Query 035798
Match_columns 313
No_of_seqs 209 out of 1471
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:31:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 8.4E-66 1.8E-70 475.2 18.6 204 90-309 66-270 (275)
2 PRK12552 ATP-dependent Clp pro 100.0 5.8E-64 1.3E-68 459.5 22.6 195 101-297 11-215 (222)
3 COG0740 ClpP Protease subunit 100.0 3.6E-64 7.8E-69 453.5 20.7 193 90-299 3-195 (200)
4 PRK14514 ATP-dependent Clp pro 100.0 9E-60 1.9E-64 431.8 21.7 191 90-297 30-220 (221)
5 PRK14513 ATP-dependent Clp pro 100.0 1.6E-59 3.5E-64 424.8 22.0 193 91-300 4-196 (201)
6 CHL00028 clpP ATP-dependent Cl 100.0 5.4E-58 1.2E-62 414.4 21.9 181 108-299 18-199 (200)
7 PRK12551 ATP-dependent Clp pro 100.0 9.8E-58 2.1E-62 411.7 21.2 178 109-297 14-191 (196)
8 TIGR00493 clpP ATP-dependent C 100.0 6.5E-53 1.4E-57 378.2 20.6 189 91-296 3-191 (191)
9 PRK14512 ATP-dependent Clp pro 100.0 3.1E-51 6.7E-56 369.4 20.8 183 106-299 9-191 (197)
10 PRK00277 clpP ATP-dependent Cl 100.0 1.6E-50 3.4E-55 364.9 21.5 180 109-299 20-199 (200)
11 PF00574 CLP_protease: Clp pro 100.0 9.6E-50 2.1E-54 351.1 13.9 178 109-297 5-182 (182)
12 PRK12553 ATP-dependent Clp pro 100.0 2.4E-48 5.1E-53 352.6 20.5 182 109-299 24-205 (207)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 4.6E-47 1E-51 333.4 17.2 171 112-293 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 2E-45 4.3E-50 321.3 18.9 162 121-293 1-162 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 100.0 4.3E-33 9.2E-38 240.7 17.5 156 122-293 2-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 100.0 6.4E-31 1.4E-35 233.2 16.9 161 122-300 3-169 (172)
17 cd00394 Clp_protease_like Case 100.0 1.3E-29 2.9E-34 217.9 16.9 161 122-293 1-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.9 1.1E-25 2.5E-30 200.2 17.6 161 122-297 3-166 (187)
19 cd07021 Clp_protease_NfeD_like 99.9 9.3E-23 2E-27 181.6 16.6 159 122-299 3-174 (178)
20 TIGR00706 SppA_dom signal pept 99.7 9E-17 2E-21 145.2 16.6 163 122-297 4-196 (207)
21 cd07023 S49_Sppa_N_C Signal pe 99.7 7.8E-17 1.7E-21 145.1 15.0 164 122-297 4-201 (208)
22 cd07014 S49_SppA Signal peptid 99.7 3.3E-16 7.1E-21 137.8 14.6 144 133-296 23-169 (177)
23 cd07022 S49_Sppa_36K_type Sign 99.7 3.5E-15 7.6E-20 135.4 16.1 153 132-297 25-207 (214)
24 TIGR00705 SppA_67K signal pept 99.6 2.8E-15 6E-20 154.7 16.6 163 122-296 312-511 (584)
25 cd07019 S49_SppA_1 Signal pept 99.6 3.3E-14 7.2E-19 128.9 16.5 164 122-297 4-204 (211)
26 COG0616 SppA Periplasmic serin 99.6 2.8E-14 6.1E-19 137.3 14.9 164 122-297 63-263 (317)
27 cd07018 S49_SppA_67K_type Sign 99.4 4E-12 8.6E-17 116.2 14.5 158 127-297 24-214 (222)
28 PRK10949 protease 4; Provision 99.4 5.4E-12 1.2E-16 131.3 16.3 164 122-297 330-530 (618)
29 PRK11778 putative inner membra 99.4 1.1E-11 2.5E-16 120.3 16.2 161 122-297 94-287 (330)
30 COG1030 NfeD Membrane-bound se 99.3 4.7E-11 1E-15 119.1 13.1 159 122-299 30-191 (436)
31 PF01972 SDH_sah: Serine dehyd 99.2 8E-10 1.7E-14 104.8 15.8 145 126-289 69-241 (285)
32 PF01343 Peptidase_S49: Peptid 98.8 1.6E-08 3.4E-13 87.7 9.5 112 183-297 2-141 (154)
33 TIGR00705 SppA_67K signal pept 98.6 4.4E-07 9.6E-12 94.3 13.8 156 131-298 75-271 (584)
34 cd06558 crotonase-like Crotona 98.5 1.3E-06 2.8E-11 76.6 11.9 144 129-296 23-181 (195)
35 PRK10949 protease 4; Provision 98.5 1.4E-06 3E-11 91.3 13.8 157 131-298 94-290 (618)
36 PF00378 ECH: Enoyl-CoA hydrat 98.3 6.7E-06 1.4E-10 75.5 10.8 147 129-298 22-180 (245)
37 PRK05869 enoyl-CoA hydratase; 98.2 4.7E-05 1E-09 69.8 14.6 151 123-297 21-188 (222)
38 PRK06495 enoyl-CoA hydratase; 98.2 4.3E-05 9.2E-10 71.2 14.2 150 122-297 16-183 (257)
39 PRK07511 enoyl-CoA hydratase; 98.2 5.5E-05 1.2E-09 70.4 14.9 151 122-297 15-187 (260)
40 PRK06213 enoyl-CoA hydratase; 98.2 5.1E-05 1.1E-09 69.5 13.7 144 129-297 26-181 (229)
41 PRK06143 enoyl-CoA hydratase; 98.1 5.1E-05 1.1E-09 70.8 13.7 152 122-297 19-188 (256)
42 PRK05995 enoyl-CoA hydratase; 98.1 8.1E-05 1.8E-09 69.4 14.1 144 129-297 28-187 (262)
43 PRK06688 enoyl-CoA hydratase; 98.1 5.5E-05 1.2E-09 70.2 12.8 151 123-297 18-185 (259)
44 TIGR03189 dienoyl_CoA_hyt cycl 98.1 7.2E-05 1.6E-09 69.7 13.6 151 122-296 13-176 (251)
45 PRK08258 enoyl-CoA hydratase; 98.1 0.0001 2.2E-09 69.5 14.6 145 129-297 41-203 (277)
46 PRK06210 enoyl-CoA hydratase; 98.1 7E-05 1.5E-09 70.2 13.3 150 123-297 19-197 (272)
47 COG3904 Predicted periplasmic 98.1 0.0002 4.3E-09 66.3 15.4 158 117-292 71-236 (245)
48 PRK09674 enoyl-CoA hydratase-i 98.1 0.00011 2.5E-09 68.3 14.2 145 129-297 26-181 (255)
49 PRK08139 enoyl-CoA hydratase; 98.0 0.00012 2.6E-09 68.7 13.6 144 129-297 35-192 (266)
50 PRK07509 enoyl-CoA hydratase; 98.0 0.00012 2.6E-09 68.1 13.5 151 122-296 15-190 (262)
51 PRK06190 enoyl-CoA hydratase; 98.0 0.00025 5.4E-09 66.5 15.5 145 129-297 28-183 (258)
52 PRK06023 enoyl-CoA hydratase; 98.0 0.00018 4E-09 66.7 14.4 144 129-297 30-186 (251)
53 PRK07110 polyketide biosynthes 98.0 0.00016 3.4E-09 67.2 13.9 145 129-297 29-183 (249)
54 PLN02921 naphthoate synthase 98.0 0.00026 5.6E-09 68.9 15.8 152 122-297 79-250 (327)
55 PLN02888 enoyl-CoA hydratase 98.0 0.00023 5E-09 66.8 15.0 145 129-297 34-188 (265)
56 PRK07657 enoyl-CoA hydratase; 98.0 0.00022 4.8E-09 66.5 14.5 144 129-297 28-186 (260)
57 PRK07468 enoyl-CoA hydratase; 98.0 0.00012 2.6E-09 68.4 12.7 144 129-297 29-188 (262)
58 PRK07938 enoyl-CoA hydratase; 98.0 9.9E-05 2.1E-09 68.6 12.1 150 122-297 14-180 (249)
59 PLN02664 enoyl-CoA hydratase/d 98.0 0.00013 2.9E-09 68.7 13.0 151 123-296 21-199 (275)
60 PRK05981 enoyl-CoA hydratase; 98.0 0.00028 6.1E-09 65.9 15.1 146 129-297 28-192 (266)
61 PRK07260 enoyl-CoA hydratase; 98.0 0.00016 3.4E-09 67.3 13.3 145 129-297 26-187 (255)
62 PRK05809 3-hydroxybutyryl-CoA 98.0 0.0002 4.3E-09 66.7 13.9 145 129-297 28-186 (260)
63 PRK03580 carnitinyl-CoA dehydr 98.0 0.00018 4E-09 67.1 13.7 151 122-297 15-183 (261)
64 PRK08150 enoyl-CoA hydratase; 98.0 0.00042 9.2E-09 64.6 15.9 143 129-297 26-181 (255)
65 PRK05862 enoyl-CoA hydratase; 97.9 0.00031 6.8E-09 65.3 15.0 144 129-297 28-183 (257)
66 PRK12319 acetyl-CoA carboxylas 97.9 6.2E-05 1.3E-09 71.2 10.4 140 119-297 69-215 (256)
67 PRK08138 enoyl-CoA hydratase; 97.9 0.00027 5.8E-09 66.0 14.5 144 129-297 32-187 (261)
68 PRK09120 p-hydroxycinnamoyl Co 97.9 0.00026 5.6E-09 66.9 14.3 144 129-297 32-193 (275)
69 PRK06127 enoyl-CoA hydratase; 97.9 0.00028 6E-09 66.3 14.3 151 123-297 24-195 (269)
70 PRK07658 enoyl-CoA hydratase; 97.9 0.0003 6.4E-09 65.3 14.3 145 129-297 25-183 (257)
71 TIGR00513 accA acetyl-CoA carb 97.9 0.00012 2.5E-09 71.4 11.8 140 119-297 122-268 (316)
72 PLN03230 acetyl-coenzyme A car 97.9 0.00014 3.1E-09 73.1 12.6 134 127-297 200-338 (431)
73 PRK07112 polyketide biosynthes 97.9 0.00029 6.3E-09 65.7 14.0 150 123-298 17-185 (255)
74 PRK09076 enoyl-CoA hydratase; 97.9 0.00053 1.1E-08 64.0 15.7 145 129-297 26-184 (258)
75 TIGR03210 badI 2-ketocyclohexa 97.9 0.00026 5.5E-09 66.1 13.6 144 129-297 26-183 (256)
76 PRK05724 acetyl-CoA carboxylas 97.9 0.00022 4.8E-09 69.5 13.4 141 118-297 121-268 (319)
77 PRK07854 enoyl-CoA hydratase; 97.9 0.00065 1.4E-08 63.0 15.9 143 129-295 24-173 (243)
78 PRK05980 enoyl-CoA hydratase; 97.9 0.00032 7E-09 65.3 13.8 145 129-297 27-189 (260)
79 TIGR02280 PaaB1 phenylacetate 97.9 0.00048 1E-08 64.1 14.9 144 129-297 23-182 (256)
80 PRK06563 enoyl-CoA hydratase; 97.9 0.00047 1E-08 64.1 14.8 150 123-297 12-181 (255)
81 PRK11423 methylmalonyl-CoA dec 97.9 0.00025 5.4E-09 66.4 13.0 150 123-297 17-185 (261)
82 PRK07396 dihydroxynaphthoic ac 97.9 0.00046 9.9E-09 65.0 14.8 145 129-297 37-196 (273)
83 PRK05864 enoyl-CoA hydratase; 97.9 0.00027 5.8E-09 66.6 13.2 150 123-297 23-199 (276)
84 PLN03214 probable enoyl-CoA hy 97.9 0.00028 6.1E-09 66.8 13.4 147 129-297 35-197 (278)
85 TIGR01929 menB naphthoate synt 97.9 0.00033 7.1E-09 65.5 13.6 144 129-297 27-186 (259)
86 PRK07327 enoyl-CoA hydratase; 97.9 0.00035 7.6E-09 65.6 13.8 144 129-297 36-195 (268)
87 PRK09245 enoyl-CoA hydratase; 97.9 0.00035 7.7E-09 65.2 13.7 97 179-297 95-192 (266)
88 PRK06142 enoyl-CoA hydratase; 97.9 0.00049 1.1E-08 64.5 14.7 149 123-296 19-197 (272)
89 PRK08260 enoyl-CoA hydratase; 97.8 0.00055 1.2E-08 65.2 14.9 97 179-297 105-202 (296)
90 PRK06494 enoyl-CoA hydratase; 97.8 0.00059 1.3E-08 63.6 14.7 145 129-297 28-183 (259)
91 PRK05674 gamma-carboxygeranoyl 97.8 0.00029 6.2E-09 66.1 12.5 144 129-297 30-189 (265)
92 PLN02600 enoyl-CoA hydratase 97.8 0.00061 1.3E-08 63.3 14.6 144 129-297 19-177 (251)
93 PRK06072 enoyl-CoA hydratase; 97.8 0.00056 1.2E-08 63.5 14.3 147 122-293 12-173 (248)
94 PRK08290 enoyl-CoA hydratase; 97.8 0.00043 9.3E-09 65.9 13.7 96 179-297 110-205 (288)
95 PRK06144 enoyl-CoA hydratase; 97.8 0.00068 1.5E-08 63.4 14.6 144 129-297 32-192 (262)
96 PRK08321 naphthoate synthase; 97.8 0.00079 1.7E-08 64.5 14.9 154 122-297 37-225 (302)
97 PLN02267 enoyl-CoA hydratase/i 97.8 0.0012 2.6E-08 61.2 15.4 146 129-296 23-184 (239)
98 PRK08140 enoyl-CoA hydratase; 97.7 0.0012 2.5E-08 61.6 15.2 144 129-297 28-188 (262)
99 PRK07799 enoyl-CoA hydratase; 97.7 0.0011 2.4E-08 61.9 14.4 153 122-298 17-190 (263)
100 KOG1680 Enoyl-CoA hydratase [L 97.7 0.00026 5.7E-09 67.7 10.3 144 129-298 61-217 (290)
101 PRK07827 enoyl-CoA hydratase; 97.7 0.00046 9.9E-09 64.4 11.7 141 129-295 30-187 (260)
102 PRK05870 enoyl-CoA hydratase; 97.7 0.00041 8.8E-09 64.4 11.2 141 129-294 27-181 (249)
103 PRK07659 enoyl-CoA hydratase; 97.7 0.00067 1.5E-08 63.3 12.6 140 129-294 30-184 (260)
104 CHL00198 accA acetyl-CoA carbo 97.7 0.00061 1.3E-08 66.6 12.6 139 120-297 126-271 (322)
105 PRK08272 enoyl-CoA hydratase; 97.7 0.00088 1.9E-08 64.0 13.2 95 179-297 119-213 (302)
106 PRK08259 enoyl-CoA hydratase; 97.6 0.0016 3.5E-08 60.7 14.5 145 129-297 27-182 (254)
107 TIGR03200 dearomat_oah 6-oxocy 97.6 0.00078 1.7E-08 66.7 12.4 146 129-298 52-214 (360)
108 PRK12478 enoyl-CoA hydratase; 97.6 0.0015 3.4E-08 62.5 14.0 94 179-297 104-198 (298)
109 PLN03229 acetyl-coenzyme A car 97.6 0.00045 9.9E-09 73.4 11.0 136 126-297 220-359 (762)
110 PRK08252 enoyl-CoA hydratase; 97.6 0.002 4.3E-08 60.0 14.2 145 129-297 27-180 (254)
111 PRK08788 enoyl-CoA hydratase; 97.6 0.0014 3.1E-08 62.7 13.3 148 129-297 40-210 (287)
112 PLN02874 3-hydroxyisobutyryl-C 97.4 0.0024 5.2E-08 63.3 13.5 150 122-297 23-193 (379)
113 COG1024 CaiD Enoyl-CoA hydrata 97.4 0.0033 7.1E-08 58.4 13.2 144 128-296 28-186 (257)
114 TIGR03134 malonate_gamma malon 97.4 0.0034 7.3E-08 59.0 13.0 141 129-298 45-191 (238)
115 TIGR02440 FadJ fatty oxidation 97.3 0.0046 9.9E-08 65.9 14.2 144 129-297 26-187 (699)
116 PRK05617 3-hydroxyisobutyryl-C 97.2 0.0029 6.3E-08 61.9 11.3 149 123-297 16-188 (342)
117 PRK11730 fadB multifunctional 97.2 0.008 1.7E-07 64.2 15.5 144 129-297 31-191 (715)
118 PLN02157 3-hydroxyisobutyryl-C 97.2 0.007 1.5E-07 60.8 14.1 149 122-297 49-221 (401)
119 TIGR02437 FadB fatty oxidation 97.2 0.0086 1.9E-07 64.1 15.5 151 123-297 20-191 (714)
120 PLN02851 3-hydroxyisobutyryl-C 97.2 0.0097 2.1E-07 59.9 14.8 154 120-298 52-227 (407)
121 PRK11154 fadJ multifunctional 97.1 0.015 3.2E-07 62.2 15.8 144 129-297 31-192 (708)
122 TIGR03222 benzo_boxC benzoyl-C 97.1 0.01 2.2E-07 61.9 14.0 147 129-297 295-466 (546)
123 TIGR03222 benzo_boxC benzoyl-C 97.1 0.0063 1.4E-07 63.3 12.2 151 129-297 45-213 (546)
124 PRK08184 benzoyl-CoA-dihydrodi 97.0 0.0058 1.3E-07 63.7 11.8 99 179-297 115-217 (550)
125 PLN02988 3-hydroxyisobutyryl-C 97.0 0.011 2.5E-07 58.8 13.2 150 122-297 21-193 (381)
126 TIGR02441 fa_ox_alpha_mit fatt 96.8 0.016 3.4E-07 62.3 13.2 143 129-296 38-198 (737)
127 TIGR01117 mmdA methylmalonyl-C 96.7 0.0077 1.7E-07 62.2 8.9 154 125-298 327-483 (512)
128 PLN02820 3-methylcrotonyl-CoA 96.1 0.031 6.7E-07 58.6 9.5 160 127-298 380-542 (569)
129 COG0825 AccA Acetyl-CoA carbox 95.9 0.017 3.7E-07 56.0 6.4 113 150-297 150-267 (317)
130 TIGR00515 accD acetyl-CoA carb 95.9 0.098 2.1E-06 50.5 11.4 133 124-298 131-267 (285)
131 PRK05654 acetyl-CoA carboxylas 95.8 0.13 2.9E-06 49.7 12.0 133 124-298 132-268 (292)
132 PRK08184 benzoyl-CoA-dihydrodi 95.7 0.037 8E-07 57.8 8.2 147 129-297 299-470 (550)
133 PF01039 Carboxyl_trans: Carbo 94.1 0.038 8.2E-07 56.7 3.1 156 127-298 308-466 (493)
134 KOG1681 Enoyl-CoA isomerase [L 91.1 0.072 1.6E-06 50.5 0.4 100 180-299 119-218 (292)
135 PRK07189 malonate decarboxylas 90.9 1.3 2.8E-05 43.2 8.8 100 124-228 79-186 (301)
136 CHL00174 accD acetyl-CoA carbo 89.7 5.9 0.00013 38.7 12.1 134 124-298 144-281 (296)
137 PF06833 MdcE: Malonate decarb 88.9 4.1 8.9E-05 38.5 10.1 115 146-295 60-186 (234)
138 TIGR03133 malonate_beta malona 88.1 4.2 9.1E-05 39.2 9.8 100 124-228 70-177 (274)
139 COG0447 MenB Dihydroxynaphthoi 85.6 0.82 1.8E-05 43.2 3.4 97 177-297 106-205 (282)
140 COG4799 Acetyl-CoA carboxylase 78.9 7.1 0.00015 41.0 7.6 157 125-297 336-495 (526)
141 KOG1682 Enoyl-CoA isomerase [L 78.0 9.8 0.00021 35.9 7.5 98 179-298 117-214 (287)
142 PLN02820 3-methylcrotonyl-CoA 73.2 27 0.00059 37.0 10.2 99 124-227 140-244 (569)
143 KOG1679 Enoyl-CoA hydratase [L 72.9 3.6 7.8E-05 39.0 3.3 100 175-299 112-215 (291)
144 KOG0016 Enoyl-CoA hydratase/is 72.3 3.9 8.4E-05 39.3 3.4 98 179-297 99-196 (266)
145 TIGR01117 mmdA methylmalonyl-C 67.3 47 0.001 34.7 10.3 98 124-228 93-194 (512)
146 TIGR02886 spore_II_AA anti-sig 60.3 49 0.0011 25.9 7.2 76 122-210 11-92 (106)
147 cd07041 STAS_RsbR_RsbS_like Su 59.2 24 0.00053 27.8 5.2 81 122-210 13-94 (109)
148 PRK09726 antitoxin HipB; Provi 54.2 52 0.0011 25.7 6.3 76 236-311 9-88 (88)
149 PF01039 Carboxyl_trans: Carbo 51.1 32 0.00069 35.5 5.8 98 124-228 68-171 (493)
150 cd06844 STAS Sulphate Transpor 44.5 78 0.0017 24.7 5.9 38 122-161 11-48 (100)
151 PF08496 Peptidase_S49_N: Pept 39.9 56 0.0012 29.0 4.8 43 122-164 102-145 (155)
152 PRK13130 H/ACA RNA-protein com 39.7 21 0.00045 26.7 1.8 22 33-54 22-43 (56)
153 PF04110 APG12: Ubiquitin-like 38.2 1.5E+02 0.0033 23.9 6.7 70 118-200 15-87 (87)
154 PF14566 PTPlike_phytase: Inos 37.4 60 0.0013 28.0 4.6 58 119-184 90-149 (149)
155 COG1366 SpoIIAA Anti-anti-sigm 33.2 1.6E+02 0.0035 23.8 6.3 78 122-210 16-97 (117)
156 TIGR00377 ant_ant_sig anti-ant 32.3 2.3E+02 0.005 21.9 6.9 78 122-210 15-96 (108)
157 PF01381 HTH_3: Helix-turn-hel 31.7 92 0.002 21.4 4.0 33 255-287 12-44 (55)
158 COG2260 Predicted Zn-ribbon RN 31.2 35 0.00075 25.8 1.8 27 28-54 14-43 (59)
159 COG1938 Archaeal enzymes of AT 28.3 3.3E+02 0.0071 26.1 8.2 143 109-258 67-227 (244)
160 PF06972 DUF1296: Protein of u 27.7 77 0.0017 24.1 3.1 35 252-287 6-41 (60)
161 TIGR03070 couple_hipB transcri 26.6 1.6E+02 0.0035 19.9 4.5 32 255-286 18-49 (58)
162 COG4799 Acetyl-CoA carboxylase 26.1 1.9E+02 0.0041 30.7 6.7 96 126-227 104-202 (526)
163 TIGR02675 tape_meas_nterm tape 25.7 1.7E+02 0.0038 22.4 4.9 28 253-281 45-72 (75)
164 PF00681 Plectin: Plectin repe 25.3 41 0.00088 23.3 1.2 19 274-292 17-35 (45)
165 PF07027 DUF1318: Protein of u 24.8 2.2E+02 0.0047 23.3 5.6 48 218-273 24-71 (95)
166 KOG3439 Protein conjugation fa 24.6 3.4E+02 0.0073 23.2 6.7 73 117-199 43-115 (116)
167 COG1512 Beta-propeller domains 23.7 1.8E+02 0.004 28.1 5.7 59 117-182 31-89 (271)
168 PF03808 Glyco_tran_WecB: Glyc 23.7 4.7E+02 0.01 22.8 7.9 75 111-201 34-115 (172)
169 PF08105 Antimicrobial10: Metc 23.1 42 0.00091 24.6 0.9 10 42-51 37-46 (52)
170 TIGR01729 taurine_ABC_bnd taur 23.0 3.3E+02 0.0072 25.2 7.3 31 254-284 226-256 (300)
171 PF13443 HTH_26: Cro/C1-type H 21.6 2E+02 0.0043 20.3 4.4 40 245-284 3-43 (63)
172 cd06533 Glyco_transf_WecG_TagA 21.5 5.5E+02 0.012 22.4 8.1 77 110-201 31-113 (171)
173 smart00250 PLEC Plectin repeat 21.1 58 0.0013 21.7 1.3 19 275-293 18-36 (38)
174 TIGR03427 ABC_peri_uca ABC tra 21.0 1.6E+02 0.0035 28.7 4.8 42 252-293 226-268 (328)
175 cd07560 Peptidase_S41_CPP C-te 21.0 5.5E+02 0.012 23.3 8.0 86 112-208 41-152 (211)
176 PF01740 STAS: STAS domain; I 20.5 2.2E+02 0.0048 22.4 4.8 84 121-210 11-101 (117)
177 KOG3281 Mitochondrial F1-ATPas 20.4 1.1E+02 0.0023 29.7 3.3 90 54-145 143-233 (273)
178 cd06567 Peptidase_S41 C-termin 20.3 5.6E+02 0.012 22.7 7.9 68 131-209 72-166 (224)
179 PHA00099 minor capsid protein 20.0 3.5E+02 0.0077 23.7 6.1 36 253-290 79-114 (147)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-66 Score=475.24 Aligned_cols=204 Identities=44% Similarity=0.683 Sum_probs=188.1
Q ss_pred CCC-chhccccCCCCCCCCCCCCChhhhccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCC
Q 035798 90 ASP-AQVERSASYNEHRPDTPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGE 168 (313)
Q Consensus 90 ~~p-~~~e~~~~~~~~~~~~~~~di~s~Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e 168 (313)
.+| .++++. .+|+ ++|+||||+||++|||||+++||+.++++|++|||||+++|++|+|+||||||||+
T Consensus 66 ~~p~~~~~~~-~rG~----~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~----- 135 (275)
T KOG0840|consen 66 LVPRFPIESP-GRGR----ERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGS----- 135 (275)
T ss_pred cCCcceeecc-ccCC----CCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCc-----
Confidence 356 445555 3562 46899999999999999999999999999999999999999999999999999999
Q ss_pred CccccchHHHHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHH
Q 035798 169 SVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAM 248 (313)
Q Consensus 169 ~vg~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~ 248 (313)
+++|+||||+|++++.||.|+|+|+|+|||+|||++|+||+|+++|||++|||||.++..| ++.|+.++++|++
T Consensus 136 ----vtaglAIYDtMq~ik~~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~G--qa~Di~i~akE~~ 209 (275)
T KOG0840|consen 136 ----VTAGLAIYDTMQYIKPDVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGG--QATDIVIQAKELM 209 (275)
T ss_pred ----cchhhhHHHHHHhhCCCceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCc--cchHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999998766 8999999999999
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCCccchhccCCCCC
Q 035798 249 VNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRGQETIMAEVAPPE 309 (313)
Q Consensus 249 ~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~~~~~~~d~~~~~ 309 (313)
++++.+.++||+|||++.|+|.++|+||+||+|+||+||||||+|++...++..-|-+..|
T Consensus 210 ~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~p~~~~~~~~~~~e 270 (275)
T KOG0840|consen 210 RIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDHPPETRVDDGTLVE 270 (275)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhcCCcccccccchhhh
Confidence 9999999999999999999999999999999999999999999999977665555554433
No 2
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=5.8e-64 Score=459.46 Aligned_cols=195 Identities=48% Similarity=0.855 Sum_probs=188.3
Q ss_pred CCCCCCCCCCCChhhhccCCcEEEEcCccCHH----------HHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCc
Q 035798 101 YNEHRPDTPPPDLPSLLLHGRIVYIGMPLVPA----------VTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESV 170 (313)
Q Consensus 101 ~~~~~~~~~~~di~s~Ll~~RIIfL~g~Id~~----------~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~v 170 (313)
+++++++.+|.|+|++||++|||||+++|+++ ++++|++||+||+.+++.++|+||||||||++++|++|
T Consensus 11 ~~~~~~~~~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~i 90 (222)
T PRK12552 11 YGDAVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAI 90 (222)
T ss_pred cCCCCCCCCCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccc
Confidence 55566677899999999999999999999999 99999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHH
Q 035798 171 GMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVN 250 (313)
Q Consensus 171 g~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~ 250 (313)
|.|++|++|||+|++++++|+|+|+|+|||||++||++|+||+|+++|||++|||||+++..| +++|++++++|++++
T Consensus 91 G~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G--~A~di~~~a~el~~~ 168 (222)
T PRK12552 91 GFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARG--QATDIQIRAKEVLHN 168 (222)
T ss_pred cccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccccc--CHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987766 999999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 251 RDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 251 r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
++.+.++|+++||++.|+|.++|+||+||||+||+||||||+|+++.
T Consensus 169 r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 169 KRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 99999999999999999999999999999999999999999999865
No 3
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=3.6e-64 Score=453.48 Aligned_cols=193 Identities=40% Similarity=0.638 Sum_probs=185.2
Q ss_pred CCCchhccccCCCCCCCCCCCCChhhhccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCC
Q 035798 90 ASPAQVERSASYNEHRPDTPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGES 169 (313)
Q Consensus 90 ~~p~~~e~~~~~~~~~~~~~~~di~s~Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~ 169 (313)
.+|+++|+++ +++ +.+|||++|+++|||||+|+|++.+++.+++||++|+++++.++|+||||||||+
T Consensus 3 ~~~~~~e~~~-~~~-----~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~------ 70 (200)
T COG0740 3 LVPMVIEQTS-RGE-----RSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGS------ 70 (200)
T ss_pred CCccccCccc-CCC-----ChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcc------
Confidence 5799999984 666 4699999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Q 035798 170 VGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMV 249 (313)
Q Consensus 170 vg~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~ 249 (313)
|++|+||||+|++++++|+|+|+|+|||||++|++||++|||+++|||++|||||+++..| +++|++++|+|+++
T Consensus 71 ---V~aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G--~a~Di~i~A~ei~~ 145 (200)
T COG0740 71 ---VTAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQG--QASDIEIHAREILK 145 (200)
T ss_pred ---cchhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCcc--CHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999988777 89999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCCcc
Q 035798 250 NRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRGQE 299 (313)
Q Consensus 250 ~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~~~ 299 (313)
.+..+.++|+++||++.|+|+++++||+||+|+||++|||||+|++..+.
T Consensus 146 ~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~ 195 (200)
T COG0740 146 IKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA 195 (200)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence 99999999999999999999999999999999999999999999997754
No 4
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=9e-60 Score=431.83 Aligned_cols=191 Identities=37% Similarity=0.575 Sum_probs=181.9
Q ss_pred CCCchhccccCCCCCCCCCCCCChhhhccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCC
Q 035798 90 ASPAQVERSASYNEHRPDTPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGES 169 (313)
Q Consensus 90 ~~p~~~e~~~~~~~~~~~~~~~di~s~Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~ 169 (313)
.+|.+++++. .++ +++|+|++||++|||||+++||+.+++.+++||+||+.++++++|+||||||||+
T Consensus 30 ~~p~~~~~~~-~~~-----~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGs------ 97 (221)
T PRK14514 30 LNPYILEERQ-LNV-----TQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGS------ 97 (221)
T ss_pred ccceeeeeCC-CCC-----cccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcc------
Confidence 5788888873 454 5799999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Q 035798 170 VGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMV 249 (313)
Q Consensus 170 vg~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~ 249 (313)
|++|++|||+|++++++|+|+|+|+|||||++||++|++|||+++|||++|||||+++..| +++|++++++|+++
T Consensus 98 ---v~aGlaIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G--~a~di~i~a~el~~ 172 (221)
T PRK14514 98 ---VYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQG--QASDIEITAREIQK 172 (221)
T ss_pred ---hhhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCC--CcchHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999987665 89999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 250 NRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 250 ~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+++.+.++|+++||++.++|.++++||+||||+||+||||||+|+++.
T Consensus 173 ~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 173 LKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence 999999999999999999999999999999999999999999999864
No 5
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=1.6e-59 Score=424.81 Aligned_cols=193 Identities=36% Similarity=0.587 Sum_probs=181.8
Q ss_pred CCchhccccCCCCCCCCCCCCChhhhccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCc
Q 035798 91 SPAQVERSASYNEHRPDTPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESV 170 (313)
Q Consensus 91 ~p~~~e~~~~~~~~~~~~~~~di~s~Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~v 170 (313)
+|.+++++. +++ +|.|+|++||++|||||+++|++++++.|++||+||+.+++.++|+||||||||+
T Consensus 4 ~p~~~~~~~-~~~-----~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~------- 70 (201)
T PRK14513 4 IPYVIEQTG-RGE-----RMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGE------- 70 (201)
T ss_pred CCcccccCC-CCc-----cccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCc-------
Confidence 566676663 443 4799999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHH
Q 035798 171 GMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVN 250 (313)
Q Consensus 171 g~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~ 250 (313)
|++|++|||+|++++++|+|+|+|+|||||++||+||++|||+++|||++|||||+++..| ++.|++++++|+++.
T Consensus 71 --v~~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G--~a~di~~~a~el~~~ 146 (201)
T PRK14513 71 --VYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRG--NTPDLEVQAKEVLFL 146 (201)
T ss_pred --hhhHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCC--CHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999987766 899999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCCccc
Q 035798 251 RDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRGQET 300 (313)
Q Consensus 251 r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~~~~ 300 (313)
++.+.++|+++||++.++|.++|+||+||||+||+||||||+|+++.+.|
T Consensus 147 ~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~~~~ 196 (201)
T PRK14513 147 RDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPTRVK 196 (201)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccCCCC
Confidence 99999999999999999999999999999999999999999999976544
No 6
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=5.4e-58 Score=414.44 Aligned_cols=181 Identities=32% Similarity=0.558 Sum_probs=174.2
Q ss_pred CCCCChhhhccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcC
Q 035798 108 TPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMK 187 (313)
Q Consensus 108 ~~~~di~s~Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~ 187 (313)
.+|.|+|++||++|||||+++||+++++.+++||+||+++++.++|+||||||||+ |++|++|||+|++++
T Consensus 18 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~---------v~~g~aIyd~m~~~~ 88 (200)
T CHL00028 18 ATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGS---------VISGLAIYDTMQFVK 88 (200)
T ss_pred cccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcc---------hhhHHHHHHHHHhcC
Confidence 36899999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred CeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 035798 188 CEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLP-SSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSE 266 (313)
Q Consensus 188 ~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g-~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~ 266 (313)
++|+|+|+|+|+|||++||++|++|+|+++|||++|||||+++ ..| +++|+++++++++++++.+.++|+++||++.
T Consensus 89 ~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G--~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~ 166 (200)
T CHL00028 89 PDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEG--QASEFVLEAEELLKLRETITRVYAQRTGKPL 166 (200)
T ss_pred CCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 9999999999999999999999999999999999999999976 555 9999999999999999999999999999999
Q ss_pred HHHHHhhcCCccccHHHHHHcCCceEEecCCcc
Q 035798 267 EFVTKTIRRPYHMDSRRAKEFGVIDKVLWRGQE 299 (313)
Q Consensus 267 e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~~~ 299 (313)
++|.++++||+||||+||++|||||+|+++..+
T Consensus 167 e~i~~~~~r~~~lta~EA~eyGliD~I~~~~~~ 199 (200)
T CHL00028 167 WVISEDMERDVFMSATEAKAYGIVDLVAVNNEE 199 (200)
T ss_pred HHHHHHhhcCccCCHHHHHHcCCCcEEeecCcC
Confidence 999999999999999999999999999986543
No 7
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=9.8e-58 Score=411.70 Aligned_cols=178 Identities=39% Similarity=0.625 Sum_probs=172.9
Q ss_pred CCCChhhhccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCC
Q 035798 109 PPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKC 188 (313)
Q Consensus 109 ~~~di~s~Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~ 188 (313)
++.|+|++||++|||||+++||+++++.+++||+||+++++.++|+||||||||+ |++|++|||+|+++++
T Consensus 14 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~---------v~~g~aIyd~m~~~~~ 84 (196)
T PRK12551 14 RAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGS---------VYDGLGIFDTMQHVKP 84 (196)
T ss_pred cccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcc---------hhhHHHHHHHHHhcCC
Confidence 4699999999999999999999999999999999999999999999999999999 6999999999999999
Q ss_pred eEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 035798 189 EVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEF 268 (313)
Q Consensus 189 ~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~ 268 (313)
+|+|+|+|+|+|||++||++|++|+|+++|||++|||||+++..| +++|++++++++++.++.+.++|+++||++.++
T Consensus 85 ~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G--~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~ 162 (196)
T PRK12551 85 DVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARG--QASDIRIQADEILFLKERLNTELSERTGQPLER 162 (196)
T ss_pred CEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCC--CcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 999999999999999999999999999999999999999977666 899999999999999999999999999999999
Q ss_pred HHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 269 VTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 269 I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
|.++++||+||||+||++|||||+|++..
T Consensus 163 i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 163 IQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 99999999999999999999999999875
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=6.5e-53 Score=378.17 Aligned_cols=189 Identities=41% Similarity=0.659 Sum_probs=176.9
Q ss_pred CCchhccccCCCCCCCCCCCCChhhhccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCc
Q 035798 91 SPAQVERSASYNEHRPDTPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESV 170 (313)
Q Consensus 91 ~p~~~e~~~~~~~~~~~~~~~di~s~Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~v 170 (313)
+|.+++++. .+ .+++|++++|+++|||||+|+|++.+++.+++||++|+.+++.++|+||||||||+
T Consensus 3 ~p~~~~~~~-~~-----~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~------- 69 (191)
T TIGR00493 3 IPMVIEQTG-RG-----ERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGS------- 69 (191)
T ss_pred CCcccccCC-CC-----cccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCC-------
Confidence 455555542 33 25799999999999999999999999999999999999999899999999999999
Q ss_pred cccchHHHHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHH
Q 035798 171 GMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVN 250 (313)
Q Consensus 171 g~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~ 250 (313)
|++|++|||+|++++++|+|+|.|+|+|||++|+++|++|+|+++|||++|||||+++..| ++.|++++++++.++
T Consensus 70 --v~~g~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G--~a~d~~~~a~~l~~~ 145 (191)
T TIGR00493 70 --ITAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQG--QASDIEIQANEILRL 145 (191)
T ss_pred --HHHHHHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccC--CcchhHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999976665 899999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecC
Q 035798 251 RDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWR 296 (313)
Q Consensus 251 r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~ 296 (313)
++.+.++|+++||++.+++++++++|+||||+||++|||||+|+++
T Consensus 146 ~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~~ 191 (191)
T TIGR00493 146 KGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLTR 191 (191)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEecC
Confidence 9999999999999999999999999999999999999999999874
No 9
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=3.1e-51 Score=369.36 Aligned_cols=183 Identities=30% Similarity=0.450 Sum_probs=174.3
Q ss_pred CCCCCCChhhhccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHh
Q 035798 106 PDTPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQ 185 (313)
Q Consensus 106 ~~~~~~di~s~Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~ 185 (313)
++..+.+++++||++|+|||+|+|++.+++.|+++|++|+.+++.++|+||||||||+ |++|++|||+|++
T Consensus 9 ~~~~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~---------v~ag~aI~d~i~~ 79 (197)
T PRK14512 9 KQTGIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGD---------IDAGFAIFNMIRF 79 (197)
T ss_pred ccCCcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCC---------HHHHHHHHHHHHh
Confidence 3446789999999999999999999999999999999999888889999999999999 6999999999999
Q ss_pred cCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 035798 186 MKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNS 265 (313)
Q Consensus 186 i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s 265 (313)
++.+|+|+|.|+|+|||++|+++|++|+|+++|||++|||||+++..| ++.|++++++++++.++.+.++|+++||++
T Consensus 80 ~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G--~a~di~~~a~~l~~~~~~i~~~~a~~tg~~ 157 (197)
T PRK14512 80 VKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKG--VATDIEIYANELNKVKSELNDIIAKETGQE 157 (197)
T ss_pred CCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCcccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999999999977666 899999999999999999999999999999
Q ss_pred HHHHHHhhcCCccccHHHHHHcCCceEEecCCcc
Q 035798 266 EEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRGQE 299 (313)
Q Consensus 266 ~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~~~ 299 (313)
.++|.++++||+||||+||++|||||+|+++..+
T Consensus 158 ~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~ 191 (197)
T PRK14512 158 LDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLE 191 (197)
T ss_pred HHHHHHhhhcCcccCHHHHHHcCCccEeecCcHH
Confidence 9999999999999999999999999999987543
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.6e-50 Score=364.92 Aligned_cols=180 Identities=42% Similarity=0.667 Sum_probs=173.9
Q ss_pred CCCChhhhccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCC
Q 035798 109 PPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKC 188 (313)
Q Consensus 109 ~~~di~s~Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~ 188 (313)
.|+|++++|+++|||||+|+|++.+++.++++|++|+.+++.++|+||||||||+ |++|++|||+|+++++
T Consensus 20 ~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~---------v~~g~~I~d~i~~~~~ 90 (200)
T PRK00277 20 RSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGS---------VTAGLAIYDTMQFIKP 90 (200)
T ss_pred ccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCc---------HHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999999999999999998899999999999999 6999999999999999
Q ss_pred eEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 035798 189 EVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEF 268 (313)
Q Consensus 189 ~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~ 268 (313)
+|+|+|.|.|+|+|++|+++|++|+|+++|||++|||||+++..| ++.|++++++++.++++.+.++|+++||++.++
T Consensus 91 ~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G--~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~ 168 (200)
T PRK00277 91 DVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQG--QATDIEIHAREILKLKKRLNEILAEHTGQPLEK 168 (200)
T ss_pred CEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 999999999999999999999999999999999999999977666 899999999999999999999999999999999
Q ss_pred HHHhhcCCccccHHHHHHcCCceEEecCCcc
Q 035798 269 VTKTIRRPYHMDSRRAKEFGVIDKVLWRGQE 299 (313)
Q Consensus 269 I~~~~~rd~~lsA~EAleyGLID~Ii~~~~~ 299 (313)
++++++||+||||+||++|||||+|++..+|
T Consensus 169 i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~~ 199 (200)
T PRK00277 169 IEKDTDRDNFMSAEEAKEYGLIDEVLTKRKE 199 (200)
T ss_pred HHHHhhCCccccHHHHHHcCCccEEeecCCC
Confidence 9999999999999999999999999987654
No 11
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=9.6e-50 Score=351.10 Aligned_cols=178 Identities=34% Similarity=0.534 Sum_probs=168.3
Q ss_pred CCCChhhhccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCC
Q 035798 109 PPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKC 188 (313)
Q Consensus 109 ~~~di~s~Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~ 188 (313)
.|+|||++|+++|+|||+|+||+++++.++++|++|+.+++.++|+|+||||||+ |.+|++|||+|+.++.
