Query 035802
Match_columns 174
No_of_seqs 131 out of 1588
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:32:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 99.9 2.3E-26 5E-31 185.7 18.2 157 1-158 296-452 (455)
2 PRK10189 MATE family multidrug 99.9 9.5E-27 2.1E-31 189.2 15.6 153 1-153 314-466 (478)
3 PRK00187 multidrug efflux prot 99.9 2.3E-24 5.1E-29 174.7 17.9 147 1-147 291-442 (464)
4 PRK01766 multidrug efflux prot 99.9 3.7E-24 8.1E-29 173.1 18.5 152 2-153 295-446 (456)
5 COG0534 NorM Na+-driven multid 99.9 1.7E-22 3.6E-27 163.4 18.3 150 1-151 72-223 (455)
6 PRK10367 DNA-damage-inducible 99.9 2E-22 4.3E-27 162.5 18.2 146 2-148 66-211 (441)
7 PRK09575 vmrA multidrug efflux 99.9 1.9E-22 4.1E-27 163.2 18.0 145 1-148 290-435 (453)
8 PRK10189 MATE family multidrug 99.9 1E-21 2.2E-26 159.8 17.8 147 1-148 84-236 (478)
9 PRK00187 multidrug efflux prot 99.9 1.5E-21 3.3E-26 158.3 18.2 146 2-149 66-215 (464)
10 PRK09575 vmrA multidrug efflux 99.9 1.3E-21 2.8E-26 158.3 17.5 147 2-149 69-215 (453)
11 PRK01766 multidrug efflux prot 99.9 6.7E-20 1.5E-24 148.3 18.9 148 2-150 68-219 (456)
12 PRK10367 DNA-damage-inducible 99.8 1.3E-19 2.9E-24 146.1 17.0 145 1-153 287-434 (441)
13 TIGR00797 matE putative efflux 99.8 7.4E-18 1.6E-22 131.3 17.5 146 2-148 49-196 (342)
14 PF01554 MatE: MatE; InterPro 99.8 1.1E-19 2.4E-24 127.4 4.6 114 2-115 49-162 (162)
15 TIGR01695 mviN integral membra 99.7 2.6E-16 5.6E-21 128.6 15.7 145 2-149 280-428 (502)
16 KOG1347 Uncharacterized membra 99.7 5E-18 1.1E-22 137.4 3.4 168 1-168 304-471 (473)
17 TIGR02900 spore_V_B stage V sp 99.7 2E-15 4.4E-20 122.9 16.6 143 2-149 292-434 (488)
18 TIGR02900 spore_V_B stage V sp 99.4 1.4E-11 3E-16 100.5 16.1 143 2-149 57-204 (488)
19 PF03023 MVIN: MviN-like prote 99.4 1.7E-11 3.6E-16 99.5 16.2 144 3-149 256-403 (451)
20 KOG1347 Uncharacterized membra 99.4 1E-11 2.2E-16 100.9 14.5 147 2-150 85-231 (473)
21 PRK15099 O-antigen translocase 99.4 9.5E-12 2.1E-16 99.8 14.2 138 2-148 59-196 (416)
22 TIGR01695 mviN integral membra 99.3 1.6E-10 3.6E-15 94.5 16.8 141 6-149 61-207 (502)
23 COG0728 MviN Uncharacterized m 99.3 3.6E-10 7.9E-15 92.1 16.8 146 2-150 289-438 (518)
24 PRK15099 O-antigen translocase 99.2 9.8E-10 2.1E-14 88.2 14.8 138 2-148 273-411 (416)
25 PF03023 MVIN: MviN-like prote 99.1 9.5E-09 2.1E-13 83.5 17.4 144 3-150 35-183 (451)
26 PRK10459 colanic acid exporter 98.9 1E-07 2.2E-12 78.0 16.7 133 7-146 270-402 (492)
27 COG2244 RfbX Membrane protein 98.9 1.2E-07 2.5E-12 77.4 15.5 125 2-131 270-394 (480)
28 TIGR00797 matE putative efflux 98.7 5.7E-08 1.2E-12 75.7 7.4 70 2-71 272-341 (342)
29 COG0728 MviN Uncharacterized m 98.4 2.3E-05 5E-10 64.4 16.2 148 2-150 67-217 (518)
30 PF14667 Polysacc_synt_C: Poly 98.4 3.4E-06 7.3E-11 57.9 9.3 79 68-149 2-80 (146)
31 PF13440 Polysacc_synt_3: Poly 97.9 0.002 4.3E-08 47.7 16.2 122 15-147 50-171 (251)
32 PF04506 Rft-1: Rft protein; 97.9 0.00029 6.3E-09 58.7 12.5 128 18-148 338-469 (549)
33 PRK10459 colanic acid exporter 97.9 0.00048 1E-08 56.5 13.1 115 22-143 74-188 (492)
34 PF01943 Polysacc_synt: Polysa 97.7 0.0029 6.2E-08 47.2 14.5 71 76-148 120-190 (273)
35 KOG2864 Nuclear division RFT1 97.0 0.01 2.2E-07 48.0 10.1 138 9-148 306-448 (530)
36 COG2244 RfbX Membrane protein 96.6 0.21 4.5E-06 40.9 15.2 91 3-104 65-156 (480)
37 PF07260 ANKH: Progressive ank 96.3 0.35 7.6E-06 37.7 14.8 105 9-116 72-179 (345)
38 COG4267 Predicted membrane pro 93.7 3 6.5E-05 33.5 13.9 129 3-148 82-210 (467)
39 TIGR00822 EII-Sor PTS system, 78.7 27 0.00059 26.7 9.5 15 12-26 127-141 (265)
40 PF04505 Dispanin: Interferon- 76.3 8.8 0.00019 23.6 4.6 31 8-38 43-73 (82)
41 PF03904 DUF334: Domain of unk 73.5 26 0.00057 26.0 7.0 62 16-78 141-211 (230)
42 PRK09546 zntB zinc transporter 70.7 20 0.00042 28.1 6.5 50 99-151 266-323 (324)
43 PF14184 YrvL: Regulatory prot 70.7 30 0.00065 23.4 11.2 113 25-141 4-117 (132)
44 PF14936 p53-inducible11: Tumo 68.3 40 0.00087 23.9 8.9 135 7-147 33-171 (179)
45 TIGR00383 corA magnesium Mg(2+ 61.7 73 0.0016 24.6 8.6 54 95-151 256-317 (318)
46 PF05975 EcsB: Bacterial ABC t 59.6 92 0.002 25.1 16.3 37 17-53 89-125 (386)
47 PRK09757 PTS system N-acetylga 56.9 87 0.0019 24.0 9.6 17 11-27 127-143 (267)
48 PF01102 Glycophorin_A: Glycop 56.4 17 0.00037 24.3 3.2 30 124-153 66-95 (122)
49 COG0598 CorA Mg2+ and Co2+ tra 55.1 1E+02 0.0022 24.2 10.5 52 96-151 261-321 (322)
50 PF14248 DUF4345: Domain of un 54.6 60 0.0013 21.4 13.5 62 22-83 1-62 (124)
51 PRK10739 putative antibiotic t 54.4 82 0.0018 22.9 8.0 60 6-69 21-80 (197)
52 COG0170 SEC59 Dolichol kinase 49.4 14 0.00031 27.2 2.1 40 2-41 126-165 (216)
53 PRK11212 hypothetical protein; 48.7 1.1E+02 0.0023 22.6 12.0 25 7-34 57-81 (210)
54 COG1738 yhhQ Uncharacterized m 48.5 1.1E+02 0.0025 22.9 13.2 73 8-86 71-143 (233)
55 PRK11085 magnesium/nickel/coba 47.7 1.4E+02 0.003 23.5 9.5 54 95-151 254-315 (316)
56 PF05393 Hum_adeno_E3A: Human 44.4 47 0.001 20.8 3.5 28 121-148 29-56 (94)
57 PF04995 CcmD: Heme exporter p 43.3 54 0.0012 17.6 4.8 21 127-147 7-27 (46)
58 PF02592 DUF165: Uncharacteriz 42.5 1.1E+02 0.0023 20.9 11.0 71 7-85 15-85 (145)
59 PRK13453 F0F1 ATP synthase sub 41.6 92 0.002 21.9 5.3 32 119-153 11-42 (173)
60 PF02652 Lactate_perm: L-lacta 40.9 2E+02 0.0044 24.4 7.9 17 88-104 202-218 (522)
61 PF01914 MarC: MarC family int 39.3 1.5E+02 0.0032 21.6 8.0 55 10-68 25-79 (203)
62 TIGR00788 fbt folate/biopterin 39.1 2.1E+02 0.0046 23.5 7.7 23 124-146 421-443 (468)
63 PRK14472 F0F1 ATP synthase sub 38.2 68 0.0015 22.6 4.2 32 122-153 11-42 (175)
64 PF11457 DUF3021: Protein of u 37.4 1.2E+02 0.0027 20.1 16.5 29 20-49 3-31 (136)
65 PF07074 TRAP-gamma: Transloco 36.2 1.6E+02 0.0034 21.0 6.7 42 106-147 26-67 (170)
66 TIGR03141 cytochro_ccmD heme e 35.1 76 0.0016 16.9 4.7 20 127-146 8-27 (45)
67 COG1620 LldP L-lactate permeas 32.7 3.1E+02 0.0068 23.3 9.1 78 60-148 178-255 (522)
68 PF02687 FtsX: FtsX-like perme 32.7 1.3E+02 0.0028 18.8 6.5 45 10-54 33-77 (121)
69 COG1295 Rbn Ribonuclease BN fa 32.4 2.4E+02 0.0052 21.9 15.6 26 96-121 224-249 (303)
70 PF11044 TMEMspv1-c74-12: Plec 31.5 91 0.002 16.8 3.9 11 127-137 19-29 (49)
71 PF01235 Na_Ala_symp: Sodium:a 31.2 3E+02 0.0065 22.7 9.3 49 124-172 363-413 (416)
72 COG2271 UhpC Sugar phosphate p 30.9 3.2E+02 0.0068 22.8 7.5 86 10-95 40-137 (448)
73 PF01148 CTP_transf_1: Cytidyl 30.5 2.2E+02 0.0048 20.9 6.2 43 2-44 142-185 (259)
74 PF00558 Vpu: Vpu protein; In 30.1 1.2E+02 0.0027 18.7 3.7 17 146-162 30-46 (81)
75 PRK10995 inner membrane protei 30.1 2.3E+02 0.0049 20.9 7.9 58 7-68 26-83 (221)
76 TIGR00427 membrane protein, Ma 29.9 2.2E+02 0.0048 20.7 7.9 58 7-68 25-82 (201)
77 PTZ00370 STEVOR; Provisional 29.8 1.1E+02 0.0024 23.7 4.2 27 124-150 256-282 (296)
78 KOG4453 Predicted ER membrane 29.7 47 0.001 24.8 2.2 43 2-44 168-210 (269)
79 PRK01637 hypothetical protein; 28.7 2.7E+02 0.0058 21.3 15.5 8 110-117 216-223 (286)
80 PRK11111 hypothetical protein; 26.7 2.6E+02 0.0057 20.6 7.9 49 16-68 37-85 (214)
81 PF04235 DUF418: Protein of un 26.3 2.2E+02 0.0048 19.5 14.6 28 17-44 9-36 (163)
82 PRK13460 F0F1 ATP synthase sub 26.0 1.7E+02 0.0037 20.5 4.5 32 122-153 9-40 (173)
83 PRK00523 hypothetical protein; 26.0 1E+02 0.0022 18.6 2.7 25 125-149 4-28 (72)
84 PRK06569 F0F1 ATP synthase sub 24.8 1.8E+02 0.0039 20.4 4.3 27 128-154 9-35 (155)
85 COG2332 CcmE Cytochrome c-type 24.7 1.2E+02 0.0026 21.1 3.3 37 20-56 4-40 (153)
86 COG3763 Uncharacterized protei 24.6 1.1E+02 0.0025 18.2 2.8 26 40-65 19-44 (71)
87 PRK10484 putative transporter; 24.0 4.4E+02 0.0095 22.2 10.2 28 7-34 262-289 (523)
88 TIGR00697 conserved hypothetic 23.9 2.9E+02 0.0063 20.1 14.3 74 6-85 46-119 (202)
89 TIGR02896 spore_III_AF stage I 23.9 1.6E+02 0.0034 19.1 3.6 19 46-64 45-63 (106)
90 PHA03093 EEV glycoprotein; Pro 23.7 1.1E+02 0.0025 21.9 3.1 39 6-44 16-54 (185)
91 PF07719 TPR_2: Tetratricopept 23.6 95 0.0021 14.4 2.3 19 13-31 12-30 (34)
92 PRK09174 F0F1 ATP synthase sub 22.7 1.6E+02 0.0035 21.5 3.9 26 128-153 52-77 (204)
93 KOG0637 Sucrose transporter an 22.4 1.3E+02 0.0028 25.3 3.6 74 16-89 91-164 (498)
94 PF13374 TPR_10: Tetratricopep 22.0 1.1E+02 0.0025 14.7 3.3 29 4-32 4-32 (42)
95 PF05197 TRIC: TRIC channel; 21.8 3.3E+02 0.0071 19.9 6.0 41 44-86 35-75 (197)
96 PF03739 YjgP_YjgQ: Predicted 21.6 3.9E+02 0.0085 20.8 7.2 23 73-95 276-298 (354)
97 PF14851 FAM176: FAM176 family 21.3 2.8E+02 0.0061 19.4 4.7 41 6-46 7-47 (153)
98 PRK08476 F0F1 ATP synthase sub 21.0 2.5E+02 0.0054 19.0 4.4 25 130-154 8-32 (141)
99 PRK01844 hypothetical protein; 21.0 2E+02 0.0044 17.3 3.4 22 126-147 4-25 (72)
100 COG2213 MtlA Phosphotransferas 20.8 4.5E+02 0.0098 21.7 6.2 31 120-150 309-339 (472)
101 PF02705 K_trans: K+ potassium 20.0 5.6E+02 0.012 22.0 8.0 26 124-149 409-434 (534)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.95 E-value=2.3e-26 Score=185.75 Aligned_cols=157 Identities=29% Similarity=0.414 Sum_probs=150.8
Q ss_pred CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 035802 1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNM 80 (174)
Q Consensus 1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (174)
+++|+++++||++|+||+|++|+..+.+..+++.++++.+++++++++++.++|++|||+.+.+.+++++.+...+++++
T Consensus 296 i~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~ 375 (455)
T COG0534 296 IAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGI 375 (455)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 035802 81 QSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQKQATMV 158 (174)
Q Consensus 81 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (174)
+.+..+++||.||++.+++.++.+.|++++|+.|++.+.. +|..|+|++...++.++.+....++++++|++...+.
T Consensus 376 ~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 376 QFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 9999999999999999999999999999999999998766 9999999999999999999999999999998876553
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.95 E-value=9.5e-27 Score=189.16 Aligned_cols=153 Identities=16% Similarity=0.144 Sum_probs=148.4
