Query 035802
Match_columns 174
No_of_seqs 131 out of 1588
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 10:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035802.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035802hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jeka1 a.255.1.1 (A:6-145) Hy 15.4 1.2E+02 0.0088 18.3 5.0 91 7-100 46-137 (140)
2 d1oedc_ f.36.1.1 (C:) Acetylch 15.1 1.5E+02 0.011 19.1 10.7 55 91-145 29-84 (260)
3 d1v54l_ f.23.6.1 (L:) Mitochon 14.0 74 0.0054 15.1 2.5 30 22-51 15-44 (46)
4 d2iuba2 f.17.3.1 (A:286-349) M 13.4 87 0.0064 15.7 2.9 10 107-116 14-23 (64)
5 d1nekc_ f.21.2.2 (C:) Succinat 12.5 1.2E+02 0.009 17.6 3.8 25 18-42 103-127 (129)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 9.7 2.5E+02 0.019 18.8 11.6 24 120-143 405-428 (447)
7 d2yvxa3 f.57.1.1 (A:276-448) M 9.7 2.1E+02 0.015 17.7 5.6 39 6-44 60-100 (173)
8 d2fyuk1 f.23.15.1 (K:1-53) Sub 9.5 53 0.0039 16.3 0.9 28 9-36 2-29 (53)
9 d2r6gg1 f.58.1.1 (G:7-296) Mal 8.8 1.5E+02 0.011 19.4 3.6 51 9-59 185-235 (290)
10 d1oede_ f.36.1.1 (E:) Acetylch 8.4 2.5E+02 0.019 17.8 9.6 74 70-144 8-84 (260)
No 1
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.36 E-value=1.2e+02 Score=18.29 Aligned_cols=91 Identities=12% Similarity=0.037 Sum_probs=58.4
Q ss_pred hHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 035802 7 IRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIF-MDNMQSVLS 85 (174)
Q Consensus 7 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~ 85 (174)
+-.++.+|-++.++|+.++..=+.-.=..-+.-. +.-.-......+|+..++ ...-.... ++....+ -..+..++.
T Consensus 46 S~~a~~YaI~sl~EA~AYL~HPvLG~RL~ec~~~-ll~~~~~s~~~IfG~~D~-lKlrSsmT-LF~~a~~~~~~F~~~L~ 122 (140)
T d2jeka1 46 SPLAVRYGISSLEEAQAYLQHDLLGPRLHECTGL-VNQVQGRSIEEIFGPPDD-LKLCSSMT-LFARATDANQDFVALLA 122 (140)
T ss_dssp SHHHHHTSBCSHHHHHHHHHSTTHHHHHHHHHHH-HHHCCSCCHHHHSCTTHH-HHHHHHHH-HHHHHCSCCHHHHHHHH
T ss_pred CHHHHHhccCCHHHHHHHHhChHhHHHHHHHHHH-HHHccCCCHHHHCCChhH-HHHHhHHH-HHHHhCCCchHHHHHHH
Confidence 3468999999999999999876665555555533 455677788888887433 22222222 2222212 225678888
Q ss_pred HHHHhcCcchhHHHH
Q 035802 86 GVARGIGWQHIGAYI 100 (174)
Q Consensus 86 ~~l~g~g~~~~~~~~ 100 (174)
.++.|..|.+..-..
T Consensus 123 ~~f~G~~d~~Tl~~L 137 (140)
T d2jeka1 123 KYYGGGEDRRTVALL 137 (140)
T ss_dssp HHSTTCCCHHHHHHH
T ss_pred HHhCCCCCHHHHHHH
Confidence 999998888765544
No 2
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=15.13 E-value=1.5e+02 Score=19.09 Aligned_cols=55 Identities=13% Similarity=-0.057 Sum_probs=27.9
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHH-cCCCcchhHHHHHHHHHHHHHHHHHH
Q 035802 91 IGWQHIGAYINLGAFYLVGIPVAYVLCFA-VHLRTKGLLLGLMSGSTVQAVALAVV 145 (174)
Q Consensus 91 ~g~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~~g~~g~~~a~~~~~~~~~~~~~~~ 145 (174)
.|+-...-+..+++..++.....=.+... ...++.|.|+.........+++...+
T Consensus 29 ~~~r~~l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~~~t~~ 84 (260)
T d1oedc_ 29 SGEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIVNCGI 84 (260)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 34433333444444333333333333322 24677888888777766655555433
No 3
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.00 E-value=74 Score=15.15 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhhc
Q 035802 22 RLATRVAVALAVAEAAIVSIALFCSRYVLA 51 (174)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 51 (174)
..-.+....+++.++.-++..+++...+++
T Consensus 15 ~Nk~rLla~m~~~fGsgfa~PF~ivRhqLl 44 (46)
T d1v54l_ 15 ENKWRLLAMMTLFFGSGFAAPFFIVRHQLL 44 (46)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhccccchHHHHHHHHh
Confidence 334455555666666666666666555543
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=13.42 E-value=87 Score=15.72 Aligned_cols=10 Identities=10% Similarity=0.537 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 035802 107 LVGIPVAYVL 116 (174)
Q Consensus 107 ~~~i~~~~~l 116 (174)
.+.+|++.+-
T Consensus 14 ~iflP~t~i~ 23 (64)
T d2iuba2 14 TIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3445555544
No 5
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=12.52 E-value=1.2e+02 Score=17.55 Aligned_cols=25 Identities=4% Similarity=0.231 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 18 PQPARLATRVAVALAVAEAAIVSIA 42 (174)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (174)
.+.+++..+..+..+++.++...+.