T Consensus 5 ~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~---------v~~g~~i~~~i~~~~~ 75 (182)
T PF00574_consen 5 EWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGD---------VDAGLAIYDAIRSSKA 75 (182)
T ss_dssp EEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBC---------HHHHHHHHHHHHHSSS
T ss_pred EEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCc---------cHHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999999999999888899999999999999 6999999999999999
Q ss_pred eEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 035798 189 EVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEF 268 (313)
Q Consensus 189 ~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~ 268 (313)
+|+|+|.|.|+|+|++|+++|++++|++.|||+||+|||+.+..| ++.+++++++++.+.++.+.++|+++||++.++
T Consensus 76 ~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g--~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~ 153 (182)
T PF00574_consen 76 PVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGG--NASELREQAKELEKLNERIANIYAERTGLSKEE 153 (182)
T ss_dssp EEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEE--EHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHH
T ss_pred CeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeeccc--ccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 999999999999999999999999999999999999999987776 899999999999999999999999999999999
Q ss_pred HHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 269 VTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 269 I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
|.++++||+||+|+||++|||||+|++++
T Consensus 154 i~~~~~~~~~l~a~EA~~~GiiD~I~~~~ 182 (182)
T PF00574_consen 154 IEELMDRDTWLSAEEALEYGIIDEIIESR 182 (182)
T ss_dssp HHHHCSSTEEEEHHHHHHHTSSSEEESS-
T ss_pred HHHHHhCCccccHHHHHHcCCCCEeccCC
Confidence 99999999999999999999999999863
No 12
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=2.4e-48 Score=352.56 Aligned_cols=182 Identities=37% Similarity=0.568 Sum_probs=171.7
Q ss_pred CCCChhhhccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCC
Q 035798 109 PPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKC 188 (313)
Q Consensus 109 ~~~di~s~Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~ 188 (313)
.+.||+++|+++|+|||+|+|++.+++.++++|++++.+++.++|+||||||||+ +++|++|||+|++++.
T Consensus 24 ~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~---------v~~g~~I~d~i~~~~~ 94 (207)
T PRK12553 24 KESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGS---------VTAGDAIYDTIQFIRP 94 (207)
T ss_pred ccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCc---------HHHHHHHHHHHHhcCC
Confidence 4689999999999999999999999999999999999988889999999999999 6999999999999999
Q ss_pred eEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 035798 189 EVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEF 268 (313)
Q Consensus 189 ~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~ 268 (313)
+|+|+|.|.|+|+|++|+++|++|+|++.|||++|||||+.+....|++.|+++++++++++++.+.++|+++||++.++
T Consensus 95 ~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~ 174 (207)
T PRK12553 95 DVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEK 174 (207)
T ss_pred CcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999984221234999999999999999999999999999999999
Q ss_pred HHHhhcCCccccHHHHHHcCCceEEecCCcc
Q 035798 269 VTKTIRRPYHMDSRRAKEFGVIDKVLWRGQE 299 (313)
Q Consensus 269 I~~~~~rd~~lsA~EAleyGLID~Ii~~~~~ 299 (313)
+++++++++||||+||++|||||+|+++..+
T Consensus 175 i~~~~~~~~~lta~EA~e~GliD~I~~~~~d 205 (207)
T PRK12553 175 IRKDTDRDKWLTAEEAKDYGLVDQIITSYRD 205 (207)
T ss_pred HHHHHhcCccccHHHHHHcCCccEEcCchhh
Confidence 9999999999999999999999999987643
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=4.6e-47 Score=333.42 Aligned_cols=171 Identities=48% Similarity=0.753 Sum_probs=165.9
Q ss_pred ChhhhccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCCeEE
Q 035798 112 DLPSLLLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVH 191 (313)
Q Consensus 112 di~s~Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~~V~ 191 (313)
||+++|+++|+|||+|+|++.+++.++++|++++.+++.++|+||||||||+ +++|++|||.|++++.+|+
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~---------v~~~~~i~~~l~~~~~~v~ 71 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGS---------VTAGLAIYDTMQYIKPPVS 71 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCC---------HHHHHHHHHHHHhcCCCEE
Confidence 7899999999999999999999999999999999988889999999999999 5999999999999999999
Q ss_pred EEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 035798 192 TVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTK 271 (313)
Q Consensus 192 Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~ 271 (313)
|+|.|+|+|+|++|+++|++|+|++.|||++|+|+|+.+..| ++.|+.++++++.++++.+.++|+++||++.+++.+
T Consensus 72 t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~ 149 (171)
T cd07017 72 TICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGG--QASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEK 149 (171)
T ss_pred EEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999999987777 689999999999999999999999999999999999
Q ss_pred hhcCCccccHHHHHHcCCceEE
Q 035798 272 TIRRPYHMDSRRAKEFGVIDKV 293 (313)
Q Consensus 272 ~~~rd~~lsA~EAleyGLID~I 293 (313)
+|++++||+|+||++|||||+|
T Consensus 150 ~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 150 DTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HhhCCccccHHHHHHcCCCccC
Confidence 9999999999999999999987
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=2e-45 Score=321.31 Aligned_cols=162 Identities=35% Similarity=0.534 Sum_probs=157.3
Q ss_pred cEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCCeEEEEEcccchh
Q 035798 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIG 200 (313)
Q Consensus 121 RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS 200 (313)
|+|||+|+|++.+++.++++|++|+.+++.++|+||||||||+ +++|++|||+|+.++.+|+|+|.|+|+|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~---------v~~~~~i~~~i~~~~~~v~~~~~g~aaS 71 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGD---------VFAGMAIYDTIKFIKADVVTIIDGLAAS 71 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCc---------HHHHHHHHHHHHhcCCCceEEEEeehhh
Confidence 7999999999999999999999999988889999999999999 6999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCcccc
Q 035798 201 MACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMD 280 (313)
Q Consensus 201 ~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~ls 280 (313)
+|++|+++|++|+|+++||+++|||||+++..| ++.|++++++++++.++.+.++|+++||++.++|++++++++||+
T Consensus 72 ~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g--~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~s 149 (162)
T cd07013 72 MGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLG--DATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLS 149 (162)
T ss_pred HHHHHHHcCCCCcEEEecCEEEEEccCcccccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCcccc
Confidence 999999999999999999999999999977666 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceEE
Q 035798 281 SRRAKEFGVIDKV 293 (313)
Q Consensus 281 A~EAleyGLID~I 293 (313)
|+||++|||||+|
T Consensus 150 a~eA~~~GliD~i 162 (162)
T cd07013 150 AREAVEYGFADTI 162 (162)
T ss_pred HHHHHHcCCCCcC
Confidence 9999999999986
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=4.3e-33 Score=240.70 Aligned_cols=156 Identities=26% Similarity=0.293 Sum_probs=147.7
Q ss_pred EEEEcCccCH---HHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCCeEEEEEcccc
Q 035798 122 IVYIGMPLVP---AVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAA 198 (313)
Q Consensus 122 IIfL~g~Id~---~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~G~A 198 (313)
-|||+|+|+. .+++.+.++|.+++.. ++|.||||||||+ +.+|++||+.|+.++.||.|++.|.|
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~---------~~~~~~i~~~i~~~~~pvi~~v~g~a 69 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGD---------VFAGLAIYNALKRHKGKVTVKIDGLA 69 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCC---------HHHHHHHHHHHHhcCCCEEEEEcchH
Confidence 5899999999 7999999999988653 8999999999999 59999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCcc
Q 035798 199 IGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYH 278 (313)
Q Consensus 199 aS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~ 278 (313)
+|+|++|+++|++ |++.|+++||+|+|+++..| +..++++..++++++++.+.+.|++++|++.+++.+++.+++|
T Consensus 70 ~s~g~~ia~a~d~--~~~~~~a~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~ 145 (160)
T cd07016 70 ASAASVIAMAGDE--VEMPPNAMLMIHNPSTGAAG--NADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETW 145 (160)
T ss_pred HhHHHHHHhcCCe--EEECCCcEEEEECCccccCc--CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeE
Confidence 9999999999997 99999999999999977666 6789999999999999999999999999999999999999999
Q ss_pred ccHHHHHHcCCceEE
Q 035798 279 MDSRRAKEFGVIDKV 293 (313)
Q Consensus 279 lsA~EAleyGLID~I 293 (313)
|+++||+++||||+|
T Consensus 146 l~a~eA~~~GliD~v 160 (160)
T cd07016 146 LTAQEAVELGFADEI 160 (160)
T ss_pred CcHHHHHHcCCCCcC
Confidence 999999999999986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.97 E-value=6.4e-31 Score=233.17 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=142.0
Q ss_pred EEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCCeEEEEEc---ccc
Q 035798 122 IVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAV---GAA 198 (313)
Q Consensus 122 IIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~---G~A 198 (313)
+|-|.|.|++.....+...|-..+. ++.+.|.|+||||||+ +.++++|||+|++.+.||.|+|. |+|
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~~-~~~~~i~l~inSPGG~---------v~~~~~I~~~i~~~~~pvv~~v~p~g~~A 72 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGR---------ADAAGNIVQRIQQSKIPVIIYVYPPGASA 72 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHhc-CCCCeEEEEEECCCCC---------HHHHHHHHHHHHhcCcCEEEEEecCCCee
Confidence 5778999999988888887766554 5678999999999998 69999999999999999999999 999
Q ss_pred hhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcC
Q 035798 199 IGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGL---LPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRR 275 (313)
Q Consensus 199 aS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~---g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~r 275 (313)
+|+|++|+++|++ |+|.|+++++.|+|..+ .|+ ..+.|.+++.+++.++|+ +|+++|++.+.++++++|
T Consensus 73 aSag~~I~~a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~ 144 (172)
T cd07015 73 ASAGTYIALGSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITK 144 (172)
T ss_pred hhHHHHHHHhcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHh
Confidence 9999999999998 99999999999999753 231 115677888888877766 999999999999999999
Q ss_pred CccccHHHHHHcCCceEEecCCccc
Q 035798 276 PYHMDSRRAKEFGVIDKVLWRGQET 300 (313)
Q Consensus 276 d~~lsA~EAleyGLID~Ii~~~~~~ 300 (313)
++|||++||++||+||.|+++.++-
T Consensus 145 ~~~lta~EA~~~G~iD~ia~~~~~l 169 (172)
T cd07015 145 DLSLTPEEALKYGVIEVVARDINEL 169 (172)
T ss_pred hcCcCHHHHHHcCCceeeeCCHHHH
Confidence 9999999999999999999986653
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.97 E-value=1.3e-29 Score=217.94 Aligned_cols=161 Identities=17% Similarity=0.262 Sum_probs=150.8
Q ss_pred EEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCCeEEEEEcccchhH
Q 035798 122 IVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGM 201 (313)
Q Consensus 122 IIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~ 201 (313)
+|||.|+|++.+.+.+++.|..++.++..+.|.|++|||||+ +.++..|++.|+.++.||.+++.|.|+|+
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~---------~~~~~~i~~~l~~~~kpvva~~~g~~~s~ 71 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGR---------VDAGMNIVDALQASRKPVIAYVGGQAASA 71 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcC---------HHHHHHHHHHHHHhCCCEEEEECChhHHH
Confidence 589999999999999999999999877789999999999998 58999999999999999999999999999
Q ss_pred HHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccH
Q 035798 202 ACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDS 281 (313)
Q Consensus 202 AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA 281 (313)
|++|+++|++ |++.|++++++|+|..+..+..+..+.++..+.+..+.+.+.+.+++++|++.+++.+++.++.||+|
T Consensus 72 g~~la~~~d~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a 149 (161)
T cd00394 72 GYYIATAANK--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTA 149 (161)
T ss_pred HHHHHhCCCE--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcH
Confidence 9999999997 99999999999999876666445578888888999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEE
Q 035798 282 RRAKEFGVIDKV 293 (313)
Q Consensus 282 ~EAleyGLID~I 293 (313)
+||+++||||+|
T Consensus 150 ~eA~~~GLvD~i 161 (161)
T cd00394 150 QEALEYGLVDAL 161 (161)
T ss_pred HHHHHcCCcCcC
Confidence 999999999986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.94 E-value=1.1e-25 Score=200.21 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=141.6
Q ss_pred EEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCCeEEEEEc---ccc
Q 035798 122 IVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAV---GAA 198 (313)
Q Consensus 122 IIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~---G~A 198 (313)
+|.|.|+|++..++.+..+|..++.+ +.+.|.|+||||||+ ++++..||+.|+.++.||.+.|. |.|
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~---------v~~~~~i~~~l~~~~kPvia~v~~~~G~A 72 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGL---------LDSTREIVQAILASPVPVVVYVYPSGARA 72 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCC---------HHHHHHHHHHHHhCCCCEEEEEecCCCCc
Confidence 67899999999999999999998854 478899999999998 69999999999999999999998 999
Q ss_pred hhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCcc
Q 035798 199 IGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYH 278 (313)
Q Consensus 199 aS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~ 278 (313)
+|+|++|+++|++ |++.|+++|++|+|..+..+ ...+...+.+.+...+. ....|++++|++.+.+++++.+++|
T Consensus 73 asgG~~iala~D~--iva~p~a~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~ 147 (187)
T cd07020 73 ASAGTYILLAAHI--AAMAPGTNIGAAHPVAIGGG--GGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLS 147 (187)
T ss_pred hhHHHHHHHhCCc--eeECCCCcEEeccccccCCC--CcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCe
Confidence 9999999999998 99999999999999844332 23345555666666654 5778999999999999999999999
Q ss_pred ccHHHHHHcCCceEEecCC
Q 035798 279 MDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 279 lsA~EAleyGLID~Ii~~~ 297 (313)
|+++||+++||||+|++..
T Consensus 148 ~~a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 148 LTAEEALKLGVIDLIAADL 166 (187)
T ss_pred ecHHHHHHcCCcccccCCH
Confidence 9999999999999999765
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.90 E-value=9.3e-23 Score=181.57 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=134.8
Q ss_pred EEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCCeEEEEEcccchhH
Q 035798 122 IVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGM 201 (313)
Q Consensus 122 IIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~ 201 (313)
+|.+.|+|++..+..+...|-....+ +.+.|.|+||||||. ++++..||+.|+.++.||.+++-|.|+|+
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspGG~---------v~~~~~I~~~l~~~~~pvva~V~g~AaSa 72 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPGGR---------VDSALEIVDLILNSPIPTIAYVNDRAASA 72 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCC---------HHHHHHHHHHHHhCCCCEEEEECCchHHH
Confidence 57799999999988888877666654 478999999999998 69999999999999999999999999999
Q ss_pred HHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCC-----
Q 035798 202 ACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRP----- 276 (313)
Q Consensus 202 AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd----- 276 (313)
|++|++++++ ++|.|+++++.|+|.....+ ...+ -| +...-..+.+-||+++|++.+.++.+++++
T Consensus 73 G~~ia~a~d~--i~m~p~a~iG~~~~v~~~~~--~~~~----~K-~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~ 143 (178)
T cd07021 73 GALIALAADE--IYMAPGATIGAAEPIPGDGN--GAAD----EK-VQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPG 143 (178)
T ss_pred HHHHHHhCCe--EEECCCCeEecCeeEcCCCc--cchh----HH-HHHHHHHHHHHHHHHhCCCHHHHHHHhhhhccccc
Confidence 9999999997 99999999999999854332 2222 12 233334445679999999999999999999
Q ss_pred --------ccccHHHHHHcCCceEEecCCcc
Q 035798 277 --------YHMDSRRAKEFGVIDKVLWRGQE 299 (313)
Q Consensus 277 --------~~lsA~EAleyGLID~Ii~~~~~ 299 (313)
.|||++||+++|++|.|..+.++
T Consensus 144 ~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ 174 (178)
T cd07021 144 VGIKGGELLTLTADEALKVGYAEGIAGSLDE 174 (178)
T ss_pred ccccccceeeeCHHHHHHhCCeEEEECCHHH
Confidence 59999999999999999987654
No 20
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.74 E-value=9e-17 Score=145.22 Aligned_cols=163 Identities=20% Similarity=0.132 Sum_probs=131.4
Q ss_pred EEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcC--CeEEEEEcccch
Q 035798 122 IVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMK--CEVHTVAVGAAI 199 (313)
Q Consensus 122 IIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~--~~V~Tv~~G~Aa 199 (313)
+|.|.|+|+ .+.+.+...|..+...+..+.|.|.+|||||+ +..+..|++.|+.++ .||.+++.|.|+
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~---------~~~~~~l~~~i~~~~~~kpvia~v~g~a~ 73 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGT---------VVASEEIYEKLKKLKAKKPVVASMGGVAA 73 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCC---------HHHHHHHHHHHHHhcCCCCEEEEECCccc
Confidence 688999998 55677888888777666678999999999998 478899999999998 999999999999
Q ss_pred hHHHHHHhcCCCCcEeeecCceEEEeCCCCC------------C------CC----------CCCHHHHHHHHHHHHHHH
Q 035798 200 GMACLLLAAGTKGKRFMMPHAKIMIQQPRLP------------S------SG----------LLPASDVLIRAKEAMVNR 251 (313)
Q Consensus 200 S~AalLLaAG~kGkR~alPnS~iMIHqP~~g------------~------~G----------~g~asDi~i~akel~~~r 251 (313)
|.|.+|++++++ |++.|++.+....+... . .| ..+..+-+..-..++...
T Consensus 74 s~g~~la~aaD~--i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~ 151 (207)
T TIGR00706 74 SGGYYIAMAADE--IVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESY 151 (207)
T ss_pred hHHHHHHhcCCE--EEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999997 99999998643222110 0 01 112334444455667788
Q ss_pred HHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 252 DTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 252 ~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+.+.+.+++..|++.++++++++... ++++||+++||||+|....
T Consensus 152 ~~f~~~va~~R~~~~~~~~~~~~~~~-~~~~~A~~~gLvD~i~~~~ 196 (207)
T TIGR00706 152 EQFVQVVAKGRNLPVEDVKKFADGRV-FTGRQALKLRLVDKLGTED 196 (207)
T ss_pred HHHHHHHHhcCCCCHHHHHHHhcCCc-ccHHHHHHcCCCcccCCHH
Confidence 88999999999999999999888765 5999999999999998754
No 21
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.73 E-value=7.8e-17 Score=145.12 Aligned_cols=164 Identities=20% Similarity=0.148 Sum_probs=133.6
Q ss_pred EEEEcCccC---HHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhc---CCeEEEEEc
Q 035798 122 IVYIGMPLV---PAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQM---KCEVHTVAV 195 (313)
Q Consensus 122 IIfL~g~Id---~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i---~~~V~Tv~~ 195 (313)
+|++.|+|+ +.+...+..+|..+..++..+.|.|++|||||++ ..+..|++.++.+ +.||.+++-
T Consensus 4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~---------~~~~~i~~~i~~~~~~~kpvia~v~ 74 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSV---------VASEEIYREIRRLRKAKKPVVASMG 74 (208)
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCH---------HHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 688999999 7899999999999988777899999999999984 6677888888765 469999999
Q ss_pred ccchhHHHHHHhcCCCCcEeeecCceEE------Ee------------CCCCCCCC----------CCCHHHHHHHHHHH
Q 035798 196 GAAIGMACLLLAAGTKGKRFMMPHAKIM------IQ------------QPRLPSSG----------LLPASDVLIRAKEA 247 (313)
Q Consensus 196 G~AaS~AalLLaAG~kGkR~alPnS~iM------IH------------qP~~g~~G----------~g~asDi~i~akel 247 (313)
|.|+|+|..|++++++ |++.|++++. .| ++.....| ..+..+.+.....+
T Consensus 75 g~~~s~g~~lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l 152 (208)
T cd07023 75 DVAASGGYYIAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALV 152 (208)
T ss_pred CcchhHHHHHHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHH
Confidence 9999999999999997 9999999883 33 11110011 11334555556677
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 248 MVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 248 ~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
....+.+.+.+++..|++.+++.+..+...| +++||+++||||+|....
T Consensus 153 ~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~-~a~~A~~~gLiD~i~~~~ 201 (208)
T cd07023 153 DDIYDQFVDVVAEGRGMSGERLDKLADGRVW-TGRQALELGLVDELGGLD 201 (208)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHhcCCcEE-EHHHHHHcCCCcccCCHH
Confidence 7888899999999999999999988887665 799999999999998643
No 22
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.70 E-value=3.3e-16 Score=137.78 Aligned_cols=144 Identities=15% Similarity=0.036 Sum_probs=120.2
Q ss_pred HHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHH---hcCCeEEEEEcccchhHHHHHHhcC
Q 035798 133 VTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLM---QMKCEVHTVAVGAAIGMACLLLAAG 209 (313)
Q Consensus 133 ~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~---~i~~~V~Tv~~G~AaS~AalLLaAG 209 (313)
+.+.+...|..++..+..+-|.|.+|||||++ .....+++.++ ..+.||.+++-|.|+|.|..|++++
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~---------~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~ 93 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSV---------TASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPA 93 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCH---------HHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhC
Confidence 45678888888877666788999999999984 45556666554 4468999999999999999999999
Q ss_pred CCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCC
Q 035798 210 TKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGV 289 (313)
Q Consensus 210 ~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGL 289 (313)
+. |++.|+++|++|..+.+ .+.....+..+.+.+.+.+++..|++.+++.+++....+|+|+||+++||
T Consensus 94 D~--i~a~~~a~~~~~G~~~~---------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GL 162 (177)
T cd07014 94 NY--IVANPSTLVGSIGIFGV---------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGL 162 (177)
T ss_pred CE--EEECCCCeEEEechHhh---------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCC
Confidence 98 99999999999976532 11123456678889999999999999999999999999999999999999
Q ss_pred ceEEecC
Q 035798 290 IDKVLWR 296 (313)
Q Consensus 290 ID~Ii~~ 296 (313)
||+|...
T Consensus 163 VD~v~~~ 169 (177)
T cd07014 163 VDSLGSF 169 (177)
T ss_pred cccCCCH
Confidence 9999974
No 23
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.65 E-value=3.5e-15 Score=135.40 Aligned_cols=153 Identities=18% Similarity=0.097 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcC--CeEEEEEcccchhHHHHHHhcC
Q 035798 132 AVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMK--CEVHTVAVGAAIGMACLLLAAG 209 (313)
Q Consensus 132 ~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~--~~V~Tv~~G~AaS~AalLLaAG 209 (313)
.+...++..|..+...+..+.|.|.+|||||+ +.....|++.|+.++ .||.+++.|.|+|.|..|++++
T Consensus 25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~---------~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~a 95 (214)
T cd07022 25 TSYEGIAAAIRAALADPDVRAIVLDIDSPGGE---------VAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAA 95 (214)
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCc---------HHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcC
Confidence 45778899898888777788999999999998 467778999999887 9999999999999999999999
Q ss_pred CCCcEeeecCceEE------EeCCCC------CC------CC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035798 210 TKGKRFMMPHAKIM------IQQPRL------PS------SG----------LLPASDVLIRAKEAMVNRDTLVKLLAKH 261 (313)
Q Consensus 210 ~kGkR~alPnS~iM------IHqP~~------g~------~G----------~g~asDi~i~akel~~~r~~l~~i~A~~ 261 (313)
++ +++.|++++. .|.... |. .| ..+..+-+...+.+..+.+.+.+.+++.
T Consensus 96 D~--i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~ 173 (214)
T cd07022 96 DR--IVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARN 173 (214)
T ss_pred CE--EEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 97 9999999963 222210 00 11 1233444555566677888999999999
Q ss_pred hCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 262 TGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 262 TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.|++.+++.+.+ ...++++||+++||||+|....
T Consensus 174 R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~ 207 (214)
T cd07022 174 RGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLD 207 (214)
T ss_pred CCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHH
Confidence 999999999888 6668999999999999998644
No 24
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.65 E-value=2.8e-15 Score=154.74 Aligned_cols=163 Identities=16% Similarity=0.064 Sum_probs=132.2
Q ss_pred EEEEcCccCHH-------HHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhc---CCeEE
Q 035798 122 IVYIGMPLVPA-------VTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQM---KCEVH 191 (313)
Q Consensus 122 IIfL~g~Id~~-------~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i---~~~V~ 191 (313)
+|++.|+|.+. ..+.+..+|..+..++..+.|.|+||||||+ ++++..|++.|+.. +.||.
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs---------~~ase~i~~~i~~~~~~gKPVv 382 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGS---------VFASEIIRRELARAQARGKPVI 382 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCC---------HHHHHHHHHHHHHHHhCCCcEE
Confidence 78999999752 2456777777666656678999999999998 58899999998855 47899
Q ss_pred EEEcccchhHHHHHHhcCCCCcEeeecCceE------EEeCCC------CCC------CC---------CCCHHHHHHHH
Q 035798 192 TVAVGAAIGMACLLLAAGTKGKRFMMPHAKI------MIQQPR------LPS------SG---------LLPASDVLIRA 244 (313)
Q Consensus 192 Tv~~G~AaS~AalLLaAG~kGkR~alPnS~i------MIHqP~------~g~------~G---------~g~asDi~i~a 244 (313)
+.+.|.|+|.|.+|.++|++ +++.|++.+ +.+... .|. .| ..+..+.++..
T Consensus 383 a~~~g~aaSggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~ 460 (584)
T TIGR00705 383 VSMGAMAASGGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQ 460 (584)
T ss_pred EEECCccccHHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999997 999999987 554210 000 01 12566677778
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecC
Q 035798 245 KEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWR 296 (313)
Q Consensus 245 kel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~ 296 (313)
..+++..+.+.+.+++..|++.++++.+.+...| +++||+++||||+|..-
T Consensus 461 ~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~-tg~eA~~~GLVD~ig~~ 511 (584)
T TIGR00705 461 LSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVW-TGEDAVSNGLVDALGGL 511 (584)
T ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCc-CHHHHHHcCCcccCCCH
Confidence 8888999999999999999999999998887555 99999999999999764
No 25
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.60 E-value=3.3e-14 Score=128.86 Aligned_cols=164 Identities=16% Similarity=0.084 Sum_probs=124.9
Q ss_pred EEEEcCccCHHH-------HHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHH---hcCCeEE
Q 035798 122 IVYIGMPLVPAV-------TELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLM---QMKCEVH 191 (313)
Q Consensus 122 IIfL~g~Id~~~-------a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~---~i~~~V~ 191 (313)
+|.+.|+|.+.. ...+...|..+..++..+.|.|.+|||||++ .....|++.|+ ..+.||.
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~---------~~~~~~~~~l~~~~~~~kpVi 74 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSV---------TASEVIRAELAAARAAGKPVV 74 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCH---------HHHHHHHHHHHHHHhCCCCEE
Confidence 456666666522 3678888888877666799999999999994 66667777655 4567999
Q ss_pred EEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCC------------CCC------C-C--------CCCHHHHHHHH
Q 035798 192 TVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPR------------LPS------S-G--------LLPASDVLIRA 244 (313)
Q Consensus 192 Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~------------~g~------~-G--------~g~asDi~i~a 244 (313)
+++.|.|+|.|..|.+++++ +++.|++++...-.. .|. . | ..+..+-+...
T Consensus 75 a~v~g~a~s~gy~la~~aD~--i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~ 152 (211)
T cd07019 75 VSAGGAAASGGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQ 152 (211)
T ss_pred EEECCeehhHHHHHHHhCCE--EEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHH
Confidence 99999999999999999998 999999988433211 000 0 1 01233333444
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 245 KEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 245 kel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
..+++..+.+.+.++++.+++.+++.+..+ +.+++++||+++||||+|....
T Consensus 153 ~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~~~ 204 (211)
T cd07019 153 LSIENGYKRFITLVADARHSTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDFD 204 (211)
T ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHhcC-CcEEeHHHHHHcCCcccCCCHH
Confidence 667888899999999999999999988554 5799999999999999998754
No 26
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.58 E-value=2.8e-14 Score=137.34 Aligned_cols=164 Identities=20% Similarity=0.123 Sum_probs=125.8
Q ss_pred EEEEcCccCHHH-------HHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCC--eEEE
Q 035798 122 IVYIGMPLVPAV-------TELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKC--EVHT 192 (313)
Q Consensus 122 IIfL~g~Id~~~-------a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~--~V~T 192 (313)
+|.+.|.|.... .+.+.+.|-.+...+..+.|.|.||||||+ |.+...||+.++.++. ||++
T Consensus 63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~---------v~as~~i~~~l~~l~~~~PV~v 133 (317)
T COG0616 63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGS---------VVASELIARALKRLRAKKPVVV 133 (317)
T ss_pred EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCc---------hhHHHHHHHHHHHHhhcCCEEE
Confidence 466777776433 455555565666667789999999999999 5999999999999975 5999
Q ss_pred EEcccchhHHHHHHhcCCCCcEeeecCceEE------EeCCCC------CC------CC----------CCCHHHHHHHH
Q 035798 193 VAVGAAIGMACLLLAAGTKGKRFMMPHAKIM------IQQPRL------PS------SG----------LLPASDVLIRA 244 (313)
Q Consensus 193 v~~G~AaS~AalLLaAG~kGkR~alPnS~iM------IHqP~~------g~------~G----------~g~asDi~i~a 244 (313)
++-++|||.|.+|.+++++ .+|.|+|.+. .|.... |. .| ..+..+.++.-
T Consensus 134 ~v~~~AASGGY~IA~aAd~--I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q 211 (317)
T COG0616 134 SVGGYAASGGYYIALAADK--IVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQ 211 (317)
T ss_pred EECCeecchhhhhhccCCE--EEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHH
Confidence 9999999999999999998 9999999874 111100 00 01 11334445555
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 245 KEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 245 kel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
++++...+.+.+.+++..+.+.+++.+ ......+++++|++.||||++.+..
T Consensus 212 ~~~~e~y~~F~~~V~~~R~~~~~~~~~-~a~g~v~~g~~A~~~gLVDelg~~~ 263 (317)
T COG0616 212 KEIDETYDEFVDKVAEGRGLSDEAVDK-LATGRVWTGQQALELGLVDELGGLD 263 (317)
T ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHH-HhccceecHHHhhhcCCchhcCCHH
Confidence 778888899999999999999999554 4555777899999999999998743
No 27
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.42 E-value=4e-12 Score=116.16 Aligned_cols=158 Identities=14% Similarity=0.033 Sum_probs=124.3
Q ss_pred CccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhc---CCeEEEEEcccchhHHH
Q 035798 127 MPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQM---KCEVHTVAVGAAIGMAC 203 (313)
Q Consensus 127 g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i---~~~V~Tv~~G~AaS~Aa 203 (313)
+..+......++.+|..+..++..+-|.|.+|||||+ +.+.-.|++.|+.+ +.||.+++.| |+|.|.
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~---------~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy 93 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGG---------LAKLEELRQALERFRASGKPVIAYADG-YSQGQY 93 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCC---------HHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhh
Confidence 4445667788999999888776789999999999998 47788899888754 5799998887 899999
Q ss_pred HHHhcCCCCcEeeecCceEEEeCCCCCCC------------------C------------CCCHHHHHHHHHHHHHHHHH
Q 035798 204 LLLAAGTKGKRFMMPHAKIMIQQPRLPSS------------------G------------LLPASDVLIRAKEAMVNRDT 253 (313)
Q Consensus 204 lLLaAG~kGkR~alPnS~iMIHqP~~g~~------------------G------------~g~asDi~i~akel~~~r~~ 253 (313)
+|.+++++ +++.|++.+.++-...... | ..+..+-+..-+.+..+.+.
T Consensus 94 ~lasaad~--I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~ 171 (222)
T cd07018 94 YLASAADE--IYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQ 171 (222)
T ss_pred hhhhhCCE--EEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHH
Confidence 99999997 9999999999874432100 0 01222333334555667888
Q ss_pred HHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 254 LVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 254 l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+.+.+++..|++.+++++..+ ...+++++|++.||||+|....
T Consensus 172 f~~~Va~~R~~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~~~ 214 (222)
T cd07018 172 YLADVAASRGLSPDALEALID-LGGDSAEEALEAGLVDGLAYRD 214 (222)
T ss_pred HHHHHHHHcCCCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCcHH
Confidence 999999999999999998877 5788999999999999998654
No 28
>PRK10949 protease 4; Provisional
Probab=99.40 E-value=5.4e-12 Score=131.31 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=127.2
Q ss_pred EEEEcCccCHH-------HHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhc---CCeEE
Q 035798 122 IVYIGMPLVPA-------VTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQM---KCEVH 191 (313)
Q Consensus 122 IIfL~g~Id~~-------~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i---~~~V~ 191 (313)
+|++.|.|.+. ..+.++.+|..+..++..+.|.|.||||||+ +.+...|++.|+.. +.||.
T Consensus 330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs---------~~ase~i~~~i~~~r~~gKPVv 400 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS---------VTASEVIRAELAAARAAGKPVV 400 (618)
T ss_pred EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCc---------HHHHHHHHHHHHHHHhcCCcEE
Confidence 68899999752 3567888888887778899999999999999 58899999999755 47999
Q ss_pred EEEcccchhHHHHHHhcCCCCcEeeecCceEE------EeCCC------CCC------CC---------CCCHHHHHHHH
Q 035798 192 TVAVGAAIGMACLLLAAGTKGKRFMMPHAKIM------IQQPR------LPS------SG---------LLPASDVLIRA 244 (313)
Q Consensus 192 Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iM------IHqP~------~g~------~G---------~g~asDi~i~a 244 (313)
+.+.|+|||.|.+|.+++++ .++.|.+.+. .|.-. .|. .| ..+..+-+..-
T Consensus 401 as~~~~aASggY~iA~aad~--I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q 478 (618)
T PRK10949 401 VSMGGMAASGGYWISTPANY--IVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQ 478 (618)
T ss_pred EEECCCCccHHHHHHHhcCE--EEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHH
Confidence 99999999999999999997 9999987643 23210 000 00 01223334444
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 245 KEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 245 kel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
..++...+.+.+..|+..|++.+++++..+ .+.++++||+++||||+|..-.
T Consensus 479 ~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~-Grv~tg~~A~~~GLVD~lG~~~ 530 (618)
T PRK10949 479 LSIENGYKRFITLVADSRHKTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDFD 530 (618)
T ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHhc-CCcccHHHHHHcCCCccCCCHH
Confidence 566677888999999999999999987654 4789999999999999998743
No 29
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.38 E-value=1.1e-11 Score=120.25 Aligned_cols=161 Identities=11% Similarity=0.039 Sum_probs=108.2
Q ss_pred EEEEcCccCHHHHHHHHHHHhhc-hhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHH---HHHHhcCCeEEEEEccc
Q 035798 122 IVYIGMPLVPAVTELVVAELMYL-QWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIY---DTLMQMKCEVHTVAVGA 197 (313)
Q Consensus 122 IIfL~g~Id~~~a~~iiaqLl~L-~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIY---Dtm~~i~~~V~Tv~~G~ 197 (313)
+|.+.|.|+...+..+..++..+ ....+.+.|.|.||||||++ ...--++ ..++..+.||++++.++
T Consensus 94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v---------~~s~~a~~~l~~lr~~~kpVva~v~~~ 164 (330)
T PRK11778 94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVV---------HGYGLAASQLQRLRDAGIPLTVAVDKV 164 (330)
T ss_pred EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCch---------hHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 56788999976554443333322 12223367999999999984 3322222 34455567999999999
Q ss_pred chhHHHHHHhcCCCCcEeeecCceEEEeCCCCCC------------------C----------CCCCHHHHHHHHHHHHH
Q 035798 198 AIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS------------------S----------GLLPASDVLIRAKEAMV 249 (313)
Q Consensus 198 AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~------------------~----------G~g~asDi~i~akel~~ 249 (313)
|+|.|.+|.+++++ .++.|.+.+...-..... . +..+..+-+..-.+++.
T Consensus 165 AASggY~iAsaAD~--I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~ 242 (330)
T PRK11778 165 AASGGYMMACVADK--IIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEE 242 (330)
T ss_pred hhhHHHHHHHhCCE--EEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999987 999999988643322100 0 11123344455566677
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 250 NRDTLVKLLAKHTG-NSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 250 ~r~~l~~i~A~~TG-~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
..+.+.+.++++.+ .+.++ ..+. ..++++||+++||||+|....
T Consensus 243 ~y~~F~~~Va~~R~~l~~~~---va~G-~v~~g~~Al~~GLVD~Ig~~d 287 (330)
T PRK11778 243 THQLFKDFVQRYRPQLDIDK---VATG-EHWYGQQALELGLVDEIQTSD 287 (330)
T ss_pred HHHHHHHHHHhcCCcCCHHH---HHhC-CCcCHHHHHHCCCCCcCCCHH
Confidence 77888888888765 44444 4444 457899999999999998754
No 30
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.7e-11 Score=119.05 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=131.8
Q ss_pred EEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCCeEEEEEc---ccc
Q 035798 122 IVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAV---GAA 198 (313)
Q Consensus 122 IIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~---G~A 198 (313)
+|.+.|+|++.+++.+...|-..+.++ ...+.|.+|+|||- +.+...|...+...+.||..|+. +.|
T Consensus 30 vi~i~g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTPGGl---------~~sm~~iv~~i~~s~vPV~~yv~p~ga~A 99 (436)
T COG1030 30 VIEIDGAIDPASADYLQRALQSAEEEN-AAAVVLELDTPGGL---------LDSMRQIVRAILNSPVPVIGYVVPDGARA 99 (436)
T ss_pred EEEecCccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCCCch---------HHHHHHHHHHHHcCCCCEEEEEcCCCcch
Confidence 678999999999999999887766544 57899999999987 69999999999999999888874 579
Q ss_pred hhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCcc
Q 035798 199 IGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYH 278 (313)
Q Consensus 199 aS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~ 278 (313)
+|+|++|+++.+. -+|.|++.+.--+|-.+. | ++.+- +. ....-....+-+|+..|+..+-.++...++.-
T Consensus 100 aSAGtyI~m~~hi--aaMAPgT~iGaa~Pi~~~-g--~~~~~---~~-~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~ 170 (436)
T COG1030 100 ASAGTYILMATHI--AAMAPGTNIGAATPIAGG-G--TSAKE---AN-TTNAAVAYIRSLAEERGRNPTWAERFVTENLS 170 (436)
T ss_pred hchhhHHHHhcCh--hhhCCCCcccccceecCC-C--CCccc---hh-hHHHHHHHHHHHHHHcCCChHHHHHHhhhccC
Confidence 9999999999997 899999999999997432 2 22221 11 23333445567899999999999999999999
Q ss_pred ccHHHHHHcCCceEEecCCcc
Q 035798 279 MDSRRAKEFGVIDKVLWRGQE 299 (313)
Q Consensus 279 lsA~EAleyGLID~Ii~~~~~ 299 (313)
++++||.++|+||-|..+..|
T Consensus 171 l~a~eA~~~~vid~iA~~~~e 191 (436)
T COG1030 171 LTAEEALRQGVIDLIARDLNE 191 (436)
T ss_pred CChhHHHhcCccccccCCHHH
Confidence 999999999999999876654
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.17 E-value=8e-10 Score=104.83 Aligned_cols=145 Identities=22% Similarity=0.259 Sum_probs=108.4
Q ss_pred cCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCCeEEEEEcccchhHHHHH
Q 035798 126 GMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLL 205 (313)
Q Consensus 126 ~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~AalL 205 (313)
...|+.+.++.+...+-.. ++.++|.|.||||||. |.++..|.+.++..+.+++.++-..|.|+|++|
T Consensus 69 ~~~I~i~dse~v~raI~~~---~~~~~IdLii~TpGG~---------v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlI 136 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREA---PKDKPIDLIIHTPGGL---------VDAAEQIARALREHPAKVTVIVPHYAMSAGTLI 136 (285)
T ss_pred ceeEcHhhHHHHHHHHHhc---CCCCceEEEEECCCCc---------HHHHHHHHHHHHhCCCCEEEEECcccccHHHHH
Confidence 3457888888887776544 4457899999999998 699999999999999999999999999999999
Q ss_pred HhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHH--------------------HHHHHHHHHHHHHHHHHHHHhCCC
Q 035798 206 LAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVL--------------------IRAKEAMVNRDTLVKLLAKHTGNS 265 (313)
Q Consensus 206 LaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~--------------------i~akel~~~r~~l~~i~A~~TG~s 265 (313)
.+++++ -+|.|+|.+.--.|..+.. .+..+. +.-|.+.+.++.+.+++..+. +
T Consensus 137 ALaADe--IvM~p~a~LGpiDPqi~~~---pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~~~--~ 209 (285)
T PF01972_consen 137 ALAADE--IVMGPGAVLGPIDPQIGQY---PAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKDKM--D 209 (285)
T ss_pred HHhCCe--EEECCCCccCCCCccccCC---ChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--C
Confidence 999998 9999999998777765321 221110 112344455566666675544 4
Q ss_pred HHHH---HHhh-----cCCccccHHHHHHcCC
Q 035798 266 EEFV---TKTI-----RRPYHMDSRRAKEFGV 289 (313)
Q Consensus 266 ~e~I---~~~~-----~rd~~lsA~EAleyGL 289 (313)
.++. .+.+ .-|+-++++||+++||
T Consensus 210 ~eka~~ia~~L~~g~~tHdypi~~eea~~lGL 241 (285)
T PF01972_consen 210 EEKAEEIAEKLSSGKWTHDYPITVEEAKELGL 241 (285)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHHHcCC
Confidence 4444 3333 3477799999999998
No 32
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.85 E-value=1.6e-08 Score=87.65 Aligned_cols=112 Identities=19% Similarity=0.092 Sum_probs=81.2
Q ss_pred HHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCC------------------CC----------C
Q 035798 183 LMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS------------------SG----------L 234 (313)
Q Consensus 183 m~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~------------------~G----------~ 234 (313)
.+..+.||++++.|.|+|.+.+|+++|++ .++.|.+.+...-..... .| .
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 35667899999999999999999999997 999999998754332100 01 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 235 LPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 235 g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.+..+-+..-+.+....+.+.+.+++..|++.+++.++.+. ..++++||+++||||+|....
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~~~ 141 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGTFD 141 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETSHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCCHH
Confidence 12334444456667788889999999999999999988877 888999999999999998644
No 33
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.62 E-value=4.4e-07 Score=94.30 Aligned_cols=156 Identities=7% Similarity=-0.063 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhhchhcCCCCCEEEEEcCC-CCCCCCCCCccccchHHHHHHHHHhc---CCeEEEEEcccchhHHHHHH
Q 035798 131 PAVTELVVAELMYLQWMDPKAPIYLYINST-GTTRDDGESVGMESEGFAIYDTLMQM---KCEVHTVAVGAAIGMACLLL 206 (313)
Q Consensus 131 ~~~a~~iiaqLl~L~~~d~~k~I~LyINSP-GGsv~~~e~vg~v~aGlAIYDtm~~i---~~~V~Tv~~G~AaS~AalLL 206 (313)
+.....++.+|.....++..+.|.|.||++ ||+ +...-.|++.|+.. +.||.++..+. +|.+.+|.