Q ss_pred CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 035802 1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNM 80 (174)
Q Consensus 1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (174)
+++|+++++||++|+||+|++|+..+.+..+++.++++++++++++++++.++|++|+|+.+.+..++++.+...+++++
T Consensus 314 i~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~ 393 (478)
T PRK10189 314 LGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAA 393 (478)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 035802 81 QSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQK 153 (174)
Q Consensus 81 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
+.+..+.+||.||++.++++++++.|++.+|..|++.+..++|+.|+|++..+++.+.+++..+++++++|++
T Consensus 394 ~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 394 SWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 9999999999999999999999999999999999998888899999999999999999999999999999988
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.93 E-value=2.3e-24 Score=174.71 Aligned_cols=147 Identities=24% Similarity=0.371 Sum_probs=138.0
Q ss_pred CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccC--ch---HHHHHHHHHHHHHHHHH
Q 035802 1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNS--DQ---DVVKYVSRLAPLLSIAI 75 (174)
Q Consensus 1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~---~~~~~~~~~l~~~~~~~ 75 (174)
++.|+++++||++|+||+|++++..+.++.+++.++++++++++++++++.++|++ || |+.+.+..++++..++.
T Consensus 291 i~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~ 370 (464)
T PRK00187 291 LSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFE 370 (464)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999974 44 78999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 035802 76 FMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTS 147 (174)
Q Consensus 76 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 147 (174)
++++++.++.+++||.||++.++..++++.|++++|+.|++.+.+++|+.|+|+++.+++.+..++....++
T Consensus 371 ~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 371 LFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE 442 (464)
T ss_pred HhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888899999999999999998887766553
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.93 E-value=3.7e-24 Score=173.08 Aligned_cols=152 Identities=28% Similarity=0.409 Sum_probs=145.0
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+.|+++++||++|+||++++|+..+.++.+++.++++++++++.+++++.++|++|||+.+.+.+++++..+..++++++
T Consensus 295 ~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~ 374 (456)
T PRK01766 295 AMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQ 374 (456)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQK 153 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
.+..+++||.||++.++..++++.|++++|..|++.+..++|+.|+|+++.+++.+.+++..+++++.+|+.
T Consensus 375 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 375 VIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998899999999998888899999999999999999998888887776554
No 5
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=1.7e-22 Score=163.36 Aligned_cols=150 Identities=21% Similarity=0.265 Sum_probs=143.9
Q ss_pred CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 035802 1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNM 80 (174)
Q Consensus 1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (174)
++.|+++++||++|+||++++++..++++.+++.++++++++.+.+++++..++++++|+.+.+.+|+++...+.|+..+
T Consensus 72 l~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~ 151 (455)
T COG0534 72 LGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL 151 (455)
T ss_pred HHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH-cC-CCcchhHHHHHHHHHHHHHHHHHHHhhcCH
Q 035802 81 QSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA-VH-LRTKGLLLGLMSGSTVQAVALAVVTSLTNW 151 (174)
Q Consensus 81 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (174)
..++.+++||.||++.++.+.+++ .+.|+.++|+++++ ++ +|+.|+.+|+.+++.+..++..+++++++.
T Consensus 152 ~~~~~~~lr~~G~~~~~m~~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 152 SFVLSGILRGLGDTKTPMYILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999999999999999999999999 89999999999998 56 999999999999999999999988887764
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.90 E-value=2e-22 Score=162.52 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=138.4
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+.++++++||++|+||+|++++..++++.+++++++++.++...+.+++..+++.|||+.+.+.+|+++..++.|+..+.
T Consensus 66 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~ 145 (441)
T PRK10367 66 RMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLAN 145 (441)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL 148 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 148 (174)
.++.+++||.||++.++..++++ .+++++++|++.+..++|+.|+++++.+++.+..++..+++++
T Consensus 146 ~~~~~~lr~~G~~~~~~~~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 146 LVLLGWLLGVQYARAPVILLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHHHHHcccchHHHHHHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 7899999999999889999999999999999988877666654
No 7
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.90 E-value=1.9e-22 Score=163.16 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=134.7
Q ss_pred CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccC-chHHHHHHHHHHHHHHHHHHHHH
Q 035802 1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNS-DQDVVKYVSRLAPLLSIAIFMDN 79 (174)
Q Consensus 1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~-~~~~~~~~~~~l~~~~~~~~~~~ 79 (174)
++.|+++++||++|+||+|++|+..+.++.+++..+++++++++++++++.++|++ |||+.+.+.+++++..++.++++
T Consensus 290 i~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~ 369 (453)
T PRK09575 290 IAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDG 369 (453)
T ss_pred HHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999995 89999999999999999999999
Q ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802 80 MQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL 148 (174)
Q Consensus 80 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 148 (174)
++.+..+++||.||++.+++.++.. +++++|..|++.. .+|+.|+|+++.+++.+..++....+++
T Consensus 370 ~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 370 FLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887 6889999999854 3799999999999999988877766654
No 8
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=1e-21 Score=159.80 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=136.7
Q ss_pred CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhcc--CchHHHHHHHHHHHHHHHHHHHH
Q 035802 1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFN--SDQDVVKYVSRLAPLLSIAIFMD 78 (174)
Q Consensus 1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~~~~~~~~~~~~l~~~~~~~~~~ 78 (174)
+++|+++++||++|+||+|++++..++++.+++.++++.+++.+++++++..+|+ .|||+.+.+.+|+++..++.|+.
T Consensus 84 l~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~ 163 (478)
T PRK10189 84 IDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAA 163 (478)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999999995 69999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH----cCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802 79 NMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA----VHLRTKGLLLGLMSGSTVQAVALAVVTSL 148 (174)
Q Consensus 79 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 148 (174)
.+..++.+++||.||++.++.+++++ ++++++++|.+++. +++|+.|+|+++.+++.+..++..+++.+
T Consensus 164 ~~~~~~~~~lr~~G~~~~~~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 164 AITLIGSGALRGAGNTKIPLLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred HHHHHHHHHHHhcCchHHhHHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999997 89999999999875 37899999999999999988877665543
No 9
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=1.5e-21 Score=158.31 Aligned_cols=146 Identities=21% Similarity=0.132 Sum_probs=132.7
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+.|+++++||++|+||+|++++..+.++.++++++++..++.+ +.+++..+|+.|||+.+.+.+|+++..++.|+..+.
T Consensus 66 ~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~ 144 (464)
T PRK00187 66 IAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSF 144 (464)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999998887765 679999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH----cCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA----VHLRTKGLLLGLMSGSTVQAVALAVVTSLT 149 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 149 (174)
..+++++||.||++.+++.++++ .+++++.+|++++. +++|+.|+++++.+++....+....+++++
T Consensus 145 ~~~~~~l~~~g~~~~~~~~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 145 MALRGFTSALGRAGPVMVISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999 78899999999875 258999999999999888776665555543
No 10
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.89 E-value=1.3e-21 Score=158.27 Aligned_cols=147 Identities=14% Similarity=0.049 Sum_probs=139.4
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+.++++++||++|+||+|++++..++++.+++.+++++.++.+.+++++..+|+.|+|+.+.+.+|+++.+++.|+..+.
T Consensus 69 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~ 148 (453)
T PRK09575 69 GMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGA 148 (453)
T ss_pred hccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLT 149 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 149 (174)
..+.+++|+.|+++.+++.++.+ .+++++++|++++.+++|+.|+|+++.+++.+..++..++++++
T Consensus 149 ~~~~~~l~~~g~~~~~~~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 149 IALPFLLRNDESPNLATGLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHHHcCCChHHHHHHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999 79999999999988899999999999999999988877666543
No 11
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.86 E-value=6.7e-20 Score=148.31 Aligned_cols=148 Identities=17% Similarity=0.162 Sum_probs=137.8
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+.+.++++||++|++|+|++++..++++.+++.++++++++.+.+++++..+|+.|||+.+.+.+|+++.+++.|+..+.
