pqlAeLv 72 (128)
T 2cjr_A 38 FGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFA 72 (128)
T ss_dssp HCCCCSSTTSCCBCCHHHHHHGGGSTTHHHHHTTS
T ss_pred ecCCCCCcccCccCcHHHHHccccCCchHHHHHhC
Confidence 8888775 333 88999999999999998764
No 20
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=31.50 E-value=32 Score=22.84 Aligned_cols=26 Identities=8% Similarity=-0.055 Sum_probs=23.2
Q ss_pred hhhhH-HHhHhcCCCHHHHHHHHHHhc
Q 035795 41 LFLAL-QRIIRRRLKIESLMQFILELY 66 (164)
Q Consensus 41 RlpTi-~glrRRG~~peaIr~F~~~iG 66 (164)
|+-|| .|.+++|+.+++|-+-..+.|
T Consensus 48 ~~~TL~~aa~~~gid~d~l~~~L~~~g 74 (81)
T 2fi0_A 48 RKVSLKQGSKLAGTPMDKIVRTLEANG 74 (81)
T ss_dssp HHCBHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred ccCcHHHHHHHcCCCHHHHHHHHHHcC
Confidence 66788 789999999999999888888
No 21
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=30.71 E-value=33 Score=22.26 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=19.8
Q ss_pred hhhhHHHhH-hcCCCHHHHHHHHHH
Q 035795 41 LFLALQRII-RRRLKIESLMQFILE 64 (164)
Q Consensus 41 RlpTi~glr-RRG~~peaIr~F~~~ 64 (164)
|+-.|+.|+ ..|++.+.|++++..
T Consensus 52 ~l~~I~~l~~~~G~sl~ei~~~l~~ 76 (81)
T 2jml_A 52 AVRRVARLIQEEGLSVSEAIAQVKT 76 (81)
T ss_dssp HHHHHHHHHHHTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHc
Confidence 456678888 999999999998764
No 22
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=29.99 E-value=41 Score=21.47 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=20.8
Q ss_pred hhhhHHHhHhcCCCHHHHHHHHHHhc
Q 035795 41 LFLALQRIIRRRLKIESLMQFILELY 66 (164)
Q Consensus 41 RlpTi~glrRRG~~peaIr~F~~~iG 66 (164)
++-=|...++-|++.+-|++|.....
T Consensus 15 wl~LI~~Ak~lGlsleEIrefL~l~~ 40 (57)
T 1b0n_B 15 WVELMVEAKEANISPEEIRKYLLLNK 40 (57)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 45557788999999999999997553
No 23
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=29.97 E-value=13 Score=22.08 Aligned_cols=7 Identities=14% Similarity=0.453 Sum_probs=6.2
Q ss_pred CCCchhh
Q 035795 37 LDNPLFL 43 (164)
Q Consensus 37 WDDPRlp 43 (164)
|+|||++
T Consensus 34 W~~Pr~~ 40 (42)
T 2djy_A 34 FTDPRLS 40 (42)
T ss_dssp SSCTTTS
T ss_pred CCCCCCC
Confidence 9999985
No 24
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=29.95 E-value=26 Score=30.93 Aligned_cols=32 Identities=6% Similarity=-0.042 Sum_probs=26.4
Q ss_pred hhHHHhHhcCCCHHHHHHHHHHhc---ceeeeee-ce
Q 035795 43 LALQRIIRRRLKIESLMQFILELY---LLSLKWK-TD 75 (164)
Q Consensus 43 pTi~glrRRG~~peaIr~F~~~iG---~~~i~~~-~l 75 (164)
.|+..++.+ |.|+|||.|+...| +..++++ .|
T Consensus 288 i~~~~~~~~-~~pdalR~~l~~~~~~~~~~fs~~~~l 323 (523)
T 1irx_A 288 ILLSDLYEV-LEPGLVRFIYARHRPNKEIKIDLGLGI 323 (523)
T ss_dssp CCHHHHHTT-SCHHHHHHHHHSSCTTSCEEECCSTTH
T ss_pred CCHHHHHHH-cCHHHHHHHHHhcCCCCCceeCcchhH
Confidence 367888888 99999999999887 5667777 56
No 25
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=29.33 E-value=16 Score=21.30 Aligned_cols=6 Identities=17% Similarity=0.645 Sum_probs=5.6
Q ss_pred CCCchh
Q 035795 37 LDNPLF 42 (164)
Q Consensus 37 WDDPRl 42 (164)
|+|||+
T Consensus 35 We~Pr~ 40 (41)
T 1wr7_A 35 WEDPRL 40 (41)
T ss_dssp SSCGGG
T ss_pred cCCCCC
Confidence 999997
No 26
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=29.14 E-value=42 Score=23.03 Aligned_cols=24 Identities=0% Similarity=-0.022 Sum_probs=20.2
Q ss_pred chhhhHHHhHhcCCCHHHHHHHHH
Q 035795 40 PLFLALQRIIRRRLKIESLMQFIL 63 (164)
Q Consensus 40 PRlpTi~glrRRG~~peaIr~F~~ 63 (164)
.|+-.|..||..|++.+.|+.++.
