BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035812
(520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 449 bits (1156), Expect = e-126, Method: Compositional matrix adjust.
Identities = 236/518 (45%), Positives = 335/518 (64%), Gaps = 22/518 (4%)
Query: 10 ELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHR 69
E FLKC H+ + +L+YT+++ + S+LN+ I+N RF++ +TPKPL IVTP++
Sbjct: 5 ENFLKCF-SKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNN 63
Query: 70 SHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQ 129
SH+QATI CS + GL++R RSGGHD EG+SY S VPFVV+D+ N+ I I++ +TAWV+
Sbjct: 64 SHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVE 123
Query: 130 AGATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQLV 189
AGAT+GE+YY I+ ++ +FP G CPT+ LMR YGL++DN++DA LV
Sbjct: 124 AGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLV 183
Query: 190 DVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQ 249
+V+G++L+R+SMGEDLFWAIRGGGGE+FG+I AWKIKLV+VP K T+F+V K +
Sbjct: 184 NVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNME---IH 240
Query: 250 GATDVIYKWQQVAPKLPGELFIRA---MPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPL 306
G + KWQ +A K +L + + + + TV F +F G + SL+ L
Sbjct: 241 GLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDL 300
Query: 307 MNQQFPELGLRAEDCHEMSWVESTLFWD---QYRIGTSIK-VLLNRSTDVKFSSKNKSDY 362
MN+ FPELG++ DC E SW+++T+F+ + K +LL+RS K + K DY
Sbjct: 301 MNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDY 360
Query: 363 VKNVIPKKALEEIWTKMI--NFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCA 420
VK IP+ A+ +I K+ + G PYGG M EISES FPHRAG ++++ Y A
Sbjct: 361 VKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTA 420
Query: 421 LWEEEGINSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIG---NSYPSNKTSLLR 477
WE++ N ++ + +R Y PYVS +PR A+ NYRDLD+G ++ P+N T
Sbjct: 421 SWEKQEDNEKHI--NWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQ--- 475
Query: 478 DADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPP 515
A ++G KYF N+ RLV+VKTKVDP NFF+NEQSIPP
Sbjct: 476 -ARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPP 512
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/508 (45%), Positives = 317/508 (62%), Gaps = 25/508 (4%)
Query: 12 FLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSH 71
FL CL D + P +Y +++ ++ SV ++ ++N +FL+ T KPL I+TP + SH
Sbjct: 13 FLTCLTKD-IPPRQ-----LYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTNASH 66
Query: 72 VQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVP--FVVLDMFNLRKIDINIADETAWVQ 129
+QA + C + G+ +R+RSGGHDYEGLSY S P F V+DM +R + I+ TAWV
Sbjct: 67 IQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATAWVD 126
Query: 130 AGATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQLV 189
+GA +G+LYY I+ S FPAGVC TI L+RKYG ++DNV+DA++V
Sbjct: 127 SGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAKVV 186
Query: 190 DVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQ 249
D +GR+L+R++MGED FWAIRGGGGESFG++ +W++KL+ VP KVTVF V K +
Sbjct: 187 DAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHK----GIKE 242
Query: 250 GATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQ 309
GA D++ KWQ VAP LP +L IR M + + M F ++LG L+ LM
Sbjct: 243 GAIDLVTKWQTVAPALPDDLMIRIM--------AMGQGAM--FEALYLGTCKDLVLLMTA 292
Query: 310 QFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSSKNKSDYVKNVIPK 369
+FPELG+ A C EM+W+ES + GT ++ LLNR++++K K KSDYV IPK
Sbjct: 293 RFPELGMNATHCKEMTWIESVPYIPMGPKGT-VRDLLNRTSNIKAFGKYKSDYVLEPIPK 351
Query: 370 KALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEGINS 429
E+I+T ++ G M +PYGG ++ + ES T FP R+G LF IQY W EG +
Sbjct: 352 SDWEKIFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEG--A 409
Query: 430 TNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKYFKG 489
L T RD Y M PYVS +PR+A+ NYRDLD+G + S V+G KYFKG
Sbjct: 410 AALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKG 469
Query: 490 NYKRLVEVKTKVDPFNFFKNEQSIPPGL 517
N++RL K K+DP ++F+NEQSIPP L
Sbjct: 470 NFERLARTKGKIDPEDYFRNEQSIPPLL 497
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/509 (43%), Positives = 309/509 (60%), Gaps = 25/509 (4%)
Query: 10 ELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHR 69
