RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 035795
         (164 letters)



>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
           N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
          Length = 526

 Score = 28.7 bits (63), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 49  IRRRLKIESLMQFILELYLLSLKWKTDFFIFTFS 82
           +  R    SL   IL+++ LS   + DF + TFS
Sbjct: 376 LHNRYTENSLRGVILDIHFLS---QADFLVCTFS 406


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.7 bits (58), Expect = 4.0
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 17/63 (26%)

Query: 39  NPLFLAL------QRIIR----RRLKIESLMQFILELYLLSLKWK------TDFFIFTFS 82
           NP  L++        +      + +  + L   I+E  L  L+            +F  S
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 83  VRI 85
             I
Sbjct: 385 AHI 387


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,506,354
Number of extensions: 135878
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 6
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.6 bits)