T Consensus 46 ~~l~~I~~lr~~G~sl~~I~~~l~ 69 (108)
T 2vz4_A 46 DRLQQILFYRELGFPLDEVAALLD 69 (108)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHh
Confidence 356678889999999999999875
No 27
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=28.40 E-value=14 Score=21.55 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=5.5
Q ss_pred CCCchh
Q 035795 37 LDNPLF 42 (164)
Q Consensus 37 WDDPRl 42 (164)
|+||||
T Consensus 34 W~~P~~ 39 (40)
T 2ysg_A 34 WIHPVM 39 (40)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 999997
No 28
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=28.36 E-value=38 Score=26.63 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=19.9
Q ss_pred HHH-hHhcCCC---HHHHHHHHHHhc
Q 035795 45 LQR-IIRRRLK---IESLMQFILELY 66 (164)
Q Consensus 45 i~g-lrRRG~~---peaIr~F~~~iG 66 (164)
|+- |++||++ |..+..||+.+|
T Consensus 145 lsKdLKkrGFkFvGpt~~YafmQA~G 170 (186)
T 2jg6_A 145 LSKDLKQYGFKFLGPVTVFSFLEAAG 170 (186)
T ss_dssp HHHHHHTTTCCSCCHHHHHHHHHHTT
T ss_pred HHHHHHHCCCeeechHHHHHHHHHhc
Confidence 444 9999998 999999999999
No 29
>1hbn_A Methyl-coenzyme M reductase I alpha subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} SCOP: a.89.1.1 d.58.31.2 PDB: 1hbm_A* 1hbo_A* 1hbu_A* 3m1v_A* 3m2r_A* 3m2u_A* 3m2v_A* 3m30_A* 3m32_A* 3pot_A* 1mro_A* 1e6v_A*
Probab=28.30 E-value=7.8 Score=34.91 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=28.5
Q ss_pred HHHHHCC-----CCCchhhhHHHh--------HhcC--CCHHHHHHHHHHhc
Q 035795 30 LWFVHNG-----LDNPLFLALQRI--------IRRR--LKIESLMQFILELY 66 (164)
Q Consensus 30 ~~lV~~g-----WDDPRlpTi~gl--------rRRG--~~peaIr~F~~~iG 66 (164)
..+|.+- |||.|-.-|-|| +|-| +|||.|++|+.-+.