E FL CL+ + + P L+Y +++ ++ SVL I+N R+ +P KPL I+TP
Sbjct: 9 EDFLGCLVKE-IPP-----RLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQV 62
Query: 70 SHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVP--FVVLDMFNLRKIDINIADETAW 127
SH+Q+ + C + + +R+RSGGHDYEGLSY S P F V+D+ +R + ++ TAW
Sbjct: 63 SHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAW 122
Query: 128 VQAGATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQ 187
V +GA +GELYY I S AFPAGVCPTI L+RKYG++++NV+D +
Sbjct: 123 VDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVK 182
Query: 188 LVDVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQAT 247
LVD G++ +++SMG+D FWA+RGGGGESFG+++AW++KL+ VP VT+F + KT
Sbjct: 183 LVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKT----V 238
Query: 248 SQGATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLM 307
S+GA D+I KWQ VAP+LP +L IR + G + +F M+LG +L PLM
Sbjct: 239 SEGAVDIINKWQVVAPQLPADLMIRI---IAQGPK-------ATFEAMYLGTCKTLTPLM 288
Query: 308 NQQFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSSKNKSDYVKNVI 367
+ +FPELG+ C+EMSW++S F LLNR K ++ KSDYV
Sbjct: 289 SSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPF 348
Query: 368 PKKALEEIW-TKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEG 426
PK E+I T ++ G M ++PYG +S ES T FPHR G LF IQY W G
Sbjct: 349 PKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPG 408
Query: 427 INSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKY 486
+ L SK D Y M PYVS +PR+A+ NYRD+D+G + N S V+G KY
Sbjct: 409 AAAAPLSWSK--DIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKY 466
Query: 487 FKGNYKRLVEVKTKVDPFNFFKNEQSIPP 515
FKGN++RL K KVDP ++F+NEQSIPP
Sbjct: 467 FKGNFERLAITKGKVDPTDYFRNEQSIPP 495
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 202/517 (39%), Positives = 282/517 (54%), Gaps = 29/517 (5%)
Query: 12 FLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSH 71
L CL + V S ++S F L+ I+N F KP AI+ P +
Sbjct: 8 LLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 63
Query: 72 VQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAG 131
+ TI+C + +R+RSGGH YEGLSYTS PF+++D+ NL ++ I++ ETAWV++G
Sbjct: 64 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESG 123
Query: 132 ATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQLVDV 191
+T+GELYY I+ S F AG CPT+ + RKYGL++DNVVDA L+D
Sbjct: 124 STLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILIDA 183
Query: 192 EGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTT--DQATSQ 249
G IL+R++MGED+FWAIRGGGG +G I AWKIKL+ VPEKVTVF V K D+ATS
Sbjct: 184 NGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS- 242
Query: 250 GATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQ 309
+++KWQ VA +L + + V+ G+ EK V ++ +G G + +
Sbjct: 243 ----LLHKWQFVAEELEEDFTL----SVLGGAD--EKQVWLTMLGFHFGLKTVAKSTFDL 292
Query: 310 QFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSS---KNKSDYVKNV 366
FPELGL ED EMSW ES Y G LN +KF K K D K
Sbjct: 293 LFPELGLVEEDYLEMSWGESF----AYLAGLETVSQLNNRF-LKFDERAFKTKVDLTKEP 347
Query: 367 IPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEG 426
+P KA + ++ N ++ N +GG+MS+IS T FPHR+G ++Y W +
Sbjct: 348 LPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE 407
Query: 427 INSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADV---YG 483
+ + Y M P+VS +PR + N+ DLD+G NKT + ++ +G
Sbjct: 408 QKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWG 467
Query: 484 AKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPPGLVNF 520
YF NY+RL+ KT +DP N F + QSIPP + NF
Sbjct: 468 ESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP-MANF 503
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 202/517 (39%), Positives = 282/517 (54%), Gaps = 29/517 (5%)
Query: 12 FLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSH 71
L CL + V S ++S F L+ I+N F KP AI+ P +
Sbjct: 8 LLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 63
Query: 72 VQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAG 131
+ TI+C + +R+RSGGH YEGLSYTS PF+++D+ NL ++ I++ ETAWV++G
Sbjct: 64 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESG 123
Query: 132 ATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQLVDV 191
+T+GELYY I+ S F AG CPT+ + RKYGL++DNVVDA L+D
