BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035798
(313 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3,
chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1
Length = 330
Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/323 (72%), Positives = 265/323 (82%), Gaps = 16/323 (4%)
Query: 4 SFLQAPMAALVPSTSVHS----LRSKST--RSLKTF-------CSAKIPNPMPAHINPND 50
S LQA M +L+P +S S L S S+ R+LKTF SAKIP P INP D
Sbjct: 3 SCLQASMNSLLPRSSSFSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMP---PINPKD 59
Query: 51 PFLSKLAAAAAASPEAFVNRPSNSGTLPYLDIYDSPTLMASPAQVERSASYNEHRPDTPP 110
PFLS LA+ AA SPE +NRP N+ PYLDI+DSP LM+SPAQVERS +YNEHRP TPP
Sbjct: 60 PFLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPP 119
Query: 111 PDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESV 170
PDLPS+LL GRIVYIGMPLVPAVTELVVAELMYLQW+DPK PIY+YINSTGTTRDDGE+V
Sbjct: 120 PDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETV 179
Query: 171 GMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLP 230
GMESEGFAIYD+LMQ+K EVHTV VGAAIG ACLLL+AGTKGKRFMMPHAK MIQQPR+P
Sbjct: 180 GMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVP 239
Query: 231 SSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVI 290
SSGL+PASDVLIRAKE + NRD LV+LL+KHTGNS E V +RRPY+MD+ +AKEFGVI
Sbjct: 240 SSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVI 299
Query: 291 DKVLWRGQETIMAEVAPPEEWDK 313
D++LWRGQE I+A+V P EE+DK
Sbjct: 300 DRILWRGQEKIIADVVPSEEFDK 322
>sp|P74466|CLPR_SYNY3 Putative ATP-dependent Clp protease proteolytic subunit-like
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpR
PE=3 SV=1
Length = 225
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 143/208 (68%), Gaps = 12/208 (5%)
Query: 97 RSASYNEHRPDTPPPDLPSLLLHGRIVYIGMPLVPA----------VTELVVAELMYLQW 146
+S+ Y + TPPPDL SLLL RIVY+GMPL + VT+L++A+L+YLQ+
Sbjct: 7 QSSYYGDMAFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQF 66
Query: 147 MDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLL 206
DP PIY YINSTGT+ G++VG E+E FAI DTL +K VHT+ +G A+G A ++L
Sbjct: 67 DDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMIL 126
Query: 207 AAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSE 266
++GTKG R +PHA I++ Q R + G A+D+ IRAKE + N+ T++++L+ +TG ++
Sbjct: 127 SSGTKGYRASLPHATIVLNQNRTGAQG--QATDIQIRAKEVISNKQTMLEILSLNTGQTQ 184
Query: 267 EFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
E + K + R +++ +AKE+G+ID+VL
Sbjct: 185 EKLAKDMDRTFYLTPAQAKEYGLIDRVL 212
>sp|Q9XJ35|CLPR1_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 1,
chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1
Length = 387
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 129/191 (67%), Gaps = 3/191 (1%)
Query: 104 HRPDTPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTT 163
RP T PPDLPSLLL RI Y+GMP+VPAVTEL+VA+ M+L + +P PIYLYINS GT
Sbjct: 163 ERPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQ 222
Query: 164 RDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIM 223
+ E+VG E+E +AI DT+ K +V+T+ G A G A +LL+ G KG R + PH+
Sbjct: 223 NEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTK 282
Query: 224 IQQPRLP-SSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSR 282
+ P++ SSG A D+ I+AKE N + ++LLAK TG S+E + + I+RP ++ ++
Sbjct: 283 LYLPKVNRSSG--AAIDMWIKAKELDANTEYYIELLAKGTGKSKEQINEDIKRPKYLQAQ 340
Query: 283 RAKEFGVIDKV 293
A ++G+ DK+
Sbjct: 341 AAIDYGIADKI 351
>sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4,
chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1
Length = 305
Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/195 (48%), Positives = 127/195 (65%), Gaps = 5/195 (2%)
Query: 107 DTPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDD 166
+ PPPDL S L RIVY+GM LVP+VTEL++AE +YLQ+ D + PIYLYINSTGTT+ +
Sbjct: 100 EQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTK-N 158
Query: 167 GESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQ 226
GE +G ++E FAIYD + +K + T+ VG A G A LLL AG KG R +P + IMI+Q
Sbjct: 159 GEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQ 218
Query: 227 PRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKE 286
P G A+DV I KE + +VKL +KH G S E + ++RP + A E
Sbjct: 219 PIARFQG--QATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVE 276
Query: 287 FGVIDKVLW--RGQE 299
+G+IDKV++ RG +
Sbjct: 277 YGIIDKVVYNERGSQ 291
>sp|Q9L4P4|CLPR_SYNE7 Putative ATP-dependent Clp protease proteolytic subunit-like
OS=Synechococcus elongatus (strain PCC 7942) GN=clpR
PE=3 SV=1
Length = 228
Score = 161 bits (407), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 123/184 (66%), Gaps = 12/184 (6%)
Query: 121 RIVYIGMPLVPA----------VTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESV 170
RI+Y+GMPL + VTEL++A+L+YL++ +P+ PIY YINSTGT+ G+++
Sbjct: 33 RIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGDAI 92
Query: 171 GMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLP 230
G E+E FAI DT+ +K VHT+ +G A+G A ++L+ GT G R +PHA I++ QPR
Sbjct: 93 GYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPGNRASLPHATIVLNQPRTG 152
Query: 231 SSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVI 290
+ G ASD+ IRAKE + N+ T++++ A++TG + + + R +M +A E+G+I
Sbjct: 153 AQG--QASDIQIRAKEVLANKRTMLEIFARNTGQDPDRLARDTDRMLYMTPAQAVEYGLI 210
Query: 291 DKVL 294
D+VL
Sbjct: 211 DRVL 214
>sp|B1L812|CLPP_THESQ ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp.
