Query         035808
Match_columns 131
No_of_seqs    106 out of 317
Neff          4.5 
Searched_HMMs 46136
Date          Fri Mar 29 06:36:10 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035808hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF14547 Hydrophob_seed:  Hydro 100.0 4.6E-37   1E-41  216.6   5.8   84   47-131     1-85  (85)
  2 cd01958 HPS_like HPS_like: Hyd 100.0 8.2E-38 1.8E-42  220.6   1.3   84   46-130     2-85  (85)
  3 smart00499 AAI Plant lipid tra  96.9 0.00042 9.1E-09   44.4   1.4   75   48-130     1-79  (79)
  4 PF14368 LTP_2:  Probable lipid  96.7 0.00017 3.6E-09   49.2  -1.7   57   71-130    39-96  (96)
  5 cd01959 nsLTP2 nsLTP2: Non-spe  96.5 0.00063 1.4E-08   45.7  -0.2   63   52-126     3-65  (66)
  6 cd04660 nsLTP_like nsLTP_like:  96.3  0.0016 3.5E-08   43.7   0.9   66   52-130     5-73  (73)
  7 PF00234 Tryp_alpha_amyl:  Prot  93.8  0.0075 1.6E-07   40.9  -1.8   67   53-130    13-90  (90)
  8 PF07172 GRP:  Glycine rich pro  93.3   0.065 1.4E-06   38.5   2.3   25    1-25      1-25  (95)
  9 cd00010 AAI_LTSS AAI_LTSS: Alp  92.2   0.053 1.2E-06   34.6   0.5   48   72-121    13-62  (63)
 10 cd01960 nsLTP1 nsLTP1: Non-spe  85.7    0.28 6.1E-06   33.6   0.3   68   52-125     7-79  (89)
 11 PF03058 Sar8_2:  Sar8.2 family  23.4      78  0.0017   23.0   2.4   13    1-17      1-13  (93)

No 1  
>PF14547 Hydrophob_seed:  Hydrophobic seed protein
Probab=100.00  E-value=4.6e-37  Score=216.56  Aligned_cols=84  Identities=77%  Similarity=1.423  Sum_probs=82.1

Q ss_pred             CCCccccccchhhhhhhhhhhhhcCCCCCCCCcccccCCcccchhhhHHHHhhhcccc-cccccchhHHHHHHHcCCCCC
Q 035808           47 TCPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILG-INLNVPVSLSLLLNFCGKKVP  125 (131)
Q Consensus        47 ~CP~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~dAA~CLCtaiKanvLG-i~~~ipv~l~~lln~CGk~~P  125 (131)
                      +||+|++||++|+|||| ++++.+|.+++++||++|+||+|+|||+|||+|+|+|++| |++++|++++++||.|||++|
T Consensus         1 ~CP~d~lkLgvC~~vL~-l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p   79 (85)
T PF14547_consen    1 TCPRDALKLGVCANVLG-LVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP   79 (85)
T ss_pred             CCCCcchhhhhhhhhhh-hhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence            69999999999999995 9999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             CCCccC
Q 035808          126 SGFQCA  131 (131)
Q Consensus       126 ~gf~C~  131 (131)
                      +||+|+
T Consensus        80 ~gf~C~   85 (85)
T PF14547_consen   80 SGFTCP   85 (85)
T ss_pred             CCCcCC
Confidence            999996


No 2  
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=100.00  E-value=8.2e-38  Score=220.59  Aligned_cols=84  Identities=74%  Similarity=1.355  Sum_probs=82.1

