Query 035802
Match_columns 174
No_of_seqs 131 out of 1588
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 10:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.8 2.9E-21 9.8E-26 154.2 9.6 149 2-150 294-447 (460)
2 3mkt_A Multi antimicrobial ext 99.7 1.1E-16 3.7E-21 127.7 10.6 146 2-149 68-217 (460)
3 4ev6_A Magnesium transport pro 70.6 32 0.0011 25.9 10.8 49 99-151 281-338 (339)
4 2knc_B Integrin beta-3; transm 59.4 17 0.00057 21.4 4.1 18 124-141 10-27 (79)
5 2iub_A CORA, divalent cation t 56.7 48 0.0017 25.2 7.5 18 134-151 345-362 (363)
6 2jek_A RV1873; structural geno 20.3 1.9E+02 0.0066 19.0 5.4 90 8-100 52-142 (145)
7 4aps_A DI-OR tripeptide H+ sym 19.0 3.1E+02 0.011 20.8 9.9 14 120-133 446-459 (491)
8 2qjy_A Cytochrome B; cytochrom 14.6 4.5E+02 0.016 20.8 11.8 73 68-141 96-170 (445)
9 1ug2_A 2610100B20RIK gene prod 12.4 2.6E+02 0.009 16.8 3.3 25 7-31 59-83 (95)
10 2zxe_G FXYD10, phospholemman-l 11.2 2.3E+02 0.0079 16.3 2.7 42 130-171 23-64 (74)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.85 E-value=2.9e-21 Score=154.23 Aligned_cols=149 Identities=26% Similarity=0.346 Sum_probs=139.7
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+++..|.+++++|+||+|++++..+.+..+++.+++++++.++++++++..+|++|+++.+.+.+++++++++.++++++
T Consensus 294 ~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 373 (460)
T 3mkt_A 294 GAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQ 373 (460)
T ss_dssp HHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH----cC-CCcchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA----VH-LRTKGLLLGLMSGSTVQAVALAVVTSLTN 150 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 150 (174)
.+..++++|.||++.++..++++.+++++|+++++... ++ +|+.|+|+++.+++.+..++..+.++|..
T Consensus 374 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 374 VVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999789999999999876 66 99999999999999998887766655543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.69 E-value=1.1e-16 Score=127.67 Aligned_cols=146 Identities=11% Similarity=0.104 Sum_probs=134.2
Q ss_pred chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ 81 (174)
Q Consensus 2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 81 (174)
+.+..+.++|++|++|+|++++..+.++.+.+.++++++++ +.+.+++..+++.|++..+.+..|+++.+++.++..+.
T Consensus 68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 146 (460)
T 3mkt_A 68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLF 146 (460)
T ss_dssp HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999998865 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH----cCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802 82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA----VHLRTKGLLLGLMSGSTVQAVALAVVTSLT 149 (174)
Q Consensus 82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 149 (174)
.++.+++||.||++.++..++++ .++++++++++.+. +++|+.|+.+++.+++.+..++...+++++
T Consensus 147 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 147 QALRSFTDGMSLTKPAMVIGFIG-LLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHTTTTCTTSCCTTTHHHHHHH-HHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCcHHHHHHHHHH-HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999 78999999999764 379999999999999999988877776654
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=70.64 E-value=32 Score=25.95 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcc---------hhHHHHHHHHHHHHHHHHHHHhhcCH
Q 035802 99 YINLGAFYLVGIPVAYVLCFAVHLRTK---------GLLLGLMSGSTVQAVALAVVTSLTNW 151 (174)
Q Consensus 99 ~~~~~~~~~~~i~~~~~l~~~~~~g~~---------g~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (174)
..++++ ++.+|++.+-.. +++++. |.|+. ....++.+++.+++++|++|
T Consensus 281 ~LTiit--~IflP~T~IaGi-yGMNf~~mPel~~~~gy~~~-l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 281 ILTMVT--TIFAVPMWITGI-YGMNFSYLPLANNPQGFWLV-MALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHH--HHSSHHHHHHHH-TTCCCSCCTTSSCTTHHHHH-HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--HHHHHHHHHHhh-ccCcCCCCCCccCchHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 344444 455677776643 344322 33443 34445556666677777777
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=59.44 E-value=17 Score=21.42 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=7.6
Q ss_pred cchhHHHHHHHHHHHHHH
Q 035802 124 TKGLLLGLMSGSTVQAVA 141 (174)
Q Consensus 124 ~~g~~~a~~~~~~~~~~~ 141 (174)
+.++-.+++.+-++..++
T Consensus 10 ~~~Iv~gvi~gilliGll 27 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLA 27 (79)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 334444444444433333
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=56.65 E-value=48 Score=25.20 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhcCH
Q 035802 134 GSTVQAVALAVVTSLTNW 151 (174)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ 151 (174)
..++.++..+++++|++|
T Consensus 345 ~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 345 VMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 344445556666777777
No 6
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=20.30 E-value=1.9e+02 Score=19.00 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=58.5
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 035802 8 RVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIF-MDNMQSVLSG 86 (174)
Q Consensus 8 ~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~ 86 (174)
-.++.+|-.+.++|+.++..-+.-.=..-+.-. ++-.-....-.+|+..++. ..-.. +-+++-..+ -..+..++..
