Query 035812
Match_columns 520
No_of_seqs 325 out of 2200
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 7.7E-38 1.7E-42 329.9 41.2 203 28-242 40-253 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 4.3E-33 9.4E-38 291.9 33.3 197 51-263 6-205 (438)
3 PLN02805 D-lactate dehydrogena 100.0 8.4E-33 1.8E-37 296.1 23.3 182 58-243 132-320 (555)
4 TIGR01676 GLDHase galactonolac 100.0 3.6E-32 7.8E-37 286.6 22.0 196 51-262 53-251 (541)
5 COG0277 GlcD FAD/FMN-containin 100.0 1.5E-31 3.3E-36 285.4 27.2 184 56-242 28-218 (459)
6 PRK11230 glycolate oxidase sub 100.0 6.3E-32 1.4E-36 287.9 22.9 185 56-242 52-242 (499)
7 TIGR01679 bact_FAD_ox FAD-link 100.0 9.7E-31 2.1E-35 274.0 20.4 175 51-234 3-179 (419)
8 TIGR01677 pln_FAD_oxido plant- 100.0 2.3E-30 4.9E-35 276.8 23.0 181 51-234 23-215 (557)
9 TIGR00387 glcD glycolate oxida 100.0 4.9E-30 1.1E-34 269.0 19.7 179 63-243 1-186 (413)
10 PRK11282 glcE glycolate oxidas 100.0 1E-29 2.3E-34 257.5 19.3 167 68-239 3-178 (352)
11 KOG1231 Proteins containing th 100.0 1E-28 2.3E-33 245.7 21.0 175 55-232 59-240 (505)
12 PLN02465 L-galactono-1,4-lacto 100.0 3E-28 6.6E-33 258.9 22.5 177 51-234 88-267 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 4.2E-27 9E-32 210.0 13.3 136 60-197 1-137 (139)
14 PRK13905 murB UDP-N-acetylenol 99.9 5.6E-25 1.2E-29 220.4 13.7 163 57-231 28-193 (298)
15 PRK11183 D-lactate dehydrogena 99.9 6.3E-23 1.4E-27 213.3 17.9 183 57-243 36-278 (564)
16 PRK14652 UDP-N-acetylenolpyruv 99.9 6.5E-22 1.4E-26 197.5 14.1 163 56-231 32-196 (302)
17 TIGR00179 murB UDP-N-acetyleno 99.9 7.3E-22 1.6E-26 196.0 13.8 163 56-229 9-174 (284)
18 PRK12436 UDP-N-acetylenolpyruv 99.9 9.1E-22 2E-26 196.9 14.0 163 56-230 33-197 (305)
19 PRK13906 murB UDP-N-acetylenol 99.9 2.3E-21 4.9E-26 194.1 13.7 161 58-230 35-197 (307)
20 KOG4730 D-arabinono-1, 4-lacto 99.9 6.8E-21 1.5E-25 190.2 15.7 176 58-239 48-226 (518)
21 PRK13903 murB UDP-N-acetylenol 99.9 7.7E-21 1.7E-25 193.0 15.8 165 56-231 29-197 (363)
22 KOG1232 Proteins containing th 99.8 4.5E-21 9.7E-26 186.9 11.1 187 48-236 78-271 (511)
23 KOG1233 Alkyl-dihydroxyacetone 99.8 1.7E-20 3.6E-25 183.1 14.7 189 53-242 154-351 (613)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 3.2E-19 7E-24 177.7 16.8 164 57-230 18-192 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 1.4E-17 3.1E-22 165.3 13.6 159 58-231 32-194 (297)
26 PRK14650 UDP-N-acetylenolpyruv 99.7 2.5E-16 5.5E-21 155.9 13.3 162 58-231 31-195 (302)
27 COG0812 MurB UDP-N-acetylmuram 99.7 4E-16 8.7E-21 151.9 14.4 165 56-230 17-183 (291)
28 PRK00046 murB UDP-N-acetylenol 99.7 3.2E-16 6.9E-21 157.5 12.3 161 58-230 19-188 (334)
29 PF08031 BBE: Berberine and be 99.6 5.2E-17 1.1E-21 115.5 2.0 47 455-514 1-47 (47)
30 PRK14648 UDP-N-acetylenolpyruv 99.6 2.9E-15 6.3E-20 150.2 13.5 166 58-231 28-237 (354)
31 PRK14651 UDP-N-acetylenolpyruv 99.5 2E-13 4.3E-18 133.4 12.4 149 59-230 20-170 (273)
32 KOG1262 FAD-binding protein DI 99.5 2.6E-14 5.6E-19 140.5 6.0 127 107-235 104-233 (543)
33 PRK13904 murB UDP-N-acetylenol 99.2 6.2E-11 1.4E-15 114.9 9.9 142 59-231 18-160 (257)
34 PF00941 FAD_binding_5: FAD bi 94.9 0.034 7.4E-07 51.2 4.5 75 60-140 2-80 (171)
35 PRK09799 putative oxidoreducta 94.7 0.1 2.2E-06 51.3 7.5 140 62-226 4-155 (258)
36 TIGR03312 Se_sel_red_FAD proba 93.4 0.26 5.7E-06 48.5 7.5 142 63-226 4-154 (257)
37 TIGR02963 xanthine_xdhA xanthi 91.8 0.44 9.6E-06 51.0 7.2 80 60-143 192-273 (467)
38 PLN00107 FAD-dependent oxidore 90.8 0.79 1.7E-05 44.5 7.1 22 489-510 176-197 (257)
39 PRK09971 xanthine dehydrogenas 90.2 0.5 1.1E-05 47.4 5.5 74 62-139 6-82 (291)
40 TIGR03195 4hydrxCoA_B 4-hydrox 90.0 0.56 1.2E-05 47.6 5.7 74 62-139 6-81 (321)
41 PF09265 Cytokin-bind: Cytokin 89.8 0.11 2.4E-06 51.3 0.4 31 482-513 250-280 (281)
42 TIGR03199 pucC xanthine dehydr 87.5 0.73 1.6E-05 45.5 4.5 70 66-139 1-73 (264)
43 PLN02906 xanthine dehydrogenas 80.6 2.5 5.4E-05 51.3 5.7 79 61-143 229-309 (1319)
44 PLN00192 aldehyde oxidase 80.1 4 8.6E-05 49.6 7.2 84 60-144 233-317 (1344)
45 TIGR02969 mam_aldehyde_ox alde 78.0 5.3 0.00011 48.6 7.3 78 61-142 237-316 (1330)
46 PF04030 ALO: D-arabinono-1,4- 77.8 1.4 2.9E-05 43.4 2.0 27 482-510 228-254 (259)
47 PF02913 FAD-oxidase_C: FAD li 73.7 3.8 8.3E-05 39.2 3.9 27 482-508 217-244 (248)
48 COG4630 XdhA Xanthine dehydrog 72.3 8.1 0.00017 39.5 5.7 138 61-210 204-352 (493)
49 COG1319 CoxM Aerobic-type carb 68.7 18 0.00038 36.1 7.3 76 60-139 3-81 (284)
50 TIGR01677 pln_FAD_oxido plant- 68.4 9 0.0002 42.1 5.7 22 489-510 482-503 (557)
51 COG4981 Enoyl reductase domain 67.7 17 0.00036 39.1 7.1 108 10-136 111-226 (717)
52 COG0351 ThiD Hydroxymethylpyri 62.9 25 0.00055 34.5 7.0 91 29-146 133-226 (263)
53 PF03614 Flag1_repress: Repres 61.0 33 0.00071 30.4 6.5 37 63-99 9-46 (165)
54 TIGR01679 bact_FAD_ox FAD-link 60.9 5.1 0.00011 42.4 2.0 25 486-511 389-413 (419)
55 KOG4730 D-arabinono-1, 4-lacto 60.1 4.6 0.0001 42.2 1.4 22 489-510 485-506 (518)
56 TIGR00387 glcD glycolate oxida 55.0 7.1 0.00015 41.2 1.9 27 482-508 383-410 (413)
57 PF02601 Exonuc_VII_L: Exonucl 43.7 36 0.00077 34.5 4.9 57 30-93 19-87 (319)
58 COG4359 Uncharacterized conser 40.0 31 0.00067 31.9 3.2 25 72-96 78-102 (220)
59 COG1519 KdtA 3-deoxy-D-manno-o 39.5 1.6E+02 0.0036 30.9 8.8 34 59-92 260-293 (419)
60 PRK11282 glcE glycolate oxidas 39.3 20 0.00042 37.0 2.2 22 488-509 323-345 (352)
61 KOG3282 Uncharacterized conser 38.2 40 0.00087 31.0 3.7 37 51-89 118-154 (190)
62 PRK11230 glycolate oxidase sub 37.9 20 0.00043 38.9 2.0 32 482-513 440-472 (499)
63 PLN02805 D-lactate dehydrogena 36.8 23 0.0005 38.9 2.4 33 482-514 517-550 (555)
64 PRK00286 xseA exodeoxyribonucl 33.1 53 0.0011 34.9 4.3 56 30-92 140-203 (438)
65 COG1570 XseA Exonuclease VII, 29.5 66 0.0014 34.0 4.1 56 30-92 140-204 (440)
66 TIGR01676 GLDHase galactonolac 26.3 41 0.0009 36.7 2.1 20 491-510 515-534 (541)
67 cd02429 PTH2_like Peptidyl-tRN 26.3 1.2E+02 0.0025 26.0 4.4 31 59-89 55-85 (116)
68 cd07033 TPP_PYR_DXS_TK_like Py 26.2 98 0.0021 27.6 4.2 29 62-90 126-154 (156)
69 TIGR00237 xseA exodeoxyribonuc 25.7 53 0.0011 34.9 2.7 56 30-92 134-198 (432)
70 COG1154 Dxs Deoxyxylulose-5-ph 25.5 4.7E+02 0.01 29.0 9.7 78 59-141 440-520 (627)
71 PLN02465 L-galactono-1,4-lacto 25.3 44 0.00095 36.8 2.1 26 482-510 539-564 (573)
72 COG2144 Selenophosphate synthe 25.1 1.5E+02 0.0033 29.6 5.4 47 31-90 242-289 (324)
73 COG0279 GmhA Phosphoheptose is 24.5 53 0.0012 29.9 2.1 81 5-92 52-145 (176)
74 PF02779 Transket_pyr: Transke 23.5 1.2E+02 0.0027 27.6 4.5 32 61-92 139-172 (178)
75 cd02742 GH20_hexosaminidase Be 21.4 92 0.002 31.3 3.4 29 66-94 68-98 (303)
76 PRK04322 peptidyl-tRNA hydrola 21.4 1.8E+02 0.004 24.6 4.7 37 58-94 46-83 (113)
77 cd06568 GH20_SpHex_like A subg 21.3 92 0.002 31.8 3.4 28 67-94 72-101 (329)
78 PF04472 DUF552: Protein of un 20.8 1E+02 0.0022 23.7 2.8 33 62-116 2-34 (73)
79 KOG2499 Beta-N-acetylhexosamin 20.8 86 0.0019 33.4 3.0 28 67-94 247-276 (542)
80 KOG4656 Copper chaperone for s 20.7 1.9E+02 0.0042 27.2 4.9 39 114-153 34-72 (247)
81 cd06565 GH20_GcnA-like Glycosy 20.1 1E+02 0.0022 31.0 3.4 29 66-94 56-86 (301)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=7.7e-38 Score=329.95 Aligned_cols=203 Identities=21% Similarity=0.271 Sum_probs=174.2
Q ss_pred cceEEcCCCCchHHHHHhhhcCcccCCCCCCCccEEEecCCHHHHHHHHHHHH--HCCCeEEEEeCccCCCCCcccCCCC
Q 035812 28 SELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSN--QAGLELRIRSGGHDYEGLSYTSTVP 105 (520)
Q Consensus 28 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~--~~~~~~~~~ggGh~~~g~~~~~~~~ 105 (520)
.+.+.+ ++..++.+. ..|.......|.+|++|+|++||+++|++|+ +++++|++||+|||+.|.+...+
T Consensus 40 ~~~v~~-d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~-- 110 (525)
T PLN02441 40 DGHLSF-DPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG-- 110 (525)
T ss_pred CceEEe-CHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--
Confidence 344443 455565543 3577777789999999999999999999997 67999999999999999887654
Q ss_pred eEEEEeecccc------E-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceec-CCCCCCccchhhhhcCCCCCCccccC
Q 035812 106 FVVLDMFNLRK------I-DINIADETAWVQAGATIGELYYQISNVSKLHAFP-AGVCPTIGAGGHITGGGYGNLMRKYG 177 (520)
Q Consensus 106 gvvIdl~~~~~------i-~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~G 177 (520)
|++|||++||+ + ++|.+..+|+|++|++|.++++++.++| ++.+ .+.+..++|||.+.+||+|..+.+||
T Consensus 111 GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG 188 (525)
T PLN02441 111 GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHG 188 (525)
T ss_pred eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccC
Confidence 99999999999 3 7888899999999999999999999987 3332 35666789999999999999999999
Q ss_pred ccccceeEEEEEeecccEEe-eccCCchhhhhhhccCCCCeEEEEEEEEEEEecCceEEEEEEeec
Q 035812 178 LSSDNVVDAQLVDVEGRILN-RESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKT 242 (520)
Q Consensus 178 ~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a~rG~g~g~fGivt~~~~~~~p~~~~~~~~~~~~~ 242 (520)
..+|+|++++||+++|++++ ++.+|+|||||+|||+ |+|||||++|||++|.|+.+....+.+.
T Consensus 189 ~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~ 253 (525)
T PLN02441 189 PQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYS 253 (525)
T ss_pred cHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcC
Confidence 99999999999999999998 6678999999999998 8999999999999999987655555553
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=4.3e-33 Score=291.95 Aligned_cols=197 Identities=17% Similarity=0.292 Sum_probs=171.9
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccE-EEeCCCCEEEEc
Q 035812 51 RFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-DINIADETAWVQ 129 (520)
Q Consensus 51 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~ 129 (520)
.|+.+....|.+|++|+|++||+++|++|++++++++++|+|||+.+.... + +++|||++||+| ++|+++++|+|+
T Consensus 6 nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-~--gvvIdl~~l~~i~~id~~~~~vtV~ 82 (438)
T TIGR01678 6 NWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-D--GFLIHLDKMNKVLQFDKEKKQITVE 82 (438)
T ss_pred eCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-C--eEEEEhhhcCCceEEcCCCCEEEEc
Confidence 477777889999999999999999999999999999999999999876543 3 899999999998 999999999999
Q ss_pred CCCCHHHHHHHHHhcCCcceec-CCCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEe-eccCCchhhh
Q 035812 130 AGATIGELYYQISNVSKLHAFP-AGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILN-RESMGEDLFW 207 (520)
Q Consensus 130 aG~~~~~l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~ 207 (520)
||+++.+|.+.|.++| ++++ .|.++.++|||++.+|+||. +.+||..+|+|++++||++||++++ +..+++||||
T Consensus 83 aG~~l~~L~~~L~~~G--l~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~ 159 (438)
T TIGR01678 83 AGIRLYQLHEQLDEHG--YSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQ 159 (438)
T ss_pred CCCCHHHHHHHHHHcC--CEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHH
Confidence 9999999999999987 4555 57889999999999999996 7899999999999999999999997 6667899999
Q ss_pred hhhccCCCCeEEEEEEEEEEEecCceEEEEEEeecccccccchHHHHHHHHHHHcc
Q 035812 208 AIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQGATDVIYKWQQVAP 263 (520)
Q Consensus 208 a~rG~g~g~fGivt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (520)
|.+|+. |+|||||++|||++|........ . .....++++.|++...
T Consensus 160 a~~~~~-G~lGIIt~vtl~l~p~~~l~~~~----~-----~~~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 160 AARVSL-GCLGIIVTVTIQVVPQFHLQETS----F-----VSTLKELLDNWDSHWK 205 (438)
T ss_pred HHhcCC-CceEeeEEEEEEEEeccceEEEE----e-----cCCHHHHHHHHHHHhh
Confidence 999998 89999999999999987643321 1 1224677777877544
No 3
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=8.4e-33 Score=296.07 Aligned_cols=182 Identities=23% Similarity=0.327 Sum_probs=164.1
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCHHH
Q 035812 58 PKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-DINIADETAWVQAGATIGE 136 (520)
Q Consensus 58 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~ 136 (520)
..|.+|++|+|++||+++|++|+++++|+++||||||+.|.+.... ++++|||++||+| ++|.++.+|+||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~-ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH-GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC-CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 4799999999999999999999999999999999999998876543 5899999999999 7999999999999999999
Q ss_pred HHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEe--ec----cCCchhhhhhh
Q 035812 137 LYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILN--RE----SMGEDLFWAIR 210 (520)
Q Consensus 137 l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~--~~----~~~~dl~~a~r 210 (520)
|+++|.++| +.++...++.++|||.++++++|..+.+||.++|+|++++||++||++++ .. ..++||+|+++
T Consensus 211 L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~ 288 (555)
T PLN02805 211 LNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVI 288 (555)
T ss_pred HHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhc
Confidence 999999987 56777777788999999999999999999999999999999999999995 11 24689999999
Q ss_pred ccCCCCeEEEEEEEEEEEecCceEEEEEEeecc
Q 035812 211 GGGGESFGVILAWKIKLVSVPEKVTVFNVGKTT 243 (520)
Q Consensus 211 G~g~g~fGivt~~~~~~~p~~~~~~~~~~~~~~ 243 (520)
|+. |+|||||+++||++|.|+......+.|..
T Consensus 289 Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~~ 320 (555)
T PLN02805 289 GSE-GTLGVITEVTLRLQKIPQHSVVAMCNFPT 320 (555)
T ss_pred cCC-CceEEEEEEEEEeecCCcceEEEEEEcCC
Confidence 998 89999999999999999876666666643
No 4
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=3.6e-32 Score=286.56 Aligned_cols=196 Identities=16% Similarity=0.220 Sum_probs=170.8
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccE-EEeCCCCEEEEc
Q 035812 51 RFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-DINIADETAWVQ 129 (520)
Q Consensus 51 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~ 129 (520)
+|+.+....|..+++|+|++||+++|++|++++++|+++|+|||+.+.+... +.+|||++||+| ++|.++++|+|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 5899888899999999999999999999999999999999999999877654 457999999998 999999999999
Q ss_pred CCCCHHHHHHHHHhcCCcceec-CCCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEe-eccCCchhhh
Q 035812 130 AGATIGELYYQISNVSKLHAFP-AGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILN-RESMGEDLFW 207 (520)
Q Consensus 130 aG~~~~~l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~ 207 (520)
||+++.+|.+.|.++| ++++ .|.+..++|||.+++|+||.. .+||..+|+|++++||+++|+++. +..+++||||
T Consensus 130 AG~~l~~L~~~L~~~G--lal~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 206 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYG--ITLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFF 206 (541)
T ss_pred CCCCHHHHHHHHHHcC--CEeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHH
Confidence 9999999999999987 4454 478888999999999999985 579999999999999999999997 6667899999
Q ss_pred hhhccCCCCeEEEEEEