BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035798
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|B Chain B, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|C Chain C, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|D Chain D, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|E Chain E, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|F Chain F, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|G Chain G, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3STA|V Chain V, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|A Chain A, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|B Chain B, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|C Chain C, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|E Chain E, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|F Chain F, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|G Chain G, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|I Chain I, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|K Chain K, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|L Chain L, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|M Chain M, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|N Chain N, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|S Chain S, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|T Chain T, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
Length = 197
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 103/174 (59%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RI+ +G + V +V++L++LQ D + IYLYINS G G + GFAIY
Sbjct: 30 RIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIY 80
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ +K +V T+ +G A M LLAAG KGKRF +P+A++MI QP + G A+++
Sbjct: 81 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEI 138
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I A + R+ L ++L++ TG S E + K R + + AKE+G+ID+V+
Sbjct: 139 EIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 192
>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|B Chain B, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|C Chain C, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|D Chain D, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|E Chain E, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|F Chain F, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|G Chain G, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|H Chain H, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|I Chain I, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|J Chain J, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|K Chain K, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|L Chain L, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|M Chain M, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|N Chain N, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|O Chain O, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|P Chain P, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Q Chain Q, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|R Chain R, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|S Chain S, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|T Chain T, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|U Chain U, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|V Chain V, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|W Chain W, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|X Chain X, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Y Chain Y, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Z Chain Z, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|AA Chain a, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|BB Chain b, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
Length = 203
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 103/174 (59%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RI+ +G + V +V++L++LQ D + IYLYINS G G + GFAIY
Sbjct: 28 RIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIY 78
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ +K +V T+ +G A M LLAAG KGKRF +P+A++MI QP + G A+++
Sbjct: 79 DTIQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEI 136
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I A + R+ L ++L++ TG S E + K R + + AKE+G+ID+V+
Sbjct: 137 EIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190
>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3V5E|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
Length = 203
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 103/174 (59%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RI+ +G + V +V++L++LQ D + IYLYINS G G + GFAIY
Sbjct: 28 RIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------GSVTAGFAIY 78
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ +K +V T+ +G A M LLAAG KGKRF +P+A++MI QP + G A+++
Sbjct: 79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEI 136
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I A + R+ L ++L++ TG S E + K R + + AKE+G+ID+V+
Sbjct: 137 EIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVM 190
>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|B Chain B, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|C Chain C, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|D Chain D, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|E Chain E, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|F Chain F, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|G Chain G, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|H Chain H, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|I Chain I, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|J Chain J, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|K Chain K, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|L Chain L, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|M Chain M, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|N Chain N, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL4|A Chain A, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|B Chain B, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|C Chain C, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|D Chain D, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|E Chain E, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|F Chain F, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|G Chain G, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|H Chain H, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|I Chain I, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|J Chain J, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|K Chain K, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|L Chain L, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|M Chain M, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|N Chain N, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
Length = 196
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 106/176 (60%), Gaps = 11/176 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RIV + + +V +VA+L++L+ DP+ I LYINS G G+ + G +IY
Sbjct: 29 RIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPG---------GVITSGLSIY 79
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ ++ +V T+ +G A M LL+ G KGKRF +PH++IMI QP + G ASD+
Sbjct: 80 DTMNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQG--QASDI 137
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWR 296
I + E + + + +LA+++G S E + K R ++M ++ AKE+G+IDKVL +
Sbjct: 138 EIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQK 193
>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|B Chain B, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|C Chain C, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|D Chain D, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|E Chain E, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|F Chain F, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|G Chain G, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|H Chain H, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|I Chain I, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|J Chain J, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|K Chain K, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|L Chain L, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|M Chain M, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|N Chain N, Crystal Structure Of H.Pylori Clpp
pdb|2ZL2|A Chain A, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|B Chain B, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|C Chain C, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|D Chain D, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|E Chain E, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|F Chain F, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|G Chain G, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|H Chain H, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|I Chain I, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|J Chain J, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|K Chain K, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|L Chain L, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|M Chain M, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|N Chain N, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
Length = 196
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 106/176 (60%), Gaps = 11/176 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RIV + + +V +VA+L++L+ DP+ I LYINS G G+ + G +IY
Sbjct: 29 RIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPG---------GVITSGLSIY 79
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ ++ +V T+ +G A M LL+ G KGKRF +PH++IMI QP + G ASD+
Sbjct: 80 DTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQG--QASDI 137
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWR 296
I + E + + + +LA+++G S E + K R ++M ++ AKE+G+IDKVL +
Sbjct: 138 EIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQK 193
>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|B Chain B, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|C Chain C, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|D Chain D, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|E Chain E, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|F Chain F, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|G Chain G, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
Length = 277
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 101/174 (58%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RIV + P+ +V LV+A+L++LQ K PI++YINS G G+ + G AIY
Sbjct: 83 RIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG---------GVVTAGLAIY 133
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ + + T VG A M LLLAAGT G R +P+++IMI QP + G A+D+
Sbjct: 134 DTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARG--QATDI 191
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I+A+E M + L + AKHT S + + + R +M A+EFG++DKVL
Sbjct: 192 AIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVL 245
>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|B Chain B, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|C Chain C, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|D Chain D, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|E Chain E, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|F Chain F, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|G Chain G, Structure Of Clpp From Bacillus Subtilis In Compressed
State
Length = 196
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RI+ +G + V +V++L++L DP+ I LYINS G G + G AIY
Sbjct: 27 RIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG---------GSITAGMAIY 77
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ +K +V T+ +G A M LLAAG KGKR+ +P++++MI QP + G A+++
Sbjct: 78 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQG--QATEI 135
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I AK ++ RD L K+LA+ TG E + + R + A E+G+IDK+L
Sbjct: 136 EIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|B Chain B, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|C Chain C, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|D Chain D, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|E Chain E, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|F Chain F, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|G Chain G, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTH|A Chain A, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|B Chain B, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|C Chain C, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|D Chain D, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|E Chain E, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|F Chain F, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|G Chain G, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
Length = 199
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RI+ +G + V +V++L++L DP+ I LYINS G G + G AIY
Sbjct: 27 RIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG---------GSITAGMAIY 77
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ +K +V T+ +G A M LLAAG KGKR+ +P++++MI QP + G A+++
Sbjct: 78 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQG--QATEI 135
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I AK ++ RD L K+LA+ TG E + + R + A E+G+IDK+L
Sbjct: 136 EIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1
pdb|3KTI|B Chain B, Structure Of Clpp In Complex With Adep1
pdb|3KTI|C Chain C, Structure Of Clpp In Complex With Adep1
pdb|3KTI|D Chain D, Structure Of Clpp In Complex With Adep1
pdb|3KTI|E Chain E, Structure Of Clpp In Complex With Adep1
pdb|3KTI|F Chain F, Structure Of Clpp In Complex With Adep1
pdb|3KTI|G Chain G, Structure Of Clpp In Complex With Adep1
pdb|3KTJ|A Chain A, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|B Chain B, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|C Chain C, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|D Chain D, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|E Chain E, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|F Chain F, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|G Chain G, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTK|A Chain A, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|B Chain B, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|C Chain C, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|D Chain D, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|E Chain E, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|F Chain F, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|G Chain G, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|H Chain H, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|I Chain I, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|J Chain J, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|K Chain K, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|L Chain L, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|M Chain M, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|N Chain N, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