T Consensus 85 lhfvnnaamqq~wddirrtvivgmd~ah~~lekrlg~evtpetin~yle~~n 136 (549)
T 1hbn_A 85 LHFVNNAAMQQMWDDIRRTVIVGLNHAHAVIEKRLGKEVTPETITHYLETVN 136 (549)
T ss_dssp GSGGGCHHHHHHHHHHHTEEEEESHHHHHHHHHTSCCCCCHHHHHHHHHHHH
T ss_pred ceeechHHHHHHHHHhhheEEecchhHHHHHHHHhCCccCHHHHHHHHHHHh
Confidence 4556554 999998777665 5666 69999999998876
No 30
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=28.16 E-value=24 Score=30.20 Aligned_cols=34 Identities=0% Similarity=-0.153 Sum_probs=27.2
Q ss_pred hhhHHHhHhcCCCHHHHHHHHHHhc---ceeeeeece
Q 035795 42 FLALQRIIRRRLKIESLMQFILELY---LLSLKWKTD 75 (164)
Q Consensus 42 lpTi~glrRRG~~peaIr~F~~~iG---~~~i~~~~l 75 (164)
+.|++-+..+||.|+|+|-|+.+.. +..++++.+
T Consensus 299 ~v~~~~ll~~g~g~D~lR~~ll~~~~~~d~~fs~~~l 335 (414)
T 3c8z_A 299 LVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVL 335 (414)
T ss_dssp -CBHHHHHHTTCCHHHHHHHHHTSCTTSCBCCCHHHH
T ss_pred cCCHHHHhhccCCcchheeEEEecCcCCCCCcCHHHH
Confidence 5567788899999999999999832 667777766
No 31
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=27.66 E-value=30 Score=25.83 Aligned_cols=21 Identities=19% Similarity=0.061 Sum_probs=17.5
Q ss_pred hhHHHhHhcCCCHHHHHHHHH
Q 035795 43 LALQRIIRRRLKIESLMQFIL 63 (164)
Q Consensus 43 pTi~glrRRG~~peaIr~F~~ 63 (164)
=.++.|.||||+.+.|+..+.
T Consensus 137 K~~~~L~rrGF~~~~I~~~l~ 157 (162)
T 3dfg_A 137 KAADLLARRGFDGNSIRLATR 157 (162)
T ss_dssp HHHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHCCCCHHHHHHHHh
Confidence 356789999999999998654
No 32
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.71 E-value=62 Score=19.58 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=15.4
Q ss_pred hHHHhHhcCCCHHHHHHHH
Q 035795 44 ALQRIIRRRLKIESLMQFI 62 (164)
Q Consensus 44 Ti~glrRRG~~peaIr~F~ 62 (164)
.+++|++-|++||.+-..-
T Consensus 8 elqalkkegfspeelaale 26 (48)
T 1g6u_A 8 ELQALKKEGFSPEELAALE 26 (48)
T ss_dssp HHHHHHHTTCSHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 5789999999999776543
No 33
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=26.47 E-value=17 Score=21.15 Aligned_cols=6 Identities=17% Similarity=0.091 Sum_probs=5.5
Q ss_pred CCCchh
Q 035795 37 LDNPLF 42 (164)
Q Consensus 37 WDDPRl 42 (164)
|+|||+
T Consensus 34 w~~Pr~ 39 (40)
T 2ysf_A 34 YIDPRT 39 (40)
T ss_dssp SSCTTT
T ss_pred cCCCCC
Confidence 999997
No 34
>1e6y_A Methyl-coenzyme M reductase subunit alpha; biological methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP: a.89.1.1 d.58.31.2
Probab=26.39 E-value=7.9 Score=34.98 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=28.2
Q ss_pred HHHHHCC-----CCCchhhhHHHh--------HhcC--CCHHHHHHHHHHhc
Q 035795 30 LWFVHNG-----LDNPLFLALQRI--------IRRR--LKIESLMQFILELY 66 (164)
Q Consensus 30 ~~lV~~g-----WDDPRlpTi~gl--------rRRG--~~peaIr~F~~~iG 66 (164)
..+|.+- |||.|-..|-|| +|-| +|||.|++|+.-+.
