Query 035808
Match_columns 131
No_of_seqs 106 out of 317
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:51:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyp_A Hydrophobic protein fro 100.0 1.4E-31 4.9E-36 186.0 2.0 73 46-131 6-78 (80)
2 1n89_A Lipid transfer protein; 96.6 0.00056 1.9E-08 44.6 1.1 61 53-125 5-65 (67)
3 1l6h_A LTP2, non-specific lipi 96.0 0.00057 1.9E-08 44.9 -1.3 61 53-125 6-66 (69)
4 2rkn_A DIR1 protein, AT5G48485 95.8 0.0025 8.6E-08 42.2 1.0 70 46-126 3-75 (77)
5 1siy_A LTP 1, NS-LTP1, nonspec 93.6 0.016 5.5E-07 39.6 0.5 69 48-125 3-78 (91)
6 2alg_A Non-specific lipid tran 93.1 0.008 2.7E-07 41.2 -1.6 67 52-126 8-80 (92)
7 1afh_A Maize nonspecific lipid 89.0 0.063 2.1E-06 36.7 -0.5 71 48-125 4-80 (93)
8 1bwo_A NS-LTP1, nonspecific li 88.3 0.04 1.4E-06 37.5 -1.8 66 52-125 7-78 (90)
9 2ljo_A Non-specific lipid-tran 83.4 0.16 5.6E-06 34.9 -0.7 70 54-130 10-88 (93)
10 1t12_A LTP 1, nonspecific lipi 81.6 0.25 8.6E-06 33.6 -0.3 65 52-125 8-78 (91)
No 1
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=99.96 E-value=1.4e-31 Score=185.96 Aligned_cols=73 Identities=49% Similarity=1.040 Sum_probs=66.6
Q ss_pred CCCCccccccchhhhhhhhhhhhhcCCCCCCCCcccccCCcccchhhhHHHHhhhcccccccccchhHHHHHHHcCCCCC
Q 035808 46 PTCPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGINLNVPVSLSLLLNFCGKKVP 125 (131)
Q Consensus 46 ~~CP~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~dAA~CLCtaiKanvLGi~~~ipv~l~~lln~CGk~~P 125 (131)
++|| |||+|+|||||++ | +.++|||+|+||+|+|||+|||||||+ ||| +|+|+++++|+|.|||++|
T Consensus 6 ~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik~--Lgi-lnlpv~L~llln~Cgk~~P 72 (80)
T 1hyp_A 6 PSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLRA--LGI-LNLNRNLQLILNSCGRSYP 72 (80)
T ss_dssp CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHHH--HTC-SCHHHHHHHHHHHTTCSSC
T ss_pred CCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhccc--cce-eecChhHHHHHHHhCCcCc
Confidence 4799 8999999997543 2 568999999999999999999999994 899 9999999999999999999
Q ss_pred CCCccC
Q 035808 126 SGFQCA 131 (131)
Q Consensus 126 ~gf~C~ 131 (131)
+||+|+
T Consensus 73 ~gF~C~ 78 (80)
T 1hyp_A 73 SNATCP 78 (80)
T ss_dssp CCCCCS
T ss_pred CCCCCC
Confidence 999996
No 2
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=96.60 E-value=0.00056 Score=44.64 Aligned_cols=61 Identities=30% Similarity=0.616 Sum_probs=46.0
Q ss_pred cccchhhhhhhhhhhhhcCCCCCCCCcccccCCcccchhhhHHHHhhhcccccccccchhHHHHHHHcCCCCC
Q 035808 53 LKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGINLNVPVSLSLLLNFCGKKVP 125 (131)
Q Consensus 53 lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~dAA~CLCtaiKanvLGi~~~ipv~l~~lln~CGk~~P 125 (131)