T Consensus 68 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 147 (456)
T PRK01766 68 LLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLY 147 (456)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH----cCCCcchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA----VHLRTKGLLLGLMSGSTVQAVALAVVTSLTN 150 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 150 (174)
.++++++||.||++.++..++++ .++++++++++++. +.+|+.|+++++.+++.+..++..+++++++
T Consensus 148 ~~~~~~l~~~g~~~~~~~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 148 QVLRSFIDGLGKTKPTMVIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHHHHHcCCChHHHHHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999 68899999999764 4689999999999999999888877766543
No 12
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.84 E-value=1.3e-19 Score=146.11 Aligned_cols=145 Identities=15% Similarity=0.111 Sum_probs=119.6
Q ss_pred CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 035802 1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNM 80 (174)
Q Consensus 1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (174)
+++|+++++||++|+||+|++|+..+.+..++++++.+++++++.+++++..+|++|||+.+.+.+++++..+..+....
T Consensus 287 l~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~ 366 (441)
T PRK10367 287 FAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVW 366 (441)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999998876443334
Q ss_pred HHHHHHHHHhcC---cchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 035802 81 QSVLSGVARGIG---WQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQK 153 (174)
Q Consensus 81 ~~~~~~~l~g~g---~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
..+..++++|.+ |++.++++++++.|...++. +.+|+.|+|++..+++.++++++..++++ +|+|
T Consensus 367 ~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~-~~~~ 434 (441)
T PRK10367 367 CYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL-------PWLGNHGLWLALTVFLALRGLSLAAIWRR-HWRN 434 (441)
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH-------HHcCchHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 444444444444 59999999999976422222 24799999999999999998887765444 4744
No 13
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.80 E-value=7.4e-18 Score=131.31 Aligned_cols=146 Identities=21% Similarity=0.199 Sum_probs=136.1
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+++..+.++++.|++|+|++++..+....+.+.++++++++.+++++++..+++.|++..+.+.+++++++++.++..+.
T Consensus 49 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 128 (342)
T TIGR00797 49 GTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLN 128 (342)
T ss_pred HHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHH-HcC-CCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCF-AVH-LRTKGLLLGLMSGSTVQAVALAVVTSL 148 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~ 148 (174)
.+..+++|+.||++.++..++++ .+++++.++++.+ ..+ +|..|+++++.+++.+..++..++.++
T Consensus 129 ~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 129 FVLRGFLRGQGDTKTPMYITLIG-NVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHHHHHHhcCCchHHHHHHHHH-HHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998 6889999998876 566 789999999999999988887766664
No 14
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.78 E-value=1.1e-19 Score=127.42 Aligned_cols=114 Identities=25% Similarity=0.461 Sum_probs=111.2
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+.|.++++||++|++|+|++++..+.++.++.+++++++++.+++++++..+|++|+|+.+.+.+|+++..++.|+..+.
T Consensus 49 ~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (162)
T PF01554_consen 49 ATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALF 128 (162)
T ss_dssp HHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHH
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYV 115 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~ 115 (174)
.+..+++||.||++.++..++++.|++++|++|+
T Consensus 129 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 129 FVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 9999999999999999999999988999999885
No 15
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.72 E-value=2.6e-16 Score=128.56 Aligned_cols=145 Identities=13% Similarity=0.096 Sum_probs=133.0
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccC----chHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNS----DQDVVKYVSRLAPLLSIAIFM 77 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~l~~~~~~~~~ 77 (174)
+.+..|.+||+.|+||+|++++..+++..+...+++++++.++.+++++..+|.+ |+|..+.+..++++++++.++
T Consensus 280 ~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~ 359 (502)
T TIGR01695 280 STVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIF 359 (502)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999876 678888999999999999999
Q ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802 78 DNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLT 149 (174)
Q Consensus 78 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 149 (174)
.+++.++.+.+++.||++.++..++.+ .++++++++++.. .+|..|+|+++.+++.+..++..++.+|+
T Consensus 360 ~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 360 YSLQKVLLRAFYARKDTRTPFINSVIS-VVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998 6889999998854 47899999999999999988887766654
No 16
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.70 E-value=5e-18 Score=137.38 Aligned_cols=168 Identities=43% Similarity=0.697 Sum_probs=158.3
Q ss_pred CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 035802 1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNM 80 (174)
Q Consensus 1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (174)
++.|+++.+++.+|+++++++|.....+...++.++...+...+.+++.+.++|++|+|+.+...+..++++.+.+.++.
T Consensus 304 ~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~ 383 (473)
T KOG1347|consen 304 FSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNAL 383 (473)
T ss_pred hhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 035802 81 QSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRE 160 (174)
Q Consensus 81 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (174)
+.++.|+.+|.|..+....+++.++.++.+|....+.+..++|..|+|.+...+.......+.....+++|++..++.+.
T Consensus 384 q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~ 463 (473)
T KOG1347|consen 384 QAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFA 463 (473)
T ss_pred hhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999988889999999999999988888888888899999999999888
Q ss_pred hhccCCCC
Q 035802 161 RTLEGAPS 168 (174)
Q Consensus 161 ~~~~~~~~ 168 (174)
|..+....
T Consensus 464 ~~~~~~~~ 471 (473)
T KOG1347|consen 464 RIIASLVL 471 (473)
T ss_pred HHHhhccC
Confidence 87665543
No 17
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.69 E-value=2e-15 Score=122.86 Aligned_cols=143 Identities=14% Similarity=0.144 Sum_probs=130.0
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+.+..|.++|+.|+||+|++++..++...++..++.+.++.+..+++++..+|.++++ +.++++++++..++.+++
T Consensus 292 ~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~ 367 (488)
T TIGR02900 292 STALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFS 367 (488)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999887655 678899999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLT 149 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 149 (174)
.+..+++++.||++.++..++.+ .++++++++.+...+.+|+.|+|+++.+++.+..++..+..+|.
T Consensus 368 ~~~~~~l~~~g~~~~~~~~~~~~-~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 368 APLQSILQGLGKQKVALRNSLIG-AIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 78999999988655778999999999999999988888777653
No 18
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.42 E-value=1.4e-11 Score=100.45 Aligned_cols=143 Identities=20% Similarity=0.191 Sum_probs=115.5
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+.+....++|+.|++|+|++++..+.++.+.+..+++++++.+.+.+++...+.+|++. ..++++..+..++..+.
T Consensus 57 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~ 132 (488)
T TIGR02900 57 PVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALS 132 (488)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999998877777764 35678889999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH-----cCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA-----VHLRTKGLLLGLMSGSTVQAVALAVVTSLT 149 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~-----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 149 (174)
.+.++++||.+|.+..+..+.++ .++++.....+.+. .+.++.|..+++.++..+..++...+++++
T Consensus 133 ~~~~~~l~~~~~~~~~~~~~~i~-~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~ 204 (488)
T TIGR02900 133 SVLKGYFQGISNMKPPAYIQVIE-QIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK 204 (488)
T ss_pred HHHHHHHhhhccchHhHHHHHHH-HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 55665554444321 234566667777788877777665554443
No 19
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.41 E-value=1.7e-11 Score=99.49 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=131.0
Q ss_pred hhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccC----chHHHHHHHHHHHHHHHHHHHH
Q 035802 3 IFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNS----DQDVVKYVSRLAPLLSIAIFMD 78 (174)
Q Consensus 3 ~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~l~~~~~~~~~~ 78 (174)
+..-|..++...+||.++.++..++++.....+.++.++.++.+++++.+++.. |+|..+...+.++++++++|+.
T Consensus 256 tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~ 335 (451)
T PF03023_consen 256 TVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFY 335 (451)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 445577899999999999999999999999999999999999999999988762 6778888999999999999999
Q ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802 79 NMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLT 149 (174)
Q Consensus 79 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 149 (174)
+++.++...+.+.+|++.++..++++ .++++.+++++ .+.+|..|+.+++.++..+..++....++|+
T Consensus 336 ~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l--~~~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 336 ALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILL--VPFFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 88999999777 4468999999999999999988888777665
No 20
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.40 E-value=1e-11 Score=100.90 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=137.7
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+.+..|+.+|++|+++++......+++...-...+.++. .++.+.+++...+++||++...+..|.++..+..+..+..
T Consensus 85 ~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~-~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~ 163 (473)
T KOG1347|consen 85 QLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPIS-LLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVS 163 (473)
T ss_pred chhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHH
Confidence 567889999999999999999999999999999999998 6677889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTN 150 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 150 (174)
..+..++|+.++..+..++...+ ..++++++|++++..++|..|...+..+++.........+.....
T Consensus 164 ~~l~~~lq~Q~~~~~~~~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~ 231 (473)
T KOG1347|consen 164 FPLAKFLQAQSITLPLLVIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG 231 (473)
T ss_pred HHHHHHHHhccCchHHHHHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC
Confidence 99999999999999999999999 899999999999999999999999999999998888877765443
No 21
>PRK15099 O-antigen translocase; Provisional
Probab=99.40 E-value=9.5e-12 Score=99.78 Aligned_cols=138 Identities=14% Similarity=0.183 Sum_probs=113.8
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+++.+..++|+ ++|+|++++..+.++.+++..+++++++.+.+.+++...+.+||+ ...++.+..+..++..+.
T Consensus 59 ~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 132 (416)
T PRK15099 59 FNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD----YQGVVRAVALIQMGIAWA 132 (416)
T ss_pred cceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHHHHHH
Confidence 34556778888 789999999999999999999999999999999999998887776 245677777777788889
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL 148 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 148 (174)
....+++||.||++.++...+++ .++++.+ +++.+.. .|+.|+.+++.+++.+..+...+++++
T Consensus 133 ~~~~~~lr~~~~~~~~~~~~~~~-~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 133 NLLLAILKGFRDAAGNALSLIVG-SLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 6777766 4443332 499999999999999887766655544
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.32 E-value=1.6e-10 Score=94.50 Aligned_cols=141 Identities=13% Similarity=0.059 Sum_probs=111.3
Q ss_pred HhHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHH-HHHHHHHhchhhhchhcc--CchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 6 SIRVSNELGAGNP-QPARLATRVAVALAVAEAA-IVSIALFCSRYVLAYAFN--SDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 6 ~~~v~~~~G~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~lf~--~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+.++.+..|+++. |++++....++.+...++. ++.++.+++++++..++. .|+|..+.+.+|+++.+++.|+..+.
T Consensus 61 ~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~ 140 (502)
T TIGR01695 61 SAFVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLA 140 (502)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655 5888878777776665554 457788889999999883 47788899999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhH--HHHHHHHHHHHHHHHHHHhhc
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLL--LGLMSGSTVQAVALAVVTSLT 149 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~--~a~~~~~~~~~~~~~~~~~~~ 149 (174)
.+.++++|+.||.+.+++.+++.. ++.+...++ ...++|..|+. +++.+++.+..++..++++++
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~i~~~-i~~i~~~~~--~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 207 (502)
T TIGR01695 141 AVFGGILNARKRFFIPSFSPILFN-IGVILSLLF--FDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKA 207 (502)
T ss_pred HHHHHHHhccCeeHHHHHHHHHHH-HHHHHHHHH--HHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999984 455553333 35678888988 999999998887776665543
No 23
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.29 E-value=3.6e-10 Score=92.09 Aligned_cols=146 Identities=14% Similarity=0.026 Sum_probs=129.3
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccC----chHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNS----DQDVVKYVSRLAPLLSIAIFM 77 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~l~~~~~~~~~ 77 (174)
++..-|..|++..++|.++.++..++++.+++.++++.++.+..+++++.+.+.. +++......+.+..++.++++
T Consensus 289 ~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~ 368 (518)
T COG0728 289 STVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIP 368 (518)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHH
Confidence 3455678899999999999999999999999999999999999999999988753 567788889999999999999
Q ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802 78 DNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTN 150 (174)
Q Consensus 78 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 150 (174)
.++.-++...+.+.+|+|.|+.+.+++ .++++.+++.+ .+.+|..|+..+...+.++...+.++..+|+.