T Consensus 75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~---------~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylA 144 (584)
T TIGR00705 75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWD---------SPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLA 144 (584)
T ss_pred CcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCC---------HHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhh
Confidence 345678999998888888889999999975 555 35566899998866 48899987654 68888888
Q ss_pred hcCCCCcEeeecCceEEEeCCCCCC------------------CC------------CCCHHHHHHHHHHHHHHHHHHHH
Q 035798 207 AAGTKGKRFMMPHAKIMIQQPRLPS------------------SG------------LLPASDVLIRAKEAMVNRDTLVK 256 (313)
Q Consensus 207 aAG~kGkR~alPnS~iMIHqP~~g~------------------~G------------~g~asDi~i~akel~~~r~~l~~ 256 (313)
+++++ .|+.|.+.+.++-..... .| ..+..+-+..-..+..+.+.+.+
T Consensus 145 s~AD~--I~~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~ 222 (584)
T TIGR00705 145 SFADE--IILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLS 222 (584)
T ss_pred hhCCE--EEECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88887 999999999776442210 01 11233333344555677888899
Q ss_pred HHHHHhCCCHHHHHHhhcCCcc-------ccHHHHHHcCCceEEecCCc
Q 035798 257 LLAKHTGNSEEFVTKTIRRPYH-------MDSRRAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 257 i~A~~TG~s~e~I~~~~~rd~~-------lsA~EAleyGLID~Ii~~~~ 298 (313)
.+|+..+++.+++.+..+.-.| .+|++|++.||||+|....+
T Consensus 223 ~Va~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~de 271 (584)
T TIGR00705 223 SVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYAE 271 (584)
T ss_pred HHHHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHHH
Confidence 9999999999999988776444 28999999999999987543
No 34
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.52 E-value=1.3e-06 Score=76.64 Aligned_cols=144 Identities=18% Similarity=0.159 Sum_probs=95.7
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCc--------------cccchHHHHHHHHHhcCCeEEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESV--------------GMESEGFAIYDTLMQMKCEVHTVA 194 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~v--------------g~v~aGlAIYDtm~~i~~~V~Tv~ 194 (313)
++.++.+.+...|..++..+..+ .+.|.+.|+.+..|--+ ..+.....++..+..++.|+.+.+
T Consensus 23 ~~~~~~~~l~~~l~~~~~d~~~~--~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v 100 (195)
T cd06558 23 LSLEMLDELAAALDEAEADPDVR--VVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAV 100 (195)
T ss_pred CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 57788888888888877533333 33333334433222100 112334556667777889999999
Q ss_pred cccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Q 035798 195 VGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTI 273 (313)
Q Consensus 195 ~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~ 273 (313)
-|.|.+.|+.++++++- |++.++++|.+.....|.. +.+.. ..+.+..| .....+.+
T Consensus 101 ~G~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~~p~~g~~------------------~~l~~~~g--~~~a~~~~ 158 (195)
T cd06558 101 NGAALGGGLELALACDI--RIAAEDAKFGLPEVKLGLVPGGGGT------------------QRLPRLVG--PARARELL 158 (195)
T ss_pred CCeeecHHHHHHHhCCE--EEecCCCEEechhhhcCCCCCCcHH------------------HHHHHHhC--HHHHHHHH
Confidence 99999999999999997 9999999999887765432 11111 11222223 23334455
Q ss_pred cCCccccHHHHHHcCCceEEecC
Q 035798 274 RRPYHMDSRRAKEFGVIDKVLWR 296 (313)
Q Consensus 274 ~rd~~lsA~EAleyGLID~Ii~~ 296 (313)
-....++++||+++||||+|+..
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPD 181 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecCh
Confidence 55788899999999999999986
No 35
>PRK10949 protease 4; Provisional
Probab=98.51 E-value=1.4e-06 Score=91.31 Aligned_cols=157 Identities=9% Similarity=-0.027 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcC---CeEEEEEcccchhHHHHHHh
Q 035798 131 PAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMK---CEVHTVAVGAAIGMACLLLA 207 (313)
Q Consensus 131 ~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~---~~V~Tv~~G~AaS~AalLLa 207 (313)
+.....++..|.....++..+.|.|.||||||.. ....-.|++.|+..+ .||..+ ...+++.+.+|.+
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~--------~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLAS 164 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGAD--------QPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLAS 164 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCcc--------HHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhh
Confidence 4556678888888888788899999999998862 123357888887664 688876 4444577777777
Q ss_pred cCCCCcEeeecCceEEEeCCCCCC------------------CC------------CCCHHHHHHHHHHHHHHHHHHHHH
Q 035798 208 AGTKGKRFMMPHAKIMIQQPRLPS------------------SG------------LLPASDVLIRAKEAMVNRDTLVKL 257 (313)
Q Consensus 208 AG~kGkR~alPnS~iMIHqP~~g~------------------~G------------~g~asDi~i~akel~~~r~~l~~i 257 (313)
++++ .|+.|.+.+.++-..... .| ..+..+-+..-..+..+.+.+.+.
T Consensus 165 aAD~--I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~ 242 (618)
T PRK10949 165 FANK--IYLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNT 242 (618)
T ss_pred hCCE--EEECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7876 999999999877643320 01 111222222233445677888889
Q ss_pred HHHHhCCCHHHHHHhhcC-------CccccHHHHHHcCCceEEecCCc
Q 035798 258 LAKHTGNSEEFVTKTIRR-------PYHMDSRRAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 258 ~A~~TG~s~e~I~~~~~r-------d~~lsA~EAleyGLID~Ii~~~~ 298 (313)
+|+..+++.+++....++ .--++|++|++.||||+|....+
T Consensus 243 VA~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~de 290 (618)
T PRK10949 243 VAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSAE 290 (618)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHHH
Confidence 999999999999644332 12359999999999999987653
No 36
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.28 E-value=6.7e-06 Score=75.45 Aligned_cols=147 Identities=17% Similarity=0.089 Sum_probs=97.6
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc------------chHHHHHHHHHhcCCeEEEEEcc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME------------SEGFAIYDTLMQMKCEVHTVAVG 196 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v------------~aGlAIYDtm~~i~~~V~Tv~~G 196 (313)
++.++.+.+...|..++.++..+ .+.|.+.|+.+..|--+..+ .....++..|..++.||.+.+-|
T Consensus 22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G 99 (245)
T PF00378_consen 22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG 99 (245)
T ss_dssp BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence 77888999999998888654333 56666666665433222111 23356677788888999999999
Q ss_pred cchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCC
Q 035798 197 AAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRP 276 (313)
Q Consensus 197 ~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd 276 (313)
.|.+.|+.|+++++- |++.++++|.+-....|..-.+-... .+.+..|.. ...+++-..
T Consensus 100 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G~~p~~g~~~-----------------~l~r~~g~~--~a~~l~l~g 158 (245)
T PF00378_consen 100 HAVGGGFELALACDF--RIAAEDAKFGFPEVRLGIFPGAGGTF-----------------RLPRLIGPS--RARELLLTG 158 (245)
T ss_dssp EEETHHHHHHHHSSE--EEEETTTEEETGGGGGTSSSTSTHHH-----------------HHHHHHHHH--HHHHHHHHT
T ss_pred cccccccccccccce--EEeecccceeeeecccCccccccccc-----------------ccceeeecc--ccccccccc
Confidence 999999999999997 99999999655444333221001111 122222211 222333345
Q ss_pred ccccHHHHHHcCCceEEecCCc
Q 035798 277 YHMDSRRAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 277 ~~lsA~EAleyGLID~Ii~~~~ 298 (313)
..++|+||+++||||+|+...+
T Consensus 159 ~~~~a~eA~~~Glv~~v~~~~~ 180 (245)
T PF00378_consen 159 EPISAEEALELGLVDEVVPDEE 180 (245)
T ss_dssp CEEEHHHHHHTTSSSEEESGGG
T ss_pred ccchhHHHHhhcceeEEcCchh
Confidence 6789999999999999998764
No 37
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.20 E-value=4.7e-05 Score=69.81 Aligned_cols=151 Identities=16% Similarity=0.110 Sum_probs=97.4
Q ss_pred EEEcCc----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc-----------ch-HHHHHHHHHhc
Q 035798 123 VYIGMP----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME-----------SE-GFAIYDTLMQM 186 (313)
Q Consensus 123 IfL~g~----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v-----------~a-GlAIYDtm~~i 186 (313)
|.|+.| ++.++...+...|..++.++..+ .|.|.+.|+.+..|=-+..+ .. ...++..|..+
T Consensus 21 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (222)
T PRK05869 21 LLLSRPPTNALTRQVYREIVAAANELGRRDDVA--AVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAI 98 (222)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhC
Confidence 445554 77888889998888877543322 23445555443222111100 00 12456677788
Q ss_pred CCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 035798 187 KCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNS 265 (313)
Q Consensus 187 ~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s 265 (313)
+.||.+.+-|.|.+.|..|.++++- |++.++++|.+-....|.. +.+ .. ..+.+..|
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~~~ig-- 156 (222)
T PRK05869 99 PKPTVAAITGYALGAGLTLALAADW--RVSGDNVKFGATEILAGLAPSGD-GM-----------------ARLTRAAG-- 156 (222)
T ss_pred CCCEEEEEcCEeecHHHHHHHhCCE--EEecCCCEEcCchhccCCCCCcc-HH-----------------HHHHHHhC--
Confidence 8999999999999999999999997 9999999887755544432 110 11 11222333
Q ss_pred HHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 266 EEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 266 ~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.....+++-...+++|+||+++||||+|+...
T Consensus 157 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 188 (222)
T PRK05869 157 PSRAKELVFSGRFFDAEEALALGLIDEMVAPD 188 (222)
T ss_pred HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCch
Confidence 23334455556789999999999999999754
No 38
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.19 E-value=4.3e-05 Score=71.21 Aligned_cols=150 Identities=14% Similarity=0.143 Sum_probs=99.7
Q ss_pred EEEEcCc----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccc--------------hHHHHHHHH
Q 035798 122 IVYIGMP----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMES--------------EGFAIYDTL 183 (313)
Q Consensus 122 IIfL~g~----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~--------------aGlAIYDtm 183 (313)
+|.|+.| ++.++.+.+...|..++.++..+ .|.|.+.|+.+..|--+..+. ....+++.|
T Consensus 16 ~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr--~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (257)
T PRK06495 16 VVTLDNPPVNALSRELRDELIAVFDEISERPDVR--VVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAI 93 (257)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHH
Confidence 3556665 78888889999888776533222 334455555443332221110 012355667
Q ss_pred HhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 035798 184 MQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 263 (313)
Q Consensus 184 ~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG 263 (313)
..++.||.+.+-|.|.+.|+-|.++++- |++.++++|.+-....|..| .. ..+.+..|
T Consensus 94 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~--~~------------------~~l~~~~g 151 (257)
T PRK06495 94 RECAKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAG--GG------------------KHAMRLFG 151 (257)
T ss_pred HhCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCccc--cH------------------HHHHHHhC
Confidence 7888999999999999999999999997 99999999877655544332 10 01222333
Q ss_pred CCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 264 NSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 264 ~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.....+++-....++|+||+++||||+|+...
T Consensus 152 --~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (257)
T PRK06495 152 --HSLTRRMMLTGYRVPAAELYRRGVIEACLPPE 183 (257)
T ss_pred --HHHHHHHHHcCCeeCHHHHHHcCCcceecCHH
Confidence 34455566667889999999999999999754
No 39
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.19 E-value=5.5e-05 Score=70.41 Aligned_cols=151 Identities=16% Similarity=0.147 Sum_probs=99.1
Q ss_pred EEEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCE-EEEEcCCCCCCCCCCCccc---------------cchHHHHH
Q 035798 122 IVYIGMP-----LVPAVTELVVAELMYLQWMDPKAPI-YLYINSTGTTRDDGESVGM---------------ESEGFAIY 180 (313)
Q Consensus 122 IIfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I-~LyINSPGGsv~~~e~vg~---------------v~aGlAIY 180 (313)
+|.|+.| ++.++.+.+.+.|..++.. +++ .|.|.+.|..+..|--+.. ......++
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d---~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (260)
T PRK07511 15 VLTLSNPGARNALHPDMYAAGIEALNTAERD---PSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWI 91 (260)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHhccC---CCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHH
Confidence 3556655 7788888888888777643 233 3444555544322211110 01113456
Q ss_pred HHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 035798 181 DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLA 259 (313)
Q Consensus 181 Dtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A 259 (313)
..|..++.||...+-|.|.+.|..|+++++- |++.++++|.+.....|.. +.+ .. ..+.
T Consensus 92 ~~l~~~~kpvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~ 151 (260)
T PRK07511 92 RAIRAFPKPVIAAVEGAAAGAGFSLALACDL--LVAARDAKFVMAYVKVGLTPDGG-GS-----------------WFLA 151 (260)
T ss_pred HHHHcCCCCEEEEECCeeehHHHHHHHhCCE--EEeeCCCEEeccccccCcCCCch-HH-----------------HHHH
Confidence 6777788999999999999999999999997 9999999988766554432 100 00 1122
Q ss_pred HHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 260 KHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 260 ~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+..| .....+++-....++++||+++||||+|++..
T Consensus 152 ~~vg--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 187 (260)
T PRK07511 152 RALP--RQLATELLLEGKPISAERLHALGVVNRLAEPG 187 (260)
T ss_pred HHhC--HHHHHHHHHhCCCCCHHHHHHcCCccEeeCch
Confidence 2223 33445566666799999999999999999754
No 40
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.15 E-value=5.1e-05 Score=69.45 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=92.2
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCc-----------cccchHHHHHHHHHhcCCeEEEEEccc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESV-----------GMESEGFAIYDTLMQMKCEVHTVAVGA 197 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~v-----------g~v~aGlAIYDtm~~i~~~V~Tv~~G~ 197 (313)
++.++.+.+.+.|..++ .+ . . .|.|.+.|..+..|--+ .++..+..++..|..++.||.+.+-|.
T Consensus 26 l~~~~~~~l~~~l~~~~-~~-~-~-vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 26 LSPAMIDALNAALDQAE-DD-R-A-VVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred CCHHHHHHHHHHHHHhh-cc-C-c-EEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 77888888888887765 22 2 2 34455555444322111 111223445566777889999999999
Q ss_pred chhHHHHHHhcCCCCcEeeecC-ceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCC
Q 035798 198 AIGMACLLLAAGTKGKRFMMPH-AKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRP 276 (313)
Q Consensus 198 AaS~AalLLaAG~kGkR~alPn-S~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd 276 (313)
|.+.|+.|+++++- |++.++ ++|.+-....|.. .... ....+.++.|. ....+++-..
T Consensus 102 a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~Gl~----~~~~-------------~~~~l~~~~g~--~~a~~lll~g 160 (229)
T PRK06213 102 AIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIGMT----MPHA-------------AIELARDRLTP--SAFQRAVINA 160 (229)
T ss_pred eeHHHHHHHHhCCe--eeEecCCcEEECchhhhCCc----CChH-------------HHHHHHHHcCH--HHHHHHHHcC
Confidence 99999999999997 999999 8877644433321 0010 00111222222 2334456677
Q ss_pred ccccHHHHHHcCCceEEecCC
Q 035798 277 YHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 277 ~~lsA~EAleyGLID~Ii~~~ 297 (313)
..++|+||+++||||+|+...
T Consensus 161 ~~~~a~eA~~~Glv~~vv~~~ 181 (229)
T PRK06213 161 EMFDPEEAVAAGFLDEVVPPE 181 (229)
T ss_pred cccCHHHHHHCCCceeccChH
Confidence 789999999999999999643
No 41
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.14 E-value=5.1e-05 Score=70.82 Aligned_cols=152 Identities=18% Similarity=0.148 Sum_probs=98.5
Q ss_pred EEEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCC-CCCCCCCcccc------------chHHHHHHHH
Q 035798 122 IVYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGT-TRDDGESVGME------------SEGFAIYDTL 183 (313)
Q Consensus 122 IIfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGG-sv~~~e~vg~v------------~aGlAIYDtm 183 (313)
+|.|+-| ++.++.+.+.+.|..++.++. --.|.|.+.|+ .+..|--++.+ .....+++.|
T Consensus 19 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~--vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 96 (256)
T PRK06143 19 TLTIRNAGSLNILGTPVILALTQALRWLAADPD--VRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAV 96 (256)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCC--cEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHH
Confidence 3455544 788899999998888775322 22344455452 33333211111 1113356677
Q ss_pred HhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 035798 184 MQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 263 (313)
Q Consensus 184 ~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG 263 (313)
..++.||.+.+-|.|.+.|+-|.++++- |++.++++|.+-....|..+.+ .. ..+.+..|
T Consensus 97 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~p~~~-~~-----------------~~l~~~iG 156 (256)
T PRK06143 97 RHFPVPVIARIPGWCLGGGLELAAACDL--RIAAHDAQFGMPEVRVGIPSVI-HA-----------------ALLPRLIG 156 (256)
T ss_pred HhCCCCEEEEECCEEeehhHHHHHhCCE--EEecCCCEEeCCccccCCCCcc-HH-----------------HHHHHhcC
Confidence 7888999999999999999999999997 9999999887644433321100 00 12333344
Q ss_pred CCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 264 NSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 264 ~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
. .+..+++-....++|+||+++||||+|+...
T Consensus 157 ~--~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 188 (256)
T PRK06143 157 W--ARTRWLLLTGETIDAAQALAWGLVDRVVPLA 188 (256)
T ss_pred H--HHHHHHHHcCCcCCHHHHHHCCCcCeecCHH
Confidence 3 3445556666789999999999999999754
No 42
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.10 E-value=8.1e-05 Score=69.36 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=92.8
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCE-EEEEcCCCCCCCCCCCcccc------c---------hHHHHHHHHHhcCCeEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPI-YLYINSTGTTRDDGESVGME------S---------EGFAIYDTLMQMKCEVHT 192 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I-~LyINSPGGsv~~~e~vg~v------~---------aGlAIYDtm~~i~~~V~T 192 (313)
++.++.+.+...|..++.+ .++ .|.|.+.|+.+..|--+..+ . ....++..|..++.||.+
T Consensus 28 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 104 (262)
T PRK05995 28 FNETVIAELTAAFRALDAD---DSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIA 104 (262)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEE
Confidence 7788888888888777643 233 34455555444332211100 0 012345566677899999
Q ss_pred EEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Q 035798 193 VAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKT 272 (313)
Q Consensus 193 v~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~ 272 (313)
.+-|.|.+.|+-|+++++- |++.++++|.+-....|... +.- . ..+.+..| .....++
T Consensus 105 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p-----~~g--~-----------~~l~~~vg--~~~a~~l 162 (262)
T PRK05995 105 RVHGDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLGLIP-----ATI--S-----------PYVIRAMG--ERAARRY 162 (262)
T ss_pred EECCEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccccCc-----cch--H-----------HHHHHHhC--HHHHHHH
Confidence 9999999999999999997 99999999877555443321 100 0 01222333 3333455
Q ss_pred hcCCccccHHHHHHcCCceEEecCC
Q 035798 273 IRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 273 ~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+-...-++|+||+++||||+|+...
T Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (262)
T PRK05995 163 FLTAERFDAAEALRLGLVHEVVPAE 187 (262)
T ss_pred HHcCCccCHHHHHHcCCCCeecCHH
Confidence 5555678999999999999999643
No 43
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.09 E-value=5.5e-05 Score=70.15 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=96.2
Q ss_pred EEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcc-----------ccchHHHHHHHHHhc
Q 035798 123 VYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG-----------MESEGFAIYDTLMQM 186 (313)
Q Consensus 123 IfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg-----------~v~aGlAIYDtm~~i 186 (313)
|.|+-| ++.++.+.+...|..++.++..+ .|.|.+.|+.+..|--+. .......+++.|..+
T Consensus 18 i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (259)
T PRK06688 18 ITINRPDKKNALTAAMYQALADALEAAATDPAVR--VVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAAL 95 (259)
T ss_pred EEecCcccccCCCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcC
Confidence 455555 78889999999888777533222 233444443332221110 011234566777788
Q ss_pred CCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 035798 187 KCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNS 265 (313)
Q Consensus 187 ~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s 265 (313)
+.||...+-|.|.+.|.-|+++++- |++.++++|.+.....|.. +.+ ... .+.+..|.
T Consensus 96 ~kp~Iaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g-~~~-----------------~l~~~~G~- 154 (259)
T PRK06688 96 PKPVVAAVNGPAVGVGVSLALACDL--VYASESAKFSLPFAKLGLCPDAG-GSA-----------------LLPRLIGR- 154 (259)
T ss_pred CCCEEEEECCeeecHHHHHHHhCCE--EEecCCCEecCchhhcCCCCCcc-hhh-----------------HHHHHhhH-
Confidence 8999999999999999999999997 9999999998876654432 111 111 11112221
Q ss_pred HHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 266 EEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 266 ~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
....+++-....++|+||+++||||+|+...
T Consensus 155 -~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~ 185 (259)
T PRK06688 155 -ARAAEMLLLGEPLSAEEALRIGLVNRVVPAA 185 (259)
T ss_pred -HHHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence 2223333344569999999999999998753
No 44
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.09 E-value=7.2e-05 Score=69.69 Aligned_cols=151 Identities=16% Similarity=0.136 Sum_probs=97.3
Q ss_pred EEEEcCc----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc--ch-------HHHHHHHHHhcCC
Q 035798 122 IVYIGMP----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME--SE-------GFAIYDTLMQMKC 188 (313)
Q Consensus 122 IIfL~g~----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v--~a-------GlAIYDtm~~i~~ 188 (313)
+|.|+.| ++.++.+.+.+.|..++..+..+ .|.|-+.|+.+..|--++.+ .. ...++..|..++.
T Consensus 13 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr--~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~k 90 (251)
T TIGR03189 13 RLRLARPKANIVDAAMIAALSAALGEHLEDSALR--AVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPV 90 (251)
T ss_pred EEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCce--EEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCC
Confidence 3456665 78888888988888876533222 24444555443332222110 01 1234556777789
Q ss_pred eEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 035798 189 EVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEF 268 (313)
Q Consensus 189 ~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~ 268 (313)
||.+.+-|.|.+.|.-|.++++- |++.++++|.+-....|... ... ...+.+..|. ..
T Consensus 91 PvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p-----~~~-------------~~~l~~~vg~--~~ 148 (251)
T TIGR03189 91 PILVAVRGQCLGGGLEVAAAGNL--MFAAPDAKLGQPEIVLGVFA-----PAA-------------SCLLPERMGR--VA 148 (251)
T ss_pred CEEEEecCeeeeHHHHHHHhCCE--EEEcCCCEEeCchhhcCCCC-----Cch-------------HHHHHHHhCH--HH
Confidence 99999999999999999999997 99999998876444333211 100 0123334443 33
Q ss_pred HHHhhcCCccccHHHHHHcCCceEEecC
Q 035798 269 VTKTIRRPYHMDSRRAKEFGVIDKVLWR 296 (313)
Q Consensus 269 I~~~~~rd~~lsA~EAleyGLID~Ii~~ 296 (313)
..+++-...-++|+||+++||||+|++.
T Consensus 149 a~~l~ltg~~~~a~eA~~~Glv~~v~~~ 176 (251)
T TIGR03189 149 AEDLLYSGRSIDGAEGARIGLANAVAED 176 (251)
T ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCc
Confidence 4555555667999999999999999864
No 45
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.08 E-value=0.0001 Score=69.51 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=93.9
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCcccc----------------chHHHHHHHHHhcCCeEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGME----------------SEGFAIYDTLMQMKCEVH 191 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v----------------~aGlAIYDtm~~i~~~V~ 191 (313)
++.++...+.+.|..++.+ .++. |.|.+.|..+..|--+..+ .....++..|..++.||.
T Consensus 41 l~~~~~~eL~~~l~~~~~d---~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 117 (277)
T PRK08258 41 LTFESYAELRDLFRELVYA---DDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPII 117 (277)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 7788888888888777643 2333 4444444333222111110 001245667778889999
Q ss_pred EEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 035798 192 TVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVT 270 (313)
Q Consensus 192 Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~ 270 (313)
..+-|.|.+.|+-|.++++- |++.++++|.+.....|.. +.+-.. ..+.+..|. ....
T Consensus 118 AaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~~g~~-----------------~~l~~~vG~--~~a~ 176 (277)
T PRK08258 118 AAVDGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGLAGADMGAC-----------------ALLPRIIGQ--GRAS 176 (277)
T ss_pred EEECCeeehHHHHHHHhCCE--EEecCCCEEeccccccCcCCCCchHH-----------------HHHHHHhCH--HHHH
Confidence 99999999999999999997 9999999998877665543 100011 111222232 2234
Q ss_pred HhhcCCccccHHHHHHcCCceEEecCC
Q 035798 271 KTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 271 ~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+++-....++|+||+++||||+|+...
T Consensus 177 ~l~ltg~~~~a~eA~~~Glv~~vv~~~ 203 (277)
T PRK08258 177 ELLYTGRSMSAEEGERWGFFNRLVEPE 203 (277)
T ss_pred HHHHcCCCCCHHHHHHcCCCcEecCHH
Confidence 455556789999999999999999754
No 46
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.08 E-value=7e-05 Score=70.16 Aligned_cols=150 Identities=16% Similarity=0.146 Sum_probs=98.0
Q ss_pred EEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCE-EEEEcCCCCCCCCCCCccccc----------------------
Q 035798 123 VYIGMP-----LVPAVTELVVAELMYLQWMDPKAPI-YLYINSTGTTRDDGESVGMES---------------------- 174 (313)
Q Consensus 123 IfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I-~LyINSPGGsv~~~e~vg~v~---------------------- 174 (313)
|.|+-| ++.++.+.+...|..++.. .++ .|.|-+.|..+..|--+..+.
T Consensus 19 itlnrp~~~Nal~~~~~~~L~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (272)
T PRK06210 19 ITLNRPDRLNAWTPVMEAEVYAAMDRAEAD---PAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRP 95 (272)
T ss_pred EEeCCcccccCCCHHHHHHHHHHHHHhccC---CCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhh
Confidence 456655 7888899999988877643 233 244445454332221111000
Q ss_pred hHHHHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHH
Q 035798 175 EGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDT 253 (313)
Q Consensus 175 aGlAIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~ 253 (313)
.....++.|..++.||.+.+-|.|.+.|+-|+++++- |++.++++|.+.....|.. +.|- .-
T Consensus 96 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g~-~~-------------- 158 (272)
T PRK06210 96 DYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRGLIAEHGI-SW-------------- 158 (272)
T ss_pred hHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcCCCCCCch-hh--------------
Confidence 0122356777889999999999999999999999998 9999999999877665432 1111 10
Q ss_pred HHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 254 LVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 254 l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.+.+..| ..+..+++-....++|+||+++||||+|+...
T Consensus 159 ---~l~~~ig--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 197 (272)
T PRK06210 159 ---ILPRLVG--HANALDLLLSARTFYAEEALRLGLVNRVVPPD 197 (272)
T ss_pred ---hhHhhhC--HHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 1111122 34455556567788999999999999998753
No 47
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=98.06 E-value=0.0002 Score=66.26 Aligned_cols=158 Identities=13% Similarity=0.117 Sum_probs=106.1
Q ss_pred ccCCcE--EEEcCccCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCccccchHHHHHHHHHhcCCeEEEE
Q 035798 117 LLHGRI--VYIGMPLVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTV 193 (313)
Q Consensus 117 Ll~~RI--IfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~~V~Tv 193 (313)
.+..|. |.+.+++-+.-+......|..- ...--++ +.+|||||+ |..++++-..++..+.++..-
T Consensus 71 ~~dgr~l~VvVse~~a~~da~sal~~lir~---~G~y~~t~v~lnSpGGs---------v~kA~~mgkLiRe~gfdt~v~ 138 (245)
T COG3904 71 TLDGRQLPVVVSEPGANVDAASALGRLIRK---AGLYIATGVTLNSPGGS---------VAKACSMGKLIREDGFDTAVD 138 (245)
T ss_pred hccCceeeEEEcCCCCCccHHHHHHHHHhc---cCceeEEEEEecCCCCc---------HHHHHhhhhhhhhcccCcccc
Confidence 355554 4466776665555555555432 1222344 779999999 588999999999988888888
Q ss_pred EcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHh
Q 035798 194 AVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAM-VNRDTLVKLLAKHTGNSEEFVTKT 272 (313)
Q Consensus 194 ~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~-~~r~~l~~i~A~~TG~s~e~I~~~ 272 (313)
...+|+|++.++|++|.. |++-+.+.+.+||++....-. .... .+++-.. +.-.++ ..|-...|....-+.-.
T Consensus 139 s~A~CasaCpl~fagGvr--Rvve~~ayiGVHq~~~~g~~~-r~~~--~~a~Sanq~~tar~-a~ylrEMgigpgLlq~m 212 (245)
T COG3904 139 SGAMCASACPLMFAGGVR--RVVEDFAYIGVHQITTTGRRE-RIVN--GKAKSANQKVTARL-AAYLREMGIGPGLLQMM 212 (245)
T ss_pred chhhhhccchhhhhccee--eeecccceeeeeeccccCCcc-ccCc--HhhhhhhhhhHHHH-HHHHHHcCCCHHHHHHH
Confidence 889999999999999998 999999999999997432110 0011 1111111 111222 23556778876655443
Q ss_pred h----cCCccccHHHHHHcCCceE
Q 035798 273 I----RRPYHMDSRRAKEFGVIDK 292 (313)
Q Consensus 273 ~----~rd~~lsA~EAleyGLID~ 292 (313)
. +|=++++.+|-.+|.|+.+
T Consensus 213 l~tpp~dir~l~~kem~~~~L~t~ 236 (245)
T COG3904 213 LATPPSDIRQLGLKEMTAMKLVTS 236 (245)
T ss_pred hcCChHhhhhhhHHHHhhhccccc
Confidence 3 4668999999999988753
No 48
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.06 E-value=0.00011 Score=68.28 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=94.5
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc----------chHHHHHHHHHhcCCeEEEEEcccc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME----------SEGFAIYDTLMQMKCEVHTVAVGAA 198 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v----------~aGlAIYDtm~~i~~~V~Tv~~G~A 198 (313)
++.++.+.+.+.+..++.++..+ .|.|.+-|..+..|--+..+ .....++..|..++.||...+-|.|
T Consensus 26 l~~~~~~~L~~~~~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a 103 (255)
T PRK09674 26 LNNALLTQLVNELEAAATDTSIG--VCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYA 103 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcE--EEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 67888888888887776532222 23344444333222111100 0113456778888999999999999
Q ss_pred hhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCc
Q 035798 199 IGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPY 277 (313)
Q Consensus 199 aS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~ 277 (313)
.+.|+-|+++++- |++.++++|.+-....|.. +.+ .. ..+.+..| .....+++-...
T Consensus 104 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~~~ig--~~~a~~l~l~g~ 161 (255)
T PRK09674 104 LGAGCELALLCDI--VIAGENARFGLPEITLGIMPGAG-GT-----------------QRLIRSVG--KSLASQMVLTGE 161 (255)
T ss_pred ehHHHHHHHhCCE--EEecCCCEEeCchhhcCCCCCcc-HH-----------------HHHHHHhC--HHHHHHHHHcCC
Confidence 9999999999997 9999999987766554432 111 01 12233344 233345555667
Q ss_pred cccHHHHHHcCCceEEecCC
Q 035798 278 HMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 278 ~lsA~EAleyGLID~Ii~~~ 297 (313)
.|+|+||+++||||+|+...
T Consensus 162 ~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK09674 162 SITAQQAQQAGLVSEVFPPE 181 (255)
T ss_pred ccCHHHHHHcCCCcEecChH
Confidence 79999999999999999754
No 49
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.02 E-value=0.00012 Score=68.72 Aligned_cols=144 Identities=14% Similarity=0.173 Sum_probs=92.5
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCcccc---------c----hHHHHHHHHHhcCCeEEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGME---------S----EGFAIYDTLMQMKCEVHTVA 194 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v---------~----aGlAIYDtm~~i~~~V~Tv~ 194 (313)
++.++.+.+.+.|..++.. .+|. |.|.+.|..+..|--+..+ . ....++..|..++.||...+
T Consensus 35 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (266)
T PRK08139 35 LSEAMLAALQAALDAIAAD---PSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARV 111 (266)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 6788888888888776642 2343 3344544333222111100 0 01234556778889999999
Q ss_pred cccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhc
Q 035798 195 VGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIR 274 (313)
Q Consensus 195 ~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~ 274 (313)
-|.|.+.|.-|+++++- |++.++++|.+-....|....+... .+.+..| .....+++-
T Consensus 112 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~~~------------------~l~r~vG--~~~A~~l~l 169 (266)
T PRK08139 112 HGIATAAGCQLVASCDL--AVAADTARFAVPGVNIGLFCSTPMV------------------ALSRNVP--RKQAMEMLL 169 (266)
T ss_pred CceeeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCCCCCccHH------------------HHHHHhC--HHHHHHHHH
Confidence 99999999999999997 9999999887655554433210000 1222333 233445555
Q ss_pred CCccccHHHHHHcCCceEEecCC
Q 035798 275 RPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 275 rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
....++|+||+++||||+|+...
T Consensus 170 tg~~~~a~eA~~~GLv~~vv~~~ 192 (266)
T PRK08139 170 TGEFIDAATAREWGLVNRVVPAD 192 (266)
T ss_pred cCCccCHHHHHHcCCccEeeChh
Confidence 66788999999999999999754
No 50
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.01 E-value=0.00012 Score=68.14 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=97.2
Q ss_pred EEEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccc-------hH------------H
Q 035798 122 IVYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMES-------EG------------F 177 (313)
Q Consensus 122 IIfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~-------aG------------l 177 (313)
+|.|+-| ++.++.+.+...|..++.++.. -.|.|.+.|+.+..|--+..+. .. .
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v--r~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T PRK07509 15 DVRLNRPDKMNALDFAMFEELIATIKRLKKDRGI--RAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQ 92 (262)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhhCCCC--eEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHH
Confidence 3556544 7888889999988877753222 2344455555443321111000 00 1
Q ss_pred HHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Q 035798 178 AIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVK 256 (313)
Q Consensus 178 AIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~ 256 (313)
.++..|+.++.||.+.+-|.|.+.|+-|.++++- |++.++++|.+.....|.. +.+ .. .
T Consensus 93 ~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g-~~-----------------~ 152 (262)
T PRK07509 93 RVSLGWRRLPVPVIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWGLVPDMA-GT-----------------V 152 (262)
T ss_pred HHHHHHHhCCCCEEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhccCCCCCch-HH-----------------H
Confidence 1344567788999999999999999999999998 9999999998876654432 111 11 1
Q ss_pred HHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecC
Q 035798 257 LLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWR 296 (313)
Q Consensus 257 i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~ 296 (313)
.+.+..| .....+++-....++|+||+++||||+|++.
T Consensus 153 ~l~~~~g--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 190 (262)
T PRK07509 153 SLRGLVR--KDVARELTYTARVFSAEEALELGLVTHVSDD 190 (262)
T ss_pred HHHHHhC--HHHHHHHHHcCCCcCHHHHHHcCChhhhhch
Confidence 1222223 2334555556678999999999999999853
No 51
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.01 E-value=0.00025 Score=66.50 Aligned_cols=145 Identities=15% Similarity=0.028 Sum_probs=93.2
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc----------chHHHHHHHHHhcCCeEEEEEcccc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME----------SEGFAIYDTLMQMKCEVHTVAVGAA 198 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v----------~aGlAIYDtm~~i~~~V~Tv~~G~A 198 (313)
++.++.+.+...|..++.++..+ .|.|.+.|..+..|--+..+ .....++..|..++.||...+-|.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a 105 (258)
T PRK06190 28 LSAALRRALFAALAEADADDDVD--VVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAA 105 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 78888888888888776532222 23334434333222111100 1123466778888999999999999
Q ss_pred hhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCc
Q 035798 199 IGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPY 277 (313)
Q Consensus 199 aS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~ 277 (313)
.+.|.-|+++++- |++.++++|.+-....|.. +.+ . ...+.+..| .....+++-...
T Consensus 106 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g-~-----------------~~~l~r~vG--~~~a~~l~ltg~ 163 (258)
T PRK06190 106 VTGGLELALACDI--LIASERARFADTHARVGILPGWG-L-----------------SVRLPQKVG--IGRARRMSLTGD 163 (258)
T ss_pred ecHHHHHHHhCCE--EEEeCCCEEECcccccCcCCCcc-H-----------------HHHHHHHhC--HHHHHHHHHhCC
Confidence 9999999999997 9999999987544333321 100 0 012223334 334445665667
Q ss_pred cccHHHHHHcCCceEEecCC
Q 035798 278 HMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 278 ~lsA~EAleyGLID~Ii~~~ 297 (313)
.++|+||+++||||+|+...
T Consensus 164 ~~~a~eA~~~GLv~~vv~~~ 183 (258)
T PRK06190 164 FLDAADALRAGLVTEVVPHD 183 (258)
T ss_pred ccCHHHHHHcCCCeEecCHh
Confidence 89999999999999999754
No 52
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.00 E-value=0.00018 Score=66.74 Aligned_cols=144 Identities=16% Similarity=0.071 Sum_probs=92.5
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCccc-----------cchHHHHHHHHHhcCCeEEEEEcc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGM-----------ESEGFAIYDTLMQMKCEVHTVAVG 196 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~-----------v~aGlAIYDtm~~i~~~V~Tv~~G 196 (313)
++.++.+.+...|..++.+ +++. |.|.+.|+.+..|--+.. ......++..|..++.||...+-|
T Consensus 30 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 106 (251)
T PRK06023 30 ITRAMYATMAKALKAADAD---DAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDG 106 (251)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 7889999999988877653 2333 333444433322211110 011224566777888999999999
Q ss_pred cchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcC
Q 035798 197 AAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRR 275 (313)
Q Consensus 197 ~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~r 275 (313)
.|.+.|+-|.++++- |++.++++|.+.....|.. +.+ .. ..+.+..| ..+..+++-.
T Consensus 107 ~a~GgG~~la~acD~--ria~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~~~~g--~~~a~~l~l~ 164 (251)
T PRK06023 107 LAIGIGTTIHLHCDL--TFASPRSLFRTPFVDLALVPEAG-SS-----------------LLAPRLMG--HQRAFALLAL 164 (251)
T ss_pred ceecHHHHHHHhCCE--EEEeCCCEecCcccccCCCCCch-HH-----------------HHHHHHHh--HHHHHHHHHh
Confidence 999999999999997 9999999998765544432 111 11 01111222 2233334444
Q ss_pred CccccHHHHHHcCCceEEecCC
Q 035798 276 PYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 276 d~~lsA~EAleyGLID~Ii~~~ 297 (313)
...++++||+++||||+|+...
T Consensus 165 g~~~~a~eA~~~Glv~~vv~~~ 186 (251)
T PRK06023 165 GEGFSAEAAQEAGLIWKIVDEE 186 (251)
T ss_pred CCCCCHHHHHHcCCcceeeCHH
Confidence 5679999999999999999754
No 53
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.00 E-value=0.00016 Score=67.23 Aligned_cols=145 Identities=13% Similarity=0.065 Sum_probs=94.4
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc---chH------HHHHHHHHhcCCeEEEEEcccch
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME---SEG------FAIYDTLMQMKCEVHTVAVGAAI 199 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v---~aG------lAIYDtm~~i~~~V~Tv~~G~Aa 199 (313)
++.++.+.+.+.|..++..+..+ .|.|-+.|..+..|--+..+ ..+ ..++..|..++.||.+.+-|.|.
T Consensus 29 l~~~~~~~L~~~l~~~~~d~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 106 (249)
T PRK07110 29 FSDELCDQLHEAFDTIAQDPRYK--VVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAI 106 (249)
T ss_pred CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCcee
Confidence 67788888888887776432222 34444555444322211100 001 25667788888999999999999
Q ss_pred hHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCcc
Q 035798 200 GMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYH 278 (313)
Q Consensus 200 S~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~ 278 (313)
+.|..|.++++- |++.++++|.+.....|.. +.+ .. ..+.+..| .....+++-...-
T Consensus 107 GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~~~~g--~~~a~~llltg~~ 164 (249)
T PRK07110 107 GGGLVLGLYADI--VVLSRESVYTANFMKYGFTPGMG-AT-----------------AILPEKLG--LALGQEMLLTARY 164 (249)
T ss_pred chHHHHHHhCCE--EEEeCCCEecCchhccCCCCCch-HH-----------------HHHHHHhC--HHHHHHHHHcCCc
Confidence 999999999997 9999999886654443322 100 11 11222333 3345566667788
Q ss_pred ccHHHHHHcCCceEEecCC
Q 035798 279 MDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 279 lsA~EAleyGLID~Ii~~~ 297 (313)
++++||+++||||+|+++.
T Consensus 165 ~~a~eA~~~Glv~~vv~~~ 183 (249)
T PRK07110 165 YRGAELKKRGVPFPVLPRA 183 (249)
T ss_pred cCHHHHHHcCCCeEEeChH
Confidence 9999999999999999754
No 54
>PLN02921 naphthoate synthase
Probab=97.99 E-value=0.00026 Score=68.94 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=96.6
Q ss_pred EEEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEEEE-cC-------CCCCCCCC---CCccc-cc---hHHHHHH
Q 035798 122 IVYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYLYI-NS-------TGTTRDDG---ESVGM-ES---EGFAIYD 181 (313)
Q Consensus 122 IIfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~LyI-NS-------PGGsv~~~---e~vg~-v~---aGlAIYD 181 (313)
+|.|+-| ++.++...+...|..++.+ ..|.+.| .+ .||++..- +.-+. .. ....++.
T Consensus 79 ~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d---~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~ 155 (327)
T PLN02921 79 KITINRPERRNAFRPRTVKELQRAFNDARDD---SSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQI 155 (327)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhhC---CCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHH
Confidence 3456554 7888889999888777653 3343333 33 33443100 00000 00 0122456
Q ss_pred HHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035798 182 TLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKH 261 (313)
Q Consensus 182 tm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~ 261 (313)
.|..++.||...+-|.|.+.|..|.++++- |++.++++|.+..+..|....+-..- .+.+.
T Consensus 156 ~l~~~~kPvIAaVnG~a~GGG~~LalacD~--riA~~~A~f~~pe~~~Gl~p~~gg~~-----------------~L~rl 216 (327)
T PLN02921 156 QIRRLPKPVIAMVAGYAVGGGHILHMVCDL--TIAADNAVFGQTGPKVGSFDAGYGSS-----------------IMARL 216 (327)
T ss_pred HHHhCCCCEEEEECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCCCccHHH-----------------HHHHH
Confidence 677788999999999999999999999998 99999999988777655321000110 11222
Q ss_pred hCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 262 TGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 262 TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.| ..+..+++-....|+|+||+++||||+|+...