Q ss_pred             CCCCccccccchhhhhhhhhhhhhcCCCCCCCCcccccCCcccchhhhHHHHhhhcccccccccchhHHHHHHHcCCCCC
Q 035808           46 PTCPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGINLNVPVSLSLLLNFCGKKVP  125 (131)
Q Consensus        46 ~~CP~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~dAA~CLCtaiKanvLGi~~~ipv~l~~lln~CGk~~P  125 (131)
                      ++||+|++|||+|+|||+ ++++.+|+++.++||++|+||+|+|||+|||||||+|++||++|+|+++++++|.|||++|
T Consensus         2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi~~~~pv~l~llln~CGk~~P   80 (85)
T cd01958           2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNVP   80 (85)
T ss_pred             CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCcccccChhHHHHHHHHcCcCC
Confidence            589999999999999997 8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcc
Q 035808          126 SGFQC  130 (131)
Q Consensus       126 ~gf~C  130 (131)
                      +||+|
T Consensus        81 ~gf~C   85 (85)
T cd01958          81 PGFTC   85 (85)
T ss_pred             CCCcC
Confidence            99998


No 3  
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=96.93  E-value=0.00042  Score=44.42  Aligned_cols=75  Identities=36%  Similarity=0.720  Sum_probs=50.9

Q ss_pred             CCccccccchhhhhhhhhhhhhcCCCCCCCCcccccCCcccchhhhHHHHhhhcccccc----cccchhHHHHHHHcCCC
Q 035808           48 CPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGIN----LNVPVSLSLLLNFCGKK  123 (131)
Q Consensus        48 CP~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~dAA~CLCtaiKanvLGi~----~~ipv~l~~lln~CGk~  123 (131)
                      |.....++..|...+.+..   ...++.++||..++++.   ...|+|.+++....++.    ++. .....|-+.||..
T Consensus         1 C~~~~~~~~~c~~~~~~~~---~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~~-~~a~~lp~~C~~~   73 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGS---PGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVNA-QNAASLPSACGVP   73 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCC---CCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhhH-HHHHhhHHhcCCC
Confidence            3444455667777763110   12355688999999997   67799999998876653    233 3455788899999


Q ss_pred             CCCCCcc
Q 035808          124 VPSGFQC  130 (131)
Q Consensus       124 ~P~gf~C  130 (131)
                      +|. +.|
T Consensus        74 ~~~-~~C   79 (79)
T smart00499       74 PPY-TDC   79 (79)
T ss_pred             CCC-CCC
Confidence            876 554


No 4  
>PF14368 LTP_2:  Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=96.73  E-value=0.00017  Score=49.19  Aligned_cols=57  Identities=35%  Similarity=0.751  Sum_probs=34.7

Q ss_pred             CCCCCCCCcccccCCcccchhhhHHHHhhhcc-cccccccchhHHHHHHHcCCCCCCCCcc
Q 035808           71 GTPPKTPCCSLIKGLVDLEAAVCLCTAIKANI-LGINLNVPVSLSLLLNFCGKKVPSGFQC  130 (131)
Q Consensus        71 g~p~~~~CC~li~gL~d~dAA~CLCtaiKanv-LGi~~~ipv~l~~lln~CGk~~P~gf~C  130 (131)
                      +..+.++||.-++.+.+. ...|||..++... .++.+|..-.+ .|...||...|. ++|
T Consensus        39 ~~~Ps~~CC~~l~~~~~~-~~~ClC~~~~~~~~~~~~in~~~a~-~Lp~~Cg~~~~~-~~C   96 (96)
T PF14368_consen   39 GPAPSAACCSALKSVVQA-DPPCLCQLLNSPGAPGFGINVTRAL-ALPAACGVPVPP-SKC   96 (96)
T ss_dssp             -----HHHHHHHCC-----HCCHHHCCCC-CCHCHHCCTCHHHH-HHHHHCTSS-S-----
T ss_pred             CCCCCHHHHHHHHHhccC-CCCCHHHhcCccccccCCcCHHHHH-HHHHHcCCCCCC-CCC
Confidence            456678899999999774 4899999999987 55566766555 578899999998 887


No 5  
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=96.48  E-value=0.00063  Score=45.74  Aligned_cols=63  Identities=30%  Similarity=0.614  Sum_probs=47.4