T Consensus 99 lhfvnnaamqq~wddirrtvivg~d~ah~~lekrlg~evtpetin~yle~~n 150 (569)
T 1e6y_A 99 LHYVNNAAMQQMWDDIRRTCIVGLDMAHETLEKRLGKEVTPETINHYLEVLN 150 (569)
T ss_dssp GSGGGCHHHHHHHHHHHTEEEEESHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_pred ceeechHHHHHHHHHhhheeEecchhHHHHHHHHhCCccCHHHHHHHHHHHh
Confidence 4455544 999998777665 4556 69999999998876
No 35
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=26.17 E-value=14 Score=22.72 Aligned_cols=8 Identities=25% Similarity=0.235 Sum_probs=6.9
Q ss_pred CCCchhhh
Q 035795 37 LDNPLFLA 44 (164)
Q Consensus 37 WDDPRlpT 44 (164)
|+|||++.
T Consensus 40 We~P~~~~ 47 (49)
T 2zaj_A 40 YENPSGPS 47 (49)
T ss_dssp SSCCCSSC
T ss_pred cCCCCCCC
Confidence 99999873
No 36
>3sqg_A Methyl coenzyme M reductase, alpha subunit; anaerobic methane oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE P6G; 2.10A {Uncultured archaeon}
Probab=25.03 E-value=8.7 Score=34.73 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=27.9
Q ss_pred HHHHHCC-----CCCchhhhHHHh--------HhcC--CCHHHHHHHHHHhc
Q 035795 30 LWFVHNG-----LDNPLFLALQRI--------IRRR--LKIESLMQFILELY 66 (164)
Q Consensus 30 ~~lV~~g-----WDDPRlpTi~gl--------rRRG--~~peaIr~F~~~iG 66 (164)
..+|.+- |||.|-.-|-|| +|-| +|||.|++++.-+.
T Consensus 94 lhfvnnaamqq~wddirrtvivgmd~ah~~lekrlg~evtpetin~yle~~n 145 (579)
T 3sqg_A 94 LHWINNAAMQQAWDDMKRGIVLGLDDAHGLLEARLGKEVTPDTISNYMEVLN 145 (579)
T ss_dssp GSGGGCHHHHHHHHHHHTEEEEESHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_pred eEEEchHHHHHHHHHhhheeEecchhHHHHHHHHhCCccCHHHHHHHHHHHh
Confidence 4455544 999997766665 4555 79999999998876
No 37
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=24.77 E-value=16 Score=20.45 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=5.2
Q ss_pred CCCchh
Q 035795 37 LDNPLF 42 (164)
Q Consensus 37 WDDPRl 42 (164)
|+||||
T Consensus 31 We~P~l 36 (36)
T 1wr3_A 31 WHRPSL 36 (36)
T ss_dssp SSCSCC
T ss_pred eeCcCC
Confidence 999986
No 38
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=24.50 E-value=59 Score=23.70 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=21.7
Q ss_pred chhhhHHHhHhcCCCHHHHHHHHHH
Q 035795 40 PLFLALQRIIRRRLKIESLMQFILE 64 (164)
Q Consensus 40 PRlpTi~glrRRG~~peaIr~F~~~ 64 (164)
-|+-.|+-||..|++.+.|++++..
T Consensus 47 ~~l~~I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 47 RWILFTRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3677888999999999999999864
No 39
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=24.49 E-value=55 Score=23.49 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=20.8
Q ss_pred hhhhHHHhHhcCCCHHHHHHHHHHh
Q 035795 41 LFLALQRIIRRRLKIESLMQFILEL 65 (164)
Q Consensus 41 RlpTi~glrRRG~~peaIr~F~~~i 65 (164)
|+-.|+-||..|++.+.|++++...
T Consensus 46 ~l~~I~~lr~~G~sl~eI~~~l~~~ 70 (135)
T 1q06_A 46 ELTLLRQARQVGFNLEESGELVNLF 70 (135)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhh
Confidence 4567778999999999999998643
No 40
>2gib_A Nucleocapsid protein; dimer, viral protein; 1.75A {Sars coronavirus} SCOP: d.254.1.2
Probab=24.14 E-value=20 Score=25.77 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=17.3
Q ss_pred HHHHHCCCCCchhhhHHHhH
Q 035795 30 LWFVHNGLDNPLFLALQRII 49 (164)
Q Consensus 30 ~~lV~~gWDDPRlpTi~glr 49 (164)
..+|+.|=+|||+|.|+-|.