T Consensus 217 iG--~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~ 250 (327)
T PLN02921 217 VG--QKKAREMWFLARFYTASEALKMGLVNTVVPLD 250 (327)
T ss_pred hC--HHHHHHHHHcCCcCCHHHHHHCCCceEEeCHH
Confidence 23 23344555566789999999999999999754
No 55
>PLN02888 enoyl-CoA hydratase
Probab=97.99 E-value=0.00023 Score=66.84 Aligned_cols=145 Identities=12% Similarity=0.076 Sum_probs=91.3
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc---------chHHHHHHHHHhcCCeEEEEEcccch
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME---------SEGFAIYDTLMQMKCEVHTVAVGAAI 199 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v---------~aGlAIYDtm~~i~~~V~Tv~~G~Aa 199 (313)
++.++...+...|..++.++..+ .|.|.+.|..+..|--+... .....++..|..++.||.+.+-|.|.
T Consensus 34 l~~~~~~~l~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~ 111 (265)
T PLN02888 34 LTRPMMVELAAAFKRLDEDDSVK--VIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAI 111 (265)
T ss_pred CCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 77888888888888776532222 34445555333222211100 01123455677788999999999999
Q ss_pred hHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCcc
Q 035798 200 GMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYH 278 (313)
Q Consensus 200 S~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~ 278 (313)
+.|..|+++++- |++.++++|.+=....|.. +.+. ...+.+..|. ....+++-....
T Consensus 112 GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~------------------~~~l~~~vG~--~~a~~l~ltg~~ 169 (265)
T PLN02888 112 TAGFEIALACDI--LVASRGAKFIDTHAKFGIFPSWGL------------------SQKLSRIIGA--NRAREVSLTAMP 169 (265)
T ss_pred chHHHHHHhCCE--EEecCCCEecCccccccCCCCccH------------------hhHHHHHhCH--HHHHHHHHhCCc
Confidence 999999999997 9999999887644333321 1100 0112223332 223344445568
Q ss_pred ccHHHHHHcCCceEEecCC
Q 035798 279 MDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 279 lsA~EAleyGLID~Ii~~~ 297 (313)
++|+||+++||||+|+...
T Consensus 170 ~~a~eA~~~Glv~~vv~~~ 188 (265)
T PLN02888 170 LTAETAERWGLVNHVVEES 188 (265)
T ss_pred cCHHHHHHcCCccEeeChH
Confidence 8999999999999999754
No 56
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=97.97 E-value=0.00022 Score=66.46 Aligned_cols=144 Identities=19% Similarity=0.144 Sum_probs=92.6
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCE-EEEEcCCCC-CCCCCCCcccc------------chHHHHHHHHHhcCCeEEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPI-YLYINSTGT-TRDDGESVGME------------SEGFAIYDTLMQMKCEVHTVA 194 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I-~LyINSPGG-sv~~~e~vg~v------------~aGlAIYDtm~~i~~~V~Tv~ 194 (313)
++.++...+.+.+..++.+ .++ .|.|.+.|+ .+..|--++.+ .....++..|..++.||...+
T Consensus 28 l~~~~~~~l~~al~~~~~d---~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 104 (260)
T PRK07657 28 LSLALLEELQNILTQINEE---ANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAI 104 (260)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 7888888888888877653 233 344455554 33332211110 001235566777789999999
Q ss_pred cccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Q 035798 195 VGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTI 273 (313)
Q Consensus 195 ~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~ 273 (313)
-|.|.+.|+-|.++++- |++.++++|.+-....|.. +.+ ... .+.+..| .....+++
T Consensus 105 ~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~p~~g-~~~-----------------~l~~~vG--~~~a~~l~ 162 (260)
T PRK07657 105 NGIALGGGLELALACDF--RIAAESASLGLTETTLAIIPGAG-GTQ-----------------RLPRLIG--VGRAKELI 162 (260)
T ss_pred cCEeechHHHHHHhCCE--EEeeCCCEEcCchhccCcCCCcc-HHH-----------------HHHHHhC--HHHHHHHH
Confidence 99999999999999997 9999999887765554432 111 111 1111222 22334444
Q ss_pred cCCccccHHHHHHcCCceEEecCC
Q 035798 274 RRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 274 ~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
-....++++||+++||||+|+...
T Consensus 163 l~g~~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK07657 163 YTGRRISAQEAKEIGLVEFVVPAH 186 (260)
T ss_pred HhCCCCCHHHHHHcCCCCeecCHH
Confidence 455679999999999999999754
No 57
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=97.97 E-value=0.00012 Score=68.44 Aligned_cols=144 Identities=14% Similarity=0.158 Sum_probs=92.7
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCE-EEEEcCCCCCCCCCCCccccc-------h--------HHHHHHHHHhcCCeEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPI-YLYINSTGTTRDDGESVGMES-------E--------GFAIYDTLMQMKCEVHT 192 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I-~LyINSPGGsv~~~e~vg~v~-------a--------GlAIYDtm~~i~~~V~T 192 (313)
++.++...+...|..++.+ .++ .|.|.+.|..+..|--+..+. . ...+++.|+.++.||..
T Consensus 29 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 105 (262)
T PRK07468 29 LSARMIAELTTAARRLAAD---AAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIG 105 (262)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 6778888888877766542 233 344455554433321111000 0 02256778888999999
Q ss_pred EEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Q 035798 193 VAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKT 272 (313)
Q Consensus 193 v~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~ 272 (313)
.+-|.|.+.|.-|+++++- |++.++++|.+-....|... +.- . ..+..+.| .....++
T Consensus 106 av~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~p-----~~g--~-----------~~~~~~vG--~~~a~~l 163 (262)
T PRK07468 106 RIQGQAFGGGVGLISVCDV--AIAVSGARFGLTETRLGLIP-----ATI--S-----------PYVVARMG--EANARRV 163 (262)
T ss_pred EECCEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccCCCc-----ccc--h-----------hhHHhhcc--HHHHHHH
Confidence 9999999999999999998 99999998766544433221 100 0 00112233 2344556
Q ss_pred hcCCccccHHHHHHcCCceEEecCC
Q 035798 273 IRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 273 ~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+-...-++|+||+++||||+|+...
T Consensus 164 ll~g~~~~a~eA~~~Glv~~v~~~~ 188 (262)
T PRK07468 164 FMSARLFDAEEAVRLGLLSRVVPAE 188 (262)
T ss_pred HHhCCccCHHHHHHcCCcceecCHH
Confidence 6667889999999999999999754
No 58
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=97.97 E-value=9.9e-05 Score=68.64 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=94.8
Q ss_pred EEEEcCc----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc------c-------hHHHHHHHHH
Q 035798 122 IVYIGMP----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME------S-------EGFAIYDTLM 184 (313)
Q Consensus 122 IIfL~g~----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v------~-------aGlAIYDtm~ 184 (313)
+|.|+-| ++.++.+.+...|..++.++.. =.|.|.+.|..+..|--+..+ . ....+++.|.
T Consensus 14 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~v--r~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (249)
T PRK07938 14 EVTVDYPPVNALPSAGWFALADAITAAGADPDT--RVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVY 91 (249)
T ss_pred EEEECCCCcccCCHHHHHHHHHHHHHhhcCCCe--EEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHH
Confidence 4455555 7778888888888777643222 233344444332222111100 0 0123455677
Q ss_pred hcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 035798 185 QMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGN 264 (313)
Q Consensus 185 ~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~ 264 (313)
.++.||...+-|.|.+.|.-|+++++- |++.++++|.+=....|..| . . ..+.+..|
T Consensus 92 ~~~kPvIAav~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~~g--~-~-----------------~~l~~~vg- 148 (249)
T PRK07938 92 ECAVPVIAAVHGFCLGGGIGLVGNADV--IVASDDATFGLPEVDRGALG--A-A-----------------THLQRLVP- 148 (249)
T ss_pred hCCCCEEEEEcCEEeehHHHHHHhCCE--EEEeCCCEeeCccceecCch--h-H-----------------HHHHHhcC-
Confidence 788999999999999999999999998 99999998866443333322 0 0 01222233
Q ss_pred CHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 265 SEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 265 s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.....+++-....++|+||+++||||+|+...
T Consensus 149 -~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 180 (249)
T PRK07938 149 -QHLMRALFFTAATITAAELHHFGSVEEVVPRD 180 (249)
T ss_pred -HHHHHHHHHhCCcCCHHHHHHCCCccEEeCHH
Confidence 23345555566789999999999999999744
No 59
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=97.97 E-value=0.00013 Score=68.67 Aligned_cols=151 Identities=16% Similarity=0.128 Sum_probs=94.5
Q ss_pred EEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccc-----------------------
Q 035798 123 VYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMES----------------------- 174 (313)
Q Consensus 123 IfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~----------------------- 174 (313)
|.|+-| ++.++.+.+...|..++.++..+ .|.|.+.|..+..|--+..+.
T Consensus 21 itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr--vvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (275)
T PLN02664 21 LNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVS--VIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIK 98 (275)
T ss_pred EEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcE--EEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHH
Confidence 455544 78888888888887776533222 233344443222221111000
Q ss_pred hHHHHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 035798 175 EGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTL 254 (313)
Q Consensus 175 aGlAIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l 254 (313)
....+++.|..++.||...+-|.|.+.|+.|.++++- |++.++++|.+-....|... +.. -.
T Consensus 99 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p-----~~g----~~------- 160 (275)
T PLN02664 99 FLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLAITA-----DLG----TL------- 160 (275)
T ss_pred HHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhCCCC-----Ccc----HH-------
Confidence 0123556777888999999999999999999999998 99999999877554433221 100 00
Q ss_pred HHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecC
Q 035798 255 VKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWR 296 (313)
Q Consensus 255 ~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~ 296 (313)
..+.+..|. ....+++-....++|+||+++||||+|+..
T Consensus 161 -~~l~~~vG~--~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 161 -QRLPSIVGY--GNAMELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred -HHHHHHhCH--HHHHHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 112222332 233445555678999999999999999974
No 60
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=97.96 E-value=0.00028 Score=65.87 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=93.1
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCcccc-----------ch-------HHHHHHHHHhcCCe
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGME-----------SE-------GFAIYDTLMQMKCE 189 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v-----------~a-------GlAIYDtm~~i~~~ 189 (313)
++.++...+...|..++.++ .++. |.|.+-|+.+..|--+..+ .. ...++..|..++.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~--~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 105 (266)
T PRK05981 28 VSIDMLGGLAEALDAIEDGK--AEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCP 105 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCC--CceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 78888888988888776422 2233 3344444433222111100 00 12356677788899
Q ss_pred EEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 035798 190 VHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFV 269 (313)
Q Consensus 190 V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I 269 (313)
|.+.+-|.|.+.|.-|.++++- |++.++++|.+..+..|..-.+-..- .+.+..| ....
T Consensus 106 vIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG~~p~~g~~~-----------------~l~~~vg--~~~a 164 (266)
T PRK05981 106 IVTAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIGLVPDGGSTW-----------------LLPRLVG--KARA 164 (266)
T ss_pred EEEEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcCCCCCccHHH-----------------HHHHHhH--HHHH
Confidence 9999999999999999999997 99999999987766544321000111 1111222 1223
Q ss_pred HHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 270 TKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 270 ~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.+++-....|+++||+++||||+|+...
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK05981 165 MELSLLGEKLPAETALQWGLVNRVVDDA 192 (266)
T ss_pred HHHHHhCCCcCHHHHHHcCCceEeeCHh
Confidence 4444455679999999999999999754
No 61
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=97.96 E-value=0.00016 Score=67.27 Aligned_cols=145 Identities=16% Similarity=0.078 Sum_probs=92.5
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccc----------------hHHHHHHHHHhcCCeEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMES----------------EGFAIYDTLMQMKCEVHT 192 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~----------------aGlAIYDtm~~i~~~V~T 192 (313)
++.++...+.+.|..++..+..+ .|.|.+.|+.+..|--+..+. ....++..|..++.||..
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 26 FNIPMCQEILEALRLAEEDPSVR--FLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 67788888888887776432222 344455554433222111000 112355667778899999
Q ss_pred EEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 035798 193 VAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTK 271 (313)
Q Consensus 193 v~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~ 271 (313)
.+-|.|.+.|+-|+++++- |++.++++|.+=....|.. +.+. . ..+.+..|. ....+
T Consensus 104 av~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~p~~g~-~-----------------~~l~~~vg~--~~a~~ 161 (255)
T PRK07260 104 CVDGAVAGAAANMAVAADF--CIASTKTKFIQAFVGVGLAPDAGG-L-----------------FLLTRAIGL--NRATH 161 (255)
T ss_pred EecCeeehhhHHHHHhCCE--EEEeCCCEEechHhhcCCCCCCch-h-----------------hhhHHhhCH--HHHHH
Confidence 9999999999999999998 9999999887533222221 1000 0 012222332 33455
Q ss_pred hhcCCccccHHHHHHcCCceEEecCC
Q 035798 272 TIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 272 ~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
++-....++|+||+++||||+|++..
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~ 187 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESE 187 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHh
Confidence 66667899999999999999998754
No 62
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=97.96 E-value=0.0002 Score=66.68 Aligned_cols=145 Identities=18% Similarity=0.149 Sum_probs=92.1
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCE-EEEEcCCC-CCCCCCCCcccc------------chHHHHHHHHHhcCCeEEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPI-YLYINSTG-TTRDDGESVGME------------SEGFAIYDTLMQMKCEVHTVA 194 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I-~LyINSPG-Gsv~~~e~vg~v------------~aGlAIYDtm~~i~~~V~Tv~ 194 (313)
++.++...+.+.+..++..+ ++ .|.|.+.| +.+..|--+..+ .....++..|..++.||...+
T Consensus 28 l~~~~~~~l~~~~~~~~~d~---~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 104 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDD---NVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAI 104 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCC---CcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 67788888888777666432 33 34455555 333222111100 011245667778889999999
Q ss_pred cccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhc
Q 035798 195 VGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIR 274 (313)
Q Consensus 195 ~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~ 274 (313)
-|.|.+.|.-|+++++- |++.++++|.+-....|... +..- ...+.+..|. ....+++-
T Consensus 105 ~G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~Gl~p-----~~g~------------~~~l~~~vG~--~~a~~l~l 163 (260)
T PRK05809 105 NGFALGGGCELSMACDI--RIASEKAKFGQPEVGLGITP-----GFGG------------TQRLARIVGP--GKAKELIY 163 (260)
T ss_pred cCeeecHHHHHHHhCCE--EEeeCCCEEeCcccccCCCC-----CccH------------HHHHHHHhCH--HHHHHHHH
Confidence 99999999999999997 99999999877555443321 1000 0122333332 23344444
Q ss_pred CCccccHHHHHHcCCceEEecCC
Q 035798 275 RPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 275 rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
....++++||+++||||+|+...
T Consensus 164 ~g~~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK05809 164 TGDMINAEEALRIGLVNKVVEPE 186 (260)
T ss_pred hCCCCCHHHHHHcCCCCcccChH
Confidence 55678999999999999998753
No 63
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=97.96 E-value=0.00018 Score=67.12 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=94.0
Q ss_pred EEEEcCc----cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCC-CCCCCCCccc-----------cchHHHHHHHHH
Q 035798 122 IVYIGMP----LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGT-TRDDGESVGM-----------ESEGFAIYDTLM 184 (313)
Q Consensus 122 IIfL~g~----Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGG-sv~~~e~vg~-----------v~aGlAIYDtm~ 184 (313)
+|.|+-| ++.++.+.+...|-.++.+ .+|. |.+.+.|+ .+..|--+.. ......++..|.
T Consensus 15 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (261)
T PRK03580 15 EITLDRPKANAIDAKTSFAMGEVFLNFRDD---PELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIF 91 (261)
T ss_pred EEEECCccccCCCHHHHHHHHHHHHHHHhC---CCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHH
Confidence 3455555 6778888888888777643 3343 33444443 2221111100 001234566777
Q ss_pred hcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 035798 185 QMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 263 (313)
Q Consensus 185 ~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG 263 (313)
.++.||.+.+-|.|.+.|.-|+++++- |++.++++|.+-....|.. +.+ .. ..+.+..|
T Consensus 92 ~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~p~~g-~~-----------------~~l~~~vg 151 (261)
T PRK03580 92 DLDKPVIAAVNGYAFGGGFELALAADF--IVCADNASFALPEAKLGIVPDSG-GV-----------------LRLPKRLP 151 (261)
T ss_pred hCCCCEEEEECCeeehHHHHHHHHCCE--EEecCCCEEeCcccccCcCCCcc-HH-----------------HHHHHHhC
Confidence 888999999999999999999999997 9999999886543333321 100 01 01111223
Q ss_pred CCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 264 NSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 264 ~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.....+++-....++|+||+++||||+|+...
T Consensus 152 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 183 (261)
T PRK03580 152 --PAIANEMVMTGRRMDAEEALRWGIVNRVVPQA 183 (261)
T ss_pred --HHHHHHHHHhCCccCHHHHHHcCCCcEecCHh
Confidence 23344454456789999999999999999754
No 64
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=97.95 E-value=0.00042 Score=64.64 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=89.9
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc------------chHHHHHHHHHhcCCeEEEEEcc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME------------SEGFAIYDTLMQMKCEVHTVAVG 196 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v------------~aGlAIYDtm~~i~~~V~Tv~~G 196 (313)
++.++...+...|..++ +..+ .|.|-+.|..+..|--+... .....++..|..++.||.+.+-|
T Consensus 26 l~~~~~~~l~~al~~~~--~~vr--~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 101 (255)
T PRK08150 26 LNDGLIAALRAAFARLP--EGVR--AVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHG 101 (255)
T ss_pred CCHHHHHHHHHHHHHhh--cCCe--EEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 67788888888887765 2222 23334444332222111100 11233566777888999999999
Q ss_pred cchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcC
Q 035798 197 AAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRR 275 (313)
Q Consensus 197 ~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~r 275 (313)
.|.+.|.-|.++++- |++.++++|.+-....|.. +.+ .. ..+.+..|. ....+++-.
T Consensus 102 ~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~~~iG~--~~a~~l~lt 159 (255)
T PRK08150 102 AVVGGGLELASAAHI--RVADESTYFALPEGQRGIFVGGG-GS-----------------VRVPRLIGV--ARMTDMMLT 159 (255)
T ss_pred EEEcHHHHHHHhCCE--EEEeCCCEEeccccccCCCCCcc-HH-----------------HHHHHHhCH--HHHHHHHHc
Confidence 999999999999997 9999999887644443321 111 01 012222332 233444545
Q ss_pred CccccHHHHHHcCCceEEecCC
Q 035798 276 PYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 276 d~~lsA~EAleyGLID~Ii~~~ 297 (313)
...|+|+||+++||||+|+...
T Consensus 160 g~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK08150 160 GRVYDAQEGERLGLAQYLVPAG 181 (255)
T ss_pred CCcCCHHHHHHcCCccEeeCch
Confidence 6679999999999999999864
No 65
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=97.95 E-value=0.00031 Score=65.34 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=91.3
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCcccc----------chHHHHHHHHHhcCCeEEEEEccc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGME----------SEGFAIYDTLMQMKCEVHTVAVGA 197 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v----------~aGlAIYDtm~~i~~~V~Tv~~G~ 197 (313)
++.++.+.+...|..++.++ ++. |.|-+.|+.+..|--++.+ ......+..|..++.||.+.+-|.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~ 104 (257)
T PRK05862 28 LNDALMDELGAALAAFDADE---GIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGY 104 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence 67788888888887776432 332 3334444333222211110 011234567778889999999999
Q ss_pred chhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCC
Q 035798 198 AIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRP 276 (313)
Q Consensus 198 AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd 276 (313)
|.+.|+-|.++++- |++.++++|.+=....|.. +.+ .. ..+.+..|. ..-.+++-..
T Consensus 105 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~~~vG~--~~a~~l~l~g 162 (257)
T PRK05862 105 ALGGGCELAMMCDI--IIAADTAKFGQPEIKLGVLPGMG-GS-----------------QRLTRAVGK--AKAMDLCLTG 162 (257)
T ss_pred EeHHHHHHHHHCCE--EEEeCCCEEeCchhccCcCCCcc-HH-----------------HHHHHHhCH--HHHHHHHHhC
Confidence 99999999999997 9999999887644443321 111 11 122333332 2234445555
Q ss_pred ccccHHHHHHcCCceEEecCC
Q 035798 277 YHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 277 ~~lsA~EAleyGLID~Ii~~~ 297 (313)
..++|+||+++||||+|+...
T Consensus 163 ~~~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK05862 163 RMMDAAEAERAGLVSRVVPAD 183 (257)
T ss_pred CccCHHHHHHcCCCCEeeCHh
Confidence 689999999999999999754
No 66
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.95 E-value=6.2e-05 Score=71.24 Aligned_cols=140 Identities=20% Similarity=0.247 Sum_probs=94.4
Q ss_pred CCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccc--h--HHHHHHHHH---hcCCeEE
Q 035798 119 HGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMES--E--GFAIYDTLM---QMKCEVH 191 (313)
Q Consensus 119 ~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~--a--GlAIYDtm~---~i~~~V~ 191 (313)
++++...+|-++++-...... +..+-.+. .-||.-++||||... |... . +-+|...+. ..+.|+.
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R-~~~lA~~~-~lPvV~lvDtpGa~~------g~~aE~~G~~~~ia~~~~~~s~~~VP~I 140 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALR-LMKQAEKF-GRPVVTFINTAGAYP------GVGAEERGQGEAIARNLMEMSDLKVPII 140 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEECCCcCC------CHhHHhccHHHHHHHHHHHHhCCCCCEE
Confidence 455555678888887666655 44443333 579999999999874 2211 1 234555444 4468999
Q ss_pred EEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 035798 192 TVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTK 271 (313)
Q Consensus 192 Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~ 271 (313)
++++|.|.|.|++.++.++. .+|.|++.+.+=.|.+. ..| .++. ....++..+
T Consensus 141 sVI~G~~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~-------a~i--l~~~----------------~~~a~~aa~ 193 (256)
T PRK12319 141 AIIIGEGGSGGALALAVADQ--VWMLENTMYAVLSPEGF-------ASI--LWKD----------------GSRATEAAE 193 (256)
T ss_pred EEEeCCcCcHHHHHhhcCCE--EEEecCceEEEcCHHHH-------HHH--HhcC----------------cccHHHHHH
Confidence 99999999999999998887 99999999988877531 111 1110 012222333
Q ss_pred hhcCCccccHHHHHHcCCceEEecCC
Q 035798 272 TIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 272 ~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.+ -+||.++.+.|+||+|+...
T Consensus 194 ~~----~~~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 194 LM----KITAGELLEMGVVDKVIPEH 215 (256)
T ss_pred Hc----CCCHHHHHHCCCCcEecCCC
Confidence 33 45999999999999999854
No 67
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=97.94 E-value=0.00027 Score=66.03 Aligned_cols=144 Identities=13% Similarity=0.082 Sum_probs=91.6
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCcccc----------chHHHHHHHHHhcCCeEEEEEccc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGME----------SEGFAIYDTLMQMKCEVHTVAVGA 197 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v----------~aGlAIYDtm~~i~~~V~Tv~~G~ 197 (313)
++.++.+.+...|..++.+ +++. |.|-+.|+.+..|--+..+ .....+++.|..++.||...+-|.
T Consensus 32 l~~~~~~~l~~al~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~ 108 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSED---PDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGY 108 (261)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence 7788888888888777643 2333 3334444333322211110 011235566777889999999999
Q ss_pred chhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCC
Q 035798 198 AIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRP 276 (313)
Q Consensus 198 AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd 276 (313)
|.+.|.-|.++++- |++.++++|.+=....|.. +.+. . ..+.+..|. ....+++-..
T Consensus 109 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~-~-----------------~~l~~~vG~--~~a~~l~l~g 166 (261)
T PRK08138 109 ALGGGCELAMHADI--IVAGESASFGQPEIKVGLMPGAGG-T-----------------QRLVRAVGK--FKAMRMALTG 166 (261)
T ss_pred EEcHHHHHHHhCCE--EEecCCCEeeCcccccccCCCCcH-H-----------------HHHHHHhCH--HHHHHHHHcC
Confidence 99999999999997 9999999887654443321 1111 0 112233332 2334455556
Q ss_pred ccccHHHHHHcCCceEEecCC
Q 035798 277 YHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 277 ~~lsA~EAleyGLID~Ii~~~ 297 (313)
..++++||+++||||+|+...
T Consensus 167 ~~~~a~eA~~~Glv~~vv~~~ 187 (261)
T PRK08138 167 CMVPAPEALAIGLVSEVVEDE 187 (261)
T ss_pred CCCCHHHHHHCCCCcEecCch
Confidence 679999999999999999754
No 68
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=97.93 E-value=0.00026 Score=66.87 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=92.2
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCE-EEEEcCCCCCCCCCCCcccc----c------------hHHHHHHHHHhcCCeEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPI-YLYINSTGTTRDDGESVGME----S------------EGFAIYDTLMQMKCEVH 191 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I-~LyINSPGGsv~~~e~vg~v----~------------aGlAIYDtm~~i~~~V~ 191 (313)
++.++...+...|..++.++ ++ .|.|.+.|..+..|--+... . ....++..|..++.||.
T Consensus 32 l~~~m~~el~~al~~~~~d~---~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 108 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFDD---DAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTI 108 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCC---CceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 78888888888777776432 33 34445555433222211110 0 01234566777889999
Q ss_pred EEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 035798 192 TVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVT 270 (313)
Q Consensus 192 Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~ 270 (313)
..+-|.|.+.|.-|+++++- |++.++++|.+=....|.. +.+ .. ..+.+..| .....
T Consensus 109 Aav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~~~iG--~~~a~ 166 (275)
T PRK09120 109 AMVNGWCFGGGFSPLVACDL--AIAADEAQFGLSEINWGIPPGGG-VS-----------------KAMADTVG--HRDAL 166 (275)
T ss_pred EEEcCEEechhHHHHHhCCE--EEEeCCcEecCCccccCCCCCcc-hH-----------------HHHHHHcC--HHHHH
Confidence 99999999999999999998 9999999987744333322 111 11 12233334 23334
Q ss_pred HhhcCCccccHHHHHHcCCceEEecCC
Q 035798 271 KTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 271 ~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+++-....|+|+||+++||||+|+...
T Consensus 167 ~llltg~~~~A~eA~~~Glv~~vv~~~ 193 (275)
T PRK09120 167 YYIMTGETFTGRKAAEMGLVNESVPLA 193 (275)
T ss_pred HHHhcCCccCHHHHHHcCCcceecCHH
Confidence 455555679999999999999999754
No 69
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=97.92 E-value=0.00028 Score=66.29 Aligned_cols=151 Identities=16% Similarity=0.113 Sum_probs=97.6
Q ss_pred EEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCC-CCCCCCCcccc-------c-------hHHHHHHH
Q 035798 123 VYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGT-TRDDGESVGME-------S-------EGFAIYDT 182 (313)
Q Consensus 123 IfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGG-sv~~~e~vg~v-------~-------aGlAIYDt 182 (313)
|.|+-| ++.++.+.+.+.|..++.++.. -.|.|.+.|+ .+..|--+..+ . ....+++.
T Consensus 24 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v--~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (269)
T PRK06127 24 ITFNNPARHNAMSLDMWEALPQALAAAEDDDAI--RVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAA 101 (269)
T ss_pred EEecCCCccCCCCHHHHHHHHHHHHHHHhCCCc--EEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence 455544 7888889999888877653222 2344455553 22222111100 0 01124566
Q ss_pred HHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035798 183 LMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKH 261 (313)
Q Consensus 183 m~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~ 261 (313)
|..++.||...+-|.|.+.|.-|+++++- |++.++++|.+.....|.. +.+ .. ..+.+.
T Consensus 102 i~~~~kPvIaav~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~~~ 161 (269)
T PRK06127 102 LADYAKPTIACIRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLGLGYGYD-GV-----------------KNLVDL 161 (269)
T ss_pred HHhCCCCEEEEECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhCCCCCcc-HH-----------------HHHHHH
Confidence 77888999999999999999999999998 9999999998877665432 111 11 112222
Q ss_pred hCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 262 TGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 262 TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.| .....+++-....++++||+++||||+|+...
T Consensus 162 vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 195 (269)
T PRK06127 162 VG--PSAAKDLFYTARRFDAAEALRIGLVHRVTAAD 195 (269)
T ss_pred hC--HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHH
Confidence 23 23445555566789999999999999999744
No 70
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=97.92 E-value=0.0003 Score=65.33 Aligned_cols=145 Identities=17% Similarity=0.184 Sum_probs=91.6
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccc-------------cchHHHHHHHHHhcCCeEEEEEc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGM-------------ESEGFAIYDTLMQMKCEVHTVAV 195 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~-------------v~aGlAIYDtm~~i~~~V~Tv~~ 195 (313)
++.++.+.+...+..++..+..+ .|.|.+.|..+..|--+.. ......++..|..++.||...+-
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 102 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKDDNVR--VVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIH 102 (257)
T ss_pred CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 67788888888887776432222 2334444433222111110 01123466677788899999999
Q ss_pred ccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhc
Q 035798 196 GAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIR 274 (313)
Q Consensus 196 G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~ 274 (313)
|.|.+.|.-|+++++- |++.++++|.+-....|.. +.+. . ..+.+..|. ..-.+++-
T Consensus 103 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~-~-----------------~~l~~~vG~--~~a~~l~l 160 (257)
T PRK07658 103 GAALGGGLELAMSCHI--RFATESAKLGLPELNLGLIPGFAG-T-----------------QRLPRYVGK--AKALEMML 160 (257)
T ss_pred CeeeeHHHHHHHhCCE--EEecCCCcccCcccccCCCCCCcH-H-----------------HHHHHHhCH--HHHHHHHH
Confidence 9999999999999997 9999999887654443322 1110 0 111222232 23345555
Q ss_pred CCccccHHHHHHcCCceEEecCC
Q 035798 275 RPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 275 rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
....++++||+++||||+|+...
T Consensus 161 ~g~~~~a~eA~~~Glv~~vv~~~ 183 (257)
T PRK07658 161 TSEPITGAEALKWGLVNGVFPEE 183 (257)
T ss_pred cCCCcCHHHHHHcCCcCeecChh
Confidence 66789999999999999999754
No 71
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.91 E-value=0.00012 Score=71.38 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=93.1
Q ss_pred CCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccc--h--HHHHHHHH---HhcCCeEE
Q 035798 119 HGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMES--E--GFAIYDTL---MQMKCEVH 191 (313)
Q Consensus 119 ~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~--a--GlAIYDtm---~~i~~~V~ 191 (313)
++++-..+|-++++-...... +..+-..- .-||.-++||||... |... . +-+|...+ ...+.|+.
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R-~m~lA~~f-~iPvVtlvDTpGa~~------g~~aE~~G~~~aia~~l~a~s~~~VP~I 193 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALR-LMKMAERF-KMPIITFIDTPGAYP------GIGAEERGQSEAIARNLREMARLGVPVI 193 (316)
T ss_pred cccccccCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEECCCCCC------CHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 455555668888877666655 44333322 579999999999874 2211 1 33455544 45579999
Q ss_pred EEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 035798 192 TVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTK 271 (313)
Q Consensus 192 Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~ 271 (313)
++++|-|+|.|++.++.++. ++|.||+.+.+=.|.+. .. +.++.- . ..++..+
T Consensus 194 sVViGeggsGGAla~~~aD~--v~m~~~a~~sVisPEg~-------a~--Il~kd~-----~-----------~a~~aae 246 (316)
T TIGR00513 194 CTVIGEGGSGGALAIGVGDK--VNMLEYSTYSVISPEGC-------AA--ILWKDA-----S-----------KAPKAAE 246 (316)
T ss_pred EEEecccccHHHhhhccCCE--EEEecCceEEecCHHHH-------HH--Hhccch-----h-----------hHHHHHH
Confidence 99999999999998887876 99999999988877531 11 111110 0 0122222
Q ss_pred hhcCCccccHHHHHHcCCceEEecCC
Q 035798 272 TIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 272 ~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
. .-+||+++++.|+||+|+...
T Consensus 247 ~----~~~ta~~l~~~G~iD~II~ep 268 (316)
T TIGR00513 247 A----MKITAPDLKELGLIDSIIPEP 268 (316)
T ss_pred H----ccCCHHHHHHCCCCeEeccCC
Confidence 1 445899999999999999854
No 72
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.91 E-value=0.00014 Score=73.06 Aligned_cols=134 Identities=17% Similarity=0.215 Sum_probs=86.6
Q ss_pred CccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccc--hHHHHHHHH---HhcCCeEEEEEcccchhH
Q 035798 127 MPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMES--EGFAIYDTL---MQMKCEVHTVAVGAAIGM 201 (313)
Q Consensus 127 g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~--aGlAIYDtm---~~i~~~V~Tv~~G~AaS~ 201 (313)
|-++++-...... ++.|-... .-||.-+||+||.... . +.+. .+-+|...+ ...+.|+.++++|-+.|.
T Consensus 200 G~~~peGyRKAlR-~mklAekf-~lPIVtLVDTpGA~pG--~--~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSG 273 (431)
T PLN03230 200 AMPQPNGYRKALR-FMRHAEKF-GFPILTFVDTPGAYAG--I--KAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSG 273 (431)
T ss_pred CCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCcCCC--H--HHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcH
Confidence 4456666655555 33333222 5799999999998641 1 1111 123455544 455689999999999999
Q ss_pred HHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccH
Q 035798 202 ACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDS 281 (313)
Q Consensus 202 AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA 281 (313)
|++.++.|+. .+|++||.+.+-.|.+. . .|.++.-.+ .++..+ ..-+||
T Consensus 274 GAlalg~aD~--VlMle~A~ysVisPEga-------A--sILwkd~~~----------------A~eAAe----alkitA 322 (431)
T PLN03230 274 GALAIGCGNR--MLMMENAVYYVASPEAC-------A--AILWKSAAA----------------APKAAE----ALRITA 322 (431)
T ss_pred HHHHhhcCCE--EEEecCCEEEecCHHHH-------H--HHHhccccc----------------hHHHHH----HcCCCH
Confidence 9999998986 99999999887777421 1 111111000 111111 237899
Q ss_pred HHHHHcCCceEEecCC
Q 035798 282 RRAKEFGVIDKVLWRG 297 (313)
Q Consensus 282 ~EAleyGLID~Ii~~~ 297 (313)
+++++.|+||+||...
T Consensus 323 ~dL~~~GiID~II~Ep 338 (431)
T PLN03230 323 AELVKLGVVDEIVPEP 338 (431)
T ss_pred HHHHhCCCCeEeccCC
Confidence 9999999999999754
No 73
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=97.91 E-value=0.00029 Score=65.66 Aligned_cols=150 Identities=9% Similarity=0.028 Sum_probs=92.8
Q ss_pred EEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc--------------chHHHHHHHH
Q 035798 123 VYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME--------------SEGFAIYDTL 183 (313)
Q Consensus 123 IfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v--------------~aGlAIYDtm 183 (313)
|.|+.| ++.++.+.+...|..++. + .+ .|.|-+.|+.+..|--++.. .....++..|
T Consensus 17 itlnrp~~~Nal~~~~~~~L~~~l~~~~~-~-vr--~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (255)
T PRK07112 17 LQLHRPEAQNTINDRLIAECMDVLDRCEH-A-AT--IVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRL 92 (255)
T ss_pred EEEcCCCccCCCCHHHHHHHHHHHHHhhc-C-ce--EEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence 455555 788888888888877761 1 22 22333333322211111100 0012345566
Q ss_pred HhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 035798 184 MQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 263 (313)
Q Consensus 184 ~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG 263 (313)
..++.||...+-|.|.+.|..|+++++- |++.++++|.+.....|... +.. ...+.+..|
T Consensus 93 ~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p-----~~~-------------~~~l~~~vg 152 (255)
T PRK07112 93 ATGPYVTIAHVRGKVNAGGIGFVAASDI--VIADETAPFSLSELLFGLIP-----ACV-------------LPFLIRRIG 152 (255)
T ss_pred HcCCCCEEEEEecEEEcchhHHHHcCCE--EEEcCCCEEeCchhhhccCc-----chh-------------hHHHHHHhC
Confidence 7778899999999999999999999997 99999999977655443321 100 011223333
Q ss_pred CCHHHHHHhhcCCccccHHHHHHcCCceEEecCCc
Q 035798 264 NSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 264 ~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~~ 298 (313)
.....+++-...-++|+||+++||||+|+...+
T Consensus 153 --~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 185 (255)
T PRK07112 153 --TQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSD 185 (255)
T ss_pred --HHHHHHHHHhCCcccHHHHHHcCCCceecCcHH
Confidence 233344555556799999999999999987543
No 74
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=97.91 E-value=0.00053 Score=63.95 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=91.9
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCC-CCCCCCCcccc------------chHHHHHHHHHhcCCeEEEEEc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGT-TRDDGESVGME------------SEGFAIYDTLMQMKCEVHTVAV 195 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGG-sv~~~e~vg~v------------~aGlAIYDtm~~i~~~V~Tv~~ 195 (313)
++.++...+...|..++.++. .-.|.|.+-|+ .+..|--+..+ .....++..|..++.||...+-
T Consensus 26 l~~~~~~~l~~al~~~~~d~~--vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 26 WTADSLQALKQLVLELNADKD--VYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCHHHHHHHHHHHHHHHhCCC--ceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 778888888888877764322 22344455453 23222111100 0012355667778899999999
Q ss_pred ccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhc
Q 035798 196 GAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIR 274 (313)
Q Consensus 196 G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~ 274 (313)
|.|.+.|.-|+++++- |++.++++|.+-....|.. +.+ .+ ..+.+..|. ....+++=
T Consensus 104 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~~~iG~--~~a~~l~l 161 (258)
T PRK09076 104 GYAMGGGLECALACDI--RIAEEQAQMALPEASVGLLPCAG-GT-----------------QNLPWLVGE--GWAKRMIL 161 (258)
T ss_pred CEEecHHHHHHHhCCE--EEecCCCEeeCcccccCCCCCcc-HH-----------------HHHHHHhCH--HHHHHHHH
Confidence 9999999999999997 9999999987755544332 111 11 112222332 22334444
Q ss_pred CCccccHHHHHHcCCceEEecCC
Q 035798 275 RPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 275 rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
....++|+||+++||||+|+...
T Consensus 162 ~g~~~~a~eA~~~Glv~~vv~~~ 184 (258)
T PRK09076 162 CGERVDAATALRIGLVEEVVEKG 184 (258)
T ss_pred cCCcCCHHHHHHCCCCceecCch
Confidence 55678999999999999999865
No 75
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=97.90 E-value=0.00026 Score=66.06 Aligned_cols=144 Identities=14% Similarity=0.113 Sum_probs=90.4
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCC-CCCCCCCcccc----------c-hHHHHHHHHHhcCCeEEEEEc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGT-TRDDGESVGME----------S-EGFAIYDTLMQMKCEVHTVAV 195 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGG-sv~~~e~vg~v----------~-aGlAIYDtm~~i~~~V~Tv~~ 195 (313)
++.++.+.+...|..++.+ .+|. |.|.+.|+ .+..|--+... . ....++..|..++.||.+.+-
T Consensus 26 l~~~~~~~l~~al~~~~~d---~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 102 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYD---RQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQ 102 (256)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 6778888888888777643 3343 33444443 22222111100 0 112356677788899999999
Q ss_pred ccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhc
Q 035798 196 GAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIR 274 (313)
Q Consensus 196 G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~ 274 (313)
|.|.+.|+-|+++++- |++.++++|.+-.+..|.. +.+ .. ..+.+..|. ..-.+++-
T Consensus 103 G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~~~~~-~~-----------------~~l~~~vG~--~~A~~lll 160 (256)
T TIGR03210 103 GYAIGGGNVLVTICDL--TIASEKAQFGQVGPKVGSVDPGY-GT-----------------ALLARVVGE--KKAREIWY 160 (256)
T ss_pred CEEehhhHHHHHhCCE--EEEeCCCEEecccccccccCCcc-HH-----------------HHHHHHhCH--HHHHHHHH
Confidence 9999999999999997 9999999987755544321 100 01 112223332 22233333
Q ss_pred CCccccHHHHHHcCCceEEecCC
Q 035798 275 RPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 275 rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
....|+|+||+++||||+|+...
T Consensus 161 ~g~~~~a~eA~~~Glv~~vv~~~ 183 (256)
T TIGR03210 161 LCRRYTAQEALAMGLVNAVVPHD 183 (256)
T ss_pred hCCCcCHHHHHHcCCceeeeCHH
Confidence 35679999999999999999754
No 76
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.89 E-value=0.00022 Score=69.50 Aligned_cols=141 Identities=17% Similarity=0.214 Sum_probs=94.5
Q ss_pred cCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccc--h--HHHHHHHH---HhcCCeE
Q 035798 118 LHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMES--E--GFAIYDTL---MQMKCEV 190 (313)
Q Consensus 118 l~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~--a--GlAIYDtm---~~i~~~V 190 (313)
.++++-..+|-++++....... +..+-..- .-||.-+|+|||... |... . +-+|...+ ...+.|+
T Consensus 121 ~~e~~~~~~G~~~peg~rKa~R-~m~lA~~f-~lPIVtlvDTpGa~~------G~~aE~~G~~~aia~~l~~~a~~~VP~ 192 (319)
T PRK05724 121 TKEKIRRNFGMPRPEGYRKALR-LMKMAEKF-GLPIITFIDTPGAYP------GIGAEERGQSEAIARNLREMARLKVPI 192 (319)
T ss_pred ccccccccCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCCCC------CHHHHhccHHHHHHHHHHHHhCCCCCE
Confidence 3556656778888877666655 33333222 579999999999764 2211 1 23444444 4667999
Q ss_pred EEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 035798 191 HTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVT 270 (313)
Q Consensus 191 ~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~ 270 (313)
.++++|-+.|.|++.++.++. .+|.|+|.+.+-.|.+. ..| .++. . ...++..
T Consensus 193 IsVIiGeg~sGGAla~~~aD~--v~m~~~A~~svisPEg~-------a~I--l~~~-----~-----------~~a~~aa 245 (319)
T PRK05724 193 ICTVIGEGGSGGALAIGVGDR--VLMLEYSTYSVISPEGC-------ASI--LWKD-----A-----------SKAPEAA 245 (319)
T ss_pred EEEEeCCccHHHHHHHhccCe--eeeecCceEeecCHHHH-------HHH--HhcC-----c-----------hhHHHHH
Confidence 999999999999999888887 99999999987777421 111 1110 0 1122233
Q ss_pred HhhcCCccccHHHHHHcCCceEEecCC
Q 035798 271 KTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 271 ~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+ -..+||+++++.|+||+|+...