T Consensus 369 ~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 369 FALVKLLSRVFYAREDTKTPMKIAIIS-LVVNILLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHHHHHHHHHccCCCcChHHHHHH-HHHHHHHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999 89999999666 45678888999999988888777777666543
No 24
>PRK15099 O-antigen translocase; Provisional
Probab=99.19 E-value=9.8e-10 Score=88.17 Aligned_cols=138 Identities=11% Similarity=0.002 Sum_probs=113.5
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCch-HHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQ-DVVKYVSRLAPLLSIAIFMDNM 80 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~-~~~~~~~~~l~~~~~~~~~~~~ 80 (174)
+++..|.++|+ +|.|+.++..++.......++.++++.++++++++.++|.+|+ +. +.++++++.+..++...
T Consensus 273 ~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~---~~~~~~~l~~~~~l~~~ 346 (416)
T PRK15099 273 SVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTA---MRDLFAWQLVGDVLKVG 346 (416)
T ss_pred HHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH---HHHHHHHHHHHHHHHHH
Confidence 56788999995 6789999999999999999999999999999999999998865 21 56678887777777777
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802 81 QSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL 148 (174)
Q Consensus 81 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 148 (174)
...+...+-..++++......+.. .++++|+++++. +.+|..|+++++.+++.+..++......+
T Consensus 347 ~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 347 AYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666777777777777776 889999999985 45799999999999999998877766553
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.12 E-value=9.5e-09 Score=83.50 Aligned_cols=144 Identities=13% Similarity=0.057 Sum_probs=122.4
Q ss_pred hhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccC--chHHHHHHHHHHHHHHHHHHHHHH
Q 035802 3 IFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNS--DQDVVKYVSRLAPLLSIAIFMDNM 80 (174)
Q Consensus 3 ~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~~~~~~~~~~l~~~~~~~~~~~~ 80 (174)
.+..|.-.+.. +++.|++++..+....+...+.+.++++.+++++++..++.+ |+|..+.+.+.+++.++..++..+
T Consensus 35 ~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l 113 (451)
T PF03023_consen 35 AAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGL 113 (451)
T ss_pred HHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777787 889999999999999999999999999999999999999964 789999999999999999999999
Q ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCC---cchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802 81 QSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLR---TKGLLLGLMSGSTVQAVALAVVTSLTN 150 (174)
Q Consensus 81 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g---~~g~~~a~~~~~~~~~~~~~~~~~~~~ 150 (174)
..++.+++|+.++...+....++.+ +..+...+++ ....| +.++.+|+.++..+..++.....+|..
T Consensus 114 ~~i~~a~L~~~~~F~~~~~~~l~~N-~~~I~~~~~~--~~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~ 183 (451)
T PF03023_consen 114 SSIFSAILNAHRRFLIPALSPLLFN-LSIILSLLLL--SNSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFG 183 (451)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHH-HHHHHHHHHH--HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999998874 3334433333 33455 778889999999999888888777654
No 26
>PRK10459 colanic acid exporter; Provisional
Probab=98.94 E-value=1e-07 Score=78.04 Aligned_cols=133 Identities=9% Similarity=0.042 Sum_probs=111.7
Q ss_pred hHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 7 IRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSG 86 (174)
Q Consensus 7 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (174)
|..++. ++|.++.++..++.......+++++++.+..+++++..++.+++ ...+...++++++...+..+......
T Consensus 270 P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~ 345 (492)
T PRK10459 270 PVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGS 345 (492)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444553 67888999999999999999999999999999999987776543 34577889999999999999999999
Q ss_pred HHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 035802 87 VARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVT 146 (174)
Q Consensus 87 ~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~ 146 (174)
.+++.||++..+..+++. ..+.+|..+.+. ..+|..|+.+++.+++.+......+..
T Consensus 346 ~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~ 402 (492)
T PRK10459 346 LLLAKGRADLSFKWNVFK-TFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLM 402 (492)
T ss_pred HHHHcCccchhHHHHHHH-HHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888 677788776663 357999999999999988877777665
No 27
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.89 E-value=1.2e-07 Score=77.42 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=110.5
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+...-|..++...++|.++.++..++...+...++.+..+.+..+++++..++..++... +...+.++++..++..+.
T Consensus 270 ~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~--~~~~l~il~~~~~~~~~~ 347 (480)
T COG2244 270 NRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYAS--AAPILQLLALAGLFLSLV 347 (480)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccc--hhHHHHHHHHHHHHHHHH
Confidence 356678999999999999999999999999999999999999999999888777654322 677899999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHH
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGL 131 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~ 131 (174)
......+++.|+++..+..+.++ .+.++.+++.+. +..|+.|...++
T Consensus 348 ~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li--~~~g~~g~~~a~ 394 (480)
T COG2244 348 SLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLI--PRFGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHH--HhhhhhhHHHHH
Confidence 99999999999999999999999 788899988884 466888888888
No 28
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=98.70 E-value=5.7e-08 Score=75.71 Aligned_cols=70 Identities=30% Similarity=0.437 Sum_probs=66.4
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLL 71 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~ 71 (174)
+++..+.+++++|+||+|++++..+++..+.+.++.+.++.++++++++.++|++|||+.+.+..++++.
T Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 272 GIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5688899999999999999999999999999999999999999999999999999999999999988764
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.45 E-value=2.3e-05 Score=64.42 Aligned_cols=148 Identities=12% Similarity=0.043 Sum_probs=115.3
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhc-hhccC--chHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLA-YAFNS--DQDVVKYVSRLAPLLSIAIFMD 78 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~lf~~--~~~~~~~~~~~l~~~~~~~~~~ 78 (174)
+++-.|.-.++..+++.|++++...........+.+..+++..++++++. .++.. |++....+....+++.|+.++.
T Consensus 67 s~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~i 146 (518)
T COG0728 67 SSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFI 146 (518)
T ss_pred hhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 45667888888877777888888888887888888888889999999999 55555 3555557899999999999999
Q ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802 79 NMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTN 150 (174)
Q Consensus 79 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 150 (174)
++..+..++++..++...+.+.-++-+.. .+...+++....+....+..+++.++...+.++....++|..
T Consensus 147 sL~al~~aiLNs~~~F~~~a~aPvl~Nv~-~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g 217 (518)
T COG0728 147 SLSALFGAILNSRNRFFIPAFAPVLLNVS-VIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAG 217 (518)
T ss_pred HHHHHHHHHHhccCeechhhhhHHHHHHH-HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999998887433 333333332222223456778899999999999988887653
No 30
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.41 E-value=3.4e-06 Score=57.89 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 035802 68 APLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTS 147 (174)
Q Consensus 68 l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 147 (174)
+++++++.++..+......++++.||++..+..++.+ .++++++++.+ .+.+|..|+.+++.+++...........+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999 89999999999 45789999999999999999888887776
Q ss_pred hc
Q 035802 148 LT 149 (174)
Q Consensus 148 ~~ 149 (174)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 64
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.93 E-value=0.002 Score=47.68 Aligned_cols=122 Identities=21% Similarity=0.297 Sum_probs=80.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 035802 15 AGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQ 94 (174)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~ 94 (174)
++|.++.++..+.........++++.++.... ..++ ++++ ...++....+..++.......++.+++.+|.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 120 (251)
T PF13440_consen 50 ARDKQDIRSLLRFSLLVSLLLAVILAILAILI----AYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRF 120 (251)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 45666677777776666555555554432222 2233 4444 3345667778888999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 035802 95 HIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTS 147 (174)
Q Consensus 95 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 147 (174)
+......+.. ....+.....+.+ .+.+..+..++..++..+..+......+
T Consensus 121 ~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 121 RAYALIDIVR-SLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999888 4444444333333 3347778888888888877666555443
No 32
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.92 E-value=0.00029 Score=58.72 Aligned_cols=128 Identities=8% Similarity=-0.043 Sum_probs=101.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhH
Q 035802 18 PQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIG 97 (174)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 97 (174)
.+++.+.+...+.+...+++++..+.....+.++.++..+.=....+.+.++.+..+.|+.+++.+..++.++..+++-.
T Consensus 338 ~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l 417 (549)
T PF04506_consen 338 LKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQL 417 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHH
Confidence 46688888888899999998888888888888888876432222235778999999999999999999999999987643
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802 98 A----YINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL 148 (174)
Q Consensus 98 ~----~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 148 (174)
. ++... .++.+..+|++..+ ++|..|.-+|..+.+..+.+....++++
T Consensus 418 ~~~~~~m~~~--S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 418 DRYNYWMVVF--SAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33333 35667788888776 8999999999999999999888877654
No 33
>PRK10459 colanic acid exporter; Provisional
Probab=97.87 E-value=0.00048 Score=56.51 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 035802 22 RLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYIN 101 (174)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~ 101 (174)
++.......+....++++.++.+.+.+++..+++ +|+. ...+++.++..++..+.....+.+|+..+.+.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~ 148 (492)
T PRK10459 74 HLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE 148 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence 3455666777888888888888888888877654 4553 4567888888888899999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHH
Q 035802 102 LGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALA 143 (174)
Q Consensus 102 ~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~ 143 (174)
... .+........+. ..+.|..+..++..++..+..+...
T Consensus 149 ~~~-~i~~~~~~i~~~-~~~~g~~~l~~~~~~~~~~~~l~~~ 188 (492)
T PRK10459 149 ISA-VVAGFTFAVVSA-FFWPGALAAILGYLVNSSVRTLLFG 188 (492)
T ss_pred HHH-HHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHHH
Confidence 877 444555555443 3467888888888888877665443
No 34
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.75 E-value=0.0029 Score=47.23 Aligned_cols=71 Identities=24% Similarity=0.306 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802 76 FMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL 148 (174)
Q Consensus 76 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 148 (174)
++........+++|+.++.+.....++.. .+..+.....+.. .+.++.+...+..++..+..++.....+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 120 ILSSLSSVFSGLLQGLQRFKYIAISNIIS-SLLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999999999888 4555555555533 33447778888888888877777766654
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=0.01 Score=48.02 Aligned_cols=138 Identities=14% Similarity=0.040 Sum_probs=95.4
Q ss_pred HHHhhcCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 9 VSNELGAGN---PQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLS 85 (174)
Q Consensus 9 v~~~~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 85 (174)
-+|..-+++ .+++-.+....+.+...+++.++......++.+..+++...=....+...++++..+.|+.+++.+..