.+|..|...+. -|.++..+||.-|++ ...|+|..+|...++..||.+.+. .|...||..+|
T Consensus 5 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A~-~Lp~~Cgv~~P 65 (67)
T 1n89_A 5 SQLAVCASAIL------SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYGQYIRSPHAR-DTLTSCGLAVP 65 (67)
T ss_dssp STTHHHHHHHT------TCCCCCHHHHHHHHH-----HSSHHHHGGGCSTTHHHHTCHHHH-HHHHHHTSCCS
T ss_pred hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHHH-HHHHHcCCCCC
Confidence 36788988763 145677789999985 478999999976665456666665 47789999988
No 3
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=96.04 E-value=0.00057 Score=44.86 Aligned_cols=61 Identities=28% Similarity=0.603 Sum_probs=45.7
Q ss_pred cccchhhhhhhhhhhhhcCCCCCCCCcccccCCcccchhhhHHHHhhhcccccccccchhHHHHHHHcCCCCC
Q 035808 53 LKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIKANILGINLNVPVSLSLLLNFCGKKVP 125 (131)
Q Consensus 53 lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~dAA~CLCtaiKanvLGi~~~ipv~l~~lln~CGk~~P 125 (131)
.+|..|...+. -|.++..+||.-|++ ...|+|..+|...++..||.+.+. .|...||..+|
T Consensus 6 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A~-~Lp~~Cgv~~P 66 (69)
T 1l6h_A 6 GQLTVCTGAIA------GGARPTAACCSSLRA-----QQGCFCQFAKDPRYGRYVNSPNAR-KAVSSCGIALP 66 (69)
T ss_dssp TTHHHHHHHHT------TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHHHHTTTTTGG-GCCCCCSSCSC
T ss_pred hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHHH-HHHHHcCCCCC
Confidence 36788988763 145677789999985 489999999876665456666665 47788999987
No 4
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=95.79 E-value=0.0025 Score=42.19 Aligned_cols=70 Identities=23% Similarity=0.506 Sum_probs=47.7
Q ss_pred CCCCccccccchhhhhhhhhhhhhcCCCCCCCCcccccCCcccchhhhHHHHhh---hcccccccccchhHHHHHHHcCC
Q 035808 46 PTCPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLEAAVCLCTAIK---ANILGINLNVPVSLSLLLNFCGK 122 (131)
Q Consensus 46 ~~CP~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~dAA~CLCtaiK---anvLGi~~~ipv~l~~lln~CGk 122 (131)
..|-.+..+|..|...+.+ .-..++..+||.-|++ +| -.|||..++ +.-+|| |...++ .|-..||.
T Consensus 3 ~~C~~~~~~L~pC~~yv~~----~~~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~gi--n~~~A~-~LP~~Cgv 71 (77)
T 2rkn_A 3 DLCGMSQDELNECKPAVSK----ENPTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFGV--DPELAS-ALPKQCGL 71 (77)
T ss_dssp CBTTBCHHHHHHHGGGGBS----SSCCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHTB--CHHHHH-HHHHHTTC
T ss_pred chHHhHHHhHhhCHHHHcC----CCCCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcCc--CHHHHH-HHHHHcCC
Confidence 3577777788889887631 0013566789999998 33 389999887 333454 454455 57789999
Q ss_pred CCCC
Q 035808 123 KVPS 126 (131)
Q Consensus 123 ~~P~ 126 (131)
.+|.