T Consensus 246 e----~~~ita~~l~~~g~iD~II~Ep 268 (319)
T PRK05724 246 E----AMKITAQDLKELGIIDEIIPEP 268 (319)
T ss_pred H----HcCCCHHHHHHCCCceEeccCC
Confidence 3 3448999999999999999754
No 77
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=97.89 E-value=0.00065 Score=62.97 Aligned_cols=143 Identities=14% Similarity=0.127 Sum_probs=90.0
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcc-------ccchHHHHHHHHHhcCCeEEEEEcccchhH
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVG-------MESEGFAIYDTLMQMKCEVHTVAVGAAIGM 201 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg-------~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~ 201 (313)
++.++...+...+..++. + .-=.|.|.+.|..+..|--+. .......++..|..++.||...+-|.|.+.
T Consensus 24 l~~~~~~~l~~al~~~~~-~--~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~Gg 100 (243)
T PRK07854 24 LNAELCEELREAVRKAVD-E--SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGA 100 (243)
T ss_pred CCHHHHHHHHHHHHHHhc-C--CceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Confidence 788888888888877652 2 222344444443332221111 001123456667788899999999999999
Q ss_pred HHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccH
Q 035798 202 ACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDS 281 (313)
Q Consensus 202 AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA 281 (313)
|.-|+++++- |++.++++|.+=....|.. .+. .....+.+..|. ....+++-....++|
T Consensus 101 G~~lal~cD~--~ia~~~a~f~~pe~~~G~~-----p~~------------g~~~~l~~~~G~--~~a~~l~ltg~~~~a 159 (243)
T PRK07854 101 GLQLAMACDL--RVVAPEAYFQFPVAKYGIA-----LDN------------WTIRRLSSLVGG--GRARAMLLGAEKLTA 159 (243)
T ss_pred HHHHHHhCCE--EEEcCCCEEeccccccccC-----CCc------------cHHHHHHHHhCH--HHHHHHHHcCCCcCH
Confidence 9999999997 9999999886533322221 010 001123333442 334455556779999
Q ss_pred HHHHHcCCceEEec
Q 035798 282 RRAKEFGVIDKVLW 295 (313)
Q Consensus 282 ~EAleyGLID~Ii~ 295 (313)
+||+++||||+|.+
T Consensus 160 ~eA~~~Glv~~v~~ 173 (243)
T PRK07854 160 EQALATGMANRIGT 173 (243)
T ss_pred HHHHHCCCcccccC
Confidence 99999999999954
No 78
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=97.88 E-value=0.00032 Score=65.29 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=91.8
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCC-CCCCCCCcccc----------------chHHHHHHHHHhcCCeEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGT-TRDDGESVGME----------------SEGFAIYDTLMQMKCEVH 191 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGG-sv~~~e~vg~v----------------~aGlAIYDtm~~i~~~V~ 191 (313)
++.++.+.+...|..++..+.. -.|.|.+.|+ .+..|--+... .....+++.|..++.||.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~v--~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 104 (260)
T PRK05980 27 LNYALIDRLLARLDAIEVDESV--RAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVI 104 (260)
T ss_pred CCHHHHHHHHHHHHHHhhCCCc--EEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 7788888888888777643222 2334445453 33222211100 001235566777889999
Q ss_pred EEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 035798 192 TVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVT 270 (313)
Q Consensus 192 Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~ 270 (313)
..+-|.|.+.|+-|+++++- |++.++++|.+=....|.. +.+. . ..+.+..| .....
T Consensus 105 aav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~-~-----------------~~l~~~vG--~~~a~ 162 (260)
T PRK05980 105 AAVNGLAFGGGCEITEAVHL--AIASERALFAKPEIRLGMPPTFGG-T-----------------QRLPRLAG--RKRAL 162 (260)
T ss_pred EEEcCEEEhhhhHHhHhCCE--EEecCCCEecCcccccCCCCCchH-h-----------------hHHHhhcC--HHHHH
Confidence 99999999999999999997 9999999887644433321 1111 1 11222333 23334
Q ss_pred HhhcCCccccHHHHHHcCCceEEecCC
Q 035798 271 KTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 271 ~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+++-....++++||+++||||+|+...
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~vv~~~ 189 (260)
T PRK05980 163 ELLLTGDAFSAERALEIGLVNAVVPHE 189 (260)
T ss_pred HHHHcCCccCHHHHHHcCCCCcccCHH
Confidence 555556789999999999999999754
No 79
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=97.88 E-value=0.00048 Score=64.07 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=90.3
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc--------c--hH-----HHHHHHHHhcCCeEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME--------S--EG-----FAIYDTLMQMKCEVHTV 193 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v--------~--aG-----lAIYDtm~~i~~~V~Tv 193 (313)
++.++.+.+...|..++.++ .+ .|.|.+.|..+..|--+..+ . .. -.++..|..++.||.+.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 99 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-AR--ALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCA 99 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cE--EEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67888888888888776532 32 23344444333222111000 0 00 12455677888999999
Q ss_pred EcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Q 035798 194 AVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKT 272 (313)
Q Consensus 194 ~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~ 272 (313)
+-|.|.+.|+.|+++++- |++.++++|.+-....|.. +.+ ... .+.+..|. ..-.++
T Consensus 100 v~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~lG~~p~~g-~~~-----------------~l~~~vG~--~~a~~l 157 (256)
T TIGR02280 100 VNGVAAGAGANLALACDI--VLAAESARFIQAFAKIGLIPDSG-GTW-----------------SLPRLVGR--ARAMGL 157 (256)
T ss_pred ECCeeehHHHHHHHhCCE--EEecCCCEEeChhhhcCCCCCcc-HHH-----------------HHHHHhCH--HHHHHH
Confidence 999999999999999997 9999999987644443321 111 110 11222222 233344
Q ss_pred hcCCccccHHHHHHcCCceEEecCC
Q 035798 273 IRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 273 ~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+-....++++||+++||||+|+...
T Consensus 158 ~l~g~~~~a~eA~~~Glv~~vv~~~ 182 (256)
T TIGR02280 158 AMLGEKLDARTAASWGLIWQVVDDA 182 (256)
T ss_pred HHcCCCCCHHHHHHcCCcceeeChH
Confidence 4455679999999999999999754
No 80
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=97.87 E-value=0.00047 Score=64.08 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=94.0
Q ss_pred EEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCccccc------------hHHH-HHHHH
Q 035798 123 VYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGMES------------EGFA-IYDTL 183 (313)
Q Consensus 123 IfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v~------------aGlA-IYDtm 183 (313)
|.|+-| ++.++.+.+...|-.++.+ .++. |.|-+.|+.+..|--++.+. .... ++..|
T Consensus 12 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d---~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (255)
T PRK06563 12 IGLDRPAKRNAFDSAMLDDLALALGEYEAD---DELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVG 88 (255)
T ss_pred EEECCcccccCCCHHHHHHHHHHHHHHhhC---CCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHH
Confidence 455544 7788888888888777643 2343 44455554443322221100 0111 12246
Q ss_pred HhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035798 184 MQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHT 262 (313)
Q Consensus 184 ~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~T 262 (313)
+.++.||.+.+-|.|.+.|+.|+++++- |++.++++|.+.....|.. +.+ ..- .+.+..
T Consensus 89 ~~~~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g-~~~-----------------~l~~~v 148 (255)
T PRK06563 89 RRLSKPLVVAVQGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRGILPFGG-ATL-----------------RFPQAA 148 (255)
T ss_pred hcCCCCEEEEEcCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcCCCCCcc-HHH-----------------HHHHHh
Confidence 6678999999999999999999999997 9999999987766554432 111 110 111222
Q ss_pred CCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 263 GNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 263 G~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
|. ....+++-....|+|+||+++||||+|+...
T Consensus 149 G~--~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK06563 149 GW--GNAMRYLLTGDEFDAQEALRLGLVQEVVPPG 181 (255)
T ss_pred hH--HHHHHHHHcCCCcCHHHHHHcCCCcEeeCHH
Confidence 32 2233455556679999999999999999754
No 81
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=97.87 E-value=0.00025 Score=66.41 Aligned_cols=150 Identities=13% Similarity=0.133 Sum_probs=93.1
Q ss_pred EEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCC-C-CCCCCCcccc-----------chHHHHHHHHH
Q 035798 123 VYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGT-T-RDDGESVGME-----------SEGFAIYDTLM 184 (313)
Q Consensus 123 IfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGG-s-v~~~e~vg~v-----------~aGlAIYDtm~ 184 (313)
|.|+-| ++.++.+.+...+..++. |+.+ .|.|.+.|| . +..|--+..+ .....++..|.
T Consensus 17 itlnrp~~~Nal~~~~~~~l~~al~~~~~-d~v~--~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~ 93 (261)
T PRK11423 17 ITFNNPAKRNALSKVLIDDLMQALSDLNR-PEIR--VVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQ 93 (261)
T ss_pred EEEcCccccCCCCHHHHHHHHHHHHHHhc-CCce--EEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 445544 678888888888877664 2222 234444322 2 2111111100 11123566677
Q ss_pred hcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 035798 185 QMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTG 263 (313)
Q Consensus 185 ~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG 263 (313)
.++.||.+.+-|.|.+.|.-|+++++- |++.++++|.+-....|.. +.+ .. ..+.+..|
T Consensus 94 ~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~g-~~-----------------~~l~~~vg 153 (261)
T PRK11423 94 KFPKPVIAMVEGSVWGGAFELIMSCDL--IIAASTSTFAMTPANLGVPYNLS-GI-----------------LNFTNDAG 153 (261)
T ss_pred hCCCCEEEEEecEEechHHHHHHhCCE--EEecCCCEecCchhhcCCCCCcc-HH-----------------HHHHHHhH
Confidence 888999999999999999999999997 9999999886655443331 100 00 12222223
Q ss_pred CCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 264 NSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 264 ~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.....+++-....++|+||+++||||+|+...
T Consensus 154 --~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~ 185 (261)
T PRK11423 154 --FHIVKEMFFTASPITAQRALAVGILNHVVEVE 185 (261)
T ss_pred --HHHHHHHHHcCCCcCHHHHHHcCCcCcccCHH
Confidence 23344444456789999999999999999753
No 82
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=97.87 E-value=0.00046 Score=65.04 Aligned_cols=145 Identities=15% Similarity=0.153 Sum_probs=90.8
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCC-------CCCCCC---CCCcc---cc-chHHHHHHHHHhcCCeEEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINST-------GTTRDD---GESVG---ME-SEGFAIYDTLMQMKCEVHTVA 194 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSP-------GGsv~~---~e~vg---~v-~aGlAIYDtm~~i~~~V~Tv~ 194 (313)
++.++.+.+...|-.++.++..+ .|.|.+. |+++.. .+..+ .. .....+++.|..++.||...+
T Consensus 37 l~~~~~~~l~~al~~~~~d~~vr--~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 114 (273)
T PRK07396 37 FRPKTVKEMIDAFADARDDDNIG--VIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMV 114 (273)
T ss_pred CCHHHHHHHHHHHHHHhhCCCce--EEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEE
Confidence 78888888988888776533222 2333333 333310 00000 00 011234566778889999999
Q ss_pred cccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Q 035798 195 VGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTI 273 (313)
Q Consensus 195 ~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~ 273 (313)
-|.|.+.|.-|+++++- |++.++++|.+=.+..|.. +.+ ... .+.+..| .....+++
T Consensus 115 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~-~~~-----------------~l~~~vG--~~~a~~l~ 172 (273)
T PRK07396 115 AGYAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVGSFDGGY-GAS-----------------YLARIVG--QKKAREIW 172 (273)
T ss_pred CCEEehHHHHHHHhCCE--EEeeCCcEEecccccccccCCch-HHH-----------------HHHHHhh--HHHHHHHH
Confidence 99999999999999997 9999999988755554422 111 110 1222223 22334444
Q ss_pred cCCccccHHHHHHcCCceEEecCC
Q 035798 274 RRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 274 ~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
-....|+|+||+++||||+|+...
T Consensus 173 ltg~~~~A~eA~~~GLv~~vv~~~ 196 (273)
T PRK07396 173 FLCRQYDAQEALDMGLVNTVVPLA 196 (273)
T ss_pred HhCCCcCHHHHHHcCCcCeecCHH
Confidence 456689999999999999999753
No 83
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=97.87 E-value=0.00027 Score=66.62 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=92.8
Q ss_pred EEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCcccc------------c-------hHH
Q 035798 123 VYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGME------------S-------EGF 177 (313)
Q Consensus 123 IfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v------------~-------aGl 177 (313)
|.|+-| ++.++.+.+...|..++.++ ++. |.|.+-|..+..|--+... . ...
T Consensus 23 itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~---~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (276)
T PRK05864 23 ITLNRPERMNSMAFDVMVPLKEALAEVSYDN---SVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLD 99 (276)
T ss_pred EEecCCccccCCCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHH
Confidence 456554 77888888888887776432 333 3334434332211111000 0 012
Q ss_pred HHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHH
Q 035798 178 AIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS--GLLPASDVLIRAKEAMVNRDTLV 255 (313)
Q Consensus 178 AIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~--G~g~asDi~i~akel~~~r~~l~ 255 (313)
.+++.|..++.||...+-|.|.+.|+-|+++++- |++.++++|.+-....|.. +.|. .
T Consensus 100 ~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~~g~-~----------------- 159 (276)
T PRK05864 100 DVILALRRLHQPVIAAVNGPAIGGGLCLALAADI--RVASSSAYFRAAGINNGLTASELGL-S----------------- 159 (276)
T ss_pred HHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCE--EEeeCCCEecCcccccCCCCCCcch-h-----------------
Confidence 3455677788999999999999999999999997 9999999887654443322 1111 0
Q ss_pred HHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 256 KLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 256 ~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
..+.+..|. ....+++-....++|+||+++||||+|+...
T Consensus 160 ~~l~~~vG~--~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 199 (276)
T PRK05864 160 YLLPRAIGS--SRAFEIMLTGRDVDAEEAERIGLVSRQVPDE 199 (276)
T ss_pred eehHhhhCH--HHHHHHHHcCCccCHHHHHHcCCcceeeCHH
Confidence 112233442 2334444344568999999999999998754
No 84
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=97.87 E-value=0.00028 Score=66.82 Aligned_cols=147 Identities=12% Similarity=0.089 Sum_probs=93.2
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCC--CCCCCCCCccccc------h---H-----HHHHHHHHhcCCeEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTG--TTRDDGESVGMES------E---G-----FAIYDTLMQMKCEVHT 192 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPG--Gsv~~~e~vg~v~------a---G-----lAIYDtm~~i~~~V~T 192 (313)
++.++...+...|..++.++..+ .|.|-+.| +.+..|--+..+. + . ..++..|..++.||..
T Consensus 35 l~~~~~~eL~~al~~~~~d~~vr--~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 112 (278)
T PLN03214 35 MTLAMWRSLDDALTALENDPTVR--GVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVC 112 (278)
T ss_pred CCHHHHHHHHHHHHHHHcCCCce--EEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 77788888888888776533222 23334433 2332221111000 0 0 1245567777889999
Q ss_pred EEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Q 035798 193 VAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKT 272 (313)
Q Consensus 193 v~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~ 272 (313)
.+-|.|.+.|.-|+++++- |++.++++|.+-....|.. ..+.. ....+.+..| .....++
T Consensus 113 aV~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~----~p~~~------------~~~~l~~~~G--~~~a~~l 172 (278)
T PLN03214 113 AIRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALGIP----VPKFW------------ARLFMGRVID--RKVAESL 172 (278)
T ss_pred EEcCcccchHHHHHHhCCE--EEecCCCEecCcHHHhCCC----CCChh------------HHHHHHHhcC--HHHHHHH
Confidence 9999999999999999997 9999999887754443331 00100 0113444444 3444556
Q ss_pred hcCCccccHHHHHHcCCceEEecCC
Q 035798 273 IRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 273 ~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+-...-|+++||+++||||+|+...
T Consensus 173 lltg~~~~a~eA~~~Glv~~vv~~~ 197 (278)
T PLN03214 173 LLRGRLVRPAEAKQLGLIDEVVPAA 197 (278)
T ss_pred HHcCCccCHHHHHHcCCCcEecChH
Confidence 6667789999999999999999754
No 85
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=97.86 E-value=0.00033 Score=65.46 Aligned_cols=144 Identities=16% Similarity=0.152 Sum_probs=91.1
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCC-CCCCCCCccc-----------cc--hHHHHHHHHHhcCCeEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGT-TRDDGESVGM-----------ES--EGFAIYDTLMQMKCEVHTV 193 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGG-sv~~~e~vg~-----------v~--aGlAIYDtm~~i~~~V~Tv 193 (313)
++.++.+.+...|..++.. .++. |.|.+.|+ .+..|--+.. .. ....+++.|..++.||...
T Consensus 27 l~~~~~~el~~~l~~~~~d---~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 103 (259)
T TIGR01929 27 FRPLTVKEIIQALDDARED---PDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAM 103 (259)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 6778888888877777643 2333 33444442 2221111100 00 1123566777888899999
Q ss_pred EcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Q 035798 194 AVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKT 272 (313)
Q Consensus 194 ~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~ 272 (313)
+-|.|.+.|.-|.++++- |++.++++|.+-....|.. +.+ ... .+.+..| .....++
T Consensus 104 v~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~p~~~-~~~-----------------~l~~~vG--~~~a~~l 161 (259)
T TIGR01929 104 VNGYAIGGGHVLHVVCDL--TIAAENARFGQTGPKVGSFDGGY-GSS-----------------YLARIVG--QKKAREI 161 (259)
T ss_pred EcCEEehHHHHHHHhCCE--EEecCCCEecCcccccccCCCcc-HHH-----------------HHHHHhH--HHHHHHH
Confidence 999999999999999997 9999999998876665432 111 111 1122222 1223344
Q ss_pred hcCCccccHHHHHHcCCceEEecCC
Q 035798 273 IRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 273 ~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+-....++|+||+++||||+|+...
T Consensus 162 ~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (259)
T TIGR01929 162 WFLCRQYDAEQALDMGLVNTVVPLA 186 (259)
T ss_pred HHhCCccCHHHHHHcCCcccccCHH
Confidence 4455679999999999999999753
No 86
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=97.86 E-value=0.00035 Score=65.55 Aligned_cols=144 Identities=10% Similarity=0.080 Sum_probs=88.6
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCcccc-------c-------hHHHHHHHHHhcCCeEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGME-------S-------EGFAIYDTLMQMKCEVHTV 193 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v-------~-------aGlAIYDtm~~i~~~V~Tv 193 (313)
++.++...+.+.|..++.++ +|. |.|.+.|+.+..|--+..+ . ....++..|..++.||...
T Consensus 36 l~~~~~~~l~~~l~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 112 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDP---DVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSA 112 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCC---CceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 67888888888888777533 333 4444555443322111100 0 0112344556677899999
Q ss_pred EcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Q 035798 194 AVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKT 272 (313)
Q Consensus 194 ~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~ 272 (313)
+-|.|.+.|+-|.++++- |++.++++|.+-....|.. +.+- .- .+.+..|. ....++
T Consensus 113 v~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~-~~-----------------~l~~~vG~--~~a~~l 170 (268)
T PRK07327 113 IHGPAVGAGLVAALLADI--SIAAKDARIIDGHTRLGVAAGDHA-AI-----------------VWPLLCGM--AKAKYY 170 (268)
T ss_pred EcCeeeehhhHHHHhCCE--EEecCCCEEeCcccccCCCCCcch-hh-----------------HHHHHhCH--HHHHHH
Confidence 999999999999999997 9999999887533333322 1111 10 01111221 223334
Q ss_pred hcCCccccHHHHHHcCCceEEecCC
Q 035798 273 IRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 273 ~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+-....|+|+||+++||||+|+...
T Consensus 171 ~ltg~~~~a~eA~~~Glv~~vv~~~ 195 (268)
T PRK07327 171 LLLCEPVSGEEAERIGLVSLAVDDD 195 (268)
T ss_pred HHcCCccCHHHHHHcCCcceecCHH
Confidence 4455679999999999999998754
No 87
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=97.86 E-value=0.00035 Score=65.22 Aligned_cols=97 Identities=22% Similarity=0.203 Sum_probs=68.5
Q ss_pred HHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHH
Q 035798 179 IYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKL 257 (313)
Q Consensus 179 IYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i 257 (313)
+++.|..++.||...+-|.|.+.|.-|+++++- |++.++++|.+-....|.. +.|- . ..
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~p~~g~-~-----------------~~ 154 (266)
T PRK09245 95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLGLIPGDGG-A-----------------WL 154 (266)
T ss_pred HHHHHHcCCCCEEEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccCcCCCcch-h-----------------hh
Confidence 455677778899999999999999999999997 9999999987755554432 1110 0 01
Q ss_pred HHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 258 LAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 258 ~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+.+..|. ....+++-....|+|+||+++||||+|+...
T Consensus 155 l~~~vG~--~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK09245 155 LPRIIGM--ARAAEMAFTGDAIDAATALEWGLVSRVVPAD 192 (266)
T ss_pred HHHHhhH--HHHHHHHHcCCCcCHHHHHHcCCcceecCHH
Confidence 2222222 2233444455689999999999999999754
No 88
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=97.86 E-value=0.00049 Score=64.53 Aligned_cols=149 Identities=16% Similarity=0.190 Sum_probs=95.3
Q ss_pred EEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCcccc-----------------------
Q 035798 123 VYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGME----------------------- 173 (313)
Q Consensus 123 IfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v----------------------- 173 (313)
|.|+-| ++.++.+.+...|..++.. ++|. |.|.+.|..+..|--+...
T Consensus 19 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (272)
T PRK06142 19 VTLNRPGKGNAMNPAFWSELPEIFRWLDAD---PEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREI 95 (272)
T ss_pred EEEcCCCccCCCCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHH
Confidence 445555 7888888888888777642 3443 3445555443322211100
Q ss_pred chHHHHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHH
Q 035798 174 SEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRD 252 (313)
Q Consensus 174 ~aGlAIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~ 252 (313)
.....+++.|..++.||...+-|.|.+.|.-|+++++- |++.++++|.+.....|.. +.|. .
T Consensus 96 ~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~-~-------------- 158 (272)
T PRK06142 96 LRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLGMVADVGS-L-------------- 158 (272)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhCCCCCchH-H--------------
Confidence 01123556677888999999999999999999999998 9999999886665554432 1111 0
Q ss_pred HHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecC
Q 035798 253 TLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWR 296 (313)
Q Consensus 253 ~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~ 296 (313)
..+.+..|. ....+++-...-++|+||+++||||+|+.+
T Consensus 159 ---~~l~~~~G~--~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~ 197 (272)
T PRK06142 159 ---QRLPRIIGD--GHLRELALTGRDIDAAEAEKIGLVNRVYDD 197 (272)
T ss_pred ---HHHHHHhCH--HHHHHHHHhCCCcCHHHHHHcCCccEecCC
Confidence 111222332 233444445566999999999999999975
No 89
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=97.84 E-value=0.00055 Score=65.21 Aligned_cols=97 Identities=15% Similarity=0.085 Sum_probs=70.4
Q ss_pred HHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHH
Q 035798 179 IYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKL 257 (313)
Q Consensus 179 IYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i 257 (313)
++..|..++.||...+-|.|.+.|+-|+++++- |++.++++|.+.....|.. +.+ ..- .
T Consensus 105 ~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~g-~~~-----------------~ 164 (296)
T PRK08260 105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRGIVPEAA-SSW-----------------F 164 (296)
T ss_pred HHHHHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcCcCCCcc-hhh-----------------h
Confidence 566777888999999999999999999999997 9999999998866654432 110 000 1
Q ss_pred HHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 258 LAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 258 ~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+.+..| .....+++-....++|+||+++||||+|+...
T Consensus 165 l~r~vG--~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~ 202 (296)
T PRK08260 165 LPRLVG--LQTALEWVYSGRVFDAQEALDGGLVRSVHPPD 202 (296)
T ss_pred HHHhhC--HHHHHHHHHcCCccCHHHHHHCCCceeecCHH
Confidence 112223 23334555556679999999999999999754
No 90
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=97.83 E-value=0.00059 Score=63.64 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=89.5
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCC-CCCCCCCcccc---------chHHHHHHHHHhcCCeEEEEEcccc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGT-TRDDGESVGME---------SEGFAIYDTLMQMKCEVHTVAVGAA 198 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGG-sv~~~e~vg~v---------~aGlAIYDtm~~i~~~V~Tv~~G~A 198 (313)
++.++.+.+...|..++.++..+ .|.|-+.|| .+..|--+... ...+.-+..+..++.||.+.+-|.|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a 105 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADPEQW--VAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVA 105 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcE--EEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEE
Confidence 67788888888887776533222 233444443 22222111100 0111112223356788999999999
Q ss_pred hhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCc
Q 035798 199 IGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPY 277 (313)
Q Consensus 199 aS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~ 277 (313)
.+.|+-|.++++- |++.++++|.+-....|.. +.+ .. ..+.+..| .....+++-...
T Consensus 106 ~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~~~vg--~~~a~~lll~g~ 163 (259)
T PRK06494 106 MGGGFELALACDL--IVAAENATFALPEPRVGLAALAG-GL-----------------HRLPRQIG--LKRAMGMILTGR 163 (259)
T ss_pred ecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCCCch-HH-----------------HHHHHHcC--HHHHHHHHHcCC
Confidence 9999999999997 9999999988766554432 111 00 11233344 333344555667
Q ss_pred cccHHHHHHcCCceEEecCC
Q 035798 278 HMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 278 ~lsA~EAleyGLID~Ii~~~ 297 (313)
.++|+||+++||||+|+...
T Consensus 164 ~~~a~eA~~~GLv~~vv~~~ 183 (259)
T PRK06494 164 RVTAREGLELGFVNEVVPAG 183 (259)
T ss_pred cCCHHHHHHcCCCcEecCHh
Confidence 89999999999999999754
No 91
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=97.82 E-value=0.00029 Score=66.11 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=89.1
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCcccc---------------chHHHHHHHHHhcCCeEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGME---------------SEGFAIYDTLMQMKCEVHT 192 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v---------------~aGlAIYDtm~~i~~~V~T 192 (313)
++.++...+...|..++.+ .++. |.|.+.|..+..|--+..+ .....++..|..++.||.+
T Consensus 30 l~~~~~~el~~al~~~~~d---~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 106 (265)
T PRK05674 30 FNAQMIRELILALDQVQSD---ASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLA 106 (265)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEE
Confidence 7778888888888777643 3333 3334444333222111100 0012344556677899999
Q ss_pred EEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Q 035798 193 VAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKT 272 (313)
Q Consensus 193 v~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~ 272 (313)
.+-|.|.+.|+-|+++++- |++.++++|.+=....|.. .+.. . ..+.+..|. .+..++
T Consensus 107 aV~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gi~-----p~~~--~-----------~~l~~~vG~--~~a~~l 164 (265)
T PRK05674 107 VVQGAAFGGALGLISCCDM--AIGADDAQFCLSEVRIGLA-----PAVI--S-----------PFVVKAIGE--RAARRY 164 (265)
T ss_pred EEcCEEEechhhHhhhcCE--EEEeCCCEEeCcccccCCC-----cchh--H-----------HHHHHHhCH--HHHHHH
Confidence 9999999999999999997 9999999887743332221 1110 0 012223332 233344
Q ss_pred hcCCccccHHHHHHcCCceEEecCC
Q 035798 273 IRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 273 ~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+-...-|+|+||+++||||+|+...
T Consensus 165 ~ltg~~~~a~eA~~~Glv~~vv~~~ 189 (265)
T PRK05674 165 ALTAERFDGRRARELGLLAESYPAA 189 (265)
T ss_pred HHhCcccCHHHHHHCCCcceecCHH
Confidence 4455678999999999999998753
No 92
>PLN02600 enoyl-CoA hydratase
Probab=97.82 E-value=0.00061 Score=63.35 Aligned_cols=144 Identities=15% Similarity=0.115 Sum_probs=89.4
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCC-CCCCCCCccc------------cchHHHHHHHHHhcCCeEEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGT-TRDDGESVGM------------ESEGFAIYDTLMQMKCEVHTVA 194 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGG-sv~~~e~vg~------------v~aGlAIYDtm~~i~~~V~Tv~ 194 (313)
++.++.+.+.+.|..++.++ ++. |.|-+.|| .+..|--+.. ......++..|..++.||...+
T Consensus 19 l~~~~~~~l~~~~~~~~~d~---~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 95 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADA---SARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVV 95 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 67888888888887776432 332 33334332 2222211110 0001234556777789999999
Q ss_pred cccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Q 035798 195 VGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTI 273 (313)
Q Consensus 195 ~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~ 273 (313)
-|.|.+.|.-|.++++- |++.++++|.+-....|.. +.+ .. ..+.+..| .....+++
T Consensus 96 ~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~~~~G--~~~a~~l~ 153 (251)
T PLN02600 96 EGAALGGGLELALSCDL--RICGEEAVFGLPETGLAIIPGAG-GT-----------------QRLPRLVG--RSRAKELI 153 (251)
T ss_pred cCeecchhHHHHHhCCE--EEeeCCCEEeCcccccCcCCCch-HH-----------------HHHHHHhC--HHHHHHHH
Confidence 99999999999999997 9999999987744333321 100 01 01222222 22334444
Q ss_pred cCCccccHHHHHHcCCceEEecCC
Q 035798 274 RRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 274 ~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
-....++++||+++||||+|+...
T Consensus 154 ltg~~~~a~eA~~~Glv~~vv~~~ 177 (251)
T PLN02600 154 FTGRRIGAREAASMGLVNYCVPAG 177 (251)
T ss_pred HhCCccCHHHHHHcCCCcEeeChh
Confidence 455679999999999999999754
No 93
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=97.82 E-value=0.00056 Score=63.48 Aligned_cols=147 Identities=15% Similarity=0.131 Sum_probs=90.5
Q ss_pred EEEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCccccc--------h-HHHHHHHHHhc
Q 035798 122 IVYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGMES--------E-GFAIYDTLMQM 186 (313)
Q Consensus 122 IIfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v~--------a-GlAIYDtm~~i 186 (313)
+|.|+-| ++.++.+.+...+..++.+ .++. |.|.+.|..+..|--+.... . ...++..|..+
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d---~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (248)
T PRK06072 12 IVTMSRPDKLNALNLEMRNEFISKLKQINAD---PKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFS 88 (248)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhC
Confidence 4555544 7788888888888777653 3343 33444444433322111110 0 12345567777
Q ss_pred CCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 035798 187 KCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSE 266 (313)
Q Consensus 187 ~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~ 266 (313)
+.||...+-|.|.+.|.-|.++++- |++.++++|.+.....|..-..-.. ..+.+..|.
T Consensus 89 ~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~~~~~~Gl~p~~g~~-----------------~~l~~~~g~-- 147 (248)
T PRK06072 89 DKIYISAINGVTAGACIGIALSTDF--KFASRDVKFVTAFQRLGLASDTGVA-----------------YFLLKLTGQ-- 147 (248)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEecchhhcCcCCCchHH-----------------HHHHHHhhH--
Confidence 8899999999999999999999997 9999999998755544332100011 011222231
Q ss_pred HHHHHhhcCCccccHHHHHHcCCceEE
Q 035798 267 EFVTKTIRRPYHMDSRRAKEFGVIDKV 293 (313)
Q Consensus 267 e~I~~~~~rd~~lsA~EAleyGLID~I 293 (313)
...+++-....++|+||+++||||++
T Consensus 148 -~a~~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 148 -RFYEILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred -HHHHHHHhCCccCHHHHHHCCCcccc
Confidence 22333334456899999999999964
No 94
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=97.81 E-value=0.00043 Score=65.90 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=67.5
Q ss_pred HHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 035798 179 IYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 258 (313)
Q Consensus 179 IYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~ 258 (313)
++..|..++.||.+.+-|.|.+.|.-|+++++- |++.++++|.+=....|..| . .- ...
T Consensus 110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl~~--~-~~--------~~l-------- 168 (288)
T PRK08290 110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGIPG--V-EY--------FAH-------- 168 (288)
T ss_pred HHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCcCc--c-hH--------HHH--------
Confidence 345567788999999999999999999999997 99999999875444333322 0 00 000
Q ss_pred HHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 259 AKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 259 A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.+..| .....+++-....++|+||+++||||+|+...
T Consensus 169 ~~~iG--~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~ 205 (288)
T PRK08290 169 PWELG--PRKAKELLFTGDRLTADEAHRLGMVNRVVPRD 205 (288)
T ss_pred HHHhh--HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHH
Confidence 11122 23344455556789999999999999999754
No 95
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=97.80 E-value=0.00068 Score=63.41 Aligned_cols=144 Identities=16% Similarity=0.146 Sum_probs=90.5
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCC-CCCCCCCcccc-------------chHHHHHHHHHhcCCeEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGT-TRDDGESVGME-------------SEGFAIYDTLMQMKCEVHTV 193 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGG-sv~~~e~vg~v-------------~aGlAIYDtm~~i~~~V~Tv 193 (313)
++.++.+.+...|..++.+ +++. |.|.+.|+ .+..|--+..+ .....++..|..++.||.+.
T Consensus 32 l~~~~~~~l~~~l~~~~~d---~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 108 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAAD---PSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAA 108 (262)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5778888888888777643 2333 33444442 23222111100 00123445667778999999
Q ss_pred EcccchhHHHHHHhcCCCCcEeeecCceEEEeCCC-CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 035798 194 AVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPR-LPS-SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTK 271 (313)
Q Consensus 194 ~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~-~g~-~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~ 271 (313)
+-|.|.+.|.-|+++++- |++.++++|.+=... .|. .+.+. . ..+.+..| .....+
T Consensus 109 v~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~~G~~p~~g~-~-----------------~~l~~~vG--~~~a~~ 166 (262)
T PRK06144 109 IAGACVGGGAAIAAACDL--RIATPSARFGFPIARTLGNCLSMSN-L-----------------ARLVALLG--AARVKD 166 (262)
T ss_pred ECCeeeehHHHHHHhCCE--EEecCCCEeechhHHhccCCCCccH-H-----------------HHHHHHhC--HHHHHH
Confidence 999999999999999997 999999988653321 221 11100 0 12333344 233445
Q ss_pred hhcCCccccHHHHHHcCCceEEecCC
Q 035798 272 TIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 272 ~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
++-....++|+||+++||||+|+...
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (262)
T PRK06144 167 MLFTARLLEAEEALAAGLVNEVVEDA 192 (262)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecCHH
Confidence 55566789999999999999999763
No 96
>PRK08321 naphthoate synthase; Validated
Probab=97.77 E-value=0.00079 Score=64.54 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=95.3
Q ss_pred EEEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEEE-----------EcCCCCCCCCC-----CCcc-----ccc-
Q 035798 122 IVYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYLY-----------INSTGTTRDDG-----ESVG-----MES- 174 (313)
Q Consensus 122 IIfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~Ly-----------INSPGGsv~~~-----e~vg-----~v~- 174 (313)
+|.|+-| ++.++...+...|..++.++..+-|.|. .=|.|+++... +..+ ...
T Consensus 37 ~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 116 (302)
T PRK08321 37 RIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDP 116 (302)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhh
Confidence 3455554 7888889999988887654332323332 11455554210 0000 000
Q ss_pred --h-HH---HHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeee-cCceEEEeCCCCCCC-CCCCHHHHHHHHHH
Q 035798 175 --E-GF---AIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMM-PHAKIMIQQPRLPSS-GLLPASDVLIRAKE 246 (313)
Q Consensus 175 --a-Gl---AIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~al-PnS~iMIHqP~~g~~-G~g~asDi~i~ake 246 (313)
. .. .+++.|..++.||...+-|.|.+.|.-|+++++- |++. ++++|.+=....|.. +.+ ..
T Consensus 117 ~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~p~~~-~~-------- 185 (302)
T PRK08321 117 ARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDADVGSFDGGY-GS-------- 185 (302)
T ss_pred hHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccccccCCCch-HH--------
Confidence 0 11 2345567778899999999999999999999997 9999 689987644443321 100 01
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 247 AMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 247 l~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
..+.+..|. ....+++-....|+|+||+++||||+|+...
T Consensus 186 ---------~~L~r~vG~--~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~ 225 (302)
T PRK08321 186 ---------AYLARQVGQ--KFAREIFFLGRTYSAEEAHDMGAVNAVVPHA 225 (302)
T ss_pred ---------HHHHHHhCH--HHHHHHHHcCCccCHHHHHHCCCceEeeCHH
Confidence 122333442 3344555566799999999999999999754
No 97
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.76 E-value=0.0012 Score=61.23 Aligned_cols=146 Identities=14% Similarity=0.180 Sum_probs=89.3
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccc--------------cchHHHHHHHHHhcCCeEEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGM--------------ESEGFAIYDTLMQMKCEVHTVA 194 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~--------------v~aGlAIYDtm~~i~~~V~Tv~ 194 (313)
++.+..+.+...+..++.++... -.|.+.+-|..+..|--+.. ......++..|..++.||...+
T Consensus 23 l~~~~~~eL~~al~~~~~d~~~~-~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 101 (239)
T PLN02267 23 LNPTLIDSIRSALRQVKSQATPG-SVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAV 101 (239)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCc-eEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 78888888888888776532111 23333333333322111110 0011224555777788999999
Q ss_pred cccchhHHHHHHhcCCCCcEeeec-CceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHh
Q 035798 195 VGAAIGMACLLLAAGTKGKRFMMP-HAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFV-TKT 272 (313)
Q Consensus 195 ~G~AaS~AalLLaAG~kGkR~alP-nS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I-~~~ 272 (313)
-|.|.+.|+.|+++++- |++.+ .++|.+-....|... .+. ....+.+..|.. +. .++
T Consensus 102 ~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~~----p~~-------------~~~~l~~~vG~~--~a~~~l 160 (239)
T PLN02267 102 TGHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIGLPL----PDY-------------FMALLRAKIGSP--AARRDV 160 (239)
T ss_pred CCcchHHHHHHHHHCCE--EEecCCCCeEeccccccCCCC----ChH-------------HHHHHHHHcChH--HHHHHH
Confidence 99999999999999997 99985 467765554443320 110 011233344432 22 245
Q ss_pred hcCCccccHHHHHHcCCceEEecC
Q 035798 273 IRRPYHMDSRRAKEFGVIDKVLWR 296 (313)
Q Consensus 273 ~~rd~~lsA~EAleyGLID~Ii~~ 296 (313)
+-....|+|+||+++||||+|+..
T Consensus 161 lltG~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 161 LLRAAKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred HHcCCcCCHHHHHHCCCcceecCC
Confidence 556678999999999999999974
No 98
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=97.75 E-value=0.0012 Score=61.62 Aligned_cols=144 Identities=14% Similarity=0.083 Sum_probs=89.8
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc---------c-----h--HHHHHHHHHhcCCeEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME---------S-----E--GFAIYDTLMQMKCEVHT 192 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v---------~-----a--GlAIYDtm~~i~~~V~T 192 (313)
++.++.+.+.+.+..++ ++..+ .|.|.+-|..+..|--+... . . ...++..|..++.||.+
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 104 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGAR--ALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIA 104 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCce--EEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67888888888888776 33322 23333434332222111100 0 0 01245667788899999
Q ss_pred EEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 035798 193 VAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTK 271 (313)
Q Consensus 193 v~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~ 271 (313)
.+-|.|.+.|+-|+++++- |++.++++|.+-....|.. +.+. .- .+.+..| .....+
T Consensus 105 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~p~~g~-~~-----------------~l~~~vG--~~~a~~ 162 (262)
T PRK08140 105 AVNGVAAGAGANLALACDI--VLAARSASFIQAFVKIGLVPDSGG-TW-----------------FLPRLVG--MARALG 162 (262)
T ss_pred EECCeeehhHHHHHHhCCE--EEecCCCEEeccccccCCCCCccH-HH-----------------HHHHHhC--HHHHHH
Confidence 9999999999999999997 9999999987644333321 1100 10 1122222 223344
Q ss_pred hhcCCccccHHHHHHcCCceEEecCC
Q 035798 272 TIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 272 ~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
++-...-++|+||+++||||+|+...
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~ 188 (262)
T PRK08140 163 LALLGEKLSAEQAEQWGLIWRVVDDA 188 (262)
T ss_pred HHHcCCCcCHHHHHHcCCccEeeChH
Confidence 55556779999999999999999754
No 99
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=97.71 E-value=0.0011 Score=61.91 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=94.5
Q ss_pred EEEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccc--------h-H-H--H-H--HH
Q 035798 122 IVYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMES--------E-G-F--A-I--YD 181 (313)
Q Consensus 122 IIfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~--------a-G-l--A-I--YD 181 (313)
+|.|+-| ++.++.+.+...|..++.++..+ .|.|.+.|..+..|--+..+. . . . . + +.
T Consensus 17 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (263)
T PRK07799 17 IVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIR--SCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALL 94 (263)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHH
Confidence 3556554 78889999999888877543222 344445443332221111000 0 0 0 0 1 11
Q ss_pred HHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 035798 182 TLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAK 260 (313)
Q Consensus 182 tm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~ 260 (313)
.+..++.||.+.+-|.|.+.|+-|+++++- |++.++++|.+-....|.. +.+ .. ..+.+
T Consensus 95 ~~~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~r 154 (263)
T PRK07799 95 KGRRLTKPLIAAVEGPAIAGGTEILQGTDI--RVAGESAKFGISEAKWSLFPMGG-SA-----------------VRLVR 154 (263)
T ss_pred HHhcCCCCEEEEECCeEeccHHHHHHhCCE--EEecCCCEecCcccccCcCCCcc-HH-----------------HHHHH
Confidence 234667889999999999999999999997 9999999987655544321 100 00 11222
Q ss_pred HhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCCc
Q 035798 261 HTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 261 ~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~~ 298 (313)
..| .....+++-....|+|+||+++||||+|+...+
T Consensus 155 ~vG--~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 190 (263)
T PRK07799 155 QIP--YTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQ 190 (263)
T ss_pred HhC--HHHHHHHHHcCCCCCHHHHHHcCCccEecCcch
Confidence 333 234455566667899999999999999998653
No 100
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=97.71 E-value=0.00026 Score=67.73 Aligned_cols=144 Identities=19% Similarity=0.166 Sum_probs=101.5
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc----------chHHHHHHHHHhcCCeEEEEEcccc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME----------SEGFAIYDTLMQMKCEVHTVAVGAA 198 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v----------~aGlAIYDtm~~i~~~V~Tv~~G~A 198 (313)
++..+..++...+..++..+..+-|.|| --|+++-.|--+..+ ..-+.-++.+..++.||..-+-|.|
T Consensus 61 l~~~~m~eL~~A~~~~e~D~s~~viVlt--G~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~A 138 (290)
T KOG1680|consen 61 LCRATMLELAEAFKDFESDDSVGVIVLT--GSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFA 138 (290)
T ss_pred ccHHHHHHHHHHHHHhhccCcccEEEEE--cCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeecee
Confidence 6678888888889888876655545544 334444332111111 1124556777778899999889999
Q ss_pred hhHHHHHHhcCCCCcEeeecCceEEEeCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcC
Q 035798 199 IGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPS---SGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRR 275 (313)
Q Consensus 199 aS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~---~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~r 275 (313)
.+.|+-|.+.++- |+|.++|.|+.-++..|. +|. + . .+.+-.|+ .+-.+++-.