Sbjct: 124 STLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDA 183
Query: 192 EGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTT--DQATSQ 249
G IL+R++MGED+FWAIRGGGG +G I AWKIKL+ VPEKVTVF V K D+ATS
Sbjct: 184 NGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS- 242
Query: 250 GATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQ 309
+++KWQ VA +L + + V+ G+ EK V ++ +G G + +
Sbjct: 243 ----LLHKWQFVAEELEEDFTL----SVLGGAD--EKQVWLTMLGFHFGLKTVAKSTFDL 292
Query: 310 QFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSS---KNKSDYVKNV 366
FPELGL ED EMSW ES Y G LN +KF K K D K
Sbjct: 293 LFPELGLVEEDYLEMSWGESF----AYLAGLETVSQLNNRF-LKFDERAFKTKVDLTKEP 347
Query: 367 IPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEG 426
+P KA + ++ N ++ N +GG+MS+IS T FPHR+G ++Y W +
Sbjct: 348 LPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE 407
Query: 427 INSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADV---YG 483
+ + Y M P+VS +PR + N+ DLD+G NKT + ++ +G
Sbjct: 408 QKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWG 467
Query: 484 AKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPPGLVNF 520
YF NY+RL+ KT +DP N F + QSIPP + NF
Sbjct: 468 ESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP-MANF 503
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 202/517 (39%), Positives = 282/517 (54%), Gaps = 29/517 (5%)
Query: 12 FLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSH 71
L CL + V S ++S F L+ I+N F KP AI+ P +
Sbjct: 27 LLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 82
Query: 72 VQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAG 131
+ TI+C + +R+RSGGH YEGLSYTS PF+++D+ NL ++ I++ ETAWV++G
Sbjct: 83 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESG 142
Query: 132 ATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQLVDV 191
+T+GELYY I+ S F AG CPT+ + RKYGL++DNVVDA L+D
Sbjct: 143 STLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDA 202
Query: 192 EGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTT--DQATSQ 249
G IL+R++MGED+FWAIRGGGG +G I AWKIKL+ VPEKVTVF V K D+ATS
Sbjct: 203 NGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS- 261
Query: 250 GATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQ 309
+++KWQ VA +L + + V+ G+ EK V ++ +G G + +
Sbjct: 262 ----LLHKWQFVAEELEEDFTL----SVLGGAD--EKQVWLTMLGFHFGLKTVAKSTFDL 311
Query: 310 QFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSS---KNKSDYVKNV 366
FPELGL ED EMSW ES Y G LN +KF K K D K
Sbjct: 312 LFPELGLVEEDYLEMSWGESF----AYLAGLETVSQLNNRF-LKFDERAFKTKVDLTKEP 366
Query: 367 IPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEG 426
+P KA + ++ N ++ N +GG+MS+IS T FPHR+G ++Y W +
Sbjct: 367 LPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE 426
Query: 427 INSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADV---YG 483
+ + Y M P+VS +PR + N+ DLD+G NKT + ++ +G
Sbjct: 427 QKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWG 486
Query: 484 AKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPPGLVNF 520
YF NY+RL+ KT +DP N F + QSIPP + NF
Sbjct: 487 ESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP-MANF 522
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 332 bits (850), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 200/512 (39%), Positives = 279/512 (54%), Gaps = 28/512 (5%)
Query: 12 FLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSH 71
L CL + V S ++S F L+ I+N F KP AI+ P +
Sbjct: 2 LLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 57
Query: 72 VQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAG 131
+ TI+C + +R+RSGGH YEGLSYTS PF+++D+ NL ++ I++ ETAWV++G
Sbjct: 58 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESG 117
Query: 132 ATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQLVDV 191
+T+GELYY I+ S F AG CPT+ + RKYGL++DNVVDA L+D
Sbjct: 118 STLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDA 177
Query: 192 EGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTT--DQATSQ 249
G IL+R++MGED+FWAIRGGGG +G I AWKIKL+ VPEKVTVF V K D+ATS
Sbjct: 178 NGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS- 236
Query: 250 GATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQ 309
+++KWQ VA +L + + V+ G+ EK V ++ +G G + +
Sbjct: 237 ----LLHKWQFVAEELEEDFTL----SVLGGAD--EKQVWLTMLGFHFGLKTVAKSTFDL 286
Query: 310 QFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSS---KNKSDYVKNV 366
FPELGL ED EMSW ES Y G LN +KF K K D K
Sbjct: 287 LFPELGLVEEDYLEMSWGESF----AYLAGLETVSQLNNRF-LKFDERAFKTKVDLTKEP 341
Query: 367 IPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEG 426
+P KA + ++ N ++ N +GG+MS+IS T FPHR+G ++Y W +
Sbjct: 342 LPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE 401
Query: 427 INSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADV---YG 483
+ + Y M P+VS +PR + N+ DLD+G NKT + ++ +G
Sbjct: 402 QKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWG 461
Query: 484 AKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPP 515
YF NY+RL+ KT +DP N F + QSIPP
Sbjct: 462 ESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 493
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 328 bits (842), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 201/517 (38%), Positives = 281/517 (54%), Gaps = 29/517 (5%)
Query: 12 FLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSH 71
L CL + V S ++S F L+ I+N F KP AI+ P +
Sbjct: 2 LLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 57
Query: 72 VQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAG 131
+ TI+C + +R+RSGGH YEGLSYTS PF+++D+ NL ++ I++ ETAWV++G
Sbjct: 58 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESG 117
Query: 132 ATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQLVDV 191
+T+GELYY I+ S F AG PT+ + RKYGL++DNVVDA L+D
Sbjct: 118 STLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDA 177
Query: 192 EGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTT--DQATSQ 249
G IL+R++MGED+FWAIRGGGG +G I AWKIKL+ VPEKVTVF V K D+ATS
Sbjct: 178 NGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS- 236
Query: 250 GATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQ 309
+++KWQ VA +L + + V+ G+ EK V ++ +G G + +
Sbjct: 237 ----LLHKWQFVAEELEEDFTL----SVLGGAD--EKQVWLTMLGFHFGLKTVAKSTFDL 286
Query: 310 QFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSS---KNKSDYVKNV 366
FPELGL ED EMSW ES Y G LN +KF K K D K
Sbjct: 287 LFPELGLVEEDYLEMSWGESF----AYLAGLETVSQLNNRF-LKFDERAFKTKVDLTKEP 341
Query: 367 IPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEG 426
+P KA + ++ N ++ N +GG+MS+IS T FPHR+G ++Y W +
Sbjct: 342 LPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE 401
Query: 427 INSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADV---YG 483
+ + Y M P+VS +PR + N+ DLD+G NKT + ++ +G
Sbjct: 402 QKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWG 461
Query: 484 AKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPPGLVNF 520
YF NY+RL+ KT +DP N F + QSIPP + NF
Sbjct: 462 ESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP-MANF 497
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 328 bits (841), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 199/512 (38%), Positives = 278/512 (54%), Gaps = 28/512 (5%)
Query: 12 FLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSH 71
L CL + V S ++S F L+ I+N F KP AI+ P +
Sbjct: 5 LLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 60
Query: 72 VQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAG 131
+ TI+C + +R+RSGG YEGLSYTS PF+++D+ NL ++ I++ ETAWV++G
Sbjct: 61 LSNTIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESG 120
Query: 132 ATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQLVDV 191
+T+GELYY I+ S F AG CPT+ + RKYGL++DNVVDA L+D
Sbjct: 121 STLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDA 180
Query: 192 EGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTT--DQATSQ 249
G IL+R++MGED+FWAIRGGGG +G I AWKIKL+ VPEKVTVF V K D+ATS
Sbjct: 181 NGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS- 239
Query: 250 GATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQ 309
+++KWQ VA +L + + V+ G+ EK V ++ +G G + +
Sbjct: 240 ----LLHKWQFVAEELEEDFTL----SVLGGAD--EKQVWLTMLGFHFGLKTVAKSTFDL 289
Query: 310 QFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSS---KNKSDYVKNV 366
FPELGL ED EMSW ES Y G LN +KF K K D K
Sbjct: 290 LFPELGLVEEDYLEMSWGESF----AYLAGLETVSQLNNRF-LKFDERAFKTKVDLTKEP 344
Query: 367 IPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEG 426
+P KA + ++ N ++ N +GG+MS+IS T FPHR+G ++Y W +
Sbjct: 345 LPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE 404
Query: 427 INSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADV---YG 483
+ + Y M P+VS +PR + N+ DLD+G NKT + ++ +G
Sbjct: 405 QKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWG 464
Query: 484 AKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPP 515
YF NY+RL+ KT +DP N F + QSIPP
Sbjct: 465 ESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 496
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 328 bits (840), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 199/512 (38%), Positives = 278/512 (54%), Gaps = 28/512 (5%)
Query: 12 FLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSH 71
L CL + V S ++S F L+ I+N F KP AI+ P +
Sbjct: 2 LLSCLTFNGVRNHTVFS----ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEE 57
Query: 72 VQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAG 131
+ TI+C + +R+RSGGH YEGLSYTS PF+++D+ NL ++ I++ ETAWV++G
Sbjct: 58 LSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESG 117
Query: 132 ATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQLVDV 191
+T+GELYY I+ S F AG PT+ + RKYGL++DNVVDA L+D
Sbjct: 118 STLGELYYAITESSSKLGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDA 177
Query: 192 EGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTT--DQATSQ 249
G IL+R++MGED+FWAIRGGGG +G I AWKIKL+ VPEKVTVF V K D+ATS
Sbjct: 178 NGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATS- 236
Query: 250 GATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQ 309
+++KWQ VA +L + + V+ G+ EK V ++ +G G + +
Sbjct: 237 ----LLHKWQFVAEELEEDFTL----SVLGGAD--EKQVWLTMLGFHFGLKTVAKSTFDL 286
Query: 310 QFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSS---KNKSDYVKNV 366
FPELGL ED EMSW ES Y G LN +KF K K D K
Sbjct: 287 LFPELGLVEEDYLEMSWGESF----AYLAGLETVSQLNNRF-LKFDERAFKTKVDLTKEP 341
Query: 367 IPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEG 426
+P KA + ++ N ++ N +GG+MS+IS T FPHR+G ++Y W +
Sbjct: 342 LPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSE 401
Query: 427 INSTNLYTSKIRDFYASMAPYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADV---YG 483
+ + Y M P+VS +PR + N+ DLD+G NKT + ++ +G
Sbjct: 402 QKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWG 461
Query: 484 AKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPP 515
YF NY+RL+ KT +DP N F + QSIPP
Sbjct: 462 ESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 493
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 100/476 (21%), Positives = 196/476 (41%), Gaps = 60/476 (12%)
Query: 60 PLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDI 119
P AI P + A ++C AG+++ + GGH Y + ++L++ + ++ +
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 120 NIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLS 179
+ + A +Q GA +G ++ + A G CP + +GL+
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQGN-RALSHGTCPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 180 SDNVVDAQLVDVEGRILN-RESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFN 238
D ++ A +V + I++ E+ DLFWA+RGGGG F ++ ++ PE +T +
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGG-GFAIVSEFEFNTFEAPEIITTYQ 219
Query: 239 VGKTTDQATSQGATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLG 298
V T ++ + W Q +P EL +R +N + +++ G F G
Sbjct: 220 VTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLE---INAN-------ALNWEGNFFG 267
Query: 299 QISSLIPLMNQQFPELGLRA--EDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSS 356
L ++ + G ++ E W + Y G + + N F
Sbjct: 268 NAKDLKKILQPIMKKAGGKSTISKLVETDWYGQI---NTYLYGADLNITYNYDVHEYF-- 322
Query: 357 KNKSDYVKNVIPKKALEEIWTKMINFG----------NMWMQWNPYGGR---MSEISESE 403
Y ++ + +E +++ W+QW+ +GG+ ++ +S E
Sbjct: 323 -----YANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDE 377
Query: 404 TAFPHRAGNLFKIQYCALWEEEGINSTNLYTSK----IRDFYASMAPYVSNSPREAFHNY 459
TA+ HR Y ++++ E N+T+ Y ++ F A++ + + + NY
Sbjct: 378 TAYAHRDQLWLWQFYDSIYDYE--NNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNY 435
Query: 460 RDLDIGNSYPSNKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPP 515
D T+L ++ Y++GN ++L +K K DP + F N S+ P
Sbjct: 436 AD-----------TTLTKEE--AQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEP 478
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 99/476 (20%), Positives = 195/476 (40%), Gaps = 60/476 (12%)
Query: 60 PLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDI 119
P AI P + A ++C AG+++ + GGH Y + ++L++ + ++ +
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 120 NIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLS 179
+ + A +Q GA +G ++ + A G P + +GL+
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQGN-RALSHGTAPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 180 SDNVVDAQLVDVEGRILN-RESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFN 238
D ++ A +V + I++ E+ DLFWA+RGGGG F ++ ++ PE +T +
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGG-GFAIVSEFEFNTFEAPEIITTYQ 219
Query: 239 VGKTTDQATSQGATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFIGMFLG 298
V T ++ + W Q +P EL +R +N + +++ G F G
Sbjct: 220 VTTTWNRKQHVAGLKALQDWAQ--NTMPRELSMRLE---INAN-------ALNWEGNFFG 267
Query: 299 QISSLIPLMNQQFPELGLRA--EDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSS 356
L ++ + G ++ E W + Y G + + N F
Sbjct: 268 NAKDLKKILQPIMKKAGGKSTISKLVETDWYGQI---NTYLYGADLNITYNYDVHEYF-- 322
Query: 357 KNKSDYVKNVIPKKALEEIWTKMINFG----------NMWMQWNPYGGR---MSEISESE 403
Y ++ + +E +++ W+QW+ +GG+ ++ +S E
Sbjct: 323 -----YANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWWIQWDFHGGKNSALAAVSNDE 377
Query: 404 TAFPHRAGNLFKIQYCALWEEEGINSTNLYTSK----IRDFYASMAPYVSNSPREAFHNY 459
TA+ HR Y ++++ E N+T+ Y ++ F A++ + + + NY
Sbjct: 378 TAYAHRDQLWLWQFYDSIYDYE--NNTSPYPESGFEFMQGFVATIEDTLPEDRKGKYFNY 435
Query: 460 RDLDIGNSYPSNKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSIPP 515
D T+L ++ Y++GN ++L +K K DP + F N S+ P
Sbjct: 436 AD-----------TTLTKEE--AQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEP 478
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 119/482 (24%), Positives = 204/482 (42%), Gaps = 73/482 (15%)
Query: 60 PLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKID- 118
P AI +H+Q+ ++C+ + L++ +SGGH Y + +++ + R ID
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQL--DRMIDV 94
Query: 119 INIADET--AWVQAGATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKY 176
I+ D+T A V+ GA +G L + N A G CP + +
Sbjct: 95 ISYNDKTGIAHVEPGARLGHL-ATVLNDKYGRAISHGTCPGVGISGHFAHGGFGFSSHMH 153
Query: 177 GLSSDNVVDAQLVDVEGRILNRESM-GEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVT 235
GL+ D+VV +V +GRI+ + DLFW I+ G G +FG++ WK+ P+ +T
Sbjct: 154 GLAVDSVVGVTVVLADGRIVEASATENADLFWGIK-GAGSNFGIVAVWKLATFPAPKVLT 212
Query: 236 VFNVGKTTDQATS--QGATDVIYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKTVMVSFI 293
F V TS +G V + VAP+ E+ R + G+ +E
Sbjct: 213 RFGVTLNWKNKTSALKGIEAVEDYARWVAPR---EVNFR-IGDYGAGNPGIE-------- 260
Query: 294 GMFLGQI----SSLIPLMNQQFPELGLRAEDCHEMSWVESTLFWDQYR-----IGTSIKV 344
G++ G ++ PL++ P G ++W+ES L + + ++
Sbjct: 261 GLYYGTPEQWRAAFQPLLD-TLPA-GYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVEN 318
Query: 345 LLNRSTDVKFSSKNKSDYVKNV------IPKKALEEIWTKMINFGNMWMQWNPYGGRMSE 398
+S +K K D VKN + K + W + Q + +GG+ S+
Sbjct: 319 FYAKSLTLK---SIKGDAVKNFVDYYFDVSNKVKDRFW---------FYQLDVHGGKNSQ 366
Query: 399 ISE---SETAFPHRAGNLFKIQYCALWEEEGINSTNLYTS-KIRDFYA-SMAPYVSNSPR 453
+++ +ETA+PHR L+ IQ+ ++ N T TS K D + S+ + S
Sbjct: 367 VTKVTNAETAYPHR-DKLWLIQFYDRYDN---NQTYPETSFKFLDGWVNSVTKALPKSDW 422
Query: 454 EAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSI 513
+ NY D + Y + Y+ N RL ++K K DP + F Q++
Sbjct: 423 GMYINYADPRMDRDYATK-------------VYYGENLARLQKLKAKFDPTDRFYYPQAV 469
Query: 514 PP 515
P
Sbjct: 470 RP 471
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 117/494 (23%), Positives = 206/494 (41%), Gaps = 63/494 (12%)
Query: 59 KPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKID 118
+P + + V + + AG + +RSGGH +EG V V+DM +R++
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAV-RAVIDMSQMRQVF 113
Query: 119 INIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGL 178
+ V+ GAT+GE Y + + PAGVCP + L R+ G+
Sbjct: 114 YDSGKRAFAVEPGATLGETYRALY-LDWGVTIPAGVCPQVGVGGHVLGGGYGPLSRRDGV 172
Query: 179 SSDNV--VDAQLVDVEGRI--LNRESMGED----LFWAIRGGGGESFGVILAWKIKLVSV 230
+D++ V+ +VD GR + S +D L+WA GGGG +FG++ + +
Sbjct: 173 VADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFR---- 228