T Consensus 23 ~~~vk~G~~d~~~pqlAelv 42 (103)
T 2gib_A 23 QDLIRQGTDYKHWPQIAQFA 42 (103)
T ss_dssp HHHHHHGGGSTTHHHHHTTS
T ss_pred HHHHHhcccCcchHHHHHhC
Confidence 67888889999999998764
No 41
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=23.15 E-value=18 Score=21.81 Aligned_cols=7 Identities=14% Similarity=-0.206 Sum_probs=6.2
Q ss_pred CCCchhh
Q 035795 37 LDNPLFL 43 (164)
Q Consensus 37 WDDPRlp 43 (164)
|+|||+.
T Consensus 37 W~~Pr~~ 43 (46)
T 2ez5_W 37 WIDPRNG 43 (46)
T ss_dssp SBCTTTC
T ss_pred ccCCCCC
Confidence 9999985
No 42
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=23.14 E-value=33 Score=22.83 Aligned_cols=32 Identities=6% Similarity=0.123 Sum_probs=23.7
Q ss_pred HhHhcCCCHHHHHHHHHHhcceeeeeeceeEEEEE
Q 035795 47 RIIRRRLKIESLMQFILELYLLSLKWKTDFFIFTF 81 (164)
Q Consensus 47 glrRRG~~peaIr~F~~~iG~~~i~~~~l~v~v~i 81 (164)
+|=-+|+. |.+||.++-..+-+|.-++|.|.|
T Consensus 26 aLG~~Gvn---i~~f~k~fN~~T~~~~G~~ipV~I 57 (72)
T 3cjs_B 26 ALGQHGAN---IMEFVKAFNAATANMGDAIVPVEI 57 (72)
T ss_dssp HHHTTTCC---HHHHHHHHHHHHGGGCSCEEEEEE
T ss_pred hhcccCCC---HHHHHHHHHHHHhhcCCCeEeEEE
Confidence 46667886 679999999777788877555544
No 43
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.74 E-value=66 Score=23.47 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.8
Q ss_pred chhhhHHHhHhcCCCHHHHHHHHHH
Q 035795 40 PLFLALQRIIRRRLKIESLMQFILE 64 (164)
Q Consensus 40 PRlpTi~glrRRG~~peaIr~F~~~ 64 (164)
-|+-.|+.||..|++.+.|++++..
T Consensus 61 ~~l~~I~~lr~~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 61 KYLEMILCLKNTGMPIQKIKQFIDW 85 (148)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4677888999999999999999874
No 44
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.69 E-value=16 Score=21.49 Aligned_cols=8 Identities=25% Similarity=0.144 Sum_probs=6.8
Q ss_pred CCCchhhh
Q 035795 37 LDNPLFLA 44 (164)
Q Consensus 37 WDDPRlpT 44 (164)
|+|||+++
T Consensus 34 We~P~~~~ 41 (43)
T 2dmv_A 34 WDRPSGPS 41 (43)
T ss_dssp SSCSSSCC
T ss_pred cCCcCCCC
Confidence 99999874
No 45
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=22.66 E-value=59 Score=21.75 Aligned_cols=23 Identities=0% Similarity=-0.120 Sum_probs=18.7
Q ss_pred hcCCCHHHHHHHHHHhcceeeee
Q 035795 50 RRRLKIESLMQFILELYLLSLKW 72 (164)
Q Consensus 50 RRG~~peaIr~F~~~iG~~~i~~ 72 (164)
.+|++.++|+..+.+.|...++=
T Consensus 8 ~~~ip~~~I~Riar~~Gv~rIs~ 30 (84)
T 2hue_C 8 IQGITKPAIRRLARRGGVKRISG 30 (84)
T ss_dssp CCSSCHHHHHHHHHHTTCCEECT
T ss_pred CCCCCHHHHHHHHHHcCchhccH
Confidence 57999999999999999655543
No 46
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=22.22 E-value=32 Score=27.01 Aligned_cols=25 Identities=8% Similarity=-0.088 Sum_probs=19.4
Q ss_pred hhhhHHHhHhcCCCHHHHHHHHHHh
Q 035795 41 LFLALQRIIRRRLKIESLMQFILEL 65 (164)
Q Consensus 41 RlpTi~glrRRG~~peaIr~F~~~i 65 (164)