Q ss_pred             ccccchhhhhhhhhhhhhcCCCCCCCCcccccCCcccchhhhHHHHhhhcccccccccchhHHHHHHHcCCCCCC
Q 035808           52 TLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGINLNVPVSLSLLLNFCGKKVPS  126 (131)
Q Consensus        52 ~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~dAA~CLCtaiKanvLGi~~~ipv~l~~lln~CGk~~P~  126 (131)
                      ..+|..|.....      .|.+++++||.-|+.     +-.|||.-+|...++.-+|.+-+. -|.+.||..+|.
T Consensus         3 ~~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~~~i~~~~A~-~l~~~Cgv~~P~   65 (66)
T cd01959           3 PTQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLKQYVNSPNAR-KVLAACGVPYPN   65 (66)
T ss_pred             hhhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHHhhcCcHHHH-HHHHHcCCCCCC
Confidence            346888888753      357888999999997     237999999886666446666665 578899999874


No 6  
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=96.28  E-value=0.0016  Score=43.69  Aligned_cols=66  Identities=26%  Similarity=0.538  Sum_probs=47.2

Q ss_pred             ccccchhhhhhhhhhhhhcCC---CCCCCCcccccCCcccchhhhHHHHhhhcccccccccchhHHHHHHHcCCCCCCCC
Q 035808           52 TLKLGVCANVLNDLVHLVVGT---PPKTPCCSLIKGLVDLEAAVCLCTAIKANILGINLNVPVSLSLLLNFCGKKVPSGF  128 (131)
Q Consensus        52 ~lkL~vCa~vL~gl~~~~lg~---p~~~~CC~li~gL~d~dAA~CLCtaiKanvLGi~~~ipv~l~~lln~CGk~~P~gf  128 (131)
                      ..+|..|...+.      -|.   ++.+.||+-|+.+ |  . .|+|..++.....+ +|..- ...|-+.||..+|. +
T Consensus         5 ~~~L~~C~~yl~------~~~~~~~Ps~~CC~~vk~~-~--~-~C~C~~~~~~~~~~-i~~~~-a~~Lp~~Cgv~~p~-~   71 (73)
T cd04660           5 LDLLAECQPYVT------GPNPPPPPSRECCAALRRA-D--L-PCLCRYKTSLVLQI-IDPDK-AVYLPAKCGLPLPP-S   71 (73)
T ss_pred             HHHHHHHHHHHc------CCCCCCCCCHHHHHHHHcC-C--c-CCEeeccCCCcccc-cCHHH-HHHHHHHcCCCCCC-C
Confidence            346777888763      122   3567899999985 2  2 39999998876643 55554 44688899999999 9


Q ss_pred             cc
Q 035808          129 QC  130 (131)
Q Consensus       129 ~C  130 (131)
                      +|
T Consensus        72 ~C   73 (73)
T cd04660          72 SC   73 (73)
T ss_pred             CC
Confidence            88


No 7  
>PF00234 Tryp_alpha_amyl:  Protease inhibitor/seed storage/LTP family This is a small subfamily;  InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=93.83  E-value=0.0075  Score=40.89  Aligned_cols=67  Identities=22%  Similarity=0.528  Sum_probs=48.5

Q ss_pred             cccchhhhhhhhhhhhhcCCCCCCCCcccccCCcccchhhhHHHHhhhccccc-----------ccccchhHHHHHHHcC
Q 035808           53 LKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGI-----------NLNVPVSLSLLLNFCG  121 (131)
Q Consensus        53 lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~dAA~CLCtaiKanvLGi-----------~~~ipv~l~~lln~CG  121 (131)
                      ..+..|...+.|-.     ..+.++||.-|+.|    -..|.|.+||..+.++           .++... ...|-+.||
T Consensus        13 ~~l~~c~~~~~~~~-----~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~-a~~LP~~C~   82 (90)
T PF00234_consen   13 VRLSPCLPYLQGGC-----QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQR-AQNLPSMCN   82 (90)
T ss_dssp             SHHHGGHHHHTTSS-----SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHH-HHHHHHHTT
T ss_pred             ccccccHHHHhccc-----ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHH-HHHHHHHCC
Confidence            56777877764111     13457899999999    8899999999988873           444443 456888999