T Consensus 306 FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitE 385 (530)
T KOG2864|consen 306 FARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITE 385 (530)
T ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHH
Confidence 344444444 44555566666777777777776666667777777776432222225578999999999999999999
Q ss_pred HHHHhcCcchhHHHHH--HHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802 86 GVARGIGWQHIGAYIN--LGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL 148 (174)
Q Consensus 86 ~~l~g~g~~~~~~~~~--~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 148 (174)
+++.+.++.+..---+ ...+.++.+..+|++..+ +|..|.-.|..+.+.++.+....++++
T Consensus 386 aF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 386 AFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998876443211 112246678889999765 466999999999998887777665553
No 36
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=96.60 E-value=0.21 Score=40.89 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=61.4
Q ss_pred hhHHhHHHHhhcCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 3 IFCSIRVSNELGAGNPQPARLA-TRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 3 ~a~~~~v~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
.+....++++..+++....+.. ......+....+.+.........+. +++ ....+.......+.....
T Consensus 65 ~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~ 133 (480)
T COG2244 65 AAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------DPV----LALLLRILSLALLLLPLS 133 (480)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Chh----hHHHHHHHHHHHHHHHHH
Confidence 4555666666666665556665 5555555555544444444433332 344 456678899999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHH
Q 035802 82 SVLSGVARGIGWQHIGAYINLGA 104 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~ 104 (174)
....+++|+.++.+......+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~ 156 (480)
T COG2244 134 SVLRGLFQGFGRFGPLALSIVSS 156 (480)
T ss_pred HHHHHHHHHHhhcccchhHHHHH
Confidence 99999999999999999994433
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.34 E-value=0.35 Score=37.67 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=63.3
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHH-HHHHHHH-hchhhh-chhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 9 VSNELGAGNPQPARLATRVAVALAVAEAA-IVSIALF-CSRYVL-AYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLS 85 (174)
Q Consensus 9 v~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~i-~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 85 (174)
++-.++.++.+ |+....++..+.++.. +...+-+ -+++.+ -++++-||++.+.+...+.++....+++++.....
T Consensus 72 igl~~V~s~rs--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~q 149 (345)
T PF07260_consen 72 IGLVFVNSKRS--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQ 149 (345)
T ss_pred HHHHHhcchhh--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666533 4444333333333332 2222222 222332 36677899999999999999999999999999999
Q ss_pred HHHHhcCcchhHHHHHHHHHHHHHHHHHHHH
Q 035802 86 GVARGIGWQHIGAYINLGAFYLVGIPVAYVL 116 (174)
Q Consensus 86 ~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l 116 (174)
|++-=..++......++.. .+..+.....+
T Consensus 150 GILik~r~s~iV~~aSI~~-v~~qvV~v~~l 179 (345)
T PF07260_consen 150 GILIKHRHSWIVGSASIAD-VIAQVVLVAIL 179 (345)
T ss_pred hHhhhccceeEeehHHHHH-HHHHHHHHHHH
Confidence 9988555555555555444 33334333334
No 38
>COG4267 Predicted membrane protein [Function unknown]
Probab=93.74 E-value=3 Score=33.53 Aligned_cols=129 Identities=15% Similarity=0.098 Sum_probs=90.2
Q ss_pred hhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 3 IFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQS 82 (174)
Q Consensus 3 ~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (174)
...+..+|..+=+||++++.....-...+....+.+++.++++. .+|+.. .|-..........+..=
T Consensus 82 ~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~--------~~~~si-----~yk~l~~~~FV~m~~~W 148 (467)
T COG4267 82 LIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFV--------NNQYSI-----VYKILACALFVGMSLVW 148 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh--------cCchhH-----HHHHHHHHHHHHHHHHH
Confidence 34567788888888999999988888888888888887533211 223322 12222233334445555
Q ss_pred HHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802 83 VLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL 148 (174)
Q Consensus 83 ~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 148 (174)
....++.|+.|.+......+++ .++.+.+++++- +.++.|.-.+..++..+..+....++.+
T Consensus 149 i~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 149 ILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5678899999999999999999 777788877764 4588999999999988876666655443
No 39
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=78.71 E-value=27 Score=26.70 Aligned_cols=15 Identities=7% Similarity=-0.097 Sum_probs=8.7
Q ss_pred hhcCCCchHHHHHHH
Q 035802 12 ELGAGNPQPARLATR 26 (174)
Q Consensus 12 ~~G~~~~~~~~~~~~ 26 (174)
+.-++|+++.++.-.
T Consensus 127 ~ae~gn~k~i~~~~~ 141 (265)
T TIGR00822 127 AAKEANTAAISRLHV 141 (265)
T ss_pred HHHhCCHHHhHHHHH
Confidence 345667777765433
No 40
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=76.33 E-value=8.8 Score=23.65 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=23.2
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHHH
Q 035802 8 RVSNELGAGNPQPARLATRVAVALAVAEAAI 38 (174)
Q Consensus 8 ~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 38 (174)
-+-..+-+||+++|++..+++-.++.+-..+
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3456677899999999998888877554444
No 41
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=73.46 E-value=26 Score=26.01 Aligned_cols=62 Identities=3% Similarity=-0.102 Sum_probs=35.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCch---------HHHHHHHHHHHHHHHHHHHH
Q 035802 16 GNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQ---------DVVKYVSRLAPLLSIAIFMD 78 (174)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~---------~~~~~~~~~l~~~~~~~~~~ 78 (174)
.+++...+.+..++...+++..+++ ++++...+++.+|+-|. +..+-...++|+++...|-.
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~-lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~ 211 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFA-LVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYI 211 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-HHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHH
Confidence 3556666666666665555555555 55556777777777432 12223455666655555543
No 42
>PRK09546 zntB zinc transporter; Reviewed
Probab=70.75 E-value=20 Score=28.07 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcc--------hhHHHHHHHHHHHHHHHHHHHhhcCH
Q 035802 99 YINLGAFYLVGIPVAYVLCFAVHLRTK--------GLLLGLMSGSTVQAVALAVVTSLTNW 151 (174)
Q Consensus 99 ~~~~~~~~~~~i~~~~~l~~~~~~g~~--------g~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (174)
+.++++ ++.+|++.+-.. ++++.. ..|+....-.++.++..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGi-yGMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGL-FGVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhh-hccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445555 445677766543 233322 22333333444445556667777776
No 43
>PF14184 YrvL: Regulatory protein YrvL
Probab=70.74 E-value=30 Score=23.45 Aligned_cols=113 Identities=6% Similarity=0.074 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhchhccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Q 035802 25 TRVAVALAVAEAAIVSIALFCSRYVLAYAFNS-DQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLG 103 (174)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~ 103 (174)
.......++.+..++++ .++...-+.++++- -+.......-.+.....+.|++.+.-++.-.+.-. +.+......
T Consensus 4 ~~~~i~~~l~~~~v~a~-~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~---~~~~~~~~~ 79 (132)
T PF14184_consen 4 FIIFIIIALLLIIVFAI-YFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFL---RMSRRLFIL 79 (132)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCchHHHHH
Confidence 44455556666666663 55566667777763 23333444444555556777776666654444444 333333333
Q ss_pred HHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHH
Q 035802 104 AFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVA 141 (174)
Q Consensus 104 ~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~ 141 (174)
-...+....++...+.-+.=+.++|......-....+.
T Consensus 80 l~~~id~~~t~~~i~~aD~~m~sI~is~~~e~i~al~~ 117 (132)
T PF14184_consen 80 LAFIIDFLFTWITIYTADELMESISISTLSEIIFALLF 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeCcHHHHHHHHHH
Confidence 33556677777777765655777887776655554443
No 44
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=68.28 E-value=40 Score=23.91 Aligned_cols=135 Identities=13% Similarity=-0.029 Sum_probs=60.2
Q ss_pred hHHHHhhcCCCchHHH--HHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 7 IRVSNELGAGNPQPAR--LATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVL 84 (174)
Q Consensus 7 ~~v~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 84 (174)
+-|+|-+|.+..=..| .-.+.--.++......+++....||+++.....+.+.. .+....|++.-++.. +...+
T Consensus 33 SKISQlLGne~k~~vr~P~GLr~Wq~~sa~~f~~~~~m~L~FP~~~~~~vf~~~~~--~s~~~vRlyGgAL~s--~aLi~ 108 (179)
T PF14936_consen 33 SKISQLLGNEIKFAVREPRGLRLWQFLSAVYFTLVALMALVFPDQLYDHVFEEEPV--TSKLPVRLYGGALLS--IALIF 108 (179)
T ss_pred HHHHHHhcccceeeecCCCchhHHHHHHHHHHHHHHHHHHHccHHHHHhhcccccc--cceeeehhhhHHHHH--HHHHH
Confidence 3477888865432111 11222223344444456677788999988766654332 233344555444433 33334
Q ss_pred HHHHHhcCcc--hhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 035802 85 SGVARGIGWQ--HIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTS 147 (174)
Q Consensus 85 ~~~l~g~g~~--~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 147 (174)
-+.++...+. +.......+= ..+....+..- ...--.....+.-..++.....++..++++
T Consensus 109 w~~l~t~ek~iIrwtLL~ea~y-~~vq~~vtt~t-~~e~~~~s~~~~llLisr~lf~liS~yyYy 171 (179)
T PF14936_consen 109 WNALYTAEKAIIRWTLLSEACY-FGVQFLVTTAT-LAEMGWLSNAALLLLISRLLFALISMYYYY 171 (179)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHhcCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444443322 2222222222 12211111111 111111233455566666666666665554
No 45
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=61.73 E-value=73 Score=24.63 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCcc--------hhHHHHHHHHHHHHHHHHHHHhhcCH
Q 035802 95 HIGAYINLGAFYLVGIPVAYVLCFAVHLRTK--------GLLLGLMSGSTVQAVALAVVTSLTNW 151 (174)
Q Consensus 95 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~--------g~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (174)
+.--..++++ ++..|++.+-.. ++++.. ..|+......++.++..+++++|++|
T Consensus 256 ~~mk~LTvvt--~IflP~t~IaGi-yGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 256 EIMKILTVVS--TIFIPLTFIAGI-YGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHH-HhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333444444 445666665543 233322 22333444444445556667777777
No 46
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=59.56 E-value=92 Score=25.07 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=31.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchh
Q 035802 17 NPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYA 53 (174)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 53 (174)
+.++.+++.+++...++....+..++.....-|+...
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999998888888887763
No 47
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=56.90 E-value=87 Score=24.00 Aligned_cols=17 Identities=0% Similarity=-0.165 Sum_probs=9.6
Q ss_pred HhhcCCCchHHHHHHHH
Q 035802 11 NELGAGNPQPARLATRV 27 (174)
Q Consensus 11 ~~~G~~~~~~~~~~~~~ 27 (174)
++.-++|+++.++.-..
T Consensus 127 k~ae~gn~k~i~~~~~~ 143 (267)
T PRK09757 127 KCAKEADTAAFSRLNWT 143 (267)
T ss_pred HHHHhCCHHHhHHHHHH
Confidence 33456677777655443
No 48
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=56.45 E-value=17 Score=24.28 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=14.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 035802 124 TKGLLLGLMSGSTVQAVALAVVTSLTNWQK 153 (174)
Q Consensus 124 ~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
+.|+-+|++++-+...++..|.++|.+++.
