BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035802
         (174 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 30.0 bits (66), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 47  RYVLAYAFNSDQDVVKYVSRLAPLLSIAIFM--DNMQSVLSGVARGIGWQHIGAYINLGA 104
           R  LA  +N D  V+   S +  LL   +F   D  Q + S   RG     +  +I+  A
Sbjct: 342 RSPLASMYNDDPAVLSIASTV--LLFAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAA 399

Query: 105 FYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVAL 142
           F+  G+   Y+L +   +   G    L++  T+ AVAL
Sbjct: 400 FWGCGLLPGYLLAYRFDMGIYGFWTALIASLTIAAVAL 437


>pdb|3HWC|A Chain A, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
           Of Burkholderia Cepacia Ac1100
 pdb|3HWC|B Chain B, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
           Of Burkholderia Cepacia Ac1100
 pdb|3HWC|C Chain C, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
           Of Burkholderia Cepacia Ac1100
 pdb|3HWC|D Chain D, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
           Of Burkholderia Cepacia Ac1100
          Length = 515

 Score = 26.9 bits (58), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
           R+       I ++ +++V +G+A        G Y+++G  Y  GIP   V+  A+   T 
Sbjct: 173 RIVEKTDDGIIVNGVKAVGTGIA-------FGDYMHIGCLYRPGIPGEQVIFAAIPTNTP 225

Query: 126 GL 127
           G+
Sbjct: 226 GV 227


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,034,677
Number of Sequences: 62578
Number of extensions: 126329
Number of successful extensions: 187
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 3
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)