(strain RQ2) GN=clpP PE=3 SV=1
Length = 203
Score = 154 bits (390), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 115/183 (62%), Gaps = 11/183 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RIV++G P+ V LV+A+L++L+ DP +YLYINS G G
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------G 78
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDT+ +KC+V T+ VG A MA +LLAAG KGKR+ +P+A+IMI QP +
Sbjct: 79 SVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGA 138
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G PA DV I +E + +D L ++L+KHTG E + K R + M + AKE+G++D
Sbjct: 139 EG--PAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVD 196
Query: 292 KVL 294
KV+
Sbjct: 197 KVV 199
>sp|A5IJ91|CLPP_THEP1 ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=clpP PE=3 SV=1
Length = 203
Score = 154 bits (390), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 115/183 (62%), Gaps = 11/183 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RIV++G P+ V LV+A+L++L+ DP +YLYINS G G
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------G 78
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDT+ +KC+V T+ VG A MA +LLAAG KGKR+ +P+A+IMI QP +
Sbjct: 79 SVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGA 138
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G PA DV I +E + +D L ++L+KHTG E + K R + M + AKE+G++D
Sbjct: 139 EG--PAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVD 196
Query: 292 KVL 294
KV+
Sbjct: 197 KVV 199
>sp|Q9WZF9|CLPP_THEMA ATP-dependent Clp protease proteolytic subunit OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=clpP PE=3 SV=1
Length = 203
Score = 154 bits (390), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 115/183 (62%), Gaps = 11/183 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RIV++G P+ V LV+A+L++L+ DP +YLYINS G G
Sbjct: 28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------G 78
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDT+ +KC+V T+ VG A MA +LLAAG KGKR+ +P+A+IMI QP +
Sbjct: 79 SVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGA 138
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G PA DV I +E + +D L ++L+KHTG E + K R + M + AKE+G++D
Sbjct: 139 EG--PAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVD 196
Query: 292 KVL 294
KV+
Sbjct: 197 KVV 199
>sp|B5YI38|CLPP_THEYD ATP-dependent Clp protease proteolytic subunit
OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=clpP PE=3 SV=1
Length = 195
Score = 150 bits (380), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 114/183 (62%), Gaps = 11/183 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI++IG + V +V+A+L++LQ DP+ I++YINS G G
Sbjct: 19 DIYSRLLKDRIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHIYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
M S G AIYDT+ +K ++ T +G A MAC+LLAAGTKGKRF +PH+++MI QP
Sbjct: 70 MVSSGLAIYDTMQYVKPDIATYCIGQASSMACVLLAAGTKGKRFALPHSRVMIHQPIGGF 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+DV I AKE + +D L +LAKHTG E + K R + M + AK +G++D
Sbjct: 130 YG--QATDVEIHAKEILKMKDLLNNILAKHTGQPIEKIQKDTERDFFMSAEEAKLYGIVD 187
Query: 292 KVL 294
+V+
Sbjct: 188 EVI 190
>sp|Q3AF96|CLPP_CARHZ ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3
SV=1
Length = 195
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 113/183 (61%), Gaps = 11/183 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL R ++IG P+ V LV+A++++L+ DP+ I+LYINS G G
Sbjct: 20 DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPG---------G 70
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ + G AIYDT+ +K +V T+ +G A M LLAAG KGKRF +P+A+IMI QP
Sbjct: 71 VITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGV 130
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I A+E + RD L +LL KHTG +E + + R + M + AKE+G+ID
Sbjct: 131 QG--QATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIID 188
Query: 292 KVL 294
+V+
Sbjct: 189 EVI 191
>sp|Q2JIP1|CLPP2_SYNJB ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain JA-2-3B'a(2-13)) GN=clpP2 PE=3 SV=1
Length = 200
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 23/221 (10%)
Query: 86 PTLMASPAQVERSASYNEHRPDTPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQ 145
PT++ A+ ER+ D+ S LL RI+++G + + L+VA+++YL+
Sbjct: 3 PTVIEQSARGERAF------------DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLE 50
Query: 146 WMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLL 205
DP+ IYLYINS G G G AIYDT+ ++ +V T+ +G A M L
Sbjct: 51 SEDPEKDIYLYINSPG---------GSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFL 101
Query: 206 LAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNS 265
LA GTKGKR +PHA+IMI QP + G PA+D+ I+AKE + +++L LLA HTG
Sbjct: 102 LAGGTKGKRIALPHARIMIHQPLGGAQG--PATDIEIQAKEILFIKNSLNSLLAYHTGQP 159
Query: 266 EEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRGQETIMAEVA 306
E + + R M +AKE+G+ID+V+ + + +A V+
Sbjct: 160 LERIERDTDRDNFMTPEQAKEYGLIDQVISKRPQPTLAAVS 200
>sp|Q2JV68|CLPP2_SYNJA ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1
Length = 200
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 120/211 (56%), Gaps = 23/211 (10%)
Query: 86 PTLMASPAQVERSASYNEHRPDTPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQ 145
PT++ A+ ER+ D+ S LL RI+++G + + L+VA+++YL+
Sbjct: 3 PTVIEQSARGERAF------------DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLE 50
Query: 146 WMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLL 205
DP+ IYLYINS G G G AIYDT+ ++ +V T+ +G A M L
Sbjct: 51 SEDPEKDIYLYINSPG---------GSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFL 101
Query: 206 LAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNS 265
LA G KGKR +PHA+IMI QP + G PA+D+ I+AKE + +++L LLA HTG
Sbjct: 102 LAGGAKGKRIALPHARIMIHQPLGGAQG--PATDIEIQAKEILFIKNSLNSLLAYHTGQP 159
Query: 266 EEFVTKTIRRPYHMDSRRAKEFGVIDKVLWR 296
E + + R M +AKE+G+ID+V+ R
Sbjct: 160 LERIERDTDRDNFMTPEQAKEYGLIDQVITR 190
>sp|O67357|CLPP_AQUAE ATP-dependent Clp protease proteolytic subunit OS=Aquifex aeolicus
(strain VF5) GN=clpP PE=3 SV=1
Length = 201