Query: 231 PEKVTVFNVGKTTDQATSQGATDV---IYKWQQVAPKLPGELFIRAMPKVVNGSRPLEKT 287
T G Q + T I W A L E F R +++ ++
Sbjct: 229 ----TPGATGTDPSQLLPKAPTSTLRHIVTWDWSA--LTEEAFTR----IIDNHGAWHQS 278
Query: 288 VMVSFIGMFLGQISSLIPLMNQQFPELGLRAEDCHEMSWVESTL--FWDQYRIGTSIKVL 345
S G + S+ L ++ ++ L + + E+ L F GT ++
Sbjct: 279 --NSAAGTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPA 336
Query: 346 LNRSTDV--------KFS------SKNKSDYVKNVIPKKALEEIWTKMINFGNMWMQWN- 390
+ RST+ KF +K+K Y++ ++ + +W + +
Sbjct: 337 VQRSTEPWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQVWGEVSL 396
Query: 391 -PYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEGINSTNLYTSKIRDFYASM----- 444
YGG+++ + E+ TA R ++ K+ A W + + NL + IR+ Y +
Sbjct: 397 YSYGGKVNSVPETATATAQR-DSIIKVWMSATWMDPAHDDANL--AWIREIYREIFATTG 453
Query: 445 -APYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDP 503
P + F NY D+D+ + N + + + Y+KGNY RL +VK + DP
Sbjct: 454 GVPVPDDRTEGTFINYPDVDLVDER-WNTSGV-----PWYTLYYKGNYPRLQKVKARWDP 507
Query: 504 FNFFKNEQSI-PPG 516
+ F++ S+ PPG
Sbjct: 508 RDVFRHALSVRPPG 521
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 16/215 (7%)
Query: 24 SNPIS---ELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSN 80
+ P+S E+IY ++S F ++ N I + R L +P I V +++ +
Sbjct: 7 ATPLSIQGEVIYP-DDSGFDAIAN--IWDGRHLQ----RPSLIARCLSAGDVAKSVRYAC 59
Query: 81 QAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGELYYQ 140
GLE+ +RSGGH+ G Y + +VLD+ + I I+ A A + G G+L +
Sbjct: 60 DNGLEISVRSGGHNPNG--YATNDGGIVLDLRLMNSIHIDTAGSRARIGGGVISGDLVKE 117
Query: 141 ISNVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQLVDVEGRIL-NRE 199
+ A G+ P + L KYGL+SDN++ A LV G ++ +
Sbjct: 118 AAKFGL--AAVTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSD 175
Query: 200 SMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKV 234
+LFWA+R G G +FGV+ +++L +P K+
Sbjct: 176 DERPELFWAVR-GAGPNFGVVTEVEVQLYELPRKM 209
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 120/505 (23%), Positives = 209/505 (41%), Gaps = 110/505 (21%)
Query: 71 HVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQA 130
V ++ + + G + +RSGGH +E V V++DM L +I + + ++
Sbjct: 69 QVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDVK-VIIDMSLLTEIAYDPSMNAFLIEP 127
Query: 131 GATIGELYYQIS---NVSKLHAFPAGVCPTIXXXXXXXXXXXXNLMRKYGLSSDNVVDAQ 187
G T+ E+Y ++ NV+ P GVC + L R++G D + +
Sbjct: 128 GNTLSEVYEKLYLGWNVT----IPGGVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVE 183
Query: 188 LVDV----EGRIL----NRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKV----- 234
+V V + R++ R+ DL+WA GGGG +FGV+ + ++ VPE V
Sbjct: 184 VVVVNKQGKARVIVATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMR---VPEDVGRNPE 240
Query: 235 --------------TVFNVGKTTDQATSQ------------GATDVIYK--WQQ--VAPK 264
F+ T+ A S+ D Y W Q + +
Sbjct: 241 RLLPKPPATLLTSTVTFDWAGMTEAAFSRLLRNHGEWYERNSGPDSPYTGLWSQLMIGNE 300
Query: 265 LPG---ELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQQFPELGLRAEDC 321
+PG F+ MP V+ +RP + ++ + I + + + PE
Sbjct: 301 VPGMGESGFM--MPIQVDATRPDARRLLDAHIEAVIDGVPP------AEVPE-------P 345
Query: 322 HEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSSKNKSDYVKNVIPKKALEEIWTKM-- 379
E W+ ST R G +SK K+ Y++ + + ++ ++ M
Sbjct: 346 IEQRWLAST----PGRGGRGP------------ASKTKAGYLRKRLTDRQIQAVYENMTH 389
Query: 380 ---INFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEGINSTNLYTSK 436
I++G +W+ YGG+++ + + TA P R + K+ Y W G + +L +
Sbjct: 390 MDGIDYGAVWLIG--YGGKVNTVDPAATALPQRDA-ILKVNYITGWANPGNEAKHL--TW 444
Query: 437 IRDFYASM------APYVSNSPREAFHNYRDLDIGNSYPSNKTSLLRDADVYGAKYFKGN 490
+R YA + P ++ A+ NY D D+ + P TS + D+Y +KGN
Sbjct: 445 VRKLYADVYAETGGVPVPNDVSDGAYINYPDSDLAD--PGLNTSGVPWHDLY----YKGN 498
Query: 491 YKRLVEVKTKVDPFNFFKNEQSIPP 515
+ RL +VK DP N F + SI P
Sbjct: 499 HPRLRKVKAAYDPRNHFHHALSIRP 523
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 119/511 (23%), Positives = 197/511 (38%), Gaps = 77/511 (15%)
Query: 45 AYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGH---DYEGLSYT 101
++ N RF+ +P P V A+++ + G + RSGGH D+ G
Sbjct: 24 SHSDNHRFVV----EPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRR 79
Query: 102 STVPFVVLDMFNLRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIXXX 161
+VLD+ NL I V +GAT+ ++ + A P G C +
Sbjct: 80 D----LVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNA-ALPLGACSAVGMG 134
Query: 162 XXXXXXXXXNLMRKYGLSSDNV--VDAQLVD-------VEGRILNRESMGEDLFWAIRGG 212
L R+ GL D++ V+ +VD V R + +GE LFWA GG
Sbjct: 135 GLVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGDLGE-LFWAHTGG 193
Query: 213 GGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQGATDVIYKWQQVAPKLPGELFIR 272
GG +FGV+ A++ + PE + VG A V++ W + + R
Sbjct: 194 GGGNFGVVTAYEFR---SPEHLATEPVG-LPRAAGRLHVQKVVFPWAMIDETSFVTVMRR 249
Query: 273 AMPKVVNGSRP--LEKTVMVSFIGMFLGQISS-LIPLMNQQFPELGLRAEDCHE------ 323
S P E ++ +F F+ +SS ++ LM QQ ++ E
Sbjct: 250 FFEWHERHSEPGSPESSLFATF---FVNHVSSGVLQLMVQQDADVDPEGEILARFVASLT 306
Query: 324 -------------MSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSSKNKSDYVKNVIPKK 370
MSW+ T + Q G V+ RS +KS Y P
Sbjct: 307 EGTGVVGIPRGGVMSWLTGTRYMSQADCG---DVMGARSA-------SKSAY-HRAAPTD 355
Query: 371 ALEEIWTKMINFGN----MWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEG 426
+ + ++ + ++ +N YGG ++ S+ A P R ++ K + + W++
Sbjct: 356 EQLSVLHRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQR-DSVVKSSWFSAWQDAE 414
Query: 427 INSTNL--YTSKIRDFYASMAPYVSNSPRE--AFHNYRDLDIGNSYPSNKTSLLRDADVY 482
++ +L +F+A R + NY D D+ + P+ R + +
Sbjct: 415 LDELHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADLLD--PARN----RSGEPW 468
Query: 483 GAKYFKGNYKRLVEVKTKVDPFNFFKNEQSI 513
Y+K NY RL K DP N F + SI
Sbjct: 469 HHLYYKDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 48 KNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFV 107
+N RF+ P+ + +V + ++ + + ++G + +RSGGH YE S V V
Sbjct: 51 ENLRFV--GDPEEIHLV--GSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV-RV 105
Query: 108 VLDMFNLRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIXXXXXXXXX 167
V+DM L + + V+AGAT+G +Y + V + P G CP +
Sbjct: 106 VMDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVWGV-TLPGGACPDVGAGGHILGG 164
Query: 168 XXXNLMRKYGLSSD--NVVDAQLVDVEGR----ILNRE--SMGEDLFWAI 209
L R +G D + V+ +VD G I RE DL+WA
Sbjct: 165 GYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAH 214
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 25/179 (13%)
Query: 351 DVKFSSKNKSDYVKNVIPKKALEEIWTKMINFGNMWMQWNP--------YGGRMSEISES 402
D+ +K K+ Y + + + ++T++ + NP YGG+++ +
Sbjct: 362 DMTGRAKIKAAYARRSFDDRQIGTLYTRLTSTDYD----NPAGVVALIAYGGKVNAVPAD 417
Query: 403 ETAFPHRAGNLFKIQYCALWEEEGINSTNLYTSK--IRDFYASMA--PYVSNSPREAFHN 458
TA R ++ KI Y WE+ + ++ + RD YA P + A+ N
Sbjct: 418 RTAVAQR-DSILKIVYVTTWEDPAQDPVHVRWIRELYRDVYADTGGVPVPGGAADGAYVN 476
Query: 459 YRDLDIGNSYPSNKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQS--IPP 515
Y D+D+ + N + + + Y+K Y RL VK + DP N F++ S +PP
Sbjct: 477 YPDVDLADE-EWNTSGV-----PWSELYYKDAYPRLQAVKARWDPRNVFRHALSVRVPP 529
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 83/205 (40%), Gaps = 11/205 (5%)
Query: 43 LNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTS 102
L AYI R L PL ++ P V A K +N+A + L + G G T
Sbjct: 37 LEAYITEERNLYRGH-SPL-VLRPGSTEEVVAICKLANEARVALVPQGGNTGLVG-GQTP 93
Query: 103 TVPFVVLDMFNLRKI-DINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIXXX 161
VV+ + KI +I+ + T V+AGA + + + + V +L G +
Sbjct: 94 HNGEVVISLKRXDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIG 153
Query: 162 XXXXXXXXXNLMRKYGLSSDNVVDAQLVDVEGRILN------RESMGEDLFWAIRGGGGE 215
YGL+ D + ++V +GR+ N +++ G DL G G
Sbjct: 154 GNLSTNAGGTAALAYGLARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEG- 212
Query: 216 SFGVILAWKIKLVSVPEKVTVFNVG 240
+ G+I A +KL P V VG
Sbjct: 213 TLGIITAATLKLFPKPRAVETAFVG 237
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 266 PGELFIRAMPKVVNGSRPLEKTVMVSFIGMF--------LGQISSLIPLMNQQFPELGLR 317
PG + + K ++GS+ L+ + SFIG+ G +MN Q+ E R
Sbjct: 406 PGHVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAPGRYDIMNLQYTEAN-R 464
Query: 318 AEDCHEMSWVESTLFWDQYRIGTSIKVLLNR 348
+ H +W E L D Y+I + L+ R
Sbjct: 465 YDYVHVGTWHEGVLNIDDYKIQMNKSGLVPR 495
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,603,098
Number of Sequences: 62578
Number of extensions: 639038
Number of successful extensions: 1494
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1406
Number of HSP's gapped (non-prelim): 29
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)