BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035808
         (131 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HYP|A Chain A, Crystal Structure Of Hydrophobic Protein From Soybean; A
           Member Of A New Cystine-Rich Family
          Length = 80

 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 13/84 (15%)

Query: 47  TCPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGIX 106
           +CP     L +C N+L   +  V        CC+LI GL D+EA VCLC  ++A  LGI 
Sbjct: 7   SCP----DLSICLNILGGSLGTV------DDCCALIGGLGDIEAIVCLCIQLRA--LGIL 54

Query: 107 XXXXXXXXXXXXFCGKKVPSGFQC 130
                        CG+  PS   C
Sbjct: 55  NLNRNLQLILNS-CGRSYPSNATC 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,233,694
Number of Sequences: 62578
Number of extensions: 62349
Number of successful extensions: 85
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 1
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)