+.=.++.|.||||+.+.|+..+.++
T Consensus 182 k~K~~~~L~rrGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 182 EQKVQQGLTTKGFSSSVYEMIKDEV 206 (221)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 4566788999999999998766544
No 47
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.87 E-value=19 Score=26.72 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=16.2
Q ss_pred hhHHHhHhcCCCHHHHHHHHHH
Q 035795 43 LALQRIIRRRLKIESLMQFILE 64 (164)
Q Consensus 43 pTi~glrRRG~~peaIr~F~~~ 64 (164)
=-++.|.||||+.+.|+..+.+
T Consensus 135 K~~~~L~rrGF~~~~i~~~l~~ 156 (159)
T 3c1d_A 135 KIQRFLLYRGYLMEDIQDIWRN 156 (159)
T ss_dssp HHHHHHHHTTCCHHHHTTCC--
T ss_pred HHHHHHHHCCCCHHHHHHHHHh
Confidence 4567799999999999865443
No 48
>2ge7_A Nucleocapsid protein; N protein, coronavirus, IBV N protein, dimerization domain, virus/viral protein/RNA binding protein complex; 2.00A {Infectious bronchitis virus} SCOP: d.254.1.2 PDB: 2ge8_A 2ca1_A
Probab=21.80 E-value=18 Score=26.23 Aligned_cols=30 Identities=10% Similarity=-0.037 Sum_probs=22.1
Q ss_pred eeeecc--cchh--HHHHHCCCCCchhhhHHHhH
Q 035795 20 FNWLKI--VYMP--LWFVHNGLDNPLFLALQRII 49 (164)
Q Consensus 20 f~RLnl--~~tv--~~lV~~gWDDPRlpTi~glr 49 (164)
||+-.- +.-. ..||++|=+|||+|.|+-|.
T Consensus 17 FG~R~~g~~~NFGd~~~vk~G~~dp~~pqlAelv 50 (108)
T 2ge7_A 17 FGPRTKGKEGNFGDDKMNEEGIKDGRVTAMLNLV 50 (108)
T ss_dssp HCSCCSSSTTCBCCHHHHHHGGGSHHHHHHHTTS
T ss_pred ecCCCCCCCCCcCcHHHHHccccCcchHHHHHhC
Confidence 666544 3333 78888999999999988764
No 49
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=21.44 E-value=20 Score=21.95 Aligned_cols=8 Identities=13% Similarity=0.389 Sum_probs=6.9
Q ss_pred CCCchhhh
Q 035795 37 LDNPLFLA 44 (164)
Q Consensus 37 WDDPRlpT 44 (164)
|+|||+..
T Consensus 38 We~Pr~~~ 45 (50)
T 1i5h_W 38 WEDPRMQN 45 (50)
T ss_dssp SSCTTTSC
T ss_pred eeCCCCCc
Confidence 99999864
No 50
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=21.36 E-value=26 Score=23.86 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=19.5
Q ss_pred HHHhHhcCCCHHHHHHHHHH---hc-ceeeeeece
Q 035795 45 LQRIIRRRLKIESLMQFILE---LY-LLSLKWKTD 75 (164)
Q Consensus 45 i~glrRRG~~peaIr~F~~~---iG-~~~i~~~~l 75 (164)
..+|++||++||.--=|... -| ...++|+.-
T Consensus 29 ~KaLk~R~L~pe~C~V~~~~~~~~~~~~~i~WdtD 63 (77)
T 1c1y_B 29 MKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTD 63 (77)
T ss_dssp HHHHHTTTCCGGGEEEEEEEGGGSSEEEEECTTSB
T ss_pred HHHHHHcCCCHHHeEEEEeccCCCCCccccchhHh
Confidence 35799999999854444222 13 346777754
No 51
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.11 E-value=74 Score=21.72 Aligned_cols=24 Identities=0% Similarity=0.088 Sum_probs=19.5
Q ss_pred hhhhHHHhHhcCCCHHHHHHHHHH
Q 035795 41 LFLALQRIIRRRLKIESLMQFILE 64 (164)
Q Consensus 41 RlpTi~glrRRG~~peaIr~F~~~ 64 (164)
|+-.|..|+.-|++.+.|+.++..