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 112/185 (60%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RIV +G P+ V L+VA+L++L+ DP IYLYINS G G
Sbjct: 26 DIYSRLLQDRIVLLGSPIDDHVANLIVAQLLFLESQDPDKDIYLYINSPG---------G 76
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDT+ +K +V T+ +G A M +LLAAG GKR+ +PH++IMI QP
Sbjct: 77 SVTAGLAIYDTMQYIKPDVVTICMGQAASMGAILLAAGAPGKRYALPHSRIMIHQPLGGI 136
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D++I A+E ++ L+ +LAKHTG ++ + I R Y M AK++G+ID
Sbjct: 137 QG--QATDIIIHAEEIKRIKEMLIDILAKHTGQPKDKIANDIERDYFMSPYEAKDYGLID 194
Query: 292 KVLWR 296
KV+ +
Sbjct: 195 KVIEK 199
>sp|Q9K888|CLPP2_BACHD ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=clpP2 PE=3 SV=1
Length = 194
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 111/183 (60%), Gaps = 11/183 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RIV++G + + +VA+L++L+ +PK IYLYINS G G
Sbjct: 20 DIYSRLLKDRIVFLGAAIDDQIANSIVAQLLFLEAENPKKDIYLYINSPG---------G 70
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
S GFAIYDT+ +K +HT+ G A A +LL AGTKGKRF +P+++IMI QP +
Sbjct: 71 STSAGFAIYDTMQFVKPSIHTICTGMAASFAAILLLAGTKGKRFALPNSEIMIHQPSGGA 130
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G ASD+ I AK + R+ LV + ++ TG S E V K + R Y M + A E+G++D
Sbjct: 131 QG--QASDLAITAKRILGIREKLVTVTSERTGQSPEKVAKDMDRDYFMSAEEALEYGIVD 188
Query: 292 KVL 294
+++
Sbjct: 189 QII 191
>sp|Q3A3X5|CLPP_PELCD ATP-dependent Clp protease proteolytic subunit OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=clpP PE=3
SV=1
Length = 194
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 113/185 (61%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++G + V L++A++++L+ DP+ I+LYINS G G
Sbjct: 19 DIFSRLLKDRIIFLGGAVDDQVANLIIAQMLFLESEDPEKEIFLYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ + G AIYDT+ ++C V T+ VG A M +LLAAG +GKRF +PHA+IMI QP
Sbjct: 70 VVTAGMAIYDTMQYVRCPVSTLCVGQAASMGAVLLAAGGEGKRFALPHARIMIHQPWGGF 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I A+E + R+TL +LA HTG + E + R + M S AK++G++D
Sbjct: 130 QG--QATDINIHAQEILRLRETLNGVLASHTGQTLEKIATDTERDFFMGSEEAKKYGIVD 187
Query: 292 KVLWR 296
++ R
Sbjct: 188 DIVKR 192
>sp|Q5FUR3|CLPP1_GLUOX ATP-dependent Clp protease proteolytic subunit 1 OS=Gluconobacter
oxydans (strain 621H) GN=clpP1 PE=3 SV=1
Length = 215
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 113/185 (61%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++ P+ V+ L+ A+L+YL+ ++P I YINS G G
Sbjct: 32 DIFSRLLQERIIFLTGPVYDQVSSLICAQLLYLESVNPTKEISFYINSPG---------G 82
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ S G AIYDT+ ++C V TV +G A M LLLA G KG R+ +P+A++M+ QP +
Sbjct: 83 VVSAGLAIYDTMQYIRCPVSTVCIGQAASMGSLLLAGGEKGHRYALPNARVMVHQPSGGA 142
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G ASD+ I+A+E ++ R L ++ +HTG + E + + + R ++ + A+EFG+ID
Sbjct: 143 QG--QASDIEIQAREILIIRQRLNEIYREHTGQTLEQIEQKLERDSYLSANEAREFGLID 200
Query: 292 KVLWR 296
KV+ R
Sbjct: 201 KVVER 205
>sp|C0QGT0|CLPP_DESAH ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium
autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2)
GN=clpP PE=3 SV=1
Length = 205
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 117/195 (60%), Gaps = 11/195 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++G + V L+VA+L++L+ DP+ I YINS G G
Sbjct: 19 DIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDINFYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ + G A+YDT+ +K +V TV +G A M LLLAAG KGKRF +P+++IMI QP +
Sbjct: 70 VVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIMIHQPLGGA 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G ASD+ I+A E + ++ L +L+KHTG + + +++ R + M +AKE+G++D
Sbjct: 130 QG--QASDIKIQANEILRMKEVLSGILSKHTGQNFDKISEDTDRDFFMSGDQAKEYGLVD 187
Query: 292 KVLWRGQETIMAEVA 306
V+ E AE A
Sbjct: 188 HVVASRDELEKAEAA 202
>sp|O30612|CLPP2_MYXXD ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus
xanthus (strain DK 1622) GN=clpP2 PE=3 SV=1
Length = 203
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 112/185 (60%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
DL S LL RI+ +G P+ V ++VA+L++L+ DP I LYINS G G
Sbjct: 18 DLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPG---------G 68
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDT+ +KC V T+ VG A M LLL AG KGKR+ +P+++IMI QP +
Sbjct: 69 SVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGA 128
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I+AKE + R + L+ KHTG++ E + K R Y M + A+++G+ID
Sbjct: 129 QG--QATDIDIQAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFMSAEDARQYGLID 186
Query: 292 KVLWR 296
+V+ +
Sbjct: 187 EVVEK 191
>sp|B0K533|CLPP_THEPX ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3
SV=1
Length = 195
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 112/187 (59%), Gaps = 11/187 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RIV++G + LV+A+L++L+ DP I+LYINS G G
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ GFAIYDT+ +K +V T+ VG A MA LLAAG KGKRF +P+++IMI QP
Sbjct: 70 SITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGM 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I A+ + RD L K+LA++TG E + R + MD+ AK +G+ID
Sbjct: 130 QG--QATDIKIHAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDAKAYGIID 187
Query: 292 KVLWRGQ 298
+VL R +
Sbjct: 188 EVLIRNK 194
>sp|B0KBA4|CLPP_THEP3 ATP-dependent Clp protease proteolytic subunit
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=clpP PE=3 SV=1
Length = 195
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 112/187 (59%), Gaps = 11/187 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RIV++G + LV+A+L++L+ DP I+LYINS G G
Sbjct: 19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ GFAIYDT+ +K +V T+ VG A MA LLAAG KGKRF +P+++IMI QP
Sbjct: 70 SITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGM 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I A+ + RD L K+LA++TG E + R + MD+ AK +G+ID
Sbjct: 130 QG--QATDIKIHAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDAKAYGIID 187
Query: 292 KVLWRGQ 298
+VL R +
Sbjct: 188 EVLIRNK 194
>sp|A6Q1C1|CLPP_NITSB ATP-dependent Clp protease proteolytic subunit OS=Nitratiruptor sp.
(strain SB155-2) GN=clpP PE=3 SV=1
Length = 196
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 114/185 (61%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+ + + AV +VA+L++L+ DP IYLYINS G G
Sbjct: 20 DIYSRLLKDRIIMLSGEINDAVASSIVAQLLFLEAEDPDKDIYLYINSPG---------G 70
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ + G +IYDT+ +K +V T+ +G A M LL++GTKGKR+ +PHA+IMI QP +
Sbjct: 71 VITSGMSIYDTMNYIKPDVSTICIGQAASMGAFLLSSGTKGKRYALPHARIMIHQPLGGA 130
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I+AKE + + L ++LA++TG S + + K R + M S AKE+G+ID
Sbjct: 131 QG--QATDIEIQAKEILRLKKILNEILAENTGQSVKKIAKDTERDFFMSSEEAKEYGLID 188
Query: 292 KVLWR 296
+VL +
Sbjct: 189 QVLEK 193
>sp|B2A158|CLPP_NATTJ ATP-dependent Clp protease proteolytic subunit OS=Natranaerobius
thermophilus (strain ATCC BAA-1301 / DSM 18059 /
JW/NM-WN-LF) GN=clpP PE=3 SV=1
Length = 197
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 111/185 (60%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI++IG + + V+A++++L+ DP I+LYINS G G
Sbjct: 19 DIYSRLLKDRIIFIGTGINDDIANSVIAQMLFLESEDPDKDIHLYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
G AIYDT+ ++ +V T+ VG A M +LLAAG +GKRF +P+++IM+ QP +
Sbjct: 70 HVHAGLAIYDTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRIMLHQPMGGA 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+DV I A+E M ++ L ++LA HTG E ++K R + M S A+++GVID
Sbjct: 130 QG--QAADVEIHAREIMKTKERLNQILAHHTGQPVEQISKDTDRDFFMSSEEAQKYGVID 187
Query: 292 KVLWR 296
VL R
Sbjct: 188 DVLKR 192
>sp|Q5SKM8|CLPP_THET8 ATP-dependent Clp protease proteolytic subunit OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpP
PE=3 SV=1
Length = 194
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 112/185 (60%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++G P+ V +VVA+L++L +P I LYINS G D
Sbjct: 18 DIYSRLLKDRIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKLYINSPGGEVD------ 71
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
G AIYDT+ ++ V T+ +G A MA ++LAAG KG+R+ +PHAK+MI QP
Sbjct: 72 ---AGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGV 128
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G ASD+ I+A+E + + L ++LAKHTG E V K R Y++ ++ A E+G+ID
Sbjct: 129 RG--TASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALEYGLID 186
Query: 292 KVLWR 296
+V+ R
Sbjct: 187 QVVTR 191
>sp|Q72L15|CLPP_THET2 ATP-dependent Clp protease proteolytic subunit OS=Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
GN=clpP PE=3 SV=2
Length = 194
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 112/185 (60%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++G P+ V +VVA+L++L +P I LYINS G D
Sbjct: 18 DIYSRLLKDRIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKLYINSPGGEVD------ 71
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
G AIYDT+ ++ V T+ +G A MA ++LAAG KG+R+ +PHAK+MI QP
Sbjct: 72 ---AGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGV 128
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G ASD+ I+A+E + + L ++LAKHTG E V K R Y++ ++ A E+G+ID
Sbjct: 129 RG--TASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALEYGLID 186
Query: 292 KVLWR 296
+V+ R
Sbjct: 187 QVVTR 191
>sp|Q0AWF0|CLPP_SYNWW ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas
wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3
SV=1
Length = 200
Score = 138 bits (347), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 111/183 (60%), Gaps = 11/183 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++G + V LV+A+L++L+ DP I LYINS G G
Sbjct: 20 DIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPG---------G 70
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDTL ++ +V T+ VG A M LLAAG KGKR+ +P+A+IMI QP +
Sbjct: 71 SITAGMAIYDTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGT 130
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I A+ M +++L K+LA+ TG E + K R Y M ++ AKE+G+ID
Sbjct: 131 QG--QATDIEIHARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFMTAQEAKEYGIID 188
Query: 292 KVL 294
+V+
Sbjct: 189 EVI 191
>sp|Q8D346|CLPP_WIGBR ATP-dependent Clp protease proteolytic subunit OS=Wigglesworthia
glossinidia brevipalpis GN=clpP PE=3 SV=1
Length = 194
Score = 137 bits (346), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 120/209 (57%), Gaps = 23/209 (11%)
Query: 86 PTLMASPAQVERSASYNEHRPDTPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQ 145
PT++ A+ ERS D+ S LL RI+++ + + L++A++++L+
Sbjct: 5 PTVVEKNARGERSY------------DIFSRLLKERIIFVTGKIEDYMANLIIAQMIFLE 52
Query: 146 WMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLL 205
DP+ I+LYINS G G+ + G +IYDT+ +KCEV T+ +G + MA L+
Sbjct: 53 SEDPEKDIFLYINSPG---------GVVTSGMSIYDTMQFIKCEVSTLCIGQSSSMAALI 103
Query: 206 LAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNS 265
LA+G KGKRF +P+A+IMI QP S G A+D+ I E + + +++LL+KHTG S
Sbjct: 104 LASGEKGKRFSLPNARIMIHQPLGGSQG--QATDIAIHTTEILKIKKCMIELLSKHTGQS 161
Query: 266 EEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
E ++K R A +G+IDKV+
Sbjct: 162 AEIISKDTERDRFFSGSEAVIYGLIDKVI 190
>sp|Q8RHJ8|CLPP_FUSNN ATP-dependent Clp protease proteolytic subunit OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=clpP PE=3 SV=1
Length = 193
Score = 137 bits (346), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 121/213 (56%), Gaps = 23/213 (10%)
Query: 85 SPTLMASPAQVERSASYNEHRPDTPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYL 144
+PT++ + + ER+ D+ S LL RI+++G + V ++A+L+YL
Sbjct: 3 NPTVIDNNGKSERAY------------DIYSRLLKDRIIFVGTAIDETVANSIIAQLLYL 50
Query: 145 QWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACL 204
+ DP+ I +YINS G G ++G AIYDT+ +K +V TV VG A M
Sbjct: 51 EAEDPEKDIIMYINSPG---------GSVTDGMAIYDTMNYIKPDVQTVCVGQAASMGAF 101
Query: 205 LLAAGTKGKRFMMPHAKIMIQQPRLPSSGLL-PASDVLIRAKEAMVNRDTLVKLLAKHTG 263
LLAAG KGKRF + +++IMI QP L S GL A+D+ I A E + +D L +LLAK+TG
Sbjct: 102 LLAAGAKGKRFALENSRIMIHQP-LISGGLKGQATDISIHANELLKIKDRLAELLAKNTG 160
Query: 264 NSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWR 296
++E + + R ++ S A +G+ID V R
Sbjct: 161 KTKEQILRDTERDNYLSSEEAVNYGLIDSVFRR 193
>sp|P54416|CLPP1_SYNY3 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=clpP1 PE=3 SV=1
Length = 198
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 111/185 (60%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RIV++G + LVVA+L++L+ DP+ IYLYINS G G
Sbjct: 17 DIYSRLLRERIVFLGQEVRDENANLVVAQLLFLEAEDPEKDIYLYINSPG---------G 67
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
S G I+DT+ Q++ +V T+ +G A M LL+AG KGKR +P+++IMI QP +
Sbjct: 68 SVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMIHQPLGGA 127
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I+AKE + + L + LA HTG S E +T R + M + +KE+G+ID
Sbjct: 128 QG--QATDIEIQAKEILYLKALLNQHLANHTGKSLEEITADTERDFFMSAEESKEYGLID 185
Query: 292 KVLWR 296
+V+ R
Sbjct: 186 QVINR 190
>sp|Q7NEW1|CLPP2_GLOVI ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter
violaceus (strain PCC 7421) GN=clpP2 PE=3 SV=1
Length = 218
Score = 137 bits (345), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 110/174 (63%), Gaps = 9/174 (5%)
Query: 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY 180
RIVY+G P+ V EL++A+L+YL+ D PI +YINS G G E+ FA+Y
Sbjct: 37 RIVYLGTPINDVVAELLIAQLLYLESEDNAKPIEIYINSPGVA-------GFETSAFAVY 89
Query: 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDV 240
DT+ ++ + T+ +G A G + LL+AAGTKG+R +P+++I++ QP + G A+D+
Sbjct: 90 DTMRHVRMPIKTICLGLAGGFSALLMAAGTKGQRMSLPNSRIILYQPYGGARG--QATDI 147
Query: 241 LIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVL 294
IRA+E + + TL +LL+ HTG + E + K R ++M + A +G+IDKVL
Sbjct: 148 NIRAQELLTTKRTLNQLLSIHTGKTVEQIDKDTERLFYMSPQEAVSYGLIDKVL 201
>sp|P74467|CLPP3_SYNY3 Probable ATP-dependent Clp protease proteolytic subunit 3
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpP3
PE=3 SV=1
Length = 202
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 108/183 (59%), Gaps = 10/183 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ + L RI+++G + ++ +VA L+YL DP PIYLYINS G G
Sbjct: 22 DIYTRLSQERIIFLGQEVNDSIANRIVAFLLYLDSDDPSKPIYLYINSPG---------G 72
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDT+ +K EV T+ VG A M LLA+G GKR +PHA+IMI QP +
Sbjct: 73 SVTAGMAIYDTMQYIKAEVITICVGLAASMGAFLLASGAPGKRLALPHARIMIHQP-MGG 131
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
+G A+D+ I A+E + R L +++A+ TG + E + K R Y + + AKE+G+ID
Sbjct: 132 TGRRQATDIDIEAREILRIRQQLNEIMAQRTGQTVEKIAKDTDRDYFLSAAEAKEYGLID 191
Query: 292 KVL 294
KV+
Sbjct: 192 KVI 194
>sp|A5D447|CLPP_PELTS ATP-dependent Clp protease proteolytic subunit OS=Pelotomaculum
thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=clpP PE=3 SV=1
Length = 194
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 111/182 (60%), Gaps = 11/182 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++G P+ L++A++++L+ DP+ I YINS G G
Sbjct: 19 DIYSRLLKDRIIFLGGPIDDNTANLIIAQMLFLEAEDPEKDIQFYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ + G AIYDT+ ++ V T+ +G A MA LLLAAG KGKR+ +P+A+I+I QP
Sbjct: 70 VVTAGMAIYDTMQYVRSPVATICIGQAASMASLLLAAGAKGKRYSLPYARILIHQPLGGV 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I AKE + R L ++L++HTG E + + R Y M ++ AKE+G+ID
Sbjct: 130 QG--QATDIEIHAKEILRMRQFLNEILSRHTGQPIEKIARDTERDYFMSAQEAKEYGIID 187
Query: 292 KV 293
+V
Sbjct: 188 EV 189
>sp|B8I8F5|CLPP_CLOCE ATP-dependent Clp protease proteolytic subunit OS=Clostridium
cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584
/ H10) GN=clpP PE=3 SV=1
Length = 194
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 108/185 (58%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL+ RI+ + + A L+VA+++YL+ DP I YINS G G
Sbjct: 19 DIFSRLLNDRIIVLSDEVNDATASLIVAQMLYLEAQDPDKDIQFYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ GFAIYDT+ +KC+V T+ +G A M LLAAG KGKRF +P+++IMI QP +
Sbjct: 70 SVASGFAIYDTMQYVKCDVSTICMGMAASMGAFLLAAGEKGKRFALPNSEIMIHQPLGGA 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I A+ + RD L K+L++ TG + + K R + M + AK +G+ID
Sbjct: 130 RG--QATDIKIHAENILRTRDKLNKILSERTGQPLDKIEKDTERDFFMSADEAKAYGIID 187
Query: 292 KVLWR 296
++ R
Sbjct: 188 DIMVR 192
>sp|Q4FQB9|CLPP_PSYA2 ATP-dependent Clp protease proteolytic subunit OS=Psychrobacter
arcticus (strain DSM 17307 / 273-4) GN=clpP PE=3 SV=1
Length = 225
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 113/185 (61%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL R++++ + + L+VA+L++L+ +P I+LYINS G G
Sbjct: 47 DIFSRLLRERVIFLTGQVEDHMANLIVAQLLFLEAENPDKDIHLYINSPG---------G 97
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
S G AI+DT+ +K EV T+ +G A M LLAAG KGKR+ + +A++MI QP +
Sbjct: 98 SVSAGLAIFDTMNFIKPEVSTICMGGAYSMGSFLLAAGQKGKRYALANARVMIHQPSGGA 157
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I A+E + R L ++LA+ TG S E + K + R Y +D++ AKE+G+ID
Sbjct: 158 QG--QATDIEINAREILKTRARLNEILAERTGQSVEKIEKDVERDYWLDAKEAKEYGLID 215
Query: 292 KVLWR 296
+VL R
Sbjct: 216 EVLER 220
>sp|A8ZXB7|CLPP_DESOH ATP-dependent Clp protease proteolytic subunit OS=Desulfococcus
oleovorans (strain DSM 6200 / Hxd3) GN=clpP PE=3 SV=1
Length = 205
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 105/183 (57%), Gaps = 11/183 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RIV+IG + L++A+L++L+ DP I YINS G G
Sbjct: 19 DIYSRLLKDRIVFIGSAIDDETANLLIAQLLFLESEDPDKDINFYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
S G AIYDT+ +K ++ TV +G A M LLAAG KGKRF +P+++IMI QP +
Sbjct: 70 KVSAGMAIYDTMQYIKSDIATVCIGHAASMGAFLLAAGAKGKRFSLPNSRIMIHQPMGGA 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G ASD+ I+AKE + +D L ++LA HTG E + R + M AK +G++D
Sbjct: 130 QG--QASDIAIQAKEILRMKDILNQILAHHTGKPLEQIQVDTDRDFFMSGEEAKAYGIVD 187
Query: 292 KVL 294
V+
Sbjct: 188 HVI 190
>sp|Q93AD7|CLPP_CYAP8 ATP-dependent Clp protease proteolytic subunit OS=Cyanothece sp.
(strain PCC 8801) GN=clpP PE=3 SV=1
Length = 199
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 106/183 (57%), Gaps = 10/183 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ + L RI+++G + + +VA L+YL DP PIYLYINS G G
Sbjct: 22 DIYTRLSQERIIFLGQEVTDGLANRIVAFLLYLDSEDPGKPIYLYINSPG---------G 72
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDT+ +K +V T+ VG A M LLA+GT GKR +PHA+IMI QP +
Sbjct: 73 SVTAGMAIYDTMQYIKSDVITICVGLAASMGAFLLASGTPGKRLALPHARIMIHQP-MGG 131
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
+G A+D+ I A E + R L ++LA TG + E + K R Y+M + A+ +G+ID
Sbjct: 132 TGRRQATDIQIEANEILRIRQQLNEILAHKTGQTIEKIQKDTDRDYYMSAEEAQAYGLID 191
Query: 292 KVL 294
KV+
Sbjct: 192 KVI 194
>sp|A0LEF1|CLPP_SYNFM ATP-dependent Clp protease proteolytic subunit OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=clpP PE=3 SV=1
Length = 202
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 109/183 (59%), Gaps = 11/183 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++G + V +++A+L++L+ DP I+ YINS G G
Sbjct: 19 DIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHFYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ + G AIYDT+ +K V T+ +G A MA +LLAAG KGKR+ +PH +IM+ QP
Sbjct: 70 LVTAGLAIYDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRIMLHQPMGGF 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+DV I+AKE + R+ L +L +HTG E + + R ++M +A+E+G++D
Sbjct: 130 QG--QATDVEIQAKEILKLREELNDILVRHTGRPVEQIQRDTDRDFYMSGEQAREYGMVD 187
Query: 292 KVL 294
+
Sbjct: 188 HIF 190
>sp|Q24S49|CLPP2_DESHY ATP-dependent Clp protease proteolytic subunit 2
OS=Desulfitobacterium hafniense (strain Y51) GN=clpP2
PE=3 SV=1
Length = 202
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 113/186 (60%), Gaps = 10/186 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++G P+ V LVVA++++L+ DP+ I+LYINS G G
Sbjct: 20 DIYSRLLKDRIIFLGGPVTDDVANLVVAQMLFLEAEDPEKDIFLYINSPG---------G 70
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
S G AIYDT+ ++ +VHT+ VG A M LL AG KGKR +P+A+I+I QP +
Sbjct: 71 SISAGMAIYDTMQYIRADVHTICVGLAASMGAFLLTAGAKGKRQALPNAEILIHQPLIGG 130
Query: 232 SGLL-PASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVI 290
G+ A+++ I AK + ++ + ++LA+ TG + E + R +M + AKE+G+I
Sbjct: 131 GGISGQATEIEIHAKHLLRVKERMNRILAERTGQTIERIEADTDRDRYMTAEEAKEYGLI 190
Query: 291 DKVLWR 296
D+VL +
Sbjct: 191 DEVLEK 196
>sp|B5EI27|CLPP_GEOBB ATP-dependent Clp protease proteolytic subunit OS=Geobacter
bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
GN=clpP PE=3 SV=1
Length = 199
Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 106/185 (57%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++G + V LV+A+L++L+ DP I+LYINS G G
Sbjct: 18 DIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPG---------G 68
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ + G AIYDT+ +K V T+ VG A M LL+ G KGKR+ + +++IMI QP
Sbjct: 69 VVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGF 128
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I AKE + +D L LLA+HTG S E V R Y M AK +G+ID
Sbjct: 129 QG--QATDIHIHAKEILRMKDQLNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIID 186
Query: 292 KVLWR 296
++ R
Sbjct: 187 AIVTR 191
>sp|A6TM61|CLPP_ALKMQ ATP-dependent Clp protease proteolytic subunit OS=Alkaliphilus
metalliredigens (strain QYMF) GN=clpP PE=3 SV=1
Length = 194
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 109/183 (59%), Gaps = 11/183 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++G + L+VA+L++L+ DP I +YINS G G
Sbjct: 19 DIFSRLLKERIIFLGDEINDVTASLLVAQLLFLEAEDPDKDIQIYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDT+ +K +V T+ VG A M LLAAG KGKRF +P+A++MI QP +
Sbjct: 70 SITAGMAIYDTMNYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGT 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A D+ I A+ + RDTL K+L + TG E V K R + M+++ AKE+G+ID
Sbjct: 130 RG--QAEDIRIHAERIVKLRDTLNKILVERTGQPLERVQKDTDRDFFMEAKEAKEYGIID 187
Query: 292 KVL 294
+V+
Sbjct: 188 EVI 190
>sp|A4J7L9|CLPP_DESRM ATP-dependent Clp protease proteolytic subunit OS=Desulfotomaculum
reducens (strain MI-1) GN=clpP PE=3 SV=1
Length = 195
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 108/183 (59%), Gaps = 11/183 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI++IG P+ + LV+A+ ++L+ DP+ I+LYINS G G
Sbjct: 20 DIYSRLLKDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHLYINSPG---------G 70
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ + G AIYDT+ +K V T+ +G A M LLAAG GKR+ +P A+IMI QP
Sbjct: 71 VVTAGLAIYDTMQYIKPAVSTICLGQAASMGSFLLAAGAPGKRYALPMARIMIHQPLGGV 130
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I AKE + +D L LA HTG E +T+ R Y M + AK++G+ID
Sbjct: 131 QG--QATDIDIHAKEILRMKDLLNDRLAHHTGQPLEQITRDTERDYFMSAEEAKKYGLID 188
Query: 292 KVL 294
+V+
Sbjct: 189 EVM 191
>sp|C6E2T0|CLPP_GEOSM ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp.
(strain M21) GN=clpP PE=3 SV=1
Length = 199
Score = 134 bits (338), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 106/185 (57%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++G + V LV+A+L++L+ DP I+LYINS G G
Sbjct: 18 DIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPG---------G 68
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ + G AIYDT+ +K V T+ VG A M LL+ G KGKR+ + +++IMI QP
Sbjct: 69 VVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGF 128
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I AKE + +D L LLA+HTG S E V R Y M AK +G+ID
Sbjct: 129 QG--QATDIHIHAKEILRMKDELNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIID 186
Query: 292 KVLWR 296
++ R
Sbjct: 187 AIVTR 191
>sp|Q9X5N0|CLPP2_MYXXA ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus
xanthus GN=clpP2 PE=3 SV=1
Length = 206
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 106/182 (58%), Gaps = 11/182 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RIV +G + V ++VA+L++L+ DP I LYINS G G
Sbjct: 21 DIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG---------G 71
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDT+ +KC V T+ VG A M +LL AG KGKR+ +P ++IMI QP
Sbjct: 72 SVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGV 131
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I+AKE + + L +L+ KHTG S E V K R Y M + AK +G+ID
Sbjct: 132 RG--QATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIID 189
Query: 292 KV 293
++
Sbjct: 190 EI 191
>sp|Q4L4J5|CLPP_STAHJ ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=clpP PE=3 SV=1
Length = 195
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 107/184 (58%), Gaps = 11/184 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+ +G + V +V++L++LQ D + IYLYINS G G
Sbjct: 19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ GFAIYDT+ +K +V T+ +G A M LLAAG KGKRF +P+A++MI QP +
Sbjct: 70 SVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGA 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+++ I A + R+ L K+LA+ TG S E + K R + + AKE+G+ID
Sbjct: 130 QG--QATEIEIAANHILKTREKLNKILAERTGQSIEKIQKDTDRDNFLTADEAKEYGLID 187
Query: 292 KVLW 295
V+
Sbjct: 188 NVMQ 191
>sp|A4ISQ2|CLPP_GEOTN ATP-dependent Clp protease proteolytic subunit OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=clpP PE=3 SV=1
Length = 196
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 112/185 (60%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++G P+ V +V++L++L DP+ I LYINS G G
Sbjct: 19 DIYSRLLKDRIIFLGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDT+ +K +V T+ +G A M LLAAG KGKRF +P++++MI QP +
Sbjct: 70 SITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGA 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+++ I AK + RD L ++LA++TG E + + R M +++A+E+G+ID
Sbjct: 130 QG--QATEIEIAAKRILFLRDKLNRILAENTGQPIEVIERDTDRDNFMTAQKAQEYGIID 187
Query: 292 KVLWR 296
+VL R
Sbjct: 188 RVLTR 192
>sp|Q1DAT0|CLPP1_MYXXD ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus
xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1
Length = 206
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 106/182 (58%), Gaps = 11/182 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RIV +G + V ++VA+L++L+ DP I LYINS G G
Sbjct: 21 DIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG---------G 71
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDT+ +KC V T+ VG A M +LL AG KGKR+ +P ++IMI QP
Sbjct: 72 SVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGV 131
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I+AKE + + L +L+ KHTG S E V K R Y M + AK +G+ID
Sbjct: 132 RG--QATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIID 189
Query: 292 KV 293
++
Sbjct: 190 EI 191
>sp|Q5KVD9|CLPP_GEOKA ATP-dependent Clp protease proteolytic subunit OS=Geobacillus
kaustophilus (strain HTA426) GN=clpP PE=3 SV=1
Length = 196
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 111/188 (59%), Gaps = 11/188 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RIV++G P+ V +V++L++L DP I LYINS G G
Sbjct: 19 DIYSRLLKDRIVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISLYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDT+ +K +V T+ +G A M LLAAG KGKRF +P+++IMI QP +
Sbjct: 70 SITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGA 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+++ I AK + RD L ++L+++TG E + + R M +++A E+G+ID
Sbjct: 130 QG--QATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQKAMEYGIID 187
Query: 292 KVLWRGQE 299
+VL R E
Sbjct: 188 RVLTRADE 195
>sp|B3E1Z4|CLPP_GEOLS ATP-dependent Clp protease proteolytic subunit OS=Geobacter lovleyi
(strain ATCC BAA-1151 / DSM 17278 / SZ) GN=clpP PE=3
SV=1
Length = 197
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 111/185 (60%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RIV++G + V +LV+A+L++L+ DP I+LYINS G G
Sbjct: 18 DIYSRLLKERIVFLGGEINDQVADLVIAQLLFLEAEDPDKDIHLYINSPG---------G 68
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ + G AI+DT+ +K V T+ +G A M +LL AG KGKRF +PHA+IMI QP S
Sbjct: 69 VVTAGMAIFDTMNYIKAPVSTICIGQAASMGAVLLTAGEKGKRFALPHARIMIHQPSGGS 128
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D++I+A+E + + L +LLA +G E + + R + M + A+ +G+ID
Sbjct: 129 RG--QATDIMIQAEEILRMKRELNRLLADLSGQPVERLEQDTERDFFMSAEEARNYGLID 186
Query: 292 KVLWR 296
V+ R
Sbjct: 187 AVMTR 191
>sp|Q8KC73|CLPP_CHLTE ATP-dependent Clp protease proteolytic subunit OS=Chlorobium
tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=clpP
PE=3 SV=1
Length = 225
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 108/185 (58%), Gaps = 11/185 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++G P+ V L++A+L++L+ DP+ IY+YINS G G
Sbjct: 44 DIFSRLLRERIIFLGSPIDEHVAGLIIAQLIFLESEDPERDIYIYINSPG---------G 94
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
S G IYDT+ ++ ++ TV VG A M LLA+GT GKR +PH++IMI QP +
Sbjct: 95 SVSAGLGIYDTMQYIRPDISTVCVGMAASMGAFLLASGTSGKRASLPHSRIMIHQPSGGA 154
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G +D+LI+A+E R L LLAKHTG + + R M + AKE+G+ID
Sbjct: 155 QG--QETDILIQAREIEKIRHLLEDLLAKHTGQEVSRIREDSERDRWMSAVEAKEYGLID 212
Query: 292 KVLWR 296
++ +
Sbjct: 213 QIFEK 217
>sp|C5D7M9|CLPP_GEOSW ATP-dependent Clp protease proteolytic subunit OS=Geobacillus sp.
(strain WCH70) GN=clpP PE=3 SV=1
Length = 196
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 112/188 (59%), Gaps = 11/188 (5%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+ +G P+ V +V++L++L DP+ I LYINS G G
Sbjct: 19 DIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPG---------G 69
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ G AIYDT+ +K +V T+ +G A M LLAAG KGKRF +P+++IMI QP +
Sbjct: 70 SITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGA 129
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+++ I AK + RD L ++LA++TG E + + R M +++A+E+G+ID
Sbjct: 130 QG--QATEIEIAAKRILFLRDKLNRILAENTGQPVEVIERDTDRDNFMTAQKAQEYGIID 187
Query: 292 KVLWRGQE 299
+VL R E
Sbjct: 188 RVLTRIDE 195
>sp|Q4FM94|CLPP_PELUB ATP-dependent Clp protease proteolytic subunit OS=Pelagibacter
ubique (strain HTCC1062) GN=clpP PE=3 SV=1
Length = 203
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 107/183 (58%), Gaps = 11/183 (6%)
Query: 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG 171
D+ S LL RI+++ P+ V LV A+L++L+ DPK I LYINS G G
Sbjct: 28 DIYSRLLKERIIFLVGPINDNVASLVTAQLLFLESEDPKKEINLYINSPG---------G 78
Query: 172 MESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS 231
+ + G IYDT+ +K +V T+ +G A M LLAAG KGKRF +P+++IM+ QP
Sbjct: 79 LVTAGLGIYDTMQYIKPDVSTLCIGQAASMGSFLLAAGKKGKRFSLPNSRIMVHQPSAGF 138
Query: 232 SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVID 291
G A+D+ I A E + + L ++ +KHTG S + V K + R M AKEFG+ID
Sbjct: 139 QG--QATDIEIHANEVLALKKRLNEIYSKHTGKSVDDVKKALERDNFMTPDTAKEFGLID 196
Query: 292 KVL 294
+V+
Sbjct: 197 EVV 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,630,545
Number of Sequences: 539616
Number of extensions: 4873919
Number of successful extensions: 14544
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 12343
Number of HSP's gapped (non-prelim): 794
length of query: 313
length of database: 191,569,459
effective HSP length: 117
effective length of query: 196
effective length of database: 128,434,387
effective search space: 25173139852
effective search space used: 25173139852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)