Q ss_pred             CCCCCCCcc
Q 035808          122 KKVPSGFQC  130 (131)
Q Consensus       122 k~~P~gf~C  130 (131)
                      ..+|. |.|
T Consensus        83 v~~~~-~~C   90 (90)
T PF00234_consen   83 VSPPY-TDC   90 (90)
T ss_dssp             SSSSS-S-G
T ss_pred             CCCCC-CCC
Confidence            99987 665


No 8  
>PF07172 GRP:  Glycine rich protein family;  InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=93.30  E-value=0.065  Score=38.46  Aligned_cols=25  Identities=28%  Similarity=0.262  Sum_probs=16.5

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHhhc
Q 035808            1 MARVLLAPTALLLSLNLIFFTLVSS   25 (131)
Q Consensus         1 MAsk~~~~~al~l~lnll~f~~~~~   25 (131)
                      ||||+--.+++||++.||++|-+++
T Consensus         1 MaSK~~llL~l~LA~lLlisSevaa   25 (95)
T PF07172_consen    1 MASKAFLLLGLLLAALLLISSEVAA   25 (95)
T ss_pred             CchhHHHHHHHHHHHHHHHHhhhhh
Confidence            9999644456666666666665554


No 9  
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=92.22  E-value=0.053  Score=34.56  Aligned_cols=48  Identities=33%  Similarity=0.655  Sum_probs=31.8

Q ss_pred             CCCCCCCcccccCCcccchhhhHHHHhhhccccc-cc-ccchhHHHHHHHcC
Q 035808           72 TPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGI-NL-NVPVSLSLLLNFCG  121 (131)
Q Consensus        72 ~p~~~~CC~li~gL~d~dAA~CLCtaiKanvLGi-~~-~ipv~l~~lln~CG  121 (131)
                      ..+.++||.-++.+.+.| ..|||..+|...... .+ |.. ....|-+.||
T Consensus        13 ~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~~~~~~-~a~~LP~~Cg   62 (63)
T cd00010          13 TAPPSDCCSGLKSVVKSD-PKCLCAALNGPGASLLGLKNAT-RALALPAACG   62 (63)
T ss_pred             CCCChHHHHHHHHHHhcC-hhhHHHHHcCccccccCcccHH-HHHhchHhcC
Confidence            356788999999997764 469999999866432 11 222 2335666676


No 10 
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=85.70  E-value=0.28  Score=33.60  Aligned_cols=68  Identities=32%  Similarity=0.534  Sum_probs=43.2

Q ss_pred             ccccchhhhhhhhhhhhhcCCCCCCCCcccccCCccc----chhhhHHHHhhhcccccc-cccchhHHHHHHHcCCCCC
Q 035808           52 TLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDL----EAAVCLCTAIKANILGIN-LNVPVSLSLLLNFCGKKVP  125 (131)
Q Consensus        52 ~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~----dAA~CLCtaiKanvLGi~-~~ipv~l~~lln~CGk~~P  125 (131)
                      ..+|.-|.+.+.|-     +..+.++||.-++.|.+.    +...|+|.-+|....++. +|...++ .|=..||-..|
T Consensus         7 ~~~l~~C~~y~~g~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~-~LP~~C~v~~~   79 (89)
T cd01960           7 TSLLAPCLGYLTGG-----GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAA-GLPGKCGVSIP   79 (89)
T ss_pred             HhhHHhHHHHHhCC-----CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHH-hChHhcccCCC
Confidence            34677788877421     235678899999998654    223466666776665554 5554443 46668988754


No 11 
>PF03058 Sar8_2:  Sar8.2 family;  InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=23.37  E-value=78  Score=23.00  Aligned_cols=13  Identities=38%  Similarity=0.511  Sum_probs=9.1

Q ss_pred             CCCCcchhHHHHHHHHH
Q 035808            1 MARVLLAPTALLLSLNL   17 (131)
Q Consensus         1 MAsk~~~~~al~l~lnl   17 (131)
                      |++|+    -+||.|+|
T Consensus         1 M~~Kt----nlfl~lSL   13 (93)
T PF03058_consen    1 MVSKT----NLFLCLSL   13 (93)
T ss_pred             Ccchh----hhHHHHHH
Confidence            89986    45666666


Done!