T Consensus 72 ~~p~ 75 (77)
T 2rkn_A 72 ANAP 75 (77)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9874
No 5
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=93.59 E-value=0.016 Score=39.58 Aligned_cols=69 Identities=28% Similarity=0.555 Sum_probs=45.8
Q ss_pred CCccccccchhhhhhhhhhhhhcCCCCCCCCcccccCCccc-----c-hhhhHHHHhhhccccc-ccccchhHHHHHHHc
Q 035808 48 CPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDL-----E-AAVCLCTAIKANILGI-NLNVPVSLSLLLNFC 120 (131)
Q Consensus 48 CP~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~-----d-AA~CLCtaiKanvLGi-~~~ipv~l~~lln~C 120 (131)
|-....+|.-|.+.+.| |.++..+||.-+++|.+. | -+.|+|. |...-++ .+|...+. .|-..|
T Consensus 3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~--k~~~~~~~~in~~~A~-~LP~~C 73 (91)
T 1siy_A 3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCL--KAAAGAVRGINPNNAE-ALPGKC 73 (91)
T ss_dssp TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHH--HHHTTCCSSCCHHHHH-HHHHHH
T ss_pred HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCccc--CCcccccCCcCHHHHH-HHHHHc
Confidence 55555678888888741 334667899999998643 3 2689997 4332223 45555555 577899
Q ss_pred CCCCC
Q 035808 121 GKKVP 125 (131)
Q Consensus 121 Gk~~P 125 (131)
|..+|
T Consensus 74 gv~~p 78 (91)
T 1siy_A 74 GVNIP 78 (91)
T ss_dssp TCCCS
T ss_pred CCCCC
Confidence 99876
No 6
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=93.11 E-value=0.008 Score=41.19 Aligned_cols=67 Identities=22% Similarity=0.457 Sum_probs=45.5
Q ss_pred ccccchhhhhhhhhhhhhcCCCCCCCCcccccCCccc-----c-hhhhHHHHhhhcccccccccchhHHHHHHHcCCCCC
Q 035808 52 TLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDL-----E-AAVCLCTAIKANILGINLNVPVSLSLLLNFCGKKVP 125 (131)
Q Consensus 52 ~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~-----d-AA~CLCtaiKanvLGi~~~ipv~l~~lln~CGk~~P 125 (131)
..+|.-|...+.| |.++..+||.-+++|... | -+.|+|...++.-++ .+|...+. .|-..||-.+|
T Consensus 8 ~~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~-~in~~~A~-~LP~~Cgv~~p 79 (92)
T 2alg_A 8 SSSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP-GVNPNNAA-ALPGKCGVSIP 79 (92)
T ss_dssp HHHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST-TCCHHHHH-HHHHHTTCCCS
T ss_pred HHhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC-ccChHHHH-HHHHHcCCCCC
Confidence 3467778887731 334556899999998632 2 268999877666664 45555555 57789999876
Q ss_pred C
Q 035808 126 S 126 (131)
Q Consensus 126 ~ 126 (131)
-
T Consensus 80 ~ 80 (92)
T 2alg_A 80 Y 80 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 7
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=88.95 E-value=0.063 Score=36.70 Aligned_cols=71 Identities=25% Similarity=0.501 Sum_probs=44.6
Q ss_pred CCccccccchhhhhhhhhhhhhcCCCCCCCCcccccCCccc---ch---hhhHHHHhhhcccccccccchhHHHHHHHcC
Q 035808 48 CPRDTLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDL---EA---AVCLCTAIKANILGINLNVPVSLSLLLNFCG 121 (131)
Q Consensus 48 CP~d~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~---dA---A~CLCtaiKanvLGi~~~ipv~l~~lln~CG 121 (131)
|-....+|.-|.+.+.|- +..+..+||.-+++|.+. .+ +.|+|....+.-++ .+|...++ .|=..||
T Consensus 4 C~~v~~~L~pCl~y~~~~-----~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~-~in~~~A~-~LP~~C~ 76 (93)
T 1afh_A 4 CGQVASAIAPCISYARGQ-----GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS-GLNAGNAA-SIPSKCG 76 (93)
T ss_dssp SHHHHHHHGGGHHHHTTS-----CCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTST-TCCHHHHH-HHHHHHH
T ss_pred hHHHHHhccCcHHHHcCC-----CCCChHHHHHHHHHHHHhhcCCCCCcccCEeecccccccc-CcCHHHHH-HHHHHcC
Confidence 433445677788877411 233556899999998532 22 68999755554453 34554555 4677899
Q ss_pred CCCC
Q 035808 122 KKVP 125 (131)
Q Consensus 122 k~~P 125 (131)
-.+|
T Consensus 77 v~~p 80 (93)
T 1afh_A 77 VSIP 80 (93)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8876
No 8
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=88.26 E-value=0.04 Score=37.55 Aligned_cols=66 Identities=24% Similarity=0.450 Sum_probs=41.7
Q ss_pred ccccchhhhhhhhhhhhhcCCCCCCCCcccccCCccc-----c-hhhhHHHHhhhcccccccccchhHHHHHHHcCCCCC
Q 035808 52 TLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDL-----E-AAVCLCTAIKANILGINLNVPVSLSLLLNFCGKKVP 125 (131)
Q Consensus 52 ~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~-----d-AA~CLCtaiKanvLGi~~~ipv~l~~lln~CGk~~P 125 (131)
..+|.-|.+.+.| |.++..+||.-+++|... | -+.|+|-.-.+..++ .+|...+. .|-..||-.+|
T Consensus 7 ~~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A~-~LP~~C~v~~p 78 (90)
T 1bwo_A 7 DSLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH-NLNEDNAR-SIPPKCGVNLP 78 (90)
T ss_dssp HHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT-TCCHHHHH-THHHHHTCCCS
T ss_pred HHhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC-CcCHHHHH-HHHHHcCCCCC
Confidence 3467778777631 334667899999998642 1 268999432233332 45555555 57788999876
No 9
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=83.41 E-value=0.16 Score=34.91 Aligned_cols=70 Identities=27% Similarity=0.550 Sum_probs=44.9
Q ss_pred ccchhhhhhhhhhhhhcCCCCCCCCcccccCCcccc----hhhhHHHHhhhccccc-ccccchhHHHHHHHcCCCCC---
Q 035808 54 KLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLE----AAVCLCTAIKANILGI-NLNVPVSLSLLLNFCGKKVP--- 125 (131)
Q Consensus 54 kL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~d----AA~CLCtaiKanvLGi-~~~ipv~l~~lln~CGk~~P--- 125 (131)
.|.-|.+.+.| |..+..+||.-+++|.+.- .-.|+|..+|...-++ .+|...+. .|=..||-.+|
T Consensus 10 ~L~pCl~Yv~g------~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~-~LP~~CgV~~p~~I 82 (93)
T 2ljo_A 10 DLSPCLTYLTG------GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAA-ALPGKCGVNIPYKI 82 (93)
T ss_dssp HHHHHHHHHTT------SSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHH-HHHHHHTCCCSSCC
T ss_pred HHHhHHHHHcC------CCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHH-hhhHhcCCCCCCCC
Confidence 45556665531 3345678999888886532 2468888888655332 45554444 47778999988
Q ss_pred -CCCcc
Q 035808 126 -SGFQC 130 (131)
Q Consensus 126 -~gf~C 130 (131)
+.+.|
T Consensus 83 s~~~dC 88 (93)
T 2ljo_A 83 STTTNC 88 (93)
T ss_dssp STTCCG
T ss_pred CCCCCC
Confidence 55666
No 10
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=81.64 E-value=0.25 Score=33.61 Aligned_cols=65 Identities=28% Similarity=0.540 Sum_probs=41.3
Q ss_pred ccccchhhhhhhhhhhhhcCCCCCCCCcccccCCcccc------hhhhHHHHhhhcccccccccchhHHHHHHHcCCCCC
Q 035808 52 TLKLGVCANVLNDLVHLVVGTPPKTPCCSLIKGLVDLE------AAVCLCTAIKANILGINLNVPVSLSLLLNFCGKKVP 125 (131)
Q Consensus 52 ~lkL~vCa~vL~gl~~~~lg~p~~~~CC~li~gL~d~d------AA~CLCtaiKanvLGi~~~ipv~l~~lln~CGk~~P 125 (131)
..+|.-|.+.+.| |.++. +||.-|++|...- -+.|+|-.--++.++ .+|...++ .|=..||-.+|
T Consensus 8 ~~~L~pCl~y~~~------~~~P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A~-~LP~~C~v~~p 78 (91)
T 1t12_A 8 TSNLAPCLAYLRN------TGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS-GINLGKAA-GLPSTCGVNIP 78 (91)
T ss_dssp HHHTHHHHHHHTT------SSCCT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCT-TCCHHHHH-HHHHHTTCCCS
T ss_pred HHhccCcHHHHcC------CCChH-HHHHHHHHHHhhccCCCCCCccCCCccccccccC-CcChhHHH-HHHHHcCCCCC
Confidence 4467778777631 22255 8999999986531 378999632233343 45555555 47788999876
Done!