Length = 199
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RI+ +G + V +V++L++L DP+ I LYINS G G + G AIY
Sbjct: 27 RIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG---------GSITAGMAIY 77
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ +K +V T+ +G A M LLAAG KGKR+ +P++++MI QP + G A+++
Sbjct: 78 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQG--QATEI 135
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I AK ++ RD L K+LA+ TG E + + R + A E+G+IDK+L
Sbjct: 136 EIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 189
>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|B Chain B, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|C Chain C, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|D Chain D, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|E Chain E, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|F Chain F, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|G Chain G, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
Length = 197
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RI+ +G + V +V++L++L DP+ I LYINS G G + G AIY
Sbjct: 28 RIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG---------GSITAGMAIY 78
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ +K +V T+ +G A M LLAAG KGKR+ +P++++MI QP + G A+++
Sbjct: 79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQG--QATEI 136
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I AK ++ RD L K+LA+ TG E + + R + A E+G+IDK+L
Sbjct: 137 EIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 190
>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|S Chain S, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|T Chain T, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|U Chain U, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|O Chain O, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|P Chain P, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Q Chain Q, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Y Chain Y, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Z Chain Z, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|AA Chain a, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|BB Chain b, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|V Chain V, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|W Chain W, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|X Chain X, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|M Chain M, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|L Chain L, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|K Chain K, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|J Chain J, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|I Chain I, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|H Chain H, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|N Chain N, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|F Chain F, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|E Chain E, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|D Chain D, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|C Chain C, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|B Chain B, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|A Chain A, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|G Chain G, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
Length = 207
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 102/174 (58%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
R++++ + + L+VA++++L+ +P+ IYLYINS G G+ + G +IY
Sbjct: 41 RVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG---------GVITAGMSIY 91
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ +K +V T+ +G A M LL AG KGKRF +P++++MI QP G A+D+
Sbjct: 92 DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQG--QATDI 149
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I A+E + + + +L+A HTG S E + + R + + A E+G++D +L
Sbjct: 150 EIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203
>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|B Chain B, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|C Chain C, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|D Chain D, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|E Chain E, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|F Chain F, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|G Chain G, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|H Chain H, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|I Chain I, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|J Chain J, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|K Chain K, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|L Chain L, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|M Chain M, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|N Chain N, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1YG6|A Chain A, Clpp
pdb|1YG6|B Chain B, Clpp
pdb|1YG6|C Chain C, Clpp
pdb|1YG6|D Chain D, Clpp
pdb|1YG6|E Chain E, Clpp
pdb|1YG6|F Chain F, Clpp
pdb|1YG6|G Chain G, Clpp
pdb|1YG6|H Chain H, Clpp
pdb|1YG6|I Chain I, Clpp
pdb|1YG6|J Chain J, Clpp
pdb|1YG6|K Chain K, Clpp
pdb|1YG6|L Chain L, Clpp
pdb|1YG6|M Chain M, Clpp
pdb|1YG6|N Chain N, Clpp
pdb|2FZS|A Chain A, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|B Chain B, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|C Chain C, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|D Chain D, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|E Chain E, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|F Chain F, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|G Chain G, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|H Chain H, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|I Chain I, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|J Chain J, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|K Chain K, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|L Chain L, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|M Chain M, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|N Chain N, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
Length = 193
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 102/174 (58%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
R++++ + + L+VA++++L+ +P+ IYLYINS G G+ + G +IY
Sbjct: 27 RVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG---------GVITAGMSIY 77
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ +K +V T+ +G A M LL AG KGKRF +P++++MI QP G A+D+
Sbjct: 78 DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQG--QATDI 135
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I A+E + + + +L+A HTG S E + + R + + A E+G++D +L
Sbjct: 136 EIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 189
>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|B Chain B, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|C Chain C, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|D Chain D, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|E Chain E, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|F Chain F, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|G Chain G, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|H Chain H, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|I Chain I, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|J Chain J, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|K Chain K, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|L Chain L, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|M Chain M, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|N Chain N, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|O Chain O, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|P Chain P, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Q Chain Q, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|R Chain R, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|S Chain S, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|T Chain T, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|U Chain U, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|V Chain V, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|W Chain W, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|X Chain X, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Y Chain Y, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Z Chain Z, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|AA Chain a, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|BB Chain b, The Structure Of A V6a Variant Of Clpp
Length = 193
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 102/174 (58%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
R++++ + + L+VA++++L+ +P+ IYLYINS G G+ + G +IY
Sbjct: 27 RVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG---------GVITAGMSIY 77
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ +K +V T+ +G A M LL AG KGKRF +P++++MI QP G A+D+
Sbjct: 78 DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQG--QATDI 135
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I A+E + + + +L+A HTG S E + + R + + A E+G++D +L
Sbjct: 136 EIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 189
>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|B Chain B, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|C Chain C, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|D Chain D, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|E Chain E, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|F Chain F, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|G Chain G, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|H Chain H, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|I Chain I, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|J Chain J, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|K Chain K, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|L Chain L, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|M Chain M, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|N Chain N, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|O Chain O, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|P Chain P, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Q Chain Q, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|R Chain R, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|S Chain S, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|T Chain T, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|U Chain U, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|V Chain V, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|W Chain W, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|X Chain X, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Y Chain Y, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Z Chain Z, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|1 Chain 1, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|2 Chain 2, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
Length = 193
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 101/174 (58%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
R++++ + + L+VA++++L+ +P+ IYLYINS G G+ + G +IY
Sbjct: 27 RVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG---------GVITAGMSIY 77
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ +K +V T+ +G A M LL AG KGKRF +P++++MI QP G A+D+
Sbjct: 78 DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQG--QATDI 135
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I +E + + + +L+A HTG S E + + R + + A E+G++D +L
Sbjct: 136 EIHCREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 189
>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme
pdb|4HNK|B Chain B, Crystal Structure Of An Enzyme
pdb|4HNK|C Chain C, Crystal Structure Of An Enzyme
pdb|4HNK|D Chain D, Crystal Structure Of An Enzyme
pdb|4HNK|E Chain E, Crystal Structure Of An Enzyme
pdb|4HNK|F Chain F, Crystal Structure Of An Enzyme
pdb|4HNK|G Chain G, Crystal Structure Of An Enzyme
pdb|4HNK|H Chain H, Crystal Structure Of An Enzyme
pdb|4HNK|I Chain I, Crystal Structure Of An Enzyme
pdb|4HNK|J Chain J, Crystal Structure Of An Enzyme
pdb|4HNK|K Chain K, Crystal Structure Of An Enzyme
pdb|4HNK|L Chain L, Crystal Structure Of An Enzyme
pdb|4HNK|M Chain M, Crystal Structure Of An Enzyme
pdb|4HNK|N Chain N, Crystal Structure Of An Enzyme
Length = 219
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 113/202 (55%), Gaps = 12/202 (5%)
Query: 100 SYNEHRXXXXXXXXXXXXXHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINS 159
SYNEH RI+++ P+ P ++E ++++L+YL++ + PI+LYINS
Sbjct: 24 SYNEHHKYNINIPSLLLSK--RIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINS 81
Query: 160 TGTTRDDGESVGME--SEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMM 217
TG D+ + + + ++ +I D + + +V+T +G A G+AC+L ++G KG RF +
Sbjct: 82 TGDI-DNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSL 140
Query: 218 PHAKIMIQQPRLPSSGLLP---ASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIR 274
++ + Q S ++P A+++ I+ KE M + ++++++K+T ++ +
Sbjct: 141 KNSSFCLNQ----SYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLE 196
Query: 275 RPYHMDSRRAKEFGVIDKVLWR 296
R + ++ A +F +ID +L +
Sbjct: 197 RDKYFNADEAVDFKLIDHILEK 218
>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|B Chain B, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|C Chain C, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|D Chain D, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|E Chain E, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|F Chain F, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|G Chain G, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
Length = 205
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 108/181 (59%), Gaps = 10/181 (5%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME--SEGFA 178
RI+++ P+ P ++E ++++L+YL++ + PI+LYINSTG D+ + + + ++ +
Sbjct: 29 RIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDI-DNNKIINLNGITDVIS 87
Query: 179 IYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLP-- 236
I D + + +V+T +G A G+AC+L ++G KG RF + ++ + Q S ++P
Sbjct: 88 IVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQ----SYSIIPFN 143
Query: 237 -ASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLW 295
A+++ I+ KE M + ++++++K+T ++ + R + ++ A +F +ID +L
Sbjct: 144 QATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILE 203
Query: 296 R 296
+
Sbjct: 204 K 204
>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|H Chain H, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|I Chain I, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|J Chain J, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|K Chain K, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|L Chain L, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|M Chain M, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|N Chain N, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
Length = 200
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RI+++G + + + A+++ L D I LYINS G G S G AIY
Sbjct: 28 RIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG---------GSISAGMAIY 78
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT++ C++ T A+G A M LLAAGTKGKR+ +PHA+I++ QP +G A+D+
Sbjct: 79 DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTG--SAADI 136
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWR 296
I+A++ V + + +L A+ TG E + R + A E+G +D ++ R
Sbjct: 137 AIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 192
>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|B Chain B, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|C Chain C, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|D Chain D, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|E Chain E, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|F Chain F, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|G Chain G, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|H Chain H, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|I Chain I, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|J Chain J, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|K Chain K, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|L Chain L, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|M Chain M, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|N Chain N, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
Length = 206
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RI+++G + + + A+++ L D I LYINS G G S G AIY
Sbjct: 29 RIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG---------GSISAGMAIY 79
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT++ C++ T A+G A M LLAAGTKGKR+ +PHA+I++ QP +G A+D+
Sbjct: 80 DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTG--SAADI 137
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWR 296
I+A++ V + + +L A+ TG E + R + A E+G +D ++ R
Sbjct: 138 AIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 193
>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
Length = 208
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 11/176 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RI+++G + + + A+++ L D I LYINS G G S G AIY
Sbjct: 28 RIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG---------GSISAGMAIY 78
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT++ C++ T A+G A M LLAAGTKGKR+ +PHA+I++ QP +G A+D+
Sbjct: 79 DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTG--SAADI 136
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWR 296
I+A++ V + + +L A+ TG E + R + A E+G +D ++ R
Sbjct: 137 AIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR 192
>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|B Chain B, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|C Chain C, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|D Chain D, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|E Chain E, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|F Chain F, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|G Chain G, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
Length = 201
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 91/174 (52%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RIV++ + LV+A+L++L+ DP IY YINS G + G +Y
Sbjct: 31 RIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGX---------VTAGXGVY 81
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT +K +V T+ +G A LLLA G KGKR+ +P ++I I QP G ASD+
Sbjct: 82 DTXQFIKPDVSTICIGLAASXGSLLLAGGAKGKRYSLPSSQIXIHQPLGGFRG--QASDI 139
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I AK + +D L K+LA HTG E + K R + AK +G+ID V+
Sbjct: 140 EIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFXXADEAKAYGLIDHVI 193
>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|B Chain B, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|C Chain C, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|D Chain D, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|E Chain E, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|F Chain F, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|G Chain G, The Structure Of Streptococcus Pneumoniae A153p Clpp
Length = 218
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 9/173 (5%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RI+ + P+ V+A+L++L D IYLY+N+ G G S G AI
Sbjct: 46 RIIXLTGPVEDNXANSVIAQLLFLDAQDSTKDIYLYVNTPG---------GSVSAGLAIV 96
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT +K +V T+ G A ++ ++G KGKRF +P+A+ I QP + G +D+
Sbjct: 97 DTXNFIKADVQTIVXGXAASXGTVIASSGAKGKRFXLPNAEYXIHQPXGGTGGGTQQTDM 156
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKV 293
I + + R+TL K+LA+++G S E V R ++ E+G ID++
Sbjct: 157 AIAPEHLLKTRNTLEKILAENSGQSXEKVHADAERDNWXSAQETLEYGFIDEI 209
>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|B Chain B, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|C Chain C, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|D Chain D, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|E Chain E, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|F Chain F, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|G Chain G, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
Length = 215
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 12/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RI+Y+ + + ++++L+YL ++ I +YINS G G +EG AI
Sbjct: 40 RIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPG---------GSINEGLAIL 89
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
D +K ++ T++ G MA ++LA+G KGKR +P+ +IMI QP + G D+
Sbjct: 90 DIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFG--HPQDI 147
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I+ KE + + L L+ T + E + K R Y+M++ AK++G+ID+V+
Sbjct: 148 EIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVI 201
>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|B Chain B, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|C Chain C, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|D Chain D, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|E Chain E, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|F Chain F, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|G Chain G, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|H Chain H, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|I Chain I, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|J Chain J, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|K Chain K, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|L Chain L, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|M Chain M, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|N Chain N, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
Length = 195
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 11/174 (6%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
R++++ + L +A+ ++L+ +P I LYINS G G + AIY
Sbjct: 29 RVIFLVGQVEDHXANLAIAQXLFLESENPNKDINLYINSPG---------GAVTSAXAIY 79
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT +K +V T+ +G A LLLA G KGKR +PH+ + I Q G +D+
Sbjct: 80 DTXQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXIHQVLGGYQG--QGTDI 137
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
I AK+ D L ++LAKHTG E V K R Y + A E+G+ID +
Sbjct: 138 QIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSIF 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,306,221
Number of Sequences: 62578
Number of extensions: 301258
Number of successful extensions: 522
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 23
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)