T Consensus 139 lgGG~ELalmCDi--rva~~~Akfg~~~~~~Gi~p~~GG-T-~------------------rl~r~vG~--s~Ale~~lt 194 (290)
T KOG1680|consen 139 LGGGLELALMCDI--RVAGEGAKFGFFEIRMGIIPSWGG-T-Q------------------RLPRIVGK--SRALEMILT 194 (290)
T ss_pred eccchhhhhhcce--EeccCCCeecccccccCCccCCCc-h-h------------------hHHHHhCh--HHHHHHHHh
Confidence 9999999999998 999999999998888664 231 1 1 11112333 234566777
Q ss_pred CccccHHHHHHcCCceEEecCCc
Q 035798 276 PYHMDSRRAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 276 d~~lsA~EAleyGLID~Ii~~~~ 298 (313)
.+.++|+||++.|||++|+...+
T Consensus 195 g~~~~AqeA~~~GlVn~Vvp~~~ 217 (290)
T KOG1680|consen 195 GRRLGAQEAKKIGLVNKVVPSGD 217 (290)
T ss_pred cCcccHHHHHhCCceeEeecchh
Confidence 88999999999999999998764
No 101
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=97.70 E-value=0.00046 Score=64.35 Aligned_cols=141 Identities=12% Similarity=0.098 Sum_probs=85.9
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCE-EEEEcCCCCCCCCCCCcccc---------------chHHHHHHHHHhcCCeEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPI-YLYINSTGTTRDDGESVGME---------------SEGFAIYDTLMQMKCEVHT 192 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I-~LyINSPGGsv~~~e~vg~v---------------~aGlAIYDtm~~i~~~V~T 192 (313)
++.++...+...|..++.+ .++ .|.|.+.|+.+..|--+..+ .....++..|..++.||.+
T Consensus 30 l~~~~~~el~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 106 (260)
T PRK07827 30 LSARLVAQLHDGLRAAAAD---PAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIA 106 (260)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 6778888888887766642 233 34446666544322211100 0112345566677899999
Q ss_pred EEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 035798 193 VAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTK 271 (313)
Q Consensus 193 v~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~ 271 (313)
.+-|.|.+.|+-|+++++- |++.++++|.+=....|.. |.+. .- ...+ + + .....+
T Consensus 107 av~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~-~~---------~l~~-l--------~--~~~a~~ 163 (260)
T PRK07827 107 AIDGHVRAGGFGLVGACDI--VVAGPESTFALTEARIGVAPAIIS-LT---------LLPR-L--------S--PRAAAR 163 (260)
T ss_pred EEcCeeecchhhHHHhCCE--EEEcCCCEEeCcccccCCCCCccc-ch---------hHHh-h--------h--HHHHHH
Confidence 9999999999999999997 9999999886644333321 1111 10 0000 0 1 001122
Q ss_pred hhcCCccccHHHHHHcCCceEEec
Q 035798 272 TIRRPYHMDSRRAKEFGVIDKVLW 295 (313)
Q Consensus 272 ~~~rd~~lsA~EAleyGLID~Ii~ 295 (313)
++-....++|+||+++||||+|.+
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~ 187 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD 187 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH
Confidence 333445689999999999999964
No 102
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=97.69 E-value=0.00041 Score=64.38 Aligned_cols=141 Identities=15% Similarity=0.127 Sum_probs=89.4
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCcccc------------chHHHHHHHHHhcCCeEEEEEc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGME------------SEGFAIYDTLMQMKCEVHTVAV 195 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v------------~aGlAIYDtm~~i~~~V~Tv~~ 195 (313)
++.++.+.+...|..++.+ +++. |.|.+.|..+..|--+..+ ......+..|..++.||...+-
T Consensus 27 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 103 (249)
T PRK05870 27 VTAEMSAQLRAAVAAAEAD---PDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVN 103 (249)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 6788888888888877643 2343 3344544333221111000 0112234456677889999999
Q ss_pred ccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhc
Q 035798 196 GAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIR 274 (313)
Q Consensus 196 G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~ 274 (313)
|.|.+.|+-|.++++- |++.++++|.+.....|.. +.+. . ..+.+..| ..+..+++-
T Consensus 104 G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~-~-----------------~~l~~~~G--~~~a~~l~l 161 (249)
T PRK05870 104 GAAVGAGLNLALAADV--RIAGPKALFDARFQKLGLHPGGGA-T-----------------WMLQRAVG--PQVARAALL 161 (249)
T ss_pred CEeEchhHHHHHhCCE--EEEcCCCEEeCcccccCcCCCCcc-e-----------------eeHHhhhC--HHHHHHHHH
Confidence 9999999999999997 9999999998766554432 1111 0 01222222 233344444
Q ss_pred CCccccHHHHHHcCCceEEe
Q 035798 275 RPYHMDSRRAKEFGVIDKVL 294 (313)
Q Consensus 275 rd~~lsA~EAleyGLID~Ii 294 (313)
....++|+||+++||||+|+
T Consensus 162 tg~~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 162 FGMRFDAEAAVRHGLALMVA 181 (249)
T ss_pred hCCccCHHHHHHcCCHHHHH
Confidence 55689999999999999998
No 103
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=97.68 E-value=0.00067 Score=63.33 Aligned_cols=140 Identities=18% Similarity=0.160 Sum_probs=90.8
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCcccc------ch-------HHHHHHHHHhcCCeEEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGME------SE-------GFAIYDTLMQMKCEVHTVA 194 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v------~a-------GlAIYDtm~~i~~~V~Tv~ 194 (313)
++.++.+.+...|..++ ++ ++. |.+.+.|+.+..|--+..+ .. ...++..|..++.||.+.+
T Consensus 30 l~~~~~~~l~~~l~~~~--d~--~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav 105 (260)
T PRK07659 30 LDEPMLKELLQALKEVA--ES--SAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAI 105 (260)
T ss_pred CCHHHHHHHHHHHHHhc--CC--CeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 77888888888887773 32 233 4455555444333222111 00 1123445566788999999
Q ss_pred cccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Q 035798 195 VGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTI 273 (313)
Q Consensus 195 ~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~ 273 (313)
-|.|.+.|+-|+++++- |++.++++|.+.....|.. +.+.. ..+.+..| .....+++
T Consensus 106 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~------------------~~L~~~vg--~~~a~~l~ 163 (260)
T PRK07659 106 HGPAAGLGLSIALTADY--VIADISAKLAMNFIGIGLIPDGGGH------------------FFLQKRVG--ENKAKQII 163 (260)
T ss_pred cCceecHHHHHHHhCCE--EEEcCCCEEcCchhhcCCCCCCchh------------------hhHHHhcC--HHHHHHHH
Confidence 99999999999999997 9999999987666544432 11110 11222333 34445566
Q ss_pred cCCccccHHHHHHcCCceEEe
Q 035798 274 RRPYHMDSRRAKEFGVIDKVL 294 (313)
Q Consensus 274 ~rd~~lsA~EAleyGLID~Ii 294 (313)
-....|+|+||+++||||+|+
T Consensus 164 ltg~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 164 WEGKKLSATEALDLGLIDEVI 184 (260)
T ss_pred HhCCccCHHHHHHcCChHHHh
Confidence 666789999999999999998
No 104
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.68 E-value=0.00061 Score=66.56 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=91.4
Q ss_pred CcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccc--h--HHHHHHHH---HhcCCeEEE
Q 035798 120 GRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMES--E--GFAIYDTL---MQMKCEVHT 192 (313)
Q Consensus 120 ~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~--a--GlAIYDtm---~~i~~~V~T 192 (313)
+|+-..+|-.+++-...... +..+-..- .-||.-+|+|||... |... . +-+|...+ ...+.|+.+
T Consensus 126 e~~~~~~G~~~p~g~rKa~R-lm~lA~~f-~lPIItlvDTpGA~~------G~~AE~~G~~~aiar~l~~~a~~~VP~Is 197 (322)
T CHL00198 126 ENVLRNFGMPSPGGYRKALR-LMKHANKF-GLPILTFIDTPGAWA------GVKAEKLGQGEAIAVNLREMFSFEVPIIC 197 (322)
T ss_pred hhhhhcCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCcCc------CHHHHHHhHHHHHHHHHHHHHcCCCCEEE
Confidence 33333456677776666555 33333222 579999999999874 2211 1 33555543 466799999
Q ss_pred EEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Q 035798 193 VAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKT 272 (313)
Q Consensus 193 v~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~ 272 (313)
+++|-++|.|++.++.++. ++|+++|.+.+-.|.+. ++ |.++.-. +.. .
T Consensus 198 VViGeggsGGAlal~~aD~--V~m~e~a~~sVisPEg~------a~---Il~~d~~-------------------~a~-~ 246 (322)
T CHL00198 198 TIIGEGGSGGALGIGIGDS--IMMLEYAVYTVATPEAC------AA---ILWKDSK-------------------KSL-D 246 (322)
T ss_pred EEeCcccHHHHHhhhcCCe--EEEeCCeEEEecCHHHH------HH---HHhcchh-------------------hHH-H
Confidence 9999999999998888887 99999999998887531 11 1111111 111 1
Q ss_pred hcCCccccHHHHHHcCCceEEecCC
Q 035798 273 IRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 273 ~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
..+-.-+||++-+++|+||+|+...
T Consensus 247 aA~~~~ita~dL~~~giiD~ii~Ep 271 (322)
T CHL00198 247 AAEALKITSEDLKVLGIIDEIIPEP 271 (322)
T ss_pred HHHHcCCCHHHHHhCCCCeEeccCC
Confidence 2223458999999999999999754
No 105
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=97.65 E-value=0.00088 Score=63.99 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=68.0
Q ss_pred HHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 035798 179 IYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 258 (313)
Q Consensus 179 IYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~ 258 (313)
++..|..++.||...+-|.|.+.|+-|+++++- |++.++++|.+ |.....|. ...- .+
T Consensus 119 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~--pe~~~gg~-~~~~-----------------~~ 176 (302)
T PRK08272 119 GFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGY--PPTRVWGV-PATG-----------------MW 176 (302)
T ss_pred HHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecC--cchhcccC-ChHH-----------------HH
Confidence 455667788999999999999999999999998 99999998754 33222221 1100 01
Q ss_pred HHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 259 AKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 259 A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
....| .....+++-....++|+||+++||||+|+...
T Consensus 177 ~~~vG--~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~ 213 (302)
T PRK08272 177 AYRLG--PQRAKRLLFTGDCITGAQAAEWGLAVEAVPPE 213 (302)
T ss_pred HHHhh--HHHHHHHHHcCCccCHHHHHHcCCCceecCHH
Confidence 11233 34445566667789999999999999999743
No 106
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=97.64 E-value=0.0016 Score=60.70 Aligned_cols=145 Identities=14% Similarity=0.055 Sum_probs=87.7
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccc---h-HH------HHHHHHHhcCCeEEEEEcccc
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMES---E-GF------AIYDTLMQMKCEVHTVAVGAA 198 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~---a-Gl------AIYDtm~~i~~~V~Tv~~G~A 198 (313)
++.++...+...|..++..+..+ .|.|.+.|..+..|--+..+. . .. ..+..+..++.||.+.+-|.|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr--~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a 104 (254)
T PRK08259 27 VDGPTAAALADAFRAFDADDAAS--VAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYA 104 (254)
T ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEE
Confidence 77888888888888776533222 233344443332221111000 0 00 011122345788999999999
Q ss_pred hhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCc
Q 035798 199 IGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPY 277 (313)
Q Consensus 199 aS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~ 277 (313)
.+.|.-|+++++- |++.++++|.+-....|.. +.+ .. ..+.+..| .....+++-...
T Consensus 105 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~~~iG--~~~a~~lll~g~ 162 (254)
T PRK08259 105 VAGGLELALWCDL--RVAEEDAVFGVFCRRWGVPLIDG-GT-----------------VRLPRLIG--HSRAMDLILTGR 162 (254)
T ss_pred EhHHHHHHHhCCE--EEecCCCEecCcccccCCCCCcc-HH-----------------HHHHHHhC--HHHHHHHHHcCC
Confidence 9999999999997 9999999886544333221 100 00 11222334 234455566667
Q ss_pred cccHHHHHHcCCceEEecCC
Q 035798 278 HMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 278 ~lsA~EAleyGLID~Ii~~~ 297 (313)
.|+|+||+++||||+|+...
T Consensus 163 ~~~a~eA~~~Glv~~vv~~~ 182 (254)
T PRK08259 163 PVDADEALAIGLANRVVPKG 182 (254)
T ss_pred ccCHHHHHHcCCCCEeeChh
Confidence 89999999999999999765
No 107
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.61 E-value=0.00078 Score=66.72 Aligned_cols=146 Identities=14% Similarity=0.045 Sum_probs=91.4
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCC-CCCCCCCccc---------------cchHHHHHHHHHhcCCeEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGT-TRDDGESVGM---------------ESEGFAIYDTLMQMKCEVH 191 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGG-sv~~~e~vg~---------------v~aGlAIYDtm~~i~~~V~ 191 (313)
++.++...+...+..++.+ ++|. |.|-+-|+ .+..|--+.. ......+++.|..++.||.
T Consensus 52 ls~~ml~eL~~al~~~~~D---~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVI 128 (360)
T TIGR03200 52 YTTDMVKAIILAFRRASSD---RDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVI 128 (360)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 7888999999988887753 2333 33333332 2211111100 0111245667778889999
Q ss_pred EEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 035798 192 TVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTK 271 (313)
Q Consensus 192 Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~ 271 (313)
..+-|.|.+.|.-|.++++- |++.++++|-+-....|....+-... .+.+..|. .....
T Consensus 129 AAVnG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlGl~P~~Ggt~-----------------rLprlvG~--~rA~~ 187 (360)
T TIGR03200 129 CRVNGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHGSAPIGGATD-----------------FLPLMIGC--EQAMV 187 (360)
T ss_pred EEECCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccCCCCCccHHH-----------------HHHHhhCH--HHHHH
Confidence 99999999999999999997 99999999887655544321001111 11112222 22223
Q ss_pred hhcCCccccHHHHHHcCCceEEecCCc
Q 035798 272 TIRRPYHMDSRRAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 272 ~~~rd~~lsA~EAleyGLID~Ii~~~~ 298 (313)
++-....++|+||+++||||+|+...+
T Consensus 188 llltGe~~sA~EA~~~GLVd~VVp~~~ 214 (360)
T TIGR03200 188 SGTLCEPWSAHKAKRLGIIMDVVPALK 214 (360)
T ss_pred HHHhCCcCcHHHHHHcCChheecCchh
Confidence 333345899999999999999987543
No 108
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=97.60 E-value=0.0015 Score=62.47 Aligned_cols=94 Identities=12% Similarity=-0.041 Sum_probs=70.0
Q ss_pred HHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 035798 179 IYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRL-PSSGLLPASDVLIRAKEAMVNRDTLVKL 257 (313)
Q Consensus 179 IYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~-g~~G~g~asDi~i~akel~~~r~~l~~i 257 (313)
.+..|..++.||...+-|.|.+.|.-|.++++- |++.++++|.+-.... |... .-. +
T Consensus 104 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~l~G~~~----~~~------~---------- 161 (298)
T PRK12478 104 KFMAIWRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSRMWGAYL----TGM------W---------- 161 (298)
T ss_pred HHHHHHhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccccccCCc----hhH------H----------
Confidence 455677788999999999999999999999998 9999999988755542 2221 000 0
Q ss_pred HHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 258 LAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 258 ~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
..+.| ..+..+++-....++|+||+++||||+|+...
T Consensus 162 -~~~vG--~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~ 198 (298)
T PRK12478 162 -LYRLS--LAKVKWHSLTGRPLTGVQAAEAELINEAVPFE 198 (298)
T ss_pred -HHHhh--HHHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 01123 34455666677899999999999999999754
No 109
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.59 E-value=0.00045 Score=73.43 Aligned_cols=136 Identities=18% Similarity=0.229 Sum_probs=85.6
Q ss_pred cCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCC-CCCccccchHHHHHHHHH---hcCCeEEEEEcccchhH
Q 035798 126 GMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDD-GESVGMESEGFAIYDTLM---QMKCEVHTVAVGAAIGM 201 (313)
Q Consensus 126 ~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~-~e~vg~v~aGlAIYDtm~---~i~~~V~Tv~~G~AaS~ 201 (313)
+|-.++.-...... ++.+-... .-||.-+|+|||..... -|..| .+-+|...+. ....|+.++++|-|+|.
T Consensus 220 fG~~~peGyRKAlR-lmkLAekf-gLPIVtLVDTpGA~pG~~AEe~G---q~~aIArnl~amasl~VP~ISVViGeggSG 294 (762)
T PLN03229 220 FGMPTPHGYRKALR-MMYYADHH-GFPIVTFIDTPGAYADLKSEELG---QGEAIAHNLRTMFGLKVPIVSIVIGEGGSG 294 (762)
T ss_pred CCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEECCCcCCCchhHHHh---HHHHHHHHHHHHhCCCCCEEEEEeCCcchH
Confidence 34444554444444 33333222 57999999999987521 11111 2345555444 55699999999999999
Q ss_pred HHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccH
Q 035798 202 ACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDS 281 (313)
Q Consensus 202 AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA 281 (313)
|++.++.|+. .+|.++|.+.+-.|.+. .. |.++.-.+ ..+ ...-.-+||
T Consensus 295 GAlA~g~aD~--VlMle~A~~sVisPEga-------As--ILwkd~~~----------------A~e----AAe~lkiTa 343 (762)
T PLN03229 295 GALAIGCANK--LLMLENAVFYVASPEAC-------AA--ILWKSAKA----------------APK----AAEKLRITA 343 (762)
T ss_pred HHHHhhcCCE--EEEecCCeEEecCHHHH-------HH--HHhcCccc----------------HHH----HHHHcCCCH
Confidence 9999999987 99999998877666421 11 11111111 111 222245789
Q ss_pred HHHHHcCCceEEecCC
Q 035798 282 RRAKEFGVIDKVLWRG 297 (313)
Q Consensus 282 ~EAleyGLID~Ii~~~ 297 (313)
++-+++|+||+||...
T Consensus 344 ~dL~~lGiiD~IIpEp 359 (762)
T PLN03229 344 QELCRLQIADGIIPEP 359 (762)
T ss_pred HHHHhCCCCeeeccCC
Confidence 9999999999999754
No 110
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=97.59 E-value=0.002 Score=59.97 Aligned_cols=145 Identities=14% Similarity=0.030 Sum_probs=88.4
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccc-------hHHHHHHHH-HhcCCeEEEEEcccchh
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMES-------EGFAIYDTL-MQMKCEVHTVAVGAAIG 200 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~-------aGlAIYDtm-~~i~~~V~Tv~~G~AaS 200 (313)
++.++.+.+.+.|..++.++..+ .|.|.+.|..+..|--+.... ....+...+ ..++.||...+-|.|.+
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 104 (254)
T PRK08252 27 VNAAVAQGLAAALDELDADPDLS--VGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALA 104 (254)
T ss_pred CCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEeh
Confidence 68888899998888776533222 233444443332221111000 000111111 24568888999999999
Q ss_pred HHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccc
Q 035798 201 MACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHM 279 (313)
Q Consensus 201 ~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~l 279 (313)
.|+-|+++++- |++.++++|.+-....|.. +.+ .. ..+.+..| ...-.+++-...-+
T Consensus 105 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g-~~-----------------~~l~~~vg--~~~a~~l~l~g~~~ 162 (254)
T PRK08252 105 GGFELALACDL--IVAARDAKFGLPEVKRGLVAAGG-GL-----------------LRLPRRIP--YHIAMELALTGDML 162 (254)
T ss_pred HHHHHHHhCCE--EEEeCCCEEeCchhhcCCCCCch-HH-----------------HHHHHHcC--HHHHHHHHHcCCcc
Confidence 99999999997 9999999886644433322 100 00 11233334 33445555566789
Q ss_pred cHHHHHHcCCceEEecCC
Q 035798 280 DSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 280 sA~EAleyGLID~Ii~~~ 297 (313)
+|+||+++||||+|+...
T Consensus 163 ~a~eA~~~Glv~~vv~~~ 180 (254)
T PRK08252 163 TAERAHELGLVNRLTEPG 180 (254)
T ss_pred CHHHHHHcCCcceecCcc
Confidence 999999999999999754
No 111
>PRK08788 enoyl-CoA hydratase; Validated
Probab=97.57 E-value=0.0014 Score=62.71 Aligned_cols=148 Identities=12% Similarity=0.095 Sum_probs=89.8
Q ss_pred cCHHHHHHHHHHHhhchhc--CCCCCEE-EEEcCC-CCCCCCCCCccccc--------h-----HHHHHHHHH------h
Q 035798 129 LVPAVTELVVAELMYLQWM--DPKAPIY-LYINST-GTTRDDGESVGMES--------E-----GFAIYDTLM------Q 185 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~--d~~k~I~-LyINSP-GGsv~~~e~vg~v~--------a-----GlAIYDtm~------~ 185 (313)
++.++.+.+.+.+..++.. +.+.+|. |.|.+. |+.+..|--+..+. + ...+++.+. .
T Consensus 40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (287)
T PRK08788 40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG 119 (287)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 6778888888888877640 0123454 444454 33332221111000 0 112344443 4
Q ss_pred cCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 035798 186 MKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNS 265 (313)
Q Consensus 186 i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s 265 (313)
++.||...+-|.|.+.|+-|.++++- |++.++++|.+-....|.. .+.. ....+.+..|.
T Consensus 120 ~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lGl~-----p~~g------------~~~~l~~~vG~- 179 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFNLF-----PGMG------------AYSFLARRVGP- 179 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhCcC-----CCch------------HHHHHHHHhhH-
Confidence 56788888999999999999999997 9999999876533333321 0100 01123334442
Q ss_pred HHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 266 EEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 266 ~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
....+++-....|+++||+++||||+|+...
T Consensus 180 -~~A~ellltG~~l~A~eA~~~GLV~~vv~~~ 210 (287)
T PRK08788 180 -KLAEELILSGKLYTAEELHDMGLVDVLVEDG 210 (287)
T ss_pred -HHHHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence 3445556666789999999999999999754
No 112
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.45 E-value=0.0024 Score=63.32 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=92.3
Q ss_pred EEEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEE-EEcCCCCCCCCCCCccccc--------------hHHHHHH
Q 035798 122 IVYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYL-YINSTGTTRDDGESVGMES--------------EGFAIYD 181 (313)
Q Consensus 122 IIfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~L-yINSPGGsv~~~e~vg~v~--------------aGlAIYD 181 (313)
+|.|+-| ++.++...+...|..++.+ ..|.+ .|.+.|+.+..|--+.... ....+..
T Consensus 23 ~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d---~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (379)
T PLN02874 23 VITLNRPRQLNVISLSVVSLLAEFLEQWEKD---DSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCY 99 (379)
T ss_pred EEEECCCccccCCCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 4667665 7888888888888877643 23443 3345443332211111000 0011223
Q ss_pred HHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 035798 182 TLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAK 260 (313)
Q Consensus 182 tm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~ 260 (313)
.|..++.||.+.+-|.|.+.|.-|.++++- |++.++++|.+=....|.. +.| ..- .+.+
T Consensus 100 ~i~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iGl~p~~g-~~~-----------------~L~r 159 (379)
T PLN02874 100 HIHTYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVGFHTDCG-FSY-----------------ILSR 159 (379)
T ss_pred HHHhCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccCcCCChh-HHH-----------------HHHh
Confidence 466778999999999999999999999997 9999999887655554432 111 110 0111
Q ss_pred HhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 261 HTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 261 ~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
..|. .-..++=....++++||+++||||+|+...
T Consensus 160 l~g~---~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~ 193 (379)
T PLN02874 160 LPGH---LGEYLALTGARLNGKEMVACGLATHFVPSE 193 (379)
T ss_pred hhHH---HHHHHHHcCCcccHHHHHHcCCccEEeCHH
Confidence 1110 011233345679999999999999999754
No 113
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=97.41 E-value=0.0033 Score=58.44 Aligned_cols=144 Identities=17% Similarity=0.145 Sum_probs=94.4
Q ss_pred ccCHHHHHHHHHHHhhchhcCCCCCEEEEE-cCCCCCCCCCCCcccc-------------chHHHHHHHHHhcCCeEEEE
Q 035798 128 PLVPAVTELVVAELMYLQWMDPKAPIYLYI-NSTGTTRDDGESVGME-------------SEGFAIYDTLMQMKCEVHTV 193 (313)
Q Consensus 128 ~Id~~~a~~iiaqLl~L~~~d~~k~I~LyI-NSPGGsv~~~e~vg~v-------------~aGlAIYDtm~~i~~~V~Tv 193 (313)
-++.++...+.+.|..++.. +.|...| -+.|..+..|--++.+ .....+...|..++.||...
T Consensus 28 al~~~~~~~l~~al~~~~~d---~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 104 (257)
T COG1024 28 ALNLEMLDELAEALDEAEAD---PDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAA 104 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEE
Confidence 47788888888888877754 3343333 3333323222222211 11122566788888999999
Q ss_pred EcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Q 035798 194 AVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKT 272 (313)
Q Consensus 194 ~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~ 272 (313)
+-|.|.+.|+-|+++++- |++.++++|.+.....|.. |.| .+. .+.+..|. ..-.++
T Consensus 105 v~G~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iGl~Pg~g-~~~-----------------~l~r~~G~--~~a~~l 162 (257)
T COG1024 105 VNGYALGGGLELALACDI--RIAAEDAKFGLPEVNLGLLPGDG-GTQ-----------------RLPRLLGR--GRAKEL 162 (257)
T ss_pred EcceEeechhhhhhcCCe--EEecCCcEecCcccccccCCCCc-HHH-----------------HHHHhcCH--HHHHHH
Confidence 999999999999999998 9999999999888765532 111 111 12222221 122224
Q ss_pred hcCCccccHHHHHHcCCceEEecC
Q 035798 273 IRRPYHMDSRRAKEFGVIDKVLWR 296 (313)
Q Consensus 273 ~~rd~~lsA~EAleyGLID~Ii~~ 296 (313)
+--...++++||+++||||+|+..
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv~~ 186 (257)
T COG1024 163 LLTGEPISAAEALELGLVDEVVPD 186 (257)
T ss_pred HHcCCcCCHHHHHHcCCcCeeeCC
Confidence 555678999999999999999875
No 114
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.39 E-value=0.0034 Score=58.96 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=84.8
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCC-CCCCccccchHHH---HHHHHHhcCCeEEEEEcccchhHHHH
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRD-DGESVGMESEGFA---IYDTLMQMKCEVHTVAVGAAIGMACL 204 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~-~~e~vg~v~aGlA---IYDtm~~i~~~V~Tv~~G~AaS~Aal 204 (313)
++-.-+.+...-+...-..+..-||...+++||=... .-|.-|...++-. -|..+...+.|+.++++|.+.|.|.+
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 5545555555544443112346899999999996531 1121122222222 23333344599999999999998888
Q ss_pred HHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhc--CCccccHH
Q 035798 205 LLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIR--RPYHMDSR 282 (313)
Q Consensus 205 LLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~--rd~~lsA~ 282 (313)
-+..+. ...+++|++.+..=.|.+ +. +.+.++.++..+..+ ..+-.+++
T Consensus 125 amg~~a-d~v~Alp~A~i~vm~~e~-------aa---------------------~I~~~~~~~~~e~a~~~~~~a~~~~ 175 (238)
T TIGR03134 125 AHGLQA-DRIIALPGAMVHVMDLES-------MA---------------------RVTKRSVEELEALAKSSPVFAPGIE 175 (238)
T ss_pred HHccCc-CeEEEcCCcEEEecCHHH-------HH---------------------HHHccCHhHHHHHHHhhhhhccCHH
Confidence 775422 349999999876554421 11 111133334443332 24567888
Q ss_pred HHHHcCCceEEecCCc
Q 035798 283 RAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 283 EAleyGLID~Ii~~~~ 298 (313)
.+.+.|+||+|++...
T Consensus 176 ~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 176 NFVKLGGVHALLDVAD 191 (238)
T ss_pred HHHhCCCccEEeCCCC
Confidence 9999999999999654
No 115
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.29 E-value=0.0046 Score=65.89 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=89.5
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE--EEEcCCCCCCCCCCCcccc-------------chHHHHHHHHHhcCCeEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY--LYINSTGTTRDDGESVGME-------------SEGFAIYDTLMQMKCEVHTV 193 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~--LyINSPGGsv~~~e~vg~v-------------~aGlAIYDtm~~i~~~V~Tv 193 (313)
++.++...+...|..++.+ .++. |.+...|+.+..|--+..+ .....++..|..++.||.+.
T Consensus 26 l~~~~~~eL~~~l~~~~~d---~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 102 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRD---KSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAA 102 (699)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 6788888888888777643 3443 2233333332221111110 11234667788888999999
Q ss_pred EcccchhHHHHHHhcCCCCcEeeecCceEEEeCCC--CCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 035798 194 AVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPR--LPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVT 270 (313)
Q Consensus 194 ~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~--~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~ 270 (313)
+-|.|.+.|+-|.++++- |++.++++..+..|. .|.. |.| .. ..+.+..|. ..-.
T Consensus 103 VnG~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~lGl~p~~g-~~-----------------~~L~r~vG~--~~A~ 160 (699)
T TIGR02440 103 IHGACLGGGLELALACHS--RVCSDDDKTVLGLPEVQLGLLPGSG-GT-----------------QRLPRLIGV--STAL 160 (699)
T ss_pred ECCEeecHHHHHHHhCCE--EEEcCCCCcEEechhhcccCCCCcc-HH-----------------HHHHHhcCH--HHHH
Confidence 999999999999999997 999987544444443 3321 111 11 111222222 2334
Q ss_pred HhhcCCccccHHHHHHcCCceEEecCC
Q 035798 271 KTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 271 ~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+++-....++|+||+++||||+|+...
T Consensus 161 ~llltG~~~~a~eA~~~GLV~~vv~~~ 187 (699)
T TIGR02440 161 DMILTGKQLRAKQALKLGLVDDVVPQS 187 (699)
T ss_pred HHHHcCCcCCHHHHHhCCCCcEecChh
Confidence 555566789999999999999999764
No 116
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=97.25 E-value=0.0029 Score=61.86 Aligned_cols=149 Identities=13% Similarity=0.128 Sum_probs=92.3
Q ss_pred EEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCC-CCCCCCCCcccc---------c-------hHHHH
Q 035798 123 VYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTG-TTRDDGESVGME---------S-------EGFAI 179 (313)
Q Consensus 123 IfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPG-Gsv~~~e~vg~v---------~-------aGlAI 179 (313)
|.|+-| ++.++.+.+...+..++.+ .+|. |.|.+.| +.+..|--+..+ . ....+
T Consensus 16 itLnrP~~~Nal~~~m~~~L~~~l~~~~~d---~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (342)
T PRK05617 16 ITLNRPKALNALSLEMIRAIDAALDAWEDD---DAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRL 92 (342)
T ss_pred EEECCCccccCCCHHHHHHHHHHHHHHhhC---CCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHH
Confidence 455544 7788888888888777642 3443 4445555 232222111100 0 01124
Q ss_pred HHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 035798 180 YDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLL 258 (313)
Q Consensus 180 YDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~ 258 (313)
+..|..++.||...+-|.|.+.|+-|.++++- |++.++++|.+=....|.. +.|. +. .+
T Consensus 93 ~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~P~~g~-~~-----------------~L 152 (342)
T PRK05617 93 NALIARYPKPYIALMDGIVMGGGVGISAHGSH--RIVTERTKMAMPETGIGFFPDVGG-TY-----------------FL 152 (342)
T ss_pred HHHHHhCCCCEEEEEcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccccCcCCCccc-ee-----------------Ee
Confidence 45677778999999999999999999999997 9999999987755544432 1111 00 01
Q ss_pred HHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 259 AKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 259 A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.+..| ..-.+++-....++|+||+++||||+|+...
T Consensus 153 ~r~~g---~~a~~llltG~~i~A~eA~~~GLv~~vv~~~ 188 (342)
T PRK05617 153 SRAPG---ALGTYLALTGARISAADALYAGLADHFVPSA 188 (342)
T ss_pred hhccc---HHHHHHHHcCCCCCHHHHHHcCCcceecCHH
Confidence 11111 1122333345679999999999999999864
No 117
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.25 E-value=0.008 Score=64.23 Aligned_cols=144 Identities=19% Similarity=0.167 Sum_probs=93.1
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCE-EEEEcCCCCCCCCCCCccccc---------------hHHHHHHHHHhcCCeEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPI-YLYINSTGTTRDDGESVGMES---------------EGFAIYDTLMQMKCEVHT 192 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I-~LyINSPGGsv~~~e~vg~v~---------------aGlAIYDtm~~i~~~V~T 192 (313)
++.++.+.+.+.+..++.+ .++ .+.|.+.|..+..|--+.... ....+++.|..++.||..
T Consensus 31 l~~~~~~~L~~al~~~~~d---~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA 107 (715)
T PRK11730 31 LDRATLASLGEALDALEAQ---SDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVA 107 (715)
T ss_pred CCHHHHHHHHHHHHHHhcC---CCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 6788888888888777643 233 344455554443322121100 112345567778899999
Q ss_pred EEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q 035798 193 VAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTK 271 (313)
Q Consensus 193 v~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~ 271 (313)
.+-|.|.+.|.-|.++++- |++.++++|.+-....|.. +.|- . ..+.+..| .....+
T Consensus 108 av~G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lGl~p~~g~-~-----------------~~L~rlvG--~~~A~~ 165 (715)
T PRK11730 108 AINGYALGGGCECVLATDY--RVASPDARIGLPETKLGIMPGFGG-T-----------------VRLPRLIG--ADNALE 165 (715)
T ss_pred EECCEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcCCCCCchH-H-----------------HHHHHhcC--HHHHHH
Confidence 9999999999999999997 9999999887755544422 1111 0 01122233 223345
Q ss_pred hhcCCccccHHHHHHcCCceEEecCC
Q 035798 272 TIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 272 ~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
++-....++|+||+++||||+|+...
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~ 191 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPE 191 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHH
Confidence 55566789999999999999999754
No 118
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.24 E-value=0.007 Score=60.76 Aligned_cols=149 Identities=10% Similarity=0.012 Sum_probs=92.8
Q ss_pred EEEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcC------CCCCCCCCCCc-----cccc-------hHHH
Q 035798 122 IVYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYLYINS------TGTTRDDGESV-----GMES-------EGFA 178 (313)
Q Consensus 122 IIfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINS------PGGsv~~~e~v-----g~v~-------aGlA 178 (313)
+|.|+-| ++.++...+...|..++..+..+ .|.|.+ -||++.. .. +... ....
T Consensus 49 ~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vr--vVVl~G~GkaFcAGgDl~~--l~~~~~~~~~~~~~~~~~~~~~ 124 (401)
T PLN02157 49 TAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIG--FVMMKGSGRAFCAGGDIVS--LYHLRKRGSPDAIREFFSSLYS 124 (401)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCe--EEEEECCCCCccCCcCHHH--HHhhccccchHHHHHHHHHHHH
Confidence 5566665 78899999999888776533222 233443 3444310 00 0000 0011
Q ss_pred HHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHH
Q 035798 179 IYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKL 257 (313)
Q Consensus 179 IYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i 257 (313)
++..|..++.||...+-|.|.+.|.-|.++|+- |++.++++|.+=....|.. +.| .+- .
T Consensus 125 l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iGl~Pd~G-~s~-----------------~ 184 (401)
T PLN02157 125 FIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIGFHPDAG-ASF-----------------N 184 (401)
T ss_pred HHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcCCCCCcc-HHH-----------------H
Confidence 234467778999999999999999999999997 9999999887655544432 111 111 1
Q ss_pred HHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 258 LAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 258 ~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+.+..|. .-..++-....|+|+||+++||||+|+...
T Consensus 185 L~rl~G~---~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~ 221 (401)
T PLN02157 185 LSHLPGR---LGEYLGLTGLKLSGAEMLACGLATHYIRSE 221 (401)
T ss_pred HHHhhhH---HHHHHHHcCCcCCHHHHHHcCCceEEeCHh
Confidence 1112221 112333456789999999999999999765
No 119
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.23 E-value=0.0086 Score=64.05 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=96.5
Q ss_pred EEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccc---------------cchHHHHHHH
Q 035798 123 VYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGM---------------ESEGFAIYDT 182 (313)
Q Consensus 123 IfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~---------------v~aGlAIYDt 182 (313)
|.|+-| ++.++...+...|..++.++..+ .+.|.|-|..+..|--+.. ...+..+++.
T Consensus 20 Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (714)
T TIGR02437 20 LKFDAPGSVNKFDRATLASLDQALDAIKAQSSLK--GVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNK 97 (714)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHH
Confidence 455544 67888889998888776533222 3444454443322211110 0123356777
Q ss_pred HHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035798 183 LMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKH 261 (313)
Q Consensus 183 m~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~ 261 (313)
|..++.||...+-|.|.+.|.-|.++++- |++.++++|.+=....|.. |.| .. .+ +.+.
T Consensus 98 i~~~pkPvIAai~G~alGGGleLalacD~--ria~~~a~fglPEv~lGl~Pg~G-gt---------~r--------L~rl 157 (714)
T TIGR02437 98 LEDLPVPTVAAINGIALGGGCECVLATDF--RIADDTAKIGLPETKLGIMPGFG-GT---------VR--------LPRV 157 (714)
T ss_pred HHhCCCCEEEEECCeeecHHHHHHHhCCE--EEEeCCCEEecchhhcCCCCCcc-HH---------HH--------HHHH
Confidence 88888999999999999999999999997 9999999988755544432 211 11 01 1112
Q ss_pred hCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 262 TGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 262 TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.|.. .-.+++-....++|+||+++||||+|+...
T Consensus 158 iG~~--~A~~llltG~~~~A~eA~~~GLvd~vv~~~ 191 (714)
T TIGR02437 158 IGAD--NALEWIASGKENRAEDALKVGAVDAVVTAD 191 (714)
T ss_pred hCHH--HHHHHHHcCCcCCHHHHHHCCCCcEeeChh
Confidence 2322 223444456679999999999999998753
No 120
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.21 E-value=0.0097 Score=59.92 Aligned_cols=154 Identities=10% Similarity=0.014 Sum_probs=94.6
Q ss_pred CcEEEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCcccc---------chHH----HHH-
Q 035798 120 GRIVYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGME---------SEGF----AIY- 180 (313)
Q Consensus 120 ~RIIfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v---------~aGl----AIY- 180 (313)
-++|.|+-| ++.++...+...|..++.++..+ .|.|.+.|..+..|--|-.+ .... ..|
T Consensus 52 ~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vr--vVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~ 129 (407)
T PLN02851 52 SRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIG--FVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYK 129 (407)
T ss_pred EEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHH
Confidence 357788877 88899999999998887543222 23334444332211111000 0111 123
Q ss_pred --HHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHH
Q 035798 181 --DTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKL 257 (313)
Q Consensus 181 --Dtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i 257 (313)
..|..++.||...+-|.|.+.|.-|.++|+- |++.++++|.+=....|.. +.| .+- -+-+
T Consensus 130 l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iGl~PdvG-~s~------~L~r-------- 192 (407)
T PLN02851 130 FVYLQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMGFHPDAG-ASY------YLSR-------- 192 (407)
T ss_pred HHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccCCCCCcc-HHH------HHHH--------
Confidence 2445668999999999999999999999987 9999998887765554432 101 111 0111
Q ss_pred HHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCCc
Q 035798 258 LAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 258 ~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~~ 298 (313)
..|.. -..++-....|+++||+++||+|+++...+
T Consensus 193 ---l~g~~---g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~ 227 (407)
T PLN02851 193 ---LPGYL---GEYLALTGQKLNGVEMIACGLATHYCLNAR 227 (407)
T ss_pred ---hcCHH---HHHHHHhCCcCCHHHHHHCCCceeecCHhh
Confidence 11110 012333456899999999999999998663
No 121
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.11 E-value=0.015 Score=62.18 Aligned_cols=144 Identities=18% Similarity=0.165 Sum_probs=91.7
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCC-CCCCCCCcccc-------------chHHHHHHHHHhcCCeEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGT-TRDDGESVGME-------------SEGFAIYDTLMQMKCEVHTV 193 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGG-sv~~~e~vg~v-------------~aGlAIYDtm~~i~~~V~Tv 193 (313)
++.++...+...|..++.+ +++. +.|-+.|| .+..|--+..+ .....+++.|..++.||...
T Consensus 31 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa 107 (708)
T PRK11154 31 LKAEFAEQVRAILKQLRED---KELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAA 107 (708)
T ss_pred CCHHHHHHHHHHHHHHHhC---CCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 6778888888888777642 3444 33344332 33222111100 01123667788888999999
Q ss_pred EcccchhHHHHHHhcCCCCcEeeecCc--eEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 035798 194 AVGAAIGMACLLLAAGTKGKRFMMPHA--KIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVT 270 (313)
Q Consensus 194 ~~G~AaS~AalLLaAG~kGkR~alPnS--~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~ 270 (313)
+-|.|.+.|.-|.++++- |++.+++ +|.+.....|.. |.|- . ..+.+..|. ....
T Consensus 108 V~G~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lGl~p~~gg-~-----------------~~L~r~vG~--~~A~ 165 (708)
T PRK11154 108 IHGACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLGLLPGSGG-T-----------------QRLPRLIGV--STAL 165 (708)
T ss_pred ECCeeechHHHHHHhCCE--EEEeCCCCceEeCccccCCCCCCccH-H-----------------hHHHhhcCH--HHHH
Confidence 999999999999999997 9999986 555544443321 1111 0 122223332 3334
Q ss_pred HhhcCCccccHHHHHHcCCceEEecCC
Q 035798 271 KTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 271 ~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+++-....++|+||+++||||+|+...
T Consensus 166 ~llltG~~i~a~eA~~~GLv~~vv~~~ 192 (708)
T PRK11154 166 DMILTGKQLRAKQALKLGLVDDVVPHS 192 (708)
T ss_pred HHHHhCCcCCHHHHHHCCCCcEecChH
Confidence 566667789999999999999999754
No 122
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.09 E-value=0.01 Score=61.87 Aligned_cols=147 Identities=12% Similarity=0.046 Sum_probs=94.7
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCC--CCCCCCc------cc--cchH----HHHHHHHHhcCCeEEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTT--RDDGESV------GM--ESEG----FAIYDTLMQMKCEVHTVA 194 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGs--v~~~e~v------g~--v~aG----lAIYDtm~~i~~~V~Tv~ 194 (313)
++.++...+...+..++..| .+|.+.|=+-+|. +..|--+ +. +.+. ..++..|..++.||...+
T Consensus 295 l~~~~~~~L~~a~~~~~~~d--~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNE--LDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCC--CCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 67788888888888876432 4566555333442 2111111 10 0111 125667778889999999
Q ss_pred -cccchhHH-HHHHhcCCCCcEee-------ecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-C
Q 035798 195 -VGAAIGMA-CLLLAAGTKGKRFM-------MPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHT-G 263 (313)
Q Consensus 195 -~G~AaS~A-alLLaAG~kGkR~a-------lPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~T-G 263 (313)
-|.|.+.| .=|.++++- |++ .++++|.+-....|.. +.+-. ..+.+.. |
T Consensus 373 ~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~------------------~~L~~~v~G 432 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGLYPMVNGL------------------SRLATRFYA 432 (546)
T ss_pred CCCeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCccccccCCCcCcH------------------HHHHHHhcC
Confidence 79999999 999999998 999 8999987766655532 11111 1234444 5
Q ss_pred CCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 264 NSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 264 ~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.+...-.+++-....++|+||+++|||++|+...
T Consensus 433 ~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~ 466 (546)
T TIGR03222 433 EPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDI 466 (546)
T ss_pred chhHHHHHHHHhCCCCCHHHHHHcCCcccccCch
Confidence 4443332333355779999999999999998754
No 123
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.06 E-value=0.0063 Score=63.34 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=84.3
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEE-EcCCCC-CCCCCCCccccc------------hH----HHHHHHHHhcCCeE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLY-INSTGT-TRDDGESVGMES------------EG----FAIYDTLMQMKCEV 190 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~Ly-INSPGG-sv~~~e~vg~v~------------aG----lAIYDtm~~i~~~V 190 (313)
++.++.+.+.+.|..++..+ +.|.+. |-+-|| .+..|--+.... .. ..+++.|+.++.||
T Consensus 45 l~~~~l~eL~~al~~~~~~d--~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPv 122 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEH--PEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKF 122 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcC--CCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCE
Confidence 57788888888888776222 334433 322222 221111110000 00 13555667788999
Q ss_pred EEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 035798 191 HTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVT 270 (313)
Q Consensus 191 ~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~ 270 (313)
...+-|.|.+.|.-|.++++- |++.+++...+..|.....|. ..+..- +. .+............
T Consensus 123 IAAVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~pEv~~lGl--~P~~gg----~~--------~l~~~~~vg~~~A~ 186 (546)
T TIGR03222 123 LAAVNGTCAGGGYELALACDE--IMLVDDRSSSVSLPEVPLLGV--LPGTGG----LT--------RVTDKRRVRRDHAD 186 (546)
T ss_pred EEEECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhccCc--CCccch----hh--------hccccchhCHHHHH
Confidence 999999999999999999997 999987433333344321111 000000 00 01100011222233
Q ss_pred HhhcCCccccHHHHHHcCCceEEecCC
Q 035798 271 KTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 271 ~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+++-...-++++||+++||||+|+...
T Consensus 187 ~llltG~~i~A~eA~~~GLV~~vv~~~ 213 (546)
T TIGR03222 187 IFCTIEEGVRGKRAKEWRLVDEVVKPS 213 (546)
T ss_pred HHHHcCCCccHHHHHHcCCceEEeChH
Confidence 333345579999999999999999754
No 124
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.05 E-value=0.0058 Score=63.65 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=65.8
Q ss_pred HHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecC--ceEEEeCCC-CCCC-CCCCHHHHHHHHHHHHHHHHHH
Q 035798 179 IYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPH--AKIMIQQPR-LPSS-GLLPASDVLIRAKEAMVNRDTL 254 (313)
Q Consensus 179 IYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPn--S~iMIHqP~-~g~~-G~g~asDi~i~akel~~~r~~l 254 (313)
+.+.|..++.||...+-|.|.+.|+.|.++++- |++.++ ++|.+-... .|.. +.+. .
T Consensus 115 l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~--rIas~~~~a~fg~pEv~~~Gl~P~~gg---~-------------- 175 (550)
T PRK08184 115 IEDSSRHSGLKFIAAVNGTCAGGGYELALACDE--IVLVDDRSSAVSLPEVPLLGVLPGTGG---L-------------- 175 (550)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhccccCCCcch---H--------------
Confidence 455667788999999999999999999999997 999987 555442221 2211 1111 0
Q ss_pred HHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 255 VKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 255 ~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
..+............+++-....|+++||+++||||+|+.+.
T Consensus 176 -~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d 217 (550)
T PRK08184 176 -TRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPS 217 (550)
T ss_pred -HHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHH
Confidence 011111122333344444456689999999999999999754
No 125
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.03 E-value=0.011 Score=58.80 Aligned_cols=150 Identities=11% Similarity=0.073 Sum_probs=90.6
Q ss_pred EEEEcCc-----cCHHHHHHHHHHHhhchhcCCCCCEE-EEEcCCCCCCCCCCCccccc----------------hHHHH
Q 035798 122 IVYIGMP-----LVPAVTELVVAELMYLQWMDPKAPIY-LYINSTGTTRDDGESVGMES----------------EGFAI 179 (313)
Q Consensus 122 IIfL~g~-----Id~~~a~~iiaqLl~L~~~d~~k~I~-LyINSPGGsv~~~e~vg~v~----------------aGlAI 179 (313)
+|.|+-| ++.++...+...|..++..+ .|. |.|.+.|..+..|--+..+. .....
T Consensus 21 ~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~---~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l 97 (381)
T PLN02988 21 ILTLNRPKQLNALSFHMISRLLQLFLAFEEDP---SVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYML 97 (381)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCC---CeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHH
Confidence 4666655 77889999999998876532 332 34444442222111111110 00112
Q ss_pred HHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 035798 180 YDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLL 258 (313)
Q Consensus 180 YDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~ 258 (313)
...|..++.||.+.+-|.|.+.|.-|.++|+- |++.++++|.+=....|.. +.| .+- -+-+ +....
T Consensus 98 ~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iGl~Pd~G-~s~------~L~r----l~G~~ 164 (381)
T PLN02988 98 NYVMATYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETALGLFPDVG-ASY------FLSR----LPGFF 164 (381)
T ss_pred HHHHHHCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcCcCCCcc-HHH------HHHH----HHHHH
Confidence 23566778999999999999999999999987 9999999876544433321 101 111 0111 11111
Q ss_pred HHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 259 AKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 259 A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
+ ..++-....++++||++.||+|+++...
T Consensus 165 ~----------~~l~LTG~~i~a~eA~~~GLv~~vv~~~ 193 (381)
T PLN02988 165 G----------EYVGLTGARLDGAEMLACGLATHFVPST 193 (381)
T ss_pred H----------HHHHHcCCCCCHHHHHHcCCceEecCHh
Confidence 1 1233345689999999999999999764
No 126
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.84 E-value=0.016 Score=62.35 Aligned_cols=143 Identities=17% Similarity=0.155 Sum_probs=92.2
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEE--EEEcCCCCCCCCCCCcccc-------------chHHHHHHHHHhcCCeEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIY--LYINSTGTTRDDGESVGME-------------SEGFAIYDTLMQMKCEVHTV 193 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~--LyINSPGGsv~~~e~vg~v-------------~aGlAIYDtm~~i~~~V~Tv 193 (313)
++.++...+.+.|..++.+ .+|. |.+.+.|+.+..|--+... ..+..+++.|..++.||...
T Consensus 38 l~~~~~~~L~~al~~~~~d---~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAa 114 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWTN---EAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAA 114 (737)
T ss_pred CCHHHHHHHHHHHHHHhhC---CCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5678888888888777642 3454 3446666554332211110 11234667788888999999
Q ss_pred EcccchhHHHHHHhcCCCCcEeeecCc--eEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 035798 194 AVGAAIGMACLLLAAGTKGKRFMMPHA--KIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVT 270 (313)
Q Consensus 194 ~~G~AaS~AalLLaAG~kGkR~alPnS--~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~ 270 (313)
+-|.|.+.|.-|.++++- |++.+++ +|.+.....|.. |.|-. ..+.+..|. ..-.
T Consensus 115 v~G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~lGl~Pg~Ggt------------------~rLprliG~--~~A~ 172 (737)
T TIGR02441 115 ISGSCLGGGLELALACHY--RIATKDRKTLLGLPEVMLGLLPGAGGT------------------QRLPKLTGV--PAAL 172 (737)
T ss_pred ECCEeecHHHHHHHhCCE--EEEcCCCCCeEecchhhhCCCCCccHh------------------hhHHHhhCH--HHHH
Confidence 999999999999999997 9999986 455444333321 21111 112222332 2233
Q ss_pred HhhcCCccccHHHHHHcCCceEEecC
Q 035798 271 KTIRRPYHMDSRRAKEFGVIDKVLWR 296 (313)
Q Consensus 271 ~~~~rd~~lsA~EAleyGLID~Ii~~ 296 (313)
+++-....++|+||+++||||+|+..
T Consensus 173 ~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 173 DMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred HHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 45556778999999999999999975
No 127
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.65 E-value=0.0077 Score=62.19 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=92.3
Q ss_pred EcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCC-CCCCccccchHHHHHHHHHhcCCeEEEEEcccchhHHH
Q 035798 125 IGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRD-DGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMAC 203 (313)
Q Consensus 125 L~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~-~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~Aa 203 (313)
++|.++...++.+..-+-..+. -.-||...+||||-... .-|.-|.+..+-.+++.+.....|..++++|.++|.|.
T Consensus 327 ~~G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~ 404 (512)
T TIGR01117 327 MAGCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAY 404 (512)
T ss_pred ccCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHH
Confidence 4578888888887774443333 25799999999995320 01111223455566667777789999999999999876
Q ss_pred HHHhcC--CCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccH
Q 035798 204 LLLAAG--TKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDS 281 (313)
Q Consensus 204 lLLaAG--~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA 281 (313)
+-+++. .....++.|++++.+=.|.+ +..+. +.+++.+..+. ++ .-.+++.+.. +.+.++
T Consensus 405 ~am~~~~~~~d~~~a~p~a~~~v~~pe~-------a~~i~-~~~~l~~~~~~-----~~---~~~~~~~~~~--~~~~~~ 466 (512)
T TIGR01117 405 LAMCSKHLGADQVYAWPTAEIAVMGPAG-------AANII-FRKDIKEAKDP-----AA---TRKQKIAEYR--EEFANP 466 (512)
T ss_pred HHhccccCCCCEEEEcCCCeEeecCHHH-------HHHHH-hhhhcccccCH-----HH---HHHHHHHHHH--HhhcCH
Confidence 665431 12248888999887776653 12211 11222111000 00 0011222222 236689
Q ss_pred HHHHHcCCceEEecCCc
Q 035798 282 RRAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 282 ~EAleyGLID~Ii~~~~ 298 (313)
..|.+.|+||.|+.+.+
T Consensus 467 ~~~a~~g~vD~VI~P~~ 483 (512)
T TIGR01117 467 YKAAARGYVDDVIEPKQ 483 (512)
T ss_pred HHHHhcCCCCeeEChHH
Confidence 99999999999999753
No 128
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.07 E-value=0.031 Score=58.62 Aligned_cols=160 Identities=16% Similarity=0.112 Sum_probs=90.8
Q ss_pred CccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCC-CCCCccccchHHHHHHHHHhcCCeEEEEEcccchhHHHHH
Q 035798 127 MPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRD-DGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLL 205 (313)
Q Consensus 127 g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~-~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~AalL 205 (313)
|.++.+.++.... ++.|-.. -.=||...+|+||-.+. .-|.=|.+..+-.+..++.....|+.|+.+|.+++.|.+-
T Consensus 380 g~l~~~~a~Kaar-fi~lc~~-~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a 457 (569)
T PLN02820 380 GILFTESALKGAH-FIELCAQ-RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG 457 (569)
T ss_pred CccCHHHHHHHHH-HHHHHHh-cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence 5577777666644 4433322 24689999999996531 0111133455566677777788999999999999998888
Q ss_pred HhcCC--CCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHH
Q 035798 206 LAAGT--KGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRR 283 (313)
Q Consensus 206 LaAG~--kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~E 283 (313)
+++.. ....++.|++++.+=.|. ++..+. +.+|+.+.++...+.-.+....-.+++.+..++ ..++..
T Consensus 458 M~g~~~~~d~~~awp~A~i~vmg~e-------~aa~il-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~ 527 (569)
T PLN02820 458 MCGRAYSPNFLFMWPNARIGVMGGA-------QAAGVL-AQIERENKKRQGIQWSKEEEEAFKAKTVEAYER--EANPYY 527 (569)
T ss_pred hcCcCCCCCEEEECCCCeEEecCHH-------HHHHHH-HHHHhhhhhhccccCCccHHHHHHHHHHHHHHH--hCCHHH
Confidence 76432 223566677766544332 122221 223332222211100000000001223222322 678999
Q ss_pred HHHcCCceEEecCCc
Q 035798 284 AKEFGVIDKVLWRGQ 298 (313)
Q Consensus 284 AleyGLID~Ii~~~~ 298 (313)
|-+.|+||.||++.+
T Consensus 528 aa~~~~vD~VIdP~d 542 (569)
T PLN02820 528 STARLWDDGVIDPAD 542 (569)
T ss_pred HHHcCCcCcccCHHH
Confidence 999999999999753
No 129
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=95.95 E-value=0.017 Score=55.95 Aligned_cols=113 Identities=22% Similarity=0.330 Sum_probs=77.8
Q ss_pred CCCEEEEEcCCCCCCCCCCCcccc--chHHHHHHHHH---hcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEE
Q 035798 150 KAPIYLYINSTGTTRDDGESVGME--SEGFAIYDTLM---QMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMI 224 (313)
Q Consensus 150 ~k~I~LyINSPGGsv~~~e~vg~v--~aGlAIYDtm~---~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMI 224 (313)
.-||..+|++||-... ||-+ -.+-+|--.+. .++.||.++++|.-.|.|++-++-|++ .+|+.||++.+
T Consensus 150 ~lPiitfIDT~GAypG----~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySV 223 (317)
T COG0825 150 GLPIITFIDTPGAYPG----IGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSV 223 (317)
T ss_pred CCCEEEEecCCCCCCC----cchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeee
Confidence 5799999999996531 0000 12455554444 557999999999999999999999997 99999999999
Q ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 225 QQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 225 HqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
-.|.+- ++=+ ++.-.+. .--|+.. -+||+.-+++||||.|+...
T Consensus 224 isPEG~------AsIL---WkD~~ka-----~eAAe~m---------------kita~dLk~lgiID~II~Ep 267 (317)
T COG0825 224 ISPEGC------ASIL---WKDASKA-----KEAAEAM---------------KITAHDLKELGIIDGIIPEP 267 (317)
T ss_pred cChhhh------hhhh---hcChhhh-----HHHHHHc---------------CCCHHHHHhCCCcceeccCC
Confidence 988642 2211 2221111 1112222 35788889999999999854
No 130
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=95.90 E-value=0.098 Score=50.47 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=85.9
Q ss_pred EEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHH---HHhcCCeEEEEEcccchh
Q 035798 124 YIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDT---LMQMKCEVHTVAVGAAIG 200 (313)
Q Consensus 124 fL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDt---m~~i~~~V~Tv~~G~AaS 200 (313)
|++|-+.....+.+..-+..... . .-|+.++.+|+|.-...|. ++...+-.++.. +.....|..++..|-+++
T Consensus 131 f~gGSmg~~~geKi~r~~e~A~~-~-~lPlV~l~dSgGaRmqEg~--~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~G 206 (285)
T TIGR00515 131 FMGGSMGSVVGEKFVRAIEKALE-D-NCPLIIFSASGGARMQEAL--LSLMQMAKTSAALAKMSERGLPYISVLTDPTTG 206 (285)
T ss_pred ccCCCccHHHHHHHHHHHHHHHH-c-CCCEEEEEcCCCcccccch--hHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcch
Confidence 56889999999998875554433 2 4689999999998643221 111111112222 233358999999999998
Q ss_pred HHHHHHh-cCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccc
Q 035798 201 MACLLLA-AGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHM 279 (313)
Q Consensus 201 ~AalLLa-AG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~l 279 (313)
.++..++ .|+- .++.|+|.+.+--|. ++.+.+|. ++. +-+-
T Consensus 207 G~aas~a~~~D~--iia~p~A~ig~aGpr----------------------------Vie~ti~e---~lp-----e~~q 248 (285)
T TIGR00515 207 GVSASFAMLGDL--NIAEPKALIGFAGPR----------------------------VIEQTVRE---KLP-----EGFQ 248 (285)
T ss_pred HHHHHHHhCCCE--EEEECCeEEEcCCHH----------------------------HHHHHhcC---ccc-----hhcC
Confidence 8877775 7776 889999888653321 11122331 222 3366
Q ss_pred cHHHHHHcCCceEEecCCc
Q 035798 280 DSRRAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 280 sA~EAleyGLID~Ii~~~~ 298 (313)
+|+-+.+.|+||.|+.+.+
T Consensus 249 ~ae~~~~~G~vD~iv~~~~ 267 (285)
T TIGR00515 249 TSEFLLEHGAIDMIVHRPE 267 (285)
T ss_pred CHHHHHhCCCCcEEECcHH
Confidence 7888889999999999764
No 131
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=95.82 E-value=0.13 Score=49.73 Aligned_cols=133 Identities=19% Similarity=0.200 Sum_probs=82.5
Q ss_pred EEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHH---HHhcCCeEEEEEcccchh
Q 035798 124 YIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDT---LMQMKCEVHTVAVGAAIG 200 (313)
Q Consensus 124 fL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDt---m~~i~~~V~Tv~~G~AaS 200 (313)
|++|-++...++.+..-+..-.. . .-|+.++..|+|.....|-. ....+-.++.. +.....|..++..|-+++
T Consensus 132 f~gGS~g~~~~eKi~r~~e~A~~-~-~lPlV~l~dsgGarmqEgi~--sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~G 207 (292)
T PRK05654 132 FMGGSMGSVVGEKIVRAVERAIE-E-KCPLVIFSASGGARMQEGLL--SLMQMAKTSAALKRLSEAGLPYISVLTDPTTG 207 (292)
T ss_pred cccCCccHHHHHHHHHHHHHHHH-c-CCCEEEEEcCCCcchhhhhh--HHHhHHHHHHHHHHHHcCCCCEEEEEeCCCch
Confidence 56899999999998875544333 3 46888888999876322110 00000012222 223358889999999998
Q ss_pred HHHHHHhc-CCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccc
Q 035798 201 MACLLLAA-GTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHM 279 (313)
Q Consensus 201 ~AalLLaA-G~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~l 279 (313)
.++..++. |+- .++.|+|.+.+--|. -+ .+-+| +++.+ -+-
T Consensus 208 G~aas~a~~~D~--iia~p~A~ig~aGpr----------vi------------------e~~~~---e~lpe-----~~~ 249 (292)
T PRK05654 208 GVSASFAMLGDI--IIAEPKALIGFAGPR----------VI------------------EQTVR---EKLPE-----GFQ 249 (292)
T ss_pred HHHHHHHHcCCE--EEEecCcEEEecCHH----------HH------------------Hhhhh---hhhhh-----hhc
Confidence 88777665 665 888898887664331 11 11111 11111 155
Q ss_pred cHHHHHHcCCceEEecCCc
Q 035798 280 DSRRAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 280 sA~EAleyGLID~Ii~~~~ 298 (313)
+|+-+.+.|+||.|+.+.+
T Consensus 250 ~ae~~~~~G~vD~Vv~~~e 268 (292)
T PRK05654 250 RAEFLLEHGAIDMIVHRRE 268 (292)
T ss_pred CHHHHHhCCCCcEEECHHH
Confidence 6777889999999999764
No 132
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=95.70 E-value=0.037 Score=57.76 Aligned_cols=147 Identities=13% Similarity=0.127 Sum_probs=87.1
Q ss_pred cCHHHHHHHHHHHhhchhcCCCCCEEEEE-cCCCC-CCCC-CC--Cccc-----cchH----HHHHHHHHhcCCeEEEEE
Q 035798 129 LVPAVTELVVAELMYLQWMDPKAPIYLYI-NSTGT-TRDD-GE--SVGM-----ESEG----FAIYDTLMQMKCEVHTVA 194 (313)
Q Consensus 129 Id~~~a~~iiaqLl~L~~~d~~k~I~LyI-NSPGG-sv~~-~e--~vg~-----v~aG----lAIYDtm~~i~~~V~Tv~ 194 (313)
++.++...+...+..++..| .+|...| -+-|+ .+.. ++ .... .... ..++..|..++.||...+
T Consensus 299 l~~~~~~eL~~al~~~~~~d--~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 376 (550)
T PRK08184 299 WPLQMARELDDAILHLRTNE--LDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALI 376 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcC--CCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67788888888777775422 3455443 34332 1211 11 0000 0011 124456667778988888
Q ss_pred c-ccchhHH-HHHHhcCCCCcEeee-------cCceEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hC
Q 035798 195 V-GAAIGMA-CLLLAAGTKGKRFMM-------PHAKIMIQQPRLPSS-GLLPASDVLIRAKEAMVNRDTLVKLLAKH-TG 263 (313)
Q Consensus 195 ~-G~AaS~A-alLLaAG~kGkR~al-------PnS~iMIHqP~~g~~-G~g~asDi~i~akel~~~r~~l~~i~A~~-TG 263 (313)
- |.|.+.| .-|.++++- |++. ++++|.+-....|.. +.|-.. .+.++ .|
T Consensus 377 ~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~------------------~L~r~~vG 436 (550)
T PRK08184 377 EPGSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFGLYPMVNGLS------------------RLARRFYG 436 (550)
T ss_pred CCCceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECccccccCCCCCCcHH------------------HhHHHhcC
Confidence 6 9999999 999999997 9999 999987766655432 111111 12222 23
Q ss_pred CCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 264 NSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 264 ~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.....-...+-....++|+||+++||||+|+...
T Consensus 437 ~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~ 470 (550)
T PRK08184 437 EPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDI 470 (550)
T ss_pred hHHHHHHHHHHhCCcCCHHHHHHcCCcccccChH
Confidence 3211111111245689999999999999999754
No 133
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=94.08 E-value=0.038 Score=56.68 Aligned_cols=156 Identities=18% Similarity=0.163 Sum_probs=87.3
Q ss_pred CccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCC-CCCCccccchHHHHHHHHHhcCCeEEEEEcccchhHHHHH
Q 035798 127 MPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRD-DGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLL 205 (313)
Q Consensus 127 g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~-~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~AalL 205 (313)
|.++.+.+.....-+-..+.. .=||...+|+||=.+. .-|.=|.+..|-.+.+++...+.|+.|+.+|.+.|.|.+-
T Consensus 308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a 385 (493)
T PF01039_consen 308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA 385 (493)
T ss_dssp GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence 678888877776644444543 4699999999995431 0011122456788888999999999999999999988877
Q ss_pred HhcCCC--CcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHH
Q 035798 206 LAAGTK--GKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRR 283 (313)
Q Consensus 206 LaAG~k--GkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~E 283 (313)
+++..- ...++.|++++.+-.|.+ +..+. +.+++......=.+.-+. ..+.+++.. +...++..
T Consensus 386 m~~~~~~~~~~~Awp~a~~~vm~~e~-------a~~i~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~ 451 (493)
T PF01039_consen 386 MCGRGYGPDFVFAWPTAEIGVMGPEG-------AASIL-YRDELEAAEAEGADPEAQ----RAEKIAEYE--DELSSPYR 451 (493)
T ss_dssp TTGGGGTTSEEEEETT-EEESS-HHH-------HHHHH-THHHHHHSCHCCHSHHHH----HHHHHHHHH--HHHSSHHH
T ss_pred hcccccchhhhhhhhcceeeecChhh-------hheee-ehhhhhhhhcccchhHHH----HHHHHHHHH--HhcCCHHH
Confidence 666522 237888888887665542 22211 111221111000000000 011121111 23468999
Q ss_pred HHHcCCceEEecCCc
Q 035798 284 AKEFGVIDKVLWRGQ 298 (313)
Q Consensus 284 AleyGLID~Ii~~~~ 298 (313)
|.+.|+||.|+.+.+
T Consensus 452 ~a~~~~~D~ii~p~~ 466 (493)
T PF01039_consen 452 AASRGYVDDIIDPAE 466 (493)
T ss_dssp HHHTTSSSEESSGGG
T ss_pred HHhcCCCCCccCHHH
Confidence 999999999999764
No 134
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=91.14 E-value=0.072 Score=50.46 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=69.1
Q ss_pred HHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 035798 180 YDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLA 259 (313)
Q Consensus 180 YDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A 259 (313)
|..|..++.||.+-+=|-|.++|.=|..|++- ||+...+.|-+...-.|. +.|+ .-|.++-+.
T Consensus 119 ~t~ie~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDvgl-----aADv----GTL~Rlpkv------ 181 (292)
T KOG1681|consen 119 FTAIERCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDVGL-----AADV----GTLNRLPKV------ 181 (292)
T ss_pred HHHHHhCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeeeeh-----hhch----hhHhhhhHH------
Confidence 45566667788777788888888889999998 999999999999876432 4453 223333222
Q ss_pred HHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCCcc
Q 035798 260 KHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRGQE 299 (313)
Q Consensus 260 ~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~~~ 299 (313)
.| ...-+.+..-.-+-|+|.||++.|||-+|...+++
T Consensus 182 --VG-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ 218 (292)
T KOG1681|consen 182 --VG-NQSLARELAFTARKFSADEALDSGLVSRVFPDKEE 218 (292)
T ss_pred --hc-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHH
Confidence 22 11122333333466899999999999999987654
No 135
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=90.88 E-value=1.3 Score=43.20 Aligned_cols=100 Identities=13% Similarity=0.199 Sum_probs=69.8
Q ss_pred EEcCccCHHHHHHHHHHHhhchhcCC----CCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcC--CeEEEEEccc
Q 035798 124 YIGMPLVPAVTELVVAELMYLQWMDP----KAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMK--CEVHTVAVGA 197 (313)
Q Consensus 124 fL~g~Id~~~a~~iiaqLl~L~~~d~----~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~--~~V~Tv~~G~ 197 (313)
|++|-+.+...+.+..-+. +..+.. .-|+.+++.|.|+-...++. | ......|+..+...+ .|+.+++.|-
T Consensus 79 f~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~-~-L~~~a~i~~~~~~ls~~VP~I~vv~G~ 155 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALE-LAAEDNRNGIPTAVLLLFETGGVRLQEANA-G-LAAIAEIMRAIVDLRAAVPVIGLIGGR 155 (301)
T ss_pred ccCcCcCHHHHHHHHHHHH-HHHHhCCCCCCCCEEEEecCCCcCccchHH-H-HHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 5688888888888877443 333332 26899999999988644321 1 111122343433333 7999999998
Q ss_pred --chhHHHHHHhcCCCCcEeeecCceEEEeCCC
Q 035798 198 --AIGMACLLLAAGTKGKRFMMPHAKIMIQQPR 228 (313)
Q Consensus 198 --AaS~AalLLaAG~kGkR~alPnS~iMIHqP~ 228 (313)
|++.++++.+.++- .+|.+++++.+--|.
T Consensus 156 ~gc~GG~a~~a~l~D~--iIm~~~a~iglaGP~ 186 (301)
T PRK07189 156 VGCFGGMGIAAALCSY--LIVSEEGRLGLSGPE 186 (301)
T ss_pred CCCcHHHHHHHhcCCE--EEEECCcEEeccCHH
Confidence 88888888888987 999999999887774
No 136
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=89.67 E-value=5.9 Score=38.65 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=84.3
Q ss_pred EEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccc---hHHHHHHHHHhcCCeEEEEEcccchh
Q 035798 124 YIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMES---EGFAIYDTLMQMKCEVHTVAVGAAIG 200 (313)
Q Consensus 124 fL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~---aGlAIYDtm~~i~~~V~Tv~~G~AaS 200 (313)
|++|-+...+.+.++..+.. ..+. .-|+.++..|.|+-...|-. +..- -..+++...+.-..|..++..|-+++
T Consensus 144 f~gGSmG~v~geKi~ra~e~-A~~~-rlPlV~l~~SGGARmQEg~~-sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~G 220 (296)
T CHL00174 144 FMGGSMGSVVGEKITRLIEY-ATNE-SLPLIIVCASGGARMQEGSL-SLMQMAKISSALYDYQSNKKLFYISILTSPTTG 220 (296)
T ss_pred ccccCcCHHHHHHHHHHHHH-HHHc-CCCEEEEECCCCccccccch-hhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCch
Confidence 67888888888888775443 3223 46888888888876543321 1000 00122322223457889999999888
Q ss_pred HHHHHHhc-CCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccc
Q 035798 201 MACLLLAA-GTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHM 279 (313)
Q Consensus 201 ~AalLLaA-G~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~l 279 (313)
.++..++. |+- .++-|+|.+.+--|. ++.+-+|. .+. +-|-
T Consensus 221 G~aas~a~l~Di--iiae~~A~IgfAGPr----------------------------VIe~t~ge-------~lp-e~fq 262 (296)
T CHL00174 221 GVTASFGMLGDI--IIAEPNAYIAFAGKR----------------------------VIEQTLNK-------TVP-EGSQ 262 (296)
T ss_pred HHHHHHHHcccE--EEEeCCeEEEeeCHH----------------------------HHHHhcCC-------cCC-cccc
Confidence 88888775 886 788888877554432 11112231 112 2255
Q ss_pred cHHHHHHcCCceEEecCCc
Q 035798 280 DSRRAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 280 sA~EAleyGLID~Ii~~~~ 298 (313)
+|+-.++.|+||.|+.+.+
T Consensus 263 ~ae~l~~~G~vD~iV~r~~ 281 (296)
T CHL00174 263 AAEYLFDKGLFDLIVPRNL 281 (296)
T ss_pred cHHHHHhCcCceEEEcHHH
Confidence 8888899999999999764
No 137
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=88.95 E-value=4.1 Score=38.52 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=74.0
Q ss_pred hcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHH----------HHhcCCeEEEEEcccchhHHHHHHhcCCCCcEe
Q 035798 146 WMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDT----------LMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRF 215 (313)
Q Consensus 146 ~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDt----------m~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~ 215 (313)
...++.+|.+.|.+||--. |.-.+-+.|+.. -+.-..||.+.++|.|.|.|.+ ..+-.-+.-+
T Consensus 60 ~~~~krpIv~lVD~~sQa~------grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFL-A~GlqA~rl~ 132 (234)
T PF06833_consen 60 RSGPKRPIVALVDVPSQAY------GRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFL-AHGLQANRLI 132 (234)
T ss_pred hcCCCCCEEEEEeCCcccc------chHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHH-HHHHHhcchh
Confidence 3467899999999999554 333555555444 4455689999999999997744 4332223468
Q ss_pred eecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccc--cHHHHHHcCCceEE
Q 035798 216 MMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHM--DSRRAKEFGVIDKV 293 (313)
Q Consensus 216 alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~l--sA~EAleyGLID~I 293 (313)
++| -.|+|=.. .+..|+-|.+++|++++..+..--| ..+-=..+|.++++
T Consensus 133 AL~--ga~i~vM~--------------------------~~s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l 184 (234)
T PF06833_consen 133 ALP--GAMIHVMG--------------------------KPSAARVTKRPVEELEELAKSVPVFAPGIENYAKLGALDEL 184 (234)
T ss_pred cCC--CCeeecCC--------------------------hHHhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhccHHHH
Confidence 888 55666321 1244666777777777766543333 34555666777777
Q ss_pred ec
Q 035798 294 LW 295 (313)
Q Consensus 294 i~ 295 (313)
++
T Consensus 185 ~~ 186 (234)
T PF06833_consen 185 WD 186 (234)
T ss_pred hc
Confidence 76
No 138
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=88.09 E-value=4.2 Score=39.19 Aligned_cols=100 Identities=14% Similarity=0.212 Sum_probs=67.0
Q ss_pred EEcCccCHHHHHHHHHHHhhchhc----CCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcC--CeEEEEEccc
Q 035798 124 YIGMPLVPAVTELVVAELMYLQWM----DPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMK--CEVHTVAVGA 197 (313)
Q Consensus 124 fL~g~Id~~~a~~iiaqLl~L~~~----d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~--~~V~Tv~~G~ 197 (313)
|++|-+.+...+.++.-+. +..+ ...-|+.+.+.|.|+-...++. |. ...-.|+..+...+ .|+.+++.|-
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~-~L-~~~a~i~~~~~~ls~~vP~Isvv~Gp 146 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALR-LAIEDNRKGQPTAVVLLLDTGGVRLQEANA-GL-IAIAEIMRAILDARAAVPVIGVIGGR 146 (274)
T ss_pred ccCcCCCHHHHHHHHHHHH-HHHhhhhccCCCCEEEEEcCCCcChhhhHH-HH-HHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 5688888888877776443 3322 1124899999999987643321 11 11112333333333 7999999999
Q ss_pred --chhHHHHHHhcCCCCcEeeecCceEEEeCCC
Q 035798 198 --AIGMACLLLAAGTKGKRFMMPHAKIMIQQPR 228 (313)
Q Consensus 198 --AaS~AalLLaAG~kGkR~alPnS~iMIHqP~ 228 (313)
|++.++++.+.++- .+|.+++++.+--|.
T Consensus 147 ~gc~GG~a~~a~l~D~--vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 147 VGCFGGMGIAAGLCSY--LIMTEEGRLGLSGPE 177 (274)
T ss_pred CCcchHHHHHHhcCCE--EEEeCCcEEeccCHH
Confidence 78888888888987 999999999887774
No 139
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=85.56 E-value=0.82 Score=43.24 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCC--CCCCHHHHHHHHHHHHHHHHHH
Q 035798 177 FAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSS--GLLPASDVLIRAKEAMVNRDTL 254 (313)
Q Consensus 177 lAIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~--G~g~asDi~i~akel~~~r~~l 254 (313)
+-+--.|+.++.+|...+-|.|.+.|-+|-.-++- -++..|++|.=--|.+|+. |.| +
T Consensus 106 LdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~G-s----------------- 165 (282)
T COG0447 106 LDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYG-S----------------- 165 (282)
T ss_pred hhHHHHHHhCCcceEEEEeeEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCccc-H-----------------
Confidence 34444677788999999999999999999888887 7888999998888887653 222 1
Q ss_pred HHHHHHHhCCCHH-HHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 255 VKLLAKHTGNSEE-FVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 255 ~~i~A~~TG~s~e-~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
.++|+..|+... +|. -=-+..+|+||++.|+|..|+...
T Consensus 166 -~ylar~VGqKkArEIw---fLcR~Y~A~eal~MGlVN~Vvp~~ 205 (282)
T COG0447 166 -SYLARIVGQKKAREIW---FLCRQYDAEEALDMGLVNTVVPHA 205 (282)
T ss_pred -HHHHHHhhhhhhHHhh---hhhhhccHHHHHhcCceeeeccHH
Confidence 233444443221 222 112345999999999999998754
No 140
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=78.92 E-value=7.1 Score=40.97 Aligned_cols=157 Identities=16% Similarity=0.121 Sum_probs=87.5
Q ss_pred EcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCC-CCCCccccchHHHHHHHHHhcCCeEEEEEcccchhHHH
Q 035798 125 IGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRD-DGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMAC 203 (313)
Q Consensus 125 L~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~-~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~G~AaS~Aa 203 (313)
++|-|+.+.+..- |+++.|-... .=||.+..|.||=.+. +-|.-|.+--|--+...+-..+.|..|+.+|-+.+.|.
T Consensus 336 ~~G~l~~~sa~Ka-ArFI~~cd~~-~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~ 413 (526)
T COG4799 336 LGGVLDIDSADKA-ARFIRLCDAF-NIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAY 413 (526)
T ss_pred cccccchHHHHHH-HHHHHhhhcc-CCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEeccccccee
Confidence 3677887766543 3344443322 4689999999984331 11222334667778888999999999999999999988
Q ss_pred HHHhcCCCCcEeeecCceEEEeCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccH
Q 035798 204 LLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLL--PASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDS 281 (313)
Q Consensus 204 lLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g--~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA 281 (313)
+.+++..- +..+++-.|..-...+| ++..+ .+.+++....+. .++.-.-.+.+.+. -++.+-++
T Consensus 414 ~~M~~~~~-------~~~~~~AwP~a~iaVMG~egAv~i-~~~k~l~~~~~~-----~~~~~~~~~~~~~e-Y~~~~~~p 479 (526)
T COG4799 414 YVMGGKAL-------GPDFNYAWPTAEIAVMGPEGAVSI-LYRKELAAAERP-----EEREALLRKQLIAE-YEEQFSNP 479 (526)
T ss_pred eeecCccC-------CCceeEecCcceeeecCHHHHHHH-HHHHHhhcccCc-----hhHHHHHHHHHHHH-HHHhccch
Confidence 87665443 24555555543222111 12222 122444433222 00000000111111 12334556
Q ss_pred HHHHHcCCceEEecCC
Q 035798 282 RRAKEFGVIDKVLWRG 297 (313)
Q Consensus 282 ~EAleyGLID~Ii~~~ 297 (313)
--|-+.|+||.|+...
T Consensus 480 ~~aa~r~~iD~vI~p~ 495 (526)
T COG4799 480 YYAAERGYIDAVIDPA 495 (526)
T ss_pred HHHHHhCCCCcccCHH
Confidence 6678899999999865
No 141
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=77.99 E-value=9.8 Score=35.89 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=62.3
Q ss_pred HHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 035798 179 IYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 258 (313)
Q Consensus 179 IYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~ 258 (313)
+.+.||.++.||..-+-|.|+-+|+-|.++++- ..+..+|.|..--.-.|..- +..-+. +.+.--+=...|
T Consensus 117 vmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tPG~~vGlFC--STPGvA-----laRavpRkva~~ 187 (287)
T KOG1682|consen 117 VMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTPGAGVGLFC--STPGVA-----LARAVPRKVAAY 187 (287)
T ss_pred HHHHHhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCCCCceeeEe--cCcchh-----HhhhcchhHHHH
Confidence 345566778899999999999999999999986 77888887753322211110 011111 111111122334
Q ss_pred HHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCCc
Q 035798 259 AKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRGQ 298 (313)
Q Consensus 259 A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~~ 298 (313)
.-.||++ .+++||+--|++.+|+..++
T Consensus 188 ML~Tg~P-------------i~~eeAl~sGlvskvVp~~e 214 (287)
T KOG1682|consen 188 MLMTGLP-------------ITGEEALISGLVSKVVPAEE 214 (287)
T ss_pred HHHhCCC-------------CchHHHHHhhhhhhcCCHHH
Confidence 4456654 58999999999999998654
No 142
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=73.20 E-value=27 Score=36.99 Aligned_cols=99 Identities=12% Similarity=0.149 Sum_probs=65.3
Q ss_pred EEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCC-CCccccchHH-HHHHH-HHhc--CCeEEEEEcccc
Q 035798 124 YIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDG-ESVGMESEGF-AIYDT-LMQM--KCEVHTVAVGAA 198 (313)
Q Consensus 124 fL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~-e~vg~v~aGl-AIYDt-m~~i--~~~V~Tv~~G~A 198 (313)
|++|-+.....+.++. +..+-.+. .-||..+++|+|+-.... |..+. ..++ .|+.. -+.+ ..|..++++|-|
T Consensus 140 v~GGs~g~~~~~Ki~r-~~elA~~~-~lPlV~l~DSgGarl~~q~e~~~~-~~~~g~if~~~~~ls~~~VP~Isvv~G~~ 216 (569)
T PLN02820 140 VKGGTYYPITVKKHLR-AQEIAAQC-RLPCIYLVDSGGANLPRQAEVFPD-RDHFGRIFYNQARMSSAGIPQIALVLGSC 216 (569)
T ss_pred ccCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCcCCcccccccch-HhHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 4578888888888877 44343333 469999999999875221 11100 0121 24433 3323 479999999999
Q ss_pred hhHHHHHHhcCCCCcEeee-cCceEEEeCC
Q 035798 199 IGMACLLLAAGTKGKRFMM-PHAKIMIQQP 227 (313)
Q Consensus 199 aS~AalLLaAG~kGkR~al-PnS~iMIHqP 227 (313)
++.++++.+.++. .+|. +++.+.+--|
T Consensus 217 ~gGgAy~~a~~D~--vim~~~~a~i~~aGP 244 (569)
T PLN02820 217 TAGGAYVPAMADE--SVIVKGNGTIFLAGP 244 (569)
T ss_pred ChHHHHHHHhCCc--eEEecCCcEEEecCH
Confidence 9999999887775 5665 5788887766
No 143
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=72.88 E-value=3.6 Score=39.01 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=68.8
Q ss_pred hHHHHHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCC----CCCCCCHHHHHHHHHHHHHH
Q 035798 175 EGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLP----SSGLLPASDVLIRAKEAMVN 250 (313)
Q Consensus 175 aGlAIYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g----~~G~g~asDi~i~akel~~~ 250 (313)
.--.+++.+..++.||..-..|.|.+.|-=+..+++- |.+..++.+.+-...+. .+| .| ++
T Consensus 112 ~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDi--Rva~s~akmGLvET~laiiPGaGG-tQ------------RL 176 (291)
T KOG1679|consen 112 GLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDI--RVAASSAKMGLVETKLAIIPGAGG-TQ------------RL 176 (291)
T ss_pred HHHHHHHHHHhCCccceehhcchhcccchhhhhhccc--eehhhhccccccccceeeecCCCc-cc------------hh
Confidence 3345677777888899999999999999999999998 99999999887665432 222 11 11
Q ss_pred HHHHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCCcc
Q 035798 251 RDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRGQE 299 (313)
Q Consensus 251 r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~~~ 299 (313)
-+.+--.+| +++.-..+.|++.||...|||.+|++..+|
T Consensus 177 pR~vg~ala----------KELIftarvl~g~eA~~lGlVnhvv~qnee 215 (291)
T KOG1679|consen 177 PRIVGVALA----------KELIFTARVLNGAEAAKLGLVNHVVEQNEE 215 (291)
T ss_pred HHHHhHHHH----------HhHhhhheeccchhHHhcchHHHHHhcCcc
Confidence 111111122 223333467888999999999999886643
No 144
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=72.26 E-value=3.9 Score=39.30 Aligned_cols=98 Identities=17% Similarity=0.211 Sum_probs=62.8
Q ss_pred HHHHHHhcCCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 035798 179 IYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 258 (313)
Q Consensus 179 IYDtm~~i~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~ 258 (313)
..+++-.++.|+.+.+-|=|.+.|+.||.-++- .++. -+.-+|.|+... | +..|--.-. .+
T Consensus 99 ~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~--V~A~--Dka~F~TPfa~l-G--q~PEG~Ss~------------t~ 159 (266)
T KOG0016|consen 99 FVNTFINFPKPLVALVNGPAIGLGASILPLCDY--VWAS--DKAWFQTPFAKL-G--QSPEGCSSV------------TL 159 (266)
T ss_pred HHHHHhcCCCCEEEEecCCccchhhHHhhhhhe--EEec--cceEEeccchhc-C--CCCCcceee------------ee
Confidence 457777788999999999999999999999996 6666 566678887532 2 111100000 00
Q ss_pred HHHhCCCHHHHHHhhcCCccccHHHHHHcCCceEEecCC
Q 035798 259 AKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVIDKVLWRG 297 (313)
Q Consensus 259 A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLID~Ii~~~ 297 (313)
-+..| .+.-.+++=-..-|+|+||.++|||++|....