T Consensus 103 ~~~~~~s~~~~~~~si~~s~~~~~~ 127 (129)
T d1nekc_ 103 FEAGKRSAKISFVITVVLSLLAGVL 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666543
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.72 E-value=2.5e+02 Score=18.78 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=12.3
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHH
Q 035802 120 VHLRTKGLLLGLMSGSTVQAVALA 143 (174)
Q Consensus 120 ~~~g~~g~~~a~~~~~~~~~~~~~ 143 (174)
...|....++.......+..++..
T Consensus 405 ~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 405 DFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHH
Confidence 346666665555554444444333
No 7
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=9.72 E-value=2.1e+02 Score=17.71 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=28.0
Q ss_pred HhHHHHhhcCC--CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802 6 SIRVSNELGAG--NPQPARLATRVAVALAVAEAAIVSIALF 44 (174)
Q Consensus 6 ~~~v~~~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (174)
.+++-+.+..| +.++.++..++-+..++..+..++++..
T Consensus 60 ~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i~~ 100 (173)
T d2yvxa3 60 ATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLV 100 (173)
T ss_dssp HHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444 6678899999989888888888876544
No 8
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.52 E-value=53 Score=16.33 Aligned_cols=28 Identities=25% Similarity=0.111 Sum_probs=18.3
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHH
Q 035802 9 VSNELGAGNPQPARLATRVAVALAVAEA 36 (174)
Q Consensus 9 v~~~~G~~~~~~~~~~~~~~~~~~~~~~ 36 (174)
.++.+|.+..+.++.........+.+-+
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~g 29 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGA 29 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhh
Confidence 3566777777777777777665554433
No 9
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=8.77 E-value=1.5e+02 Score=19.44 Aligned_cols=51 Identities=20% Similarity=0.023 Sum_probs=34.6
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchH
Q 035802 9 VSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQD 59 (174)
Q Consensus 9 v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~ 59 (174)
.|+..|+++.+.-+|+.--...=++..+.++..+..+-.-.....++.+++
T Consensus 185 AA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~~~f~~~~~~~~~~~ 235 (290)
T d2r6gg1 185 AAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVN 235 (290)
T ss_dssp HHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHCCSGG
T ss_pred hHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhccccccceeccCCCC
Confidence 367789999999999888888888888777774444333234455555443
No 10
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.45 E-value=2.5e+02 Score=17.85 Aligned_cols=74 Identities=14% Similarity=0.020 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--cCcchhHHHHHHHHHHHHHHHHHHHHHHH-cCCCcchhHHHHHHHHHHHHHHHHH
Q 035802 70 LLSIAIFMDNMQSVLSGVARG--IGWQHIGAYINLGAFYLVGIPVAYVLCFA-VHLRTKGLLLGLMSGSTVQAVALAV 144 (174)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~g--~g~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~~g~~g~~~a~~~~~~~~~~~~~~ 144 (174)
++.|+.+...+. .+..++.. .|+-...-+..+++..++.....=-+... ....+.|.|+...+.....+++...
T Consensus 8 lilP~~li~~ls-~~~F~lp~~~~g~Rv~l~it~lLs~~~~~~~v~~~lP~tS~~vPli~~~~~~~~~~v~~sl~~t~ 84 (260)
T d1oede_ 8 IIAPCVLISSLV-VLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIVMNCV 84 (260)
T ss_dssp HHTHHHHHHHHH-HHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHheEecCCCCCCcEEeehhHHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333 33334433 24433334444444333333333333322 2356778887777666555554443
Done!