T Consensus 48 ~l~~I~~l~~~G~~l~~I~~~l~~ 71 (109)
T 1r8d_A 48 RLQQILFFKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHhC
Confidence 456677788899999999998753
No 52
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*
Probab=21.04 E-value=48 Score=25.92 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=14.6
Q ss_pred hHHHhHhcCCCHHHHHHH
Q 035795 44 ALQRIIRRRLKIESLMQF 61 (164)
Q Consensus 44 Ti~glrRRG~~peaIr~F 61 (164)
...||+|||++++.+...
T Consensus 193 ~~~g~~r~~~~~~~~~~l 210 (259)
T 3hsq_A 193 NSVGMKRAGFSPEVRNAI 210 (259)
T ss_dssp CHHHHHHTTCCHHHHHHH
T ss_pred cccceeeCCCCHHHHHHH
Confidence 457899999999977663
No 53
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=21.02 E-value=53 Score=22.88 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=21.2
Q ss_pred hhhhHHHh-HhcCCCHHHHHHHHHHhc
Q 035795 41 LFLALQRI-IRRRLKIESLMQFILELY 66 (164)
Q Consensus 41 RlpTi~gl-rRRG~~peaIr~F~~~iG 66 (164)
-..|++-| .+-|.++.+|-.||..+|
T Consensus 34 ~~~si~elA~~~~vS~aTv~Rf~kkLG 60 (107)
T 3iwf_A 34 VNMTSQEIANQLETSSTSIIRLSKKVT 60 (107)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHCCHHHHHHHHCCCHHHHHHHHHHhC
Confidence 45667775 456999999999999999
No 54
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=20.55 E-value=44 Score=28.09 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=19.5
Q ss_pred hHHHhHhcCCCHHHHHHHHHHhcceeeeee
Q 035795 44 ALQRIIRRRLKIESLMQFILELYLLSLKWK 73 (164)
Q Consensus 44 Ti~glrRRG~~peaIr~F~~~iG~~~i~~~ 73 (164)
-+.=|.+||++++.|..|- +|-+.-+|+
T Consensus 44 a~~YL~~RGls~e~i~~f~--lGyap~~~~ 71 (338)
T 1dd9_A 44 ARQYLEKRGLSHEVIARFA--IGFAPPGWD 71 (338)
T ss_dssp HHHHHHHTTCCHHHHHHHT--CEEECSSSC
T ss_pred HHHHHHHcCCCHHHHHHcc--eeeccccHH
Confidence 3455899999999999875 563333343
No 55
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=20.17 E-value=46 Score=28.00 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=20.2
Q ss_pred hhHHHhHhcCCCHHHHHHHHHHhcceeeeee
Q 035795 43 LALQRIIRRRLKIESLMQFILELYLLSLKWK 73 (164)
Q Consensus 43 pTi~glrRRG~~peaIr~F~~~iG~~~i~~~ 73 (164)
+-+.=|.+||+++|.|..| .+|-+.-+|+
T Consensus 31 ~a~~YL~~Rgl~~e~i~~f--~lGyap~~~~ 59 (329)
T 4edg_A 31 QALTYLQERGFTDALIKER--GIGFAPDSSH 59 (329)
T ss_dssp HHHHHHHHTTCCHHHHHHH--TCEEECSSSC
T ss_pred HHHHHHHHcCCCHHHHHhC--CeeeccCcHH
Confidence 3456689999999999996 4563333344
Done!