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 345555666665554444455555544443
No 49
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=55.11 E-value=1e+02 Score=24.16 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCcc---------hhHHHHHHHHHHHHHHHHHHHhhcCH
Q 035802 96 IGAYINLGAFYLVGIPVAYVLCFAVHLRTK---------GLLLGLMSGSTVQAVALAVVTSLTNW 151 (174)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~---------g~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (174)
..-+.++++ ++.+|.+.+... ++++.. |.|++..+ .++.+++..++++|++|
T Consensus 261 imk~LTi~s--~iflPpTlIagi-yGMNf~~mPel~~~~Gy~~~l~~-m~~~~~~~~~~frrk~W 321 (322)
T COG0598 261 IMKILTIVS--TIFLPPTLITGF-YGMNFKGMPELDWPYGYPIALIL-MLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHHHHH--HHHHhhHHHHcc-cccCCCCCcCCCCcccHHHHHHH-HHHHHHHHHHHHHhcCc
Confidence 333444444 455666666643 233322 44444444 44445566677777777
No 50
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=54.60 E-value=60 Score=21.41 Aligned_cols=62 Identities=10% Similarity=-0.060 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 22 RLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSV 83 (174)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 83 (174)
|+..|..+.++....+.+++...+.|+.....++..+.......+..|.+.-.....++...
T Consensus 1 ~~~~~~~l~~~~l~~~~~Gl~~~~~p~~~~~~~~~~~~~~~~~~s~~R~~~G~~~g~Gl~~l 62 (124)
T PF14248_consen 1 KRILRIFLILSALVFIGIGLAYFLAPSSTAPWFGGVLANAAALDSEFRAYGGLYLGLGLLLL 62 (124)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCcHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888998888999998888875332223344556655444444443333
No 51
>PRK10739 putative antibiotic transporter; Provisional
Probab=54.41 E-value=82 Score=22.92 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=38.5
Q ss_pred HhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHH
Q 035802 6 SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAP 69 (174)
Q Consensus 6 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~ 69 (174)
.|+.-......+.++-|+..++....++ ++.++..++++.++++|+-+-+..+.+...+.
T Consensus 21 ipiflslt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fGIsl~afrIAGGilL 80 (197)
T PRK10739 21 LPIFMSVLKHLEPKRRRAIMIRELLIAL----LVMLVFLFAGEKILAFLNLRTETVSISGGIIL 80 (197)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444444445566666777776655555 44446678899999999987776666655443
No 52
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=49.43 E-value=14 Score=27.23 Aligned_cols=40 Identities=5% Similarity=-0.132 Sum_probs=24.0
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSI 41 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (174)
+.+.++++|+.+|+.+....++-...+..-.+..+.++..
T Consensus 126 GD~lAsiiG~~~G~~~~~~~~~KSleGSla~fi~~~l~~~ 165 (216)
T COG0170 126 GDGLASIIGKRYGRHKRILGNGKSLEGSLAFFIASFLVLL 165 (216)
T ss_pred hhHHHHHhCcccCccccccCCCCchhhhHHHHHHHHHHHH
Confidence 5688999999999864444444444444444444444443
No 53
>PRK11212 hypothetical protein; Provisional
Probab=48.72 E-value=1.1e+02 Score=22.61 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=15.8
Q ss_pred hHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 035802 7 IRVSNELGAGNPQPARLATRVAVALAVA 34 (174)
Q Consensus 7 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ 34 (174)
=++++.+|+ ++||+..+.++...+.
T Consensus 57 DIl~EvyG~---k~Ar~~V~~Gf~~~i~ 81 (210)
T PRK11212 57 DLTVRIFGA---PLARRIIFAVMLPALL 81 (210)
T ss_pred HHHHHHhCH---HHHHHHHHHHHHHHHH
Confidence 356777774 3477777766666554
No 54
>COG1738 yhhQ Uncharacterized member of the PurR regulon [General function prediction only]
Probab=48.50 E-value=1.1e+02 Score=22.88 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=45.7
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 8 RVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSG 86 (174)
Q Consensus 8 ~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (174)
++.+.+|++ .|||....++...+..+....+.+. +++ ......+++..+.-....|+...+.....+.+...-
T Consensus 71 ~~~e~yG~~---~Ark~V~~gf~~~lv~~~l~~~~~~-~~~--~~~~~~~~a~~~~f~~~~RI~lASl~AyivsQ~~Dv 143 (233)
T COG1738 71 LTVEIYGKK---EARKAVFLGFFSALVFSILTQIALH-FPP--SGSDEAQEALAALFSFVPRIALASLLAYIVSQLLDV 143 (233)
T ss_pred HHHHHhCHH---HHHHHHHHHHHHHHHHHHHHHHHHh-CCC--CcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 566777754 4777777777777777766664444 332 333334555555555667777777777777766643
No 55
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=47.71 E-value=1.4e+02 Score=23.54 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCcc---h-----hHHHHHHHHHHHHHHHHHHHhhcCH
Q 035802 95 HIGAYINLGAFYLVGIPVAYVLCFAVHLRTK---G-----LLLGLMSGSTVQAVALAVVTSLTNW 151 (174)
Q Consensus 95 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~---g-----~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (174)
...-+.++++ ++..|.+.+... ++++.. + .|+.......+.++..+++++|++|
T Consensus 254 ~~mk~lTv~s--~if~pptliagi-yGMNf~~mP~~~~~~g~~~~l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 254 RIIKIFSVVS--VVFLPPTLVASS-YGMNFEFMPELKWSFGYPGAIILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHH--HHHHHHHHHHhh-cccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3334444444 455666666543 233322 2 2222233333344445667777776
No 56
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=44.45 E-value=47 Score=20.79 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=19.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802 121 HLRTKGLLLGLMSGSTVQAVALAVVTSL 148 (174)
Q Consensus 121 ~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 148 (174)
++...|+|+..++..++..+++.+..++
T Consensus 29 ~~~~Lgm~~lvI~~iFil~VilwfvCC~ 56 (94)
T PF05393_consen 29 NWPNLGMWFLVICGIFILLVILWFVCCK 56 (94)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4455678999888888776666555443
No 57
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=43.35 E-value=54 Score=17.60 Aligned_cols=21 Identities=10% Similarity=-0.138 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 035802 127 LLLGLMSGSTVQAVALAVVTS 147 (174)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~ 147 (174)
+|.++.++.++.........+
T Consensus 7 VW~sYg~t~~~l~~l~~~~~~ 27 (46)
T PF04995_consen 7 VWSSYGVTALVLAGLIVWSLR 27 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677777766655444444333
No 58
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=42.53 E-value=1.1e+02 Score=20.88 Aligned_cols=71 Identities=10% Similarity=0.048 Sum_probs=34.8
Q ss_pred hHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 7 IRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLS 85 (174)
Q Consensus 7 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 85 (174)
-++++.+|+ +++|+....++...+...+...+...+=+.+ ..+++....-....|+...+.....+.+..+
T Consensus 15 Dii~E~yG~---~~a~~~i~~g~~~~~~~~~~~~~~~~lp~~~-----~~~~~~~~vf~~~~ri~~aS~~a~lisq~~d 85 (145)
T PF02592_consen 15 DIISEVYGK---KAARKAIWIGFLANLLFSLLIWIVILLPPAP-----FWQEAFESVFGPTPRIALASLIAFLISQLLD 85 (145)
T ss_pred HHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-----hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 456677763 4466666666666666644444333222222 1133444444445555555555444444443
No 59
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=41.63 E-value=92 Score=21.95 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=17.9
Q ss_pred HcCCCcchhHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 035802 119 AVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQK 153 (174)
Q Consensus 119 ~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
+...|+. |.+.+..++.++++++.+.+..|++
T Consensus 11 ~~~~~~~---~~t~~~~iInFliL~~lL~~~l~~p 42 (173)
T PRK13453 11 GAAGGVE---WGTVIVTVLTFIVLLALLKKFAWGP 42 (173)
T ss_pred HhhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344554 3455566666666666665555543
No 60
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=40.92 E-value=2e+02 Score=24.40 Aligned_cols=17 Identities=12% Similarity=-0.175 Sum_probs=8.9
Q ss_pred HHhcCcchhHHHHHHHH
Q 035802 88 ARGIGWQHIGAYINLGA 104 (174)
Q Consensus 88 l~g~g~~~~~~~~~~~~ 104 (174)
.++..+..+.....-++
T Consensus 202 ~k~~r~~~p~~L~~g~~ 218 (522)
T PF02652_consen 202 WKGVREVWPFALVAGLS 218 (522)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 56665555555444444
No 61
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=39.30 E-value=1.5e+02 Score=21.58 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=34.0
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHH
Q 035802 10 SNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLA 68 (174)
Q Consensus 10 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l 68 (174)
-..-...+.++-|+..++....++ ++.++..++++.++++|+-+-+..+.+...+
T Consensus 25 ~~lt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fgIsl~af~IaGGii 79 (203)
T PF01914_consen 25 LSLTKGMSPKERRRIARRASIIAF----IILLIFAFFGQLILNFFGISLPAFRIAGGII 79 (203)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 333344455555666666554444 4445666889999999997766655555444
No 62
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=39.14 E-value=2.1e+02 Score=23.54 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=14.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 035802 124 TKGLLLGLMSGSTVQAVALAVVT 146 (174)
Q Consensus 124 ~~g~~~a~~~~~~~~~~~~~~~~ 146 (174)
....|....+......+...+..
T Consensus 421 ~~~~~~~i~i~~~~~l~~l~~~~ 443 (468)
T TIGR00788 421 SNNLWLLILGHSLAPLLPLPLLH 443 (468)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 55577777777666655554443
No 63
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=38.16 E-value=68 Score=22.60 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=22.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 035802 122 LRTKGLLLGLMSGSTVQAVALAVVTSLTNWQK 153 (174)
Q Consensus 122 ~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
.|+.+.+++..+..++.++++++.+.+.-|++
T Consensus 11 ~~~~~~~~~~~~~~~i~Flil~~lL~~~l~kp 42 (175)
T PRK14472 11 GGLLSPNPGLIFWTAVTFVIVLLILKKIAWGP 42 (175)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45666777777777777777777776666654
No 64
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=37.37 E-value=1.2e+02 Score=20.07 Aligned_cols=29 Identities=3% Similarity=-0.036 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 035802 20 PARLATRVAVALAVAEAAIVSIALFCSRYV 49 (174)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (174)
+.|+..+. ...+..++..+.++...+..+
T Consensus 3 ~~k~~i~~-~~iGi~ig~~i~li~~~~~~~ 31 (136)
T PF11457_consen 3 IIKKIIKG-FLIGIGIGSFISLIISLFYGQ 31 (136)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 34455544 555566666655555544444
No 65
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=36.18 E-value=1.6e+02 Score=20.96 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 035802 106 YLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTS 147 (174)
Q Consensus 106 ~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 147 (174)
.++.....|++-....+.+..-++-..+....+...+.+.++
T Consensus 26 ~ivS~vPi~LF~~Ih~m~~~~~~I~f~i~t~~sayll~fAYk 67 (170)
T PF07074_consen 26 LIVSAVPIWLFWRIHQMDLYDSLIVFVIVTLVSAYLLAFAYK 67 (170)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 445556668876667777776666666666555555444443
No 66
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=35.06 E-value=76 Score=16.94 Aligned_cols=20 Identities=15% Similarity=-0.074 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 035802 127 LLLGLMSGSTVQAVALAVVT 146 (174)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~ 146 (174)
+|.++.++-+..........