T Consensus 52 ~~A~~YgI~sl~EA~AYL~hpvLg~RL~e~~~~-ll~~~~~sa~~IfG~~D~~-KlrSs-MTLFa~a~~~~~~F~~vL~~ 128 (145)
T 2jek_A 52 PLAVRYGISSLEEAQAYLQHDLLGPRLHECTGL-VNQVQGRSIEEIFGPPDDL-KLCSS-MTLFARATDANQDFVALLAK 128 (145)
T ss_dssp HHHHHTSBCSHHHHHHHHHSTTHHHHHHHHHHH-HHHCCSCCHHHHSCTTHHH-HHHHH-HHHHHHHCSCCHHHHHHHHH
T ss_pred hhhhHhccCCHHHHHHHHcChHHHHHHHHHHHH-HHhccCCCHHHHcCChhHH-HHHhH-HHHHHHcCCCchHHHHHHHH
Confidence 358999999999999999887666555555443 4445667888889874432 22222 222222222 2467788899
Q ss_pred HHHhcCcchhHHHH
Q 035802 87 VARGIGWQHIGAYI 100 (174)
Q Consensus 87 ~l~g~g~~~~~~~~ 100 (174)
++.|..|....-..
T Consensus 129 ~f~G~~D~~Tl~~L 142 (145)
T 2jek_A 129 YYGGGEDRRTVALL 142 (145)
T ss_dssp HSTTCCCHHHHHHH
T ss_pred HcCCCCCHHHHHHh
Confidence 99999888765443
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=18.98 E-value=3.1e+02 Score=20.82 Aligned_cols=14 Identities=0% Similarity=-0.337 Sum_probs=5.7
Q ss_pred cCCCcchhHHHHHH
Q 035802 120 VHLRTKGLLLGLMS 133 (174)
Q Consensus 120 ~~~g~~g~~~a~~~ 133 (174)
.+.+....+.....
T Consensus 446 ~~~~~~~~~~~~~~ 459 (491)
T 4aps_A 446 NAKSEVAYFSYFGL 459 (491)
T ss_dssp GGSSTTHHHHHTHH
T ss_pred hcccHHHHHHHHHH
Confidence 33444444443333
No 8
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=14.64 E-value=4.5e+02 Score=20.77 Aligned_cols=73 Identities=7% Similarity=-0.017 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCc-chhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHH
Q 035802 68 APLLSIAIFMDNMQSV-LSGVARGIGW-QHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVA 141 (174)
Q Consensus 68 l~~~~~~~~~~~~~~~-~~~~l~g~g~-~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~ 141 (174)
+.....+.++.++... .++++.|.=+ ++...+..-+. ..+-.-...++.|.+.+|-...|.++++.++..++-
T Consensus 96 ~H~~gAs~ffi~iylHi~RglyygsY~~Pr~~~W~~Gv~-l~ll~m~taF~GYvLPwgQmSfWgatVITnLlsaIP 170 (445)
T 2qjy_A 96 LHANGASLFFIAVYLHIFRGLYYGSYKAPREVTWIVGML-IYLAMMATAFMGYVLPWGQMSFWGATVITGLFGAIP 170 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH-HHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCccceeeehHH-HHHHHHHHHHHheeccCCccchHHHHHHHHHHHHhh
Confidence 4445555555555544 4666665443 46666666555 333444556667888999999999999998877653
No 9
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=12.36 E-value=2.6e+02 Score=16.85 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=0.0
Q ss_pred hHHHHhhcCCCchHHHHHHHHHHHH
Q 035802 7 IRVSNELGAGNPQPARLATRVAVAL 31 (174)
Q Consensus 7 ~~v~~~~G~~~~~~~~~~~~~~~~~ 31 (174)
..+++.+|.+..+++++.++..+.+
T Consensus 59 a~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 59 SVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHH
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=11.22 E-value=2.3e+02 Score=16.27 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhhccCCCCCCC
Q 035802 130 GLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTEN 171 (174)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (174)
|.+++.++..+..++.+.++-+.+...+.+.+..++....++
T Consensus 23 GLifA~vLfi~GI~iilS~kcrCk~~qk~~~~p~d~~a~~~~ 64 (74)
T 2zxe_G 23 GLIVAAVLCVIGIIILLAGKCRCKFNQNKRTRSNSGTATAQH 64 (74)
T ss_dssp HHHHHHHHHHHHHHHHTTTC----------------------
T ss_pred cchhHHHHHHHHHHHHHcCccccCCCCCCCCCCCcccccccc
Done!