T Consensus 160 p~imG--~~~A~E~ll~~~kltA~Ea~~~glVskif~~~ 196 (266)
T KOG0016|consen 160 PKIMG--SASANEMLLFGEKLTAQEACEKGLVSKIFPAE 196 (266)
T ss_pred hHhhc--hhhHHHHHHhCCcccHHHHHhcCchhhhcChH
Confidence 00111 11112223234568999999999999999864
No 145
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=67.34 E-value=47 Score=34.70 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=66.9
Q ss_pred EEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHH-HHH-HHHHh-cCCeEEEEEcccchh
Q 035798 124 YIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGF-AIY-DTLMQ-MKCEVHTVAVGAAIG 200 (313)
Q Consensus 124 fL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGl-AIY-Dtm~~-i~~~V~Tv~~G~AaS 200 (313)
|++|-+.....+.++.-+ .+..+. .-|+..++.|.|+-...|.. . ..++ .|+ ...+. -..|..++++|-|++
T Consensus 93 ~~gGS~g~~~~~K~~r~~-e~A~~~-~lPlV~l~dSgGarm~eg~~-~--l~~~~~~~~~~~~~s~~iP~Isvv~G~~~G 167 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVKIM-DLAMKM-GAPVVGLNDSGGARIQEAVD-A--LKGYGDIFYRNTIASGVVPQISAIMGPCAG 167 (512)
T ss_pred ccccCCCHHHHHHHHHHH-HHHHHc-CCCEEEEecCCCCCccccch-h--hhhHHHHHHHHHHHcCCCcEEEEEecCCCc
Confidence 568888888888887643 333333 46898888998887543321 1 1121 223 22222 247899999999999
Q ss_pred HHHHHHhcCCCCcEeeecCc-eEEEeCCC
Q 035798 201 MACLLLAAGTKGKRFMMPHA-KIMIQQPR 228 (313)
Q Consensus 201 ~AalLLaAG~kGkR~alPnS-~iMIHqP~ 228 (313)
.+++.++.++- .+|.+++ .+.+--|.
T Consensus 168 G~a~~~al~D~--vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 168 GAVYSPALTDF--IYMVDNTSQMFITGPQ 194 (512)
T ss_pred HHHHHHHhcCc--eEEeccceEEEecChH
Confidence 99999999997 9999974 67776664
No 146
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=60.32 E-value=49 Score=25.93 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=46.4
Q ss_pred EEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEE------EEcCCCCCCCCCCCccccchHHHHHHHHHhcCCeEEEEEc
Q 035798 122 IVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYL------YINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAV 195 (313)
Q Consensus 122 IIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~L------yINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~ 195 (313)
++.+.|+++-..++.+..++..+-...+.+.+.| ||+|.| +..=..++..++.. .+..+..
T Consensus 11 vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssg-----------i~~L~~~~~~~~~~--g~~l~l~ 77 (106)
T TIGR02886 11 IVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSG-----------LGVILGRYKKIKNE--GGEVIVC 77 (106)
T ss_pred EEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchH-----------HHHHHHHHHHHHHc--CCEEEEE
Confidence 6679999999999999999876432223344555 444444 12223334444443 4555566
Q ss_pred ccchhHHHHHHhcCC
Q 035798 196 GAAIGMACLLLAAGT 210 (313)
Q Consensus 196 G~AaS~AalLLaAG~ 210 (313)
|......-++-.+|-
T Consensus 78 ~~~~~v~~~l~~~gl 92 (106)
T TIGR02886 78 NVSPAVKRLFELSGL 92 (106)
T ss_pred eCCHHHHHHHHHhCC
Confidence 666666666666664
No 147
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=59.21 E-value=24 Score=27.84 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=44.8
Q ss_pred EEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcC-CeEEEEEcccchh
Q 035798 122 IVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMK-CEVHTVAVGAAIG 200 (313)
Q Consensus 122 IIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~-~~V~Tv~~G~AaS 200 (313)
++.+.|+++...++.+..+++..-.+...+ +|.++--|=.+-| .+..-++.+..+..+ ..+..+..|.-..
T Consensus 13 v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~--~vvlDls~v~~iD------ssg~~~l~~~~~~~~~~g~~l~l~g~~~~ 84 (109)
T cd07041 13 VLPLIGDLDDERAEQLQERLLEAISRRRAR--GVIIDLTGVPVID------SAVARHLLRLARALRLLGARTILTGIRPE 84 (109)
T ss_pred EEeeeeeECHHHHHHHHHHHHHHHHHcCCC--EEEEECCCCchhc------HHHHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 456999999999999998876433222223 4555444422211 011223333333322 3455666666677
Q ss_pred HHHHHHhcCC
Q 035798 201 MACLLLAAGT 210 (313)
Q Consensus 201 ~AalLLaAG~ 210 (313)
..-++-.+|-
T Consensus 85 v~~~l~~~gl 94 (109)
T cd07041 85 VAQTLVELGI 94 (109)
T ss_pred HHHHHHHhCC
Confidence 7777766664
No 148
>PRK09726 antitoxin HipB; Provisional
Probab=54.16 E-value=52 Score=25.66 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCCccccHHH----HHHcCCceEEecCCccchhccCCCCCcc
Q 035798 236 PASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRPYHMDSRR----AKEFGVIDKVLWRGQETIMAEVAPPEEW 311 (313)
Q Consensus 236 ~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~E----AleyGLID~Ii~~~~~~~~~d~~~~~~~ 311 (313)
+...+....+++.+.+..-.+-+|+++|.+...|.++.......+.+. |..+|+--.++......--.|--.++||
T Consensus 9 ~~~~l~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~~~~~~~~~~~~~~~~~~~~ 88 (88)
T PRK09726 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNASPESTEQQDLEW 88 (88)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcchhcccCCCCCcccccccCC
Confidence 455666666666655555567899999999999999887766666554 3445765555433322224445555555
No 149
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=51.14 E-value=32 Score=35.49 Aligned_cols=98 Identities=20% Similarity=0.324 Sum_probs=63.6
Q ss_pred EEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCC--CCCCCCCc-cccchHHHHHHHHHhc--CCeEEEEEcccc
Q 035798 124 YIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGT--TRDDGESV-GMESEGFAIYDTLMQM--KCEVHTVAVGAA 198 (313)
Q Consensus 124 fL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGG--sv~~~e~v-g~v~aGlAIYDtm~~i--~~~V~Tv~~G~A 198 (313)
|++|-+.+...+.+...+. +..+. .-|+..+++|.|+ ... |-+ +....| .|+..+... ..|+.++..|-|
T Consensus 68 ~~gGs~g~~~~~Ki~ra~~-~A~~~-~~P~v~l~dsgGa~~r~~--eg~~~l~~~g-~i~~~~~~~~~~iP~I~vv~G~~ 142 (493)
T PF01039_consen 68 VLGGSVGEVHGEKIARAIE-LALEN-GLPLVYLVDSGGAFLRMQ--EGVESLMGMG-RIFRAIARLSGGIPQISVVTGPC 142 (493)
T ss_dssp SGGGTBSHHHHHHHHHHHH-HHHHH-TEEEEEEEEESSBCGGGG--GHHHHHHHHH-HHHHHHHHHHTTS-EEEEEESEE
T ss_pred eecCCCCcccceeeehHHH-HHHHc-CCCcEEeccccccccccc--hhhhhhhhhH-HHHHHHHHHhcCCCeEEEEcccc
Confidence 4678888888888777444 33333 4678888888888 321 110 000111 222222222 589999999999
Q ss_pred hhHHHHHHhcCCCCcEeeecC-ceEEEeCCC
Q 035798 199 IGMACLLLAAGTKGKRFMMPH-AKIMIQQPR 228 (313)
Q Consensus 199 aS~AalLLaAG~kGkR~alPn-S~iMIHqP~ 228 (313)
.+.++++.+.++. .++.+. +.+.+.-|.
T Consensus 143 ~Gg~A~~~~~~d~--~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 143 TGGGAYLAALSDF--VIMVKGTARIFLAGPR 171 (493)
T ss_dssp EGGGGHHHHHSSE--EEEETTTCEEESSTHH
T ss_pred ccchhhcccccCc--cccCccceEEEecccc
Confidence 9999999999986 788887 888877764
No 150
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=44.54 E-value=78 Score=24.73 Aligned_cols=38 Identities=16% Similarity=-0.008 Sum_probs=25.7
Q ss_pred EEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCC
Q 035798 122 IVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTG 161 (313)
Q Consensus 122 IIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPG 161 (313)
++.+.|+++-..++.+..++..+-.+.. .-.|.|+-.|
T Consensus 11 ii~~~G~l~f~~~~~~~~~l~~~~~~~~--~~~vilDls~ 48 (100)
T cd06844 11 VVRLEGELDHHSVEQFKEELLHNITNVA--GKTIVIDISA 48 (100)
T ss_pred EEEEEEEecHhhHHHHHHHHHHHHHhCC--CCEEEEECCC
Confidence 6789999999999999998864332222 2345555444
No 151
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=39.86 E-value=56 Score=28.97 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=28.4
Q ss_pred EEEEcCccCHHHHHHHHHHHhh-chhcCCCCCEEEEEcCCCCCC
Q 035798 122 IVYIGMPLVPAVTELVVAELMY-LQWMDPKAPIYLYINSTGTTR 164 (313)
Q Consensus 122 IIfL~g~Id~~~a~~iiaqLl~-L~~~d~~k~I~LyINSPGGsv 164 (313)
+|-+.|.|...-++.+..++-. |.-..+.+.+.|.+-||||.|
T Consensus 102 VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rLES~GG~V 145 (155)
T PF08496_consen 102 VLDFKGDIKASEVESLREEISAILSVATPEDEVLVRLESPGGMV 145 (155)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCcee
Confidence 4446899987555444433322 222356688999999999986
No 152
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=39.70 E-value=21 Score=26.66 Aligned_cols=22 Identities=32% Similarity=0.733 Sum_probs=18.2
Q ss_pred ccccCCCCCCCCCCCCCChHHH
Q 035798 33 FCSAKIPNPMPAHINPNDPFLS 54 (313)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~ 54 (313)
.|+.....+-||.|+|.|++..
T Consensus 22 ~CG~~t~~~~P~rfSp~D~y~~ 43 (56)
T PRK13130 22 VCGGKTKNPHPPRFSPEDKYGK 43 (56)
T ss_pred CCCCCCCCCCCCCCCCCCccHH
Confidence 4567788889999999999854
No 153
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=38.21 E-value=1.5e+02 Score=23.87 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=34.4
Q ss_pred cCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcC---CCCCCCCCCCccccchHHHHHHHHHhcCCeEEEEE
Q 035798 118 LHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINS---TGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVA 194 (313)
Q Consensus 118 l~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINS---PGGsv~~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~ 194 (313)
++++..-+.+.=+-+..-.++.+.|.++ +.+.+++|||+ |.=+ |.|| .+|+....-+.=|.-||
T Consensus 15 lk~~k~kI~~~~~f~~vi~fLrk~Lk~~---~~~slFlYin~sFaPspD----e~vg------~L~~~f~~~~~Liv~Ys 81 (87)
T PF04110_consen 15 LKQKKFKISASQTFATVIAFLRKKLKLK---PSDSLFLYINNSFAPSPD----ETVG------DLYRCFGTNGELIVSYS 81 (87)
T ss_dssp -S--EEEEETTSBTHHHHHHHHHHCT-------SS-EEEEEEEE---TT----SBHH------HHHHHH-BTTBEEEEEE
T ss_pred ccCcEEEECCCCchHHHHHHHHHHhCCc---cCCeEEEEEcCccCCCch----hHHH------HHHHHhCCCCEEEEEEe
Confidence 4455555555444444445555555554 35789999995 7755 4443 56666664445577788
Q ss_pred cccchh
Q 035798 195 VGAAIG 200 (313)
Q Consensus 195 ~G~AaS 200 (313)
...|.+
T Consensus 82 ~t~A~G 87 (87)
T PF04110_consen 82 KTPAWG 87 (87)
T ss_dssp SSS---
T ss_pred cccccC
Confidence 877754
No 154
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=37.40 E-value=60 Score=27.96 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=33.6
Q ss_pred CCcEEEEcCccCHHH--HHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHH
Q 035798 119 HGRIVYIGMPLVPAV--TELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLM 184 (313)
Q Consensus 119 ~~RIIfL~g~Id~~~--a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~ 184 (313)
...+-|..=||++.. ...-+.+|+.+-..- .+.-.|.+||-.|. |--+.++.||+.|+
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~-------GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGR-------GRTTTFMVMYDLIR 149 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHHHHHHHHHHHTS--TT-EEEEE-SSSS-------HHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCC-------CHHHHHHHHHHHhC
Confidence 334667666666643 233333333222222 35789999999998 66699999999985
No 155
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=33.18 E-value=1.6e+02 Score=23.77 Aligned_cols=78 Identities=22% Similarity=0.132 Sum_probs=46.1
Q ss_pred EEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchH----HHHHHHHHhcCCeEEEEEccc
Q 035798 122 IVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEG----FAIYDTLMQMKCEVHTVAVGA 197 (313)
Q Consensus 122 IIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aG----lAIYDtm~~i~~~V~Tv~~G~ 197 (313)
+|.+.|+||...+..+...+...-... +.-++.|+.-|=++-| ++| ...+...+..+ +..+..|.
T Consensus 16 vl~l~G~lD~~~a~~~~e~~~~~~~~~--~~~~ivIDls~v~~~d-------S~gl~~L~~~~~~~~~~g--~~~~l~~i 84 (117)
T COG1366 16 VLPLIGELDAARAPALKETLLEVIAAS--GARGLVIDLSGVDFMD-------SAGLGVLVALLKSARLRG--VELVLVGI 84 (117)
T ss_pred EEEeeEEEchHHHHHHHHHHHHHHhcC--CCcEEEEECCCCceec-------hHHHHHHHHHHHHHHhcC--CeEEEEeC
Confidence 677999999999999999988333222 2333778877744311 222 22334444433 44555556
Q ss_pred chhHHHHHHhcCC
Q 035798 198 AIGMACLLLAAGT 210 (313)
Q Consensus 198 AaS~AalLLaAG~ 210 (313)
--..+-.+-..|-
T Consensus 85 ~p~v~~~~~~~gl 97 (117)
T COG1366 85 QPEVARTLELTGL 97 (117)
T ss_pred CHHHHHHHHHhCc
Confidence 5566655555554
No 156
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=32.28 E-value=2.3e+02 Score=21.87 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=43.0
Q ss_pred EEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHH----HHHHHhcCCeEEEEEccc
Q 035798 122 IVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAI----YDTLMQMKCEVHTVAVGA 197 (313)
Q Consensus 122 IIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAI----YDtm~~i~~~V~Tv~~G~ 197 (313)
+|.+.|+++-..+..+-..|..+......+.+.| +-.|=.. + =++|+.. +..++. ..+..+..|.
T Consensus 15 vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvi--dls~v~~-----i--Dssgl~~L~~~~~~~~~--~~~~~~l~~~ 83 (108)
T TIGR00377 15 IVRLSGELDAHTAPLLREKVTPAAERTGPRPIVL--DLEDLEF-----M--DSSGLGVLLGRYKQVRR--VGGQLVLVSV 83 (108)
T ss_pred EEEEecccccccHHHHHHHHHHHHHhcCCCeEEE--ECCCCeE-----E--ccccHHHHHHHHHHHHh--cCCEEEEEeC
Confidence 5668999999999888888876654222333444 4333111 0 0223332 333333 3455666666
Q ss_pred chhHHHHHHhcCC
Q 035798 198 AIGMACLLLAAGT 210 (313)
Q Consensus 198 AaS~AalLLaAG~ 210 (313)
-.....++=..|-
T Consensus 84 ~~~~~~~l~~~~l 96 (108)
T TIGR00377 84 SPRVARLLDITGL 96 (108)
T ss_pred CHHHHHHHHHhCh
Confidence 6666666655554
No 157
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=31.69 E-value=92 Score=21.40 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCHHHHHHhhcCCccccHHHHHHc
Q 035798 255 VKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEF 287 (313)
Q Consensus 255 ~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAley 287 (313)
.+-+|+.+|.+...|.++.......+.+.+...
T Consensus 12 ~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~i 44 (55)
T PF01381_consen 12 QKELAEKLGISRSTISRIENGKRNPSLDTLKKI 44 (55)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHHH
T ss_pred HHHHHHHhCCCcchhHHHhcCCCCCCHHHHHHH
Confidence 366899999999999999999899998887653
No 158
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=31.20 E-value=35 Score=25.85 Aligned_cols=27 Identities=26% Similarity=0.575 Sum_probs=19.7
Q ss_pred ccccc---ccccCCCCCCCCCCCCCChHHH
Q 035798 28 RSLKT---FCSAKIPNPMPAHINPNDPFLS 54 (313)
Q Consensus 28 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 54 (313)
-+||. .|+...-.|-|+.|+|.|||-.
T Consensus 14 YTLke~Cp~CG~~t~~~~PprFSPeD~y~k 43 (59)
T COG2260 14 YTLKEKCPVCGGDTKVPHPPRFSPEDKYGK 43 (59)
T ss_pred eeecccCCCCCCccccCCCCCCCccchHHH
Confidence 35664 4566666778899999999853
No 159
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=28.33 E-value=3.3e+02 Score=26.08 Aligned_cols=143 Identities=17% Similarity=0.189 Sum_probs=79.0
Q ss_pred CCCChhhhccCCcEEEEcC--ccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhc
Q 035798 109 PPPDLPSLLLHGRIVYIGM--PLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQM 186 (313)
Q Consensus 109 ~~~di~s~Ll~~RIIfL~g--~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i 186 (313)
++++||.- .++++.+-. +|-+...+.+...+..+-.+...+.|...=-.|.....+...|=.+...--.-+.++..
T Consensus 67 ~P~RIY~~--~~~~~~~~~dv~I~p~~i~e~s~~v~~w~~~~~v~~ii~~~g~~~~~~~e~~~v~~va~~~~~~~~l~~~ 144 (244)
T COG1938 67 PPFRIYAS--SDGVLALVSDVPIPPAVIYEISNAVVEWAEENGVEEVISLGGMPARLREEKPSVYGVATSEEKLEKLKDL 144 (244)
T ss_pred CceeEEec--CCCEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCCcccccCCCceEEEecchhhhhHHhhc
Confidence 57899987 778777644 56678888888888755555545555444333444333333331122222223444443
Q ss_pred CCeEEEEEcccchhHHHHHHhcCCCCcEeeecCceEEEeC------CCCCC---------CC-CCCHHHHHHHHHHHHHH
Q 035798 187 KCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQ------PRLPS---------SG-LLPASDVLIRAKEAMVN 250 (313)
Q Consensus 187 ~~~V~Tv~~G~AaS~AalLLaAG~kGkR~alPnS~iMIHq------P~~g~---------~G-~g~asDi~i~akel~~~ 250 (313)
. +...-.|...++.+.||..+.+ | -.|+..+.--. |.... .| +-+.+++.++|+++...
T Consensus 145 ~--~~~~~~G~I~G~~g~ll~e~~~--r-~i~a~~ll~et~~~~PDP~AAa~vve~lnk~~~l~V~td~L~keAe~i~~~ 219 (244)
T COG1938 145 G--AEPLEEGTIVGPSGALLNECLK--R-GIPALVLLAETFGDRPDPRAAARVVEALNKMLGLNVDTDKLEKEAEEIEEQ 219 (244)
T ss_pred C--CCccccceeecccHHHHHHHHH--c-CCCeEEEeccccCCCCChHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHH
Confidence 3 6677788888898888888875 3 23444443221 11000 01 12456677777777655
Q ss_pred HHHHHHHH
Q 035798 251 RDTLVKLL 258 (313)
Q Consensus 251 r~~l~~i~ 258 (313)
-+++.+-+
T Consensus 220 lekl~eq~ 227 (244)
T COG1938 220 LEKLAEQL 227 (244)
T ss_pred HHHHHHHH
Confidence 55544443
No 160
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=27.67 E-value=77 Score=24.10 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCC-CHHHHHHhhcCCccccHHHHHHc
Q 035798 252 DTLVKLLAKHTGN-SEEFVTKTIRRPYHMDSRRAKEF 287 (313)
Q Consensus 252 ~~l~~i~A~~TG~-s~e~I~~~~~rd~~lsA~EAley 287 (313)
+.+++-+.+-+|. +.++|.. |-++..|+|.||++-
T Consensus 6 rk~VQ~iKEiv~~hse~eIya-~L~ecnMDpnea~qr 41 (60)
T PF06972_consen 6 RKTVQSIKEIVGCHSEEEIYA-MLKECNMDPNEAVQR 41 (60)
T ss_pred HHHHHHHHHHhcCCCHHHHHH-HHHHhCCCHHHHHHH
Confidence 3455666777777 8888874 445788888888763
No 161
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=26.62 E-value=1.6e+02 Score=19.88 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=24.9
Q ss_pred HHHHHHHhCCCHHHHHHhhcCCccccHHHHHH
Q 035798 255 VKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKE 286 (313)
Q Consensus 255 ~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAle 286 (313)
.+-+|+.+|.+...|.++.....-.+.+++..
T Consensus 18 q~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~~ 49 (58)
T TIGR03070 18 QADLADLAGVGLRFIRDVENGKPTVRLDKVLR 49 (58)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHH
Confidence 46789999999999999887766666666543
No 162
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=26.10 E-value=1.9e+02 Score=30.68 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=61.6
Q ss_pred cCccCHHHHHHHHH-HHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcC-CeEEEEEcccchhHHH
Q 035798 126 GMPLVPAVTELVVA-ELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMK-CEVHTVAVGAAIGMAC 203 (313)
Q Consensus 126 ~g~Id~~~a~~iia-qLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~-~~V~Tv~~G~AaS~Aa 203 (313)
+|.+.+-.++.++. |=+.++ + ..|+....+|-|+...++ +...--.|.--|+.-+.+. .|..|+++|-|+..|+
T Consensus 104 gGt~~~~~~~Ki~r~~~~A~~--~-g~P~i~l~dsgGari~~~-v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGga 179 (526)
T COG4799 104 GGTLGEMTAKKILRAQELAIE--N-GLPVIGLNDSGGARIQEG-VPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGA 179 (526)
T ss_pred cccccccccchHHHHHHHHHH--c-CCCEEEEEcccccccccC-ccccccchHHHHHHHHhccCCCEEEEEEecCccccc
Confidence 45555544444444 333333 2 356655556666665443 3222234667777777665 7888889999999999
Q ss_pred HHHhcCCCCcEeeecC-ceEEEeCC
Q 035798 204 LLLAAGTKGKRFMMPH-AKIMIQQP 227 (313)
Q Consensus 204 lLLaAG~kGkR~alPn-S~iMIHqP 227 (313)
++-+.++. -+|-++ +.+.+--|
T Consensus 180 Y~pal~D~--~imv~~~~~mfltGP 202 (526)
T COG4799 180 YSPALTDF--VIMVRDQSYMFLTGP 202 (526)
T ss_pred ccccccce--EEEEcCCccEEeeCH
Confidence 99999997 788887 66666555
No 163
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=25.73 E-value=1.7e+02 Score=22.43 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCHHHHHHhhcCCccccH
Q 035798 253 TLVKLLAKHTGNSEEFVTKTIRRPYHMDS 281 (313)
Q Consensus 253 ~l~~i~A~~TG~s~e~I~~~~~rd~~lsA 281 (313)
.+.+.+|+.+|.+..++.++++.. .+++
T Consensus 45 ~~~~~lAk~~G~t~~~l~~~~~~G-kit~ 72 (75)
T TIGR02675 45 GALQALAKAMGVTRGELRKMLSDG-KLTA 72 (75)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCC-CCcc
Confidence 466889999999999999887654 3443
No 164
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=25.27 E-value=41 Score=23.34 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=15.7
Q ss_pred cCCccccHHHHHHcCCceE
Q 035798 274 RRPYHMDSRRAKEFGVIDK 292 (313)
Q Consensus 274 ~rd~~lsA~EAleyGLID~ 292 (313)
.....|+-+||++.||||.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4567899999999999995
No 165
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.80 E-value=2.2e+02 Score=23.27 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=38.3
Q ss_pred cCceEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Q 035798 218 PHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLAKHTGNSEEFVTKTI 273 (313)
Q Consensus 218 PnS~iMIHqP~~g~~G~g~asDi~i~akel~~~r~~l~~i~A~~TG~s~e~I~~~~ 273 (313)
.+..+-++.+ ...++....+++...|+.+..-+|+..|.++++|.+..
T Consensus 24 ~dGyL~~v~~--------~~~~~~~lV~~~N~~R~~~Y~~iA~~ng~t~~~V~~~~ 71 (95)
T PF07027_consen 24 NDGYLGVVTS--------ASAEVRALVAAINADRRALYQEIAKKNGITVEQVAATA 71 (95)
T ss_pred CCceEEecCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5667777663 13467777889999999999999999999999997754
No 166
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=24.64 E-value=3.4e+02 Score=23.22 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=43.1
Q ss_pred ccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcCCeEEEEEcc
Q 035798 117 LLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVG 196 (313)
Q Consensus 117 Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~~~V~Tv~~G 196 (313)
+|+++.--+.+.=+-+..-.++..+|.|++. +.++||||+.=-- ..+++|| .+|+....=..=|--||..
T Consensus 43 ilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as---~slflYVN~sFAP-sPDq~v~------~Ly~cf~~d~~Lvl~Yc~s 112 (116)
T KOG3439|consen 43 ILKKSKFKINPTQTFAKVILFLKKFLKLQAS---DSLFLYVNNSFAP-SPDQIVG------NLYECFGTDGKLVLNYCIS 112 (116)
T ss_pred ceecceEEeCcchhhHHHHHHHHHHhCCccc---CeEEEEEcCccCC-CchhHHH------HHHHhcCCCCEEEEEEeee
Confidence 5666666666554456667777788888763 5799999953211 1234443 4565544433445566666
Q ss_pred cch
Q 035798 197 AAI 199 (313)
Q Consensus 197 ~Aa 199 (313)
+|.
T Consensus 113 ~A~ 115 (116)
T KOG3439|consen 113 VAW 115 (116)
T ss_pred ccc
Confidence 654
No 167
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=23.74 E-value=1.8e+02 Score=28.09 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=46.2
Q ss_pred ccCCcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHH
Q 035798 117 LLHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDT 182 (313)
Q Consensus 117 Ll~~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDt 182 (313)
.+..|+.-+.+-++.+.-..+.+||-.|+++...+-..+.|-|.||.- | +..+..+||.
T Consensus 31 ~~~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~-----I--E~ya~rlfd~ 89 (271)
T COG1512 31 TLSQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGET-----I--EQYATRLFDK 89 (271)
T ss_pred cccceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCCCCCC-----H--HHHHHHHHHh
Confidence 455666777888999999999999999999988888888899999872 1 4555555655
No 168
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.66 E-value=4.7e+02 Score=22.84 Aligned_cols=75 Identities=27% Similarity=0.228 Sum_probs=48.8
Q ss_pred CChhhhccC------CcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCC-CCCCCCCccccchHHHHHHHH
Q 035798 111 PDLPSLLLH------GRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGT-TRDDGESVGMESEGFAIYDTL 183 (313)
Q Consensus 111 ~di~s~Ll~------~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGG-sv~~~e~vg~v~aGlAIYDtm 183 (313)
.|+...|++ .||-++|+. +++++.+.+.|. ...| .+.+.-..+|- + ..+--+|.+.|
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~---~~yP--~l~ivg~~~g~f~---------~~~~~~i~~~I 97 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLR---RRYP--GLRIVGYHHGYFD---------EEEEEAIINRI 97 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHH---HHCC--CeEEEEecCCCCC---------hhhHHHHHHHH
Confidence 455555543 367777774 777777777764 3334 45554433331 2 25778999999
Q ss_pred HhcCCeEEEEEcccchhH
Q 035798 184 MQMKCEVHTVAVGAAIGM 201 (313)
Q Consensus 184 ~~i~~~V~Tv~~G~AaS~ 201 (313)
+..++++.-+++|.=-.-
T Consensus 98 ~~~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 98 NASGPDIVFVGLGAPKQE 115 (172)
T ss_pred HHcCCCEEEEECCCCHHH
Confidence 999999999998865433
No 169
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=23.13 E-value=42 Score=24.61 Aligned_cols=10 Identities=50% Similarity=1.019 Sum_probs=7.8
Q ss_pred CCCCCCCCCh
Q 035798 42 MPAHINPNDP 51 (313)
Q Consensus 42 ~~~~~~~~~~ 51 (313)
-|.|||||-|
T Consensus 37 RPSPFNPN~P 46 (52)
T PF08105_consen 37 RPSPFNPNQP 46 (52)
T ss_pred CCCCCCCCCC
Confidence 4568999976
No 170
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=23.01 E-value=3.3e+02 Score=25.17 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCHHHHHHhhcCCccccHHHH
Q 035798 254 LVKLLAKHTGNSEEFVTKTIRRPYHMDSRRA 284 (313)
Q Consensus 254 l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EA 284 (313)
..+++++.+|.+.+.+.+.+....|.+..+.
T Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR01729 226 QVQKMAKLIGGDAEGVPQLLKGLSFPTADEQ 256 (300)
T ss_pred HHHHHHHHhCcCHHHHHHHHhcCCCCCHHHh
Confidence 3478899999999999999888777777554
No 171
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=21.65 E-value=2e+02 Score=20.29 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHhhcCC-ccccHHHH
Q 035798 245 KEAMVNRDTLVKLLAKHTGNSEEFVTKTIRRP-YHMDSRRA 284 (313)
Q Consensus 245 kel~~~r~~l~~i~A~~TG~s~e~I~~~~~rd-~~lsA~EA 284 (313)
+++++.+..=..-+|+.+|.+...+.++.... ..++.++.
T Consensus 3 ~~~m~~~~it~~~La~~~gis~~tl~~~~~~~~~~~~~~~l 43 (63)
T PF13443_consen 3 KELMAERGITQKDLARKTGISRSTLSRILNGKPSNPSLDTL 43 (63)
T ss_dssp HHHHHHTT--HHHHHHHHT--HHHHHHHHTTT-----HHHH
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHHhcccccccHHHH
Confidence 44555555555678999999999999998876 46665543
No 172
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=21.53 E-value=5.5e+02 Score=22.40 Aligned_cols=77 Identities=23% Similarity=0.217 Sum_probs=47.2
Q ss_pred CCChhhhccC------CcEEEEcCccCHHHHHHHHHHHhhchhcCCCCCEEEEEcCCCCCCCCCCCccccchHHHHHHHH
Q 035798 110 PPDLPSLLLH------GRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTL 183 (313)
Q Consensus 110 ~~di~s~Ll~------~RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm 183 (313)
..|+...|++ .||.++|+ ++++.+.+...| ...-|.-.|.-+-+-|-+. .+-..|.+.|
T Consensus 31 g~dl~~~ll~~~~~~~~~v~llG~--~~~~~~~~~~~l---~~~yp~l~i~g~~~g~~~~----------~~~~~i~~~I 95 (171)
T cd06533 31 GSDLMPALLELAAQKGLRVFLLGA--KPEVLEKAAERL---RARYPGLKIVGYHHGYFGP----------EEEEEIIERI 95 (171)
T ss_pred cHHHHHHHHHHHHHcCCeEEEECC--CHHHHHHHHHHH---HHHCCCcEEEEecCCCCCh----------hhHHHHHHHH
Confidence 3566555532 45666766 466666666655 3334443444444444443 2334489999
Q ss_pred HhcCCeEEEEEcccchhH
Q 035798 184 MQMKCEVHTVAVGAAIGM 201 (313)
Q Consensus 184 ~~i~~~V~Tv~~G~AaS~ 201 (313)
+..++++.-+++|.=-.-
T Consensus 96 ~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 96 NASGADILFVGLGAPKQE 113 (171)
T ss_pred HHcCCCEEEEECCCCHHH
Confidence 999999999999865544
No 173
>smart00250 PLEC Plectin repeat.
Probab=21.06 E-value=58 Score=21.66 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.0
Q ss_pred CCccccHHHHHHcCCceEE
Q 035798 275 RPYHMDSRRAKEFGVIDKV 293 (313)
Q Consensus 275 rd~~lsA~EAleyGLID~I 293 (313)
...-||-.||++-|+||..
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 5567899999999999964
No 174
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=20.99 E-value=1.6e+02 Score=28.74 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHhhcCCccc-cHHHHHHcCCceEE
Q 035798 252 DTLVKLLAKHTGNSEEFVTKTIRRPYHM-DSRRAKEFGVIDKV 293 (313)
Q Consensus 252 ~~l~~i~A~~TG~s~e~I~~~~~rd~~l-sA~EAleyGLID~I 293 (313)
+...+++++.+|.+.+.+.+.+++..|+ +++|.+.+-.-|.+
T Consensus 226 ~ea~~~~ak~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (328)
T TIGR03427 226 KAALEAMAKASGTDLAGYKAQLKTTKMFYTPKEAVAFTTSPDL 268 (328)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHhhccccCCHHHHHhhhcCccH
Confidence 5578999999999999999999988874 66666655333333
No 175
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=20.95 E-value=5.5e+02 Score=23.27 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=46.6
Q ss_pred ChhhhccCCcEEEEc-CccCHHHHHHHHHHHhhchhcCCCCCEEEEE-cCCCCCCCCCCCccccchHHHHHHHHHh----
Q 035798 112 DLPSLLLHGRIVYIG-MPLVPAVTELVVAELMYLQWMDPKAPIYLYI-NSTGTTRDDGESVGMESEGFAIYDTLMQ---- 185 (313)
Q Consensus 112 di~s~Ll~~RIIfL~-g~Id~~~a~~iiaqLl~L~~~d~~k~I~LyI-NSPGGsv~~~e~vg~v~aGlAIYDtm~~---- 185 (313)
|-|++++.. |-||. ...+....+.+.+.|..+...+ .+.+.|=+ +.+||+ +..+..|...+-.
T Consensus 41 ~~~~~~~~~-igYi~i~sf~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~---------~~~~~~i~~~f~~~~~~ 109 (211)
T cd07560 41 DPYSRYLTP-IGYIRITSFSENTAEELKKALKELKKQG-MKGLILDLRNNPGGL---------LDEAVEIADLFLPGGPI 109 (211)
T ss_pred CCcceeeCc-eEEEEEcccCchhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCC---------HHHHHHHHHHhcCCCeE
Confidence 445555554 44432 2234455667777666666543 35555555 456777 3555555554432
Q ss_pred --------------------cCCeEEEEEcccchhHHHHHHhc
Q 035798 186 --------------------MKCEVHTVAVGAAIGMACLLLAA 208 (313)
Q Consensus 186 --------------------i~~~V~Tv~~G~AaS~AalLLaA 208 (313)
...||..++-+..+|+|-++.++
T Consensus 110 ~~~~~~~g~~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a~~ 152 (211)
T cd07560 110 VSTKGRNGKREAYASDDGGLYDGPLVVLVNGGSASASEIVAGA 152 (211)
T ss_pred EEEEecCCceEEEecCCCccCCCCEEEEeCCCcccHHHHHHHH
Confidence 23456666666666666665544
No 176
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=20.49 E-value=2.2e+02 Score=22.43 Aligned_cols=84 Identities=23% Similarity=0.210 Sum_probs=51.2
Q ss_pred cEEEEcCccCHHHHHHHHHHHhhchhcCCC------CCEEEEEcCCCCCCCCCCCccccchHHHHHHHHHhcC-CeEEEE
Q 035798 121 RIVYIGMPLVPAVTELVVAELMYLQWMDPK------APIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMK-CEVHTV 193 (313)
Q Consensus 121 RIIfL~g~Id~~~a~~iiaqLl~L~~~d~~------k~I~LyINSPGGsv~~~e~vg~v~aGlAIYDtm~~i~-~~V~Tv 193 (313)
.|+.+.|+++...++.+...+..+-..++. ..-.|.|+.-|=..-| .+..-++.+..+.++ ..+..+
T Consensus 11 ~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iD------ssgi~~L~~~~~~~~~~g~~~~ 84 (117)
T PF01740_consen 11 LIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFID------SSGIQALVDIIKELRRRGVQLV 84 (117)
T ss_dssp EEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEES------HHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCC------HHHHHHHHHHHHHHHHCCCEEE
Confidence 477799999999999999999877655431 1245555555522101 122334444444443 556666
Q ss_pred EcccchhHHHHHHhcCC
Q 035798 194 AVGAAIGMACLLLAAGT 210 (313)
Q Consensus 194 ~~G~AaS~AalLLaAG~ 210 (313)
..|.--.....+-.+|-
T Consensus 85 l~~~~~~v~~~l~~~~~ 101 (117)
T PF01740_consen 85 LVGLNPDVRRILERSGL 101 (117)
T ss_dssp EESHHHHHHHHHHHTTG
T ss_pred EEECCHHHHHHHHHcCC
Confidence 66776666666665554
No 177
>KOG3281 consensus Mitochondrial F1-ATPase assembly protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.40 E-value=1.1e+02 Score=29.66 Aligned_cols=90 Identities=18% Similarity=0.097 Sum_probs=53.6
Q ss_pred HHHHHHHhcCchhhccCCCCCCCCCccccccCccccCCCchhccccCCCCCCCCCCCCChhhhccC-CcEEEEcCccCHH
Q 035798 54 SKLAAAAAASPEAFVNRPSNSGTLPYLDIYDSPTLMASPAQVERSASYNEHRPDTPPPDLPSLLLH-GRIVYIGMPLVPA 132 (313)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~di~s~Ll~-~RIIfL~g~Id~~ 132 (313)
.++.+-|-..|-=++.-|++...-=|+--|..|..+.++-.--+. +||..+-.--.--|+.|++ +-|||+.|++++.
T Consensus 143 d~mmsrAr~~P~FvlpLPR~e~~ef~~~qF~~~hl~fTsLleYk~--~ge~Aap~ltl~hyteL~e~KGIVlMrge~e~~ 220 (273)
T KOG3281|consen 143 DKMMSRARMYPYFVLPLPRGEGGEFFQWQFPAPHLHFTSLLEYKL--RGEYAAPHLTLLHYTELLELKGIVLMRGEVEPK 220 (273)
T ss_pred HHHHHHhhcCCeeeeccccccCceEEEEEccCCeeEeeHHHHHHh--hccccCcceeeeehhhHhhccCeEEEecccccc
Confidence 455555556654345456666666555556677666665333333 4554322223456788888 6799999999986
Q ss_pred HHHHHHHHHhhch
Q 035798 133 VTELVVAELMYLQ 145 (313)
Q Consensus 133 ~a~~iiaqLl~L~ 145 (313)
..+.--+|++.++
T Consensus 221 ~Lt~qeAQ~l~~~ 233 (273)
T KOG3281|consen 221 KLTAQEAQLLALA 233 (273)
T ss_pred cccHHHHHHHHHH
Confidence 5555555555443
No 178
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=20.26 E-value=5.6e+02 Score=22.72 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhchhcCCCCCEEEEE-cCCCCCCCCCCCccccchHHHHHHHHHhc-----------------------
Q 035798 131 PAVTELVVAELMYLQWMDPKAPIYLYI-NSTGTTRDDGESVGMESEGFAIYDTLMQM----------------------- 186 (313)
Q Consensus 131 ~~~a~~iiaqLl~L~~~d~~k~I~LyI-NSPGGsv~~~e~vg~v~aGlAIYDtm~~i----------------------- 186 (313)
+...+.+...+..++. ..+.+.|=+ |.+||+ +..+..|.+.+-.-
T Consensus 72 ~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~---------~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (224)
T cd06567 72 ESTAEELREALAELKK--GVKGLILDLRNNPGGL---------LSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGG 140 (224)
T ss_pred cchHHHHHHHHHHHHc--CCCEEEEEcCCCCCcc---------HHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCC
Confidence 4555666666655554 345565555 567877 35666666666531
Q ss_pred ---CCeEEEEEcccchhHHHHHHhcC
Q 035798 187 ---KCEVHTVAVGAAIGMACLLLAAG 209 (313)
Q Consensus 187 ---~~~V~Tv~~G~AaS~AalLLaAG 209 (313)
..||..++-+..+|+|-++..+=
T Consensus 141 ~~~~~pv~vL~~~~taSaaE~~a~~l 166 (224)
T cd06567 141 SLYDGPLVVLVNEGSASASEIFAGAL 166 (224)
T ss_pred cccCCCEEEEECCCCccHHHHHHHHH
Confidence 35667777777777777665553
No 179
>PHA00099 minor capsid protein
Probab=20.04 E-value=3.5e+02 Score=23.75 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCHHHHHHhhcCCccccHHHHHHcCCc
Q 035798 253 TLVKLLAKHTGNSEEFVTKTIRRPYHMDSRRAKEFGVI 290 (313)
Q Consensus 253 ~l~~i~A~~TG~s~e~I~~~~~rd~~lsA~EAleyGLI 290 (313)
.+=.-+.++.|.+++++.+.+++..- -+||+.+||+
T Consensus 79 sLPA~iR~~F~NdP~eml~~L~dp~N--ydEa~~LGl~ 114 (147)
T PHA00099 79 SLPAKIRERFGNDPEEMLDFLSDPEN--YDEAKALGLV 114 (147)
T ss_pred hhhHHHHHHhCCCHHHHHHHHcChhh--HHHHHhccee
Confidence 34445677899999999999887653 3799999999
Done!