T Consensus 8 VW~sYg~t~l~l~~li~~~~ 27 (45)
T TIGR03141 8 VWLAYGITALVLAGLILWSL 27 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777776665544333333
No 67
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=32.73 E-value=3.1e+02 Score=23.33 Aligned_cols=78 Identities=21% Similarity=0.087 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHH
Q 035802 60 VVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQA 139 (174)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~ 139 (174)
+-......+.+.....|+.....+- =.||..|..+...+.-.++.+-....+.+ .|-+.-..++..+..
T Consensus 178 is~~v~~~l~~~~~~iP~~lv~~~d--~~kgi~e~~p~~lvag~sfti~q~l~a~~---------lGPelPdIig~lvsl 246 (522)
T COG1620 178 ISAMVGRQLPILSLLIPFLLVFLMD--GWKGIKEVWPAILVAGLSFTIPQFLLANF---------LGPELPDIIGGLVSL 246 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHh---------cccccHHHHHHHHHH
Confidence 3334444444555555555444433 57888888888887777744332222222 233344555555555
Q ss_pred HHHHHHHhh
Q 035802 140 VALAVVTSL 148 (174)
Q Consensus 140 ~~~~~~~~~ 148 (174)
.+...+.++
T Consensus 247 ~i~~~flk~ 255 (522)
T COG1620 247 GILALFLKK 255 (522)
T ss_pred HHHHHHHHh
Confidence 555555554
No 68
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=32.66 E-value=1.3e+02 Score=18.83 Aligned_cols=45 Identities=18% Similarity=0.059 Sum_probs=31.4
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhc
Q 035802 10 SNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAF 54 (174)
Q Consensus 10 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf 54 (174)
=+.+|..+.+-.+.........++.-.+....+...+.+.+.+.+
T Consensus 33 l~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (121)
T PF02687_consen 33 LRALGASKRQIRKMFLYEALLIALIGILIGILLGILLIIFLINFL 77 (121)
T ss_pred HHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788898888888888887776666666555555555555543
No 69
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=32.35 E-value=2.4e+02 Score=21.90 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcC
Q 035802 96 IGAYINLGAFYLVGIPVAYVLCFAVH 121 (174)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~l~~~~~ 121 (174)
+..+.+.+...+.....++.+.+..+
T Consensus 224 ~Ga~~aai~~~i~~~~f~~Yv~~~~~ 249 (303)
T COG1295 224 PGALLAAILFELGKYLFGYYLSNFAN 249 (303)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444445555555554444
No 70
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=31.53 E-value=91 Score=16.78 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=4.8
Q ss_pred hHHHHHHHHHH
Q 035802 127 LLLGLMSGSTV 137 (174)
Q Consensus 127 ~~~a~~~~~~~ 137 (174)
+|++..+.+-+
T Consensus 19 ~~iGl~IyQki 29 (49)
T PF11044_consen 19 AWIGLSIYQKI 29 (49)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 71
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=31.23 E-value=3e+02 Score=22.68 Aligned_cols=49 Identities=12% Similarity=-0.050 Sum_probs=20.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH--hhcCHHHHHHHHHHhhccCCCCCCCC
Q 035802 124 TKGLLLGLMSGSTVQAVALAVVT--SLTNWQKQATMVRERTLEGAPSTENP 172 (174)
Q Consensus 124 ~~g~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (174)
+.-+|--.=+...+..+..+.-+ .++.-.+..++..++.+++..++.||
T Consensus 363 ~~~vW~~~Di~~~lmai~Nlial~lL~~~v~~~~~dy~~~~k~g~~P~f~~ 413 (416)
T PF01235_consen 363 LDLVWDLADIANGLMAIPNLIALLLLSKEVIKELKDYFKQRKEGKDPVFNP 413 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCccCC
Confidence 34456544444444444443322 22222233333344444554555554
No 72
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=30.89 E-value=3.2e+02 Score=22.80 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=51.8
Q ss_pred HHhhcCCCchHHHHHHHHHH---HHHHHHHHHHHHHHHhchhhhchhccC--chH-------HHHHHHHHHHHHHHHHHH
Q 035802 10 SNELGAGNPQPARLATRVAV---ALAVAEAAIVSIALFCSRYVLAYAFNS--DQD-------VVKYVSRLAPLLSIAIFM 77 (174)
Q Consensus 10 ~~~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~~-------~~~~~~~~l~~~~~~~~~ 77 (174)
+.++-+++..-+........ ..-+.+...+..+.+-+++.+...+.| ||. +.......+.=...+.+.
T Consensus 40 ~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~ 119 (448)
T COG2271 40 AFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFL 119 (448)
T ss_pred HHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHH
Confidence 34445555555555544444 223344444555677788888888876 332 223333334444557777
Q ss_pred HHHHHHHHHHHHhcCcch
Q 035802 78 DNMQSVLSGVARGIGWQH 95 (174)
Q Consensus 78 ~~~~~~~~~~l~g~g~~~ 95 (174)
..+...+++++||.|-+-
T Consensus 120 ~~~l~~lng~fQg~Gwpp 137 (448)
T COG2271 120 FAVLWVLNGWFQGMGWPP 137 (448)
T ss_pred HHHHHHHHHHHhcCCCcH
Confidence 788888999999999764
No 73
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=30.51 E-value=2.2e+02 Score=20.90 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=26.3
Q ss_pred chhHHhHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAG-NPQPARLATRVAVALAVAEAAIVSIALF 44 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (174)
+.+.+.++|+.+|++ .++--.+-...+..-+++.+.+.+.+..
T Consensus 142 gD~~A~l~G~~fGk~~~~~~sp~KT~EGsi~~~i~~~i~~~~~~ 185 (259)
T PF01148_consen 142 GDSFAYLVGRRFGKHLAPKISPKKTWEGSIAGFISSFIISFLLL 185 (259)
T ss_pred HHHHHHHHHHhcCCCcCCCCCCCCCHHHHhHHHHHHHHHHHHHH
Confidence 457789999999998 2222234455555555555555554443
No 74
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=30.12 E-value=1.2e+02 Score=18.67 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=3.5
Q ss_pred HhhcCHHHHHHHHHHhh
Q 035802 146 TSLTNWQKQATMVRERT 162 (174)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ 162 (174)
+++.+.+++.++.-+|.
T Consensus 30 Yrk~~rqrkId~li~RI 46 (81)
T PF00558_consen 30 YRKIKRQRKIDRLIERI 46 (81)
T ss_dssp ---------CHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 34444444444444444
No 75
>PRK10995 inner membrane protein; Provisional
Probab=30.07 E-value=2.3e+02 Score=20.90 Aligned_cols=58 Identities=12% Similarity=0.119 Sum_probs=34.6
Q ss_pred hHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHH
Q 035802 7 IRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLA 68 (174)
Q Consensus 7 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l 68 (174)
|+.-......+.++-|+..++....++. +.++..++.+.+++.|+-+.+..+.+...+
T Consensus 26 pif~~lt~~~~~~~r~~ia~~~~~~a~~----ill~f~~~G~~il~~fgIs~~a~rIaGGil 83 (221)
T PRK10995 26 ALFLGLSGNMTPEERNRQALMASVYVFA----IMMVAFYAGQLVMSTFGISIPGLRIAGGLI 83 (221)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333344444556666666665555444 444666788899999987665555544433
No 76
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=29.92 E-value=2.2e+02 Score=20.71 Aligned_cols=58 Identities=5% Similarity=-0.054 Sum_probs=34.8
Q ss_pred hHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHH
Q 035802 7 IRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLA 68 (174)
Q Consensus 7 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l 68 (174)
++.-......+.++-++..++....++. ..+.+.++++.++++|+-+-+..+.+...+
T Consensus 25 pvfl~lt~~~~~~~r~~ia~~~~l~a~~----ill~f~~~G~~iL~~fgIsl~afrIaGGii 82 (201)
T TIGR00427 25 PIFISLTEYYTAAERNKIAKKANISSFI----ILLIFLVFGDTILKLFGISIDAFRIAGGIL 82 (201)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3334444444555556666655544443 444666788999999997766555555443
No 77
>PTZ00370 STEVOR; Provisional
Probab=29.80 E-value=1.1e+02 Score=23.71 Aligned_cols=27 Identities=11% Similarity=-0.033 Sum_probs=16.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802 124 TKGLLLGLMSGSTVQAVALAVVTSLTN 150 (174)
Q Consensus 124 ~~g~~~a~~~~~~~~~~~~~~~~~~~~ 150 (174)
..|+..-+.+--.+..++++.|++|++
T Consensus 256 Pygiaalvllil~vvliilYiwlyrrR 282 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRRR 282 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666666666665543
No 78
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=29.70 E-value=47 Score=24.84 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=36.9
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALF 44 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (174)
+.+++..+|+.+|.-+++-+|+-...+-+-++..+++++.+.+
T Consensus 168 cDt~AdtvGRKfG~~tpk~aknKSlAGSIgaft~Gvf~c~vy~ 210 (269)
T KOG4453|consen 168 CDTIADTVGRKFGSTTPKYAKNKSLAGSIGAFTFGVFICIVYL 210 (269)
T ss_pred hhhHHHHHhhhccccCCCcCCCccccchHHHHHHHHHHHHHHH
Confidence 4567889999999999999999888888888888888887766
No 79
>PRK01637 hypothetical protein; Reviewed
Probab=28.74 E-value=2.7e+02 Score=21.32 Aligned_cols=8 Identities=0% Similarity=-0.479 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 035802 110 IPVAYVLC 117 (174)
Q Consensus 110 i~~~~~l~ 117 (174)
....+.+.
T Consensus 216 ~~~~~~f~ 223 (286)
T PRK01637 216 ELGKKGFA 223 (286)
T ss_pred HHHHHHHH
Confidence 33344443
No 80
>PRK11111 hypothetical protein; Provisional
Probab=26.66 E-value=2.6e+02 Score=20.57 Aligned_cols=49 Identities=10% Similarity=0.039 Sum_probs=30.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHH
Q 035802 16 GNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLA 68 (174)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l 68 (174)
.+.++-|+..+++...+ .++.++..+++++++++|+-+-+..+.+...+
T Consensus 37 ~s~~~r~~ia~~a~l~a----~~ill~f~~~G~~iL~~fGIsl~afrIaGGii 85 (214)
T PRK11111 37 QTAAERNKTNLTANLSV----AIILLISLFLGDFILNLFGISIDSFRIAGGIL 85 (214)
T ss_pred CCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34444555555544443 34444667889999999997766655555444
No 81
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=26.28 E-value=2.2e+02 Score=19.51 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=20.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 17 NPQPARLATRVAVALAVAEAAIVSIALF 44 (174)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (174)
|.++-++..++...+++.++++......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888888888776665
No 82
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.01 E-value=1.7e+02 Score=20.54 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=19.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 035802 122 LRTKGLLLGLMSGSTVQAVALAVVTSLTNWQK 153 (174)
Q Consensus 122 ~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
++....+.+..+..++.++++++.+++--|++
T Consensus 9 ~~~l~~~~~~~~~~~i~Flil~~iL~~~~~kp 40 (173)
T PRK13460 9 LSLLDVNPGLVVWTLVTFLVVVLVLKKFAWDV 40 (173)
T ss_pred CCccCCcHhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444555666666777777766666655553
No 83
>PRK00523 hypothetical protein; Provisional
Probab=25.97 E-value=1e+02 Score=18.55 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=12.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhc
Q 035802 125 KGLLLGLMSGSTVQAVALAVVTSLT 149 (174)
Q Consensus 125 ~g~~~a~~~~~~~~~~~~~~~~~~~ 149 (174)
.|+|+...+-.++..++.-+++-++
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiark 28 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556665555555555444444433
No 84
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=24.84 E-value=1.8e+02 Score=20.37 Aligned_cols=27 Identities=11% Similarity=-0.198 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHH
Q 035802 128 LLGLMSGSTVQAVALAVVTSLTNWQKQ 154 (174)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
|++..+..++.++++++++++.-|.+-
T Consensus 9 ~~sqifw~iI~FlILy~ll~kf~~ppI 35 (155)
T PRK06569 9 YYSQIFWLIVTFGLLYIFVYKFITPKA 35 (155)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 556677777777777777777666653
No 85
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=24.68 E-value=1.2e+02 Score=21.09 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccC
Q 035802 20 PARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNS 56 (174)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~ 56 (174)
+.|+.++..+.....+++...+.++.+..-+..++++
T Consensus 4 r~r~Rl~~il~~~a~l~~a~~l~Lyal~~ni~~fy~P 40 (153)
T COG2332 4 RRRKRLWIILAGLAGLALAVGLVLYALRSNIDYFYTP 40 (153)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccCceEEECH
Confidence 3466777777777888888888899888888887764
No 86
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.60 E-value=1.1e+02 Score=18.22 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=18.1
Q ss_pred HHHHHhchhhhchhccCchHHHHHHH
Q 035802 40 SIALFCSRYVLAYAFNSDQDVVKYVS 65 (174)
Q Consensus 40 ~~~~~~~~~~i~~lf~~~~~~~~~~~ 65 (174)
..-+++..+++-+-+.+||.+-+.+.
T Consensus 19 ~~G~fiark~~~k~lk~NPpine~~i 44 (71)
T COG3763 19 IGGFFIARKQMKKQLKDNPPINEEMI 44 (71)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHH
Confidence 33466777888888888887655553
No 87
>PRK10484 putative transporter; Provisional
Probab=24.02 E-value=4.4e+02 Score=22.18 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=19.5
Q ss_pred hHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 035802 7 IRVSNELGAGNPQPARLATRVAVALAVA 34 (174)
Q Consensus 7 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ 34 (174)
..+-+.+.+||.+++||....+..+.+.
T Consensus 262 ~~~qR~~aak~~k~a~~~~~~~~~~~~~ 289 (523)
T PRK10484 262 SIVQRALGAKNLAEGQKGALLAAFFKLL 289 (523)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3455777999999999877665544433
No 88
>TIGR00697 conserved hypothetical integral membrane protein. All known members of this family are proteins or 210-250 amino acids in length. Conserved regions of hydrophobicity suggest that all members of the family are integral membrane proteins.
Probab=23.94 E-value=2.9e+02 Score=20.11 Aligned_cols=74 Identities=15% Similarity=0.081 Sum_probs=37.4
Q ss_pred HhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 6 SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLS 85 (174)
Q Consensus 6 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 85 (174)
+=++++.+|+ +++|+..+.++...+...+...+...+ ++ ..-..++++....-....|+...+.......+..+
T Consensus 46 ~Dii~E~yG~---~~A~~~V~~gf~~~i~~~~~~~~~~~l-pp--~~~~~~~~af~~vf~~~~ri~~aS~~Aylisq~~d 119 (202)
T TIGR00697 46 TDVLREIYGK---KDARKAIFVGFISALLFSVLTQLHLFF-IP--SPGDESQTHFEALFSSSPRIALASLVAYIVSQLLD 119 (202)
T ss_pred HHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHhC-CC--CCChhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3456777774 347777776666666666555544432 22 11112233333333444466655555555554444
No 89
>TIGR02896 spore_III_AF stage III sporulation protein AF. This family represents the stage III sporulation protein AF of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of this protein is poorly conserved, so only the N-terminal region, which includes two predicted transmembrane domains, is included in the seed alignment.
Probab=23.88 E-value=1.6e+02 Score=19.14 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=13.1
Q ss_pred chhhhchhccCchHHHHHH
Q 035802 46 SRYVLAYAFNSDQDVVKYV 64 (174)
Q Consensus 46 ~~~~i~~lf~~~~~~~~~~ 64 (174)
.-.|+.++|+.|+++....
T Consensus 45 il~Pi~~l~~~~~~~~~~~ 63 (106)
T TIGR02896 45 ILNPIIKLLTTDPNIDIYV 63 (106)
T ss_pred HHHHHHHHhCCChhHHHHH
Confidence 4478888888887755443
No 90
>PHA03093 EEV glycoprotein; Provisional
Probab=23.66 E-value=1.1e+02 Score=21.92 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=25.6
Q ss_pred HhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 6 SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALF 44 (174)
Q Consensus 6 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (174)
+++=|.-+-+++-.+-+|.+...++++++++++..+.+.
T Consensus 16 sTiYG~klkkk~~~kk~r~i~i~~RisiiiSIlsL~~i~ 54 (185)
T PHA03093 16 STIYGDKLKKKKNKKKVKCIGICIRISIIISILSLIAIT 54 (185)
T ss_pred eeeechhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554555567888888888888888776554443
No 91
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=23.59 E-value=95 Score=14.35 Aligned_cols=19 Identities=26% Similarity=0.107 Sum_probs=14.2
Q ss_pred hcCCCchHHHHHHHHHHHH
Q 035802 13 LGAGNPQPARLATRVAVAL 31 (174)
Q Consensus 13 ~G~~~~~~~~~~~~~~~~~ 31 (174)
+..+++++|++...+++.+
T Consensus 12 ~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 12 YQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHTT-HHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 4578999999999887653
No 92
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=22.67 E-value=1.6e+02 Score=21.52 Aligned_cols=26 Identities=4% Similarity=-0.136 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHH
Q 035802 128 LLGLMSGSTVQAVALAVVTSLTNWQK 153 (174)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
|.+..+..++.++++++++.+..|.+
T Consensus 52 ~~~~l~w~~I~FliL~~lL~k~~~~p 77 (204)
T PRK09174 52 YASQLLWLAITFGLFYLFMSRVILPR 77 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777766666654
No 93
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=22.41 E-value=1.3e+02 Score=25.27 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=47.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 16 GNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVAR 89 (174)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 89 (174)
.|+-+.|---|+-++.+....+.+.+.++.++..+...+.+|++-...-......+.-.-++|.-++++.+=.|
T Consensus 91 SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r 164 (498)
T KOG0637|consen 91 SDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR 164 (498)
T ss_pred ccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH
Confidence 35555666666777888888888888999999999999999887522223333333334444544444444333
No 94
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=22.02 E-value=1.1e+02 Score=14.75 Aligned_cols=29 Identities=10% Similarity=-0.078 Sum_probs=19.6
Q ss_pred hHHhHHHHhhcCCCchHHHHHHHHHHHHH
Q 035802 4 FCSIRVSNELGAGNPQPARLATRVAVALA 32 (174)
Q Consensus 4 a~~~~v~~~~G~~~~~~~~~~~~~~~~~~ 32 (174)
+..-+..-....+++++|.+....++.+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 34445555667889999999998876543
No 95
>PF05197 TRIC: TRIC channel; InterPro: IPR007866 TRIC (trimeric intracellular cation) channels are differentially expressed in intracellular stores in animal cell types. TRIC subtypes contain three proposed transmembrane segments, and form homo-trimers with a bullet-like structure. Electrophysiological measurements with purified TRIC preparations identify a monovalent cation-selective channel []. ; GO: 0005261 cation channel activity, 0015672 monovalent inorganic cation transport, 0016020 membrane
Probab=21.84 E-value=3.3e+02 Score=19.92 Aligned_cols=41 Identities=12% Similarity=-0.070 Sum_probs=30.4
Q ss_pred HhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 44 FCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSG 86 (174)
Q Consensus 44 ~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (174)
++.+++....|.+++++.. ....|++..+.|+|...-....
T Consensus 35 lLlG~p~l~~l~n~~~vll--at~iWylify~P~Dl~~k~~~~ 75 (197)
T PF05197_consen 35 LLLGEPPLAPLANNTDVLL--ATAIWYLIFYCPFDLFYKLASF 75 (197)
T ss_pred HHhCCCchhHHhCCChHHH--HHHHHHHHHhCccHHHHHHHhc
Confidence 4567888888888877654 4467888889999988766543
No 96
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=21.57 E-value=3.9e+02 Score=20.75 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCcch
Q 035802 73 IAIFMDNMQSVLSGVARGIGWQH 95 (174)
Q Consensus 73 ~~~~~~~~~~~~~~~l~g~g~~~ 95 (174)
.+.|+..+..++-+..-+....+
T Consensus 276 ~~~p~~~l~~~lla~~l~~~~~r 298 (354)
T PF03739_consen 276 IALPLSCLILVLLALPLGIRFPR 298 (354)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 33455555555555544444433
No 97
>PF14851 FAM176: FAM176 family
Probab=21.29 E-value=2.8e+02 Score=19.37 Aligned_cols=41 Identities=10% Similarity=-0.026 Sum_probs=32.0
Q ss_pred HhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035802 6 SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCS 46 (174)
Q Consensus 6 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (174)
+.+-++++=+++++++.-++-.++-.++++.+.+.++-..+
T Consensus 7 nsLaaya~I~~~PE~~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 7 NSLAAYAHIRDNPERFALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 45667777789999999988888888888777777666655
No 98
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.99 E-value=2.5e+02 Score=19.04 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCHHHH
Q 035802 130 GLMSGSTVQAVALAVVTSLTNWQKQ 154 (174)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
.+.+..++.++++++.+.+.-|.+.
T Consensus 8 ~~~~~qli~Flil~~~l~kfl~kPi 32 (141)
T PRK08476 8 YLMLATFVVFLLLIVILNSWLYKPL 32 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666555543
No 99
>PRK01844 hypothetical protein; Provisional
Probab=20.99 E-value=2e+02 Score=17.27 Aligned_cols=22 Identities=23% Similarity=0.040 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 035802 126 GLLLGLMSGSTVQAVALAVVTS 147 (174)
Q Consensus 126 g~~~a~~~~~~~~~~~~~~~~~ 147 (174)
|+|+...+-.++..++.-+++-
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333333333
No 100
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=20.78 E-value=4.5e+02 Score=21.67 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=18.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802 120 VHLRTKGLLLGLMSGSTVQAVALAVVTSLTN 150 (174)
Q Consensus 120 ~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 150 (174)
++-+..|.-.++.++..++.++....+...+
T Consensus 309 pkg~~~~~i~gV~~aa~VSFvvssliLk~~k 339 (472)
T COG2213 309 PKGAYLGVIAGVLVAALVSFVVSSLILKTSK 339 (472)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444456666666777777666666665444
No 101
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=20.02 E-value=5.6e+02 Score=21.96 Aligned_cols=26 Identities=8% Similarity=0.073 Sum_probs=18.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802 124 TKGLLLGLMSGSTVQAVALAVVTSLT 149 (174)
Q Consensus 124 ~~g~~~a~~~~~~~~~~~~~~~~~~~ 149 (174)
.+|-|+-..++..+..++..+..-+.
T Consensus 409 ~~GGW~pl~ia~~l~~iM~tW~~G~~ 434 (534)
T PF02705_consen 409 PHGGWFPLLIAAVLFTIMYTWRRGRK 434 (534)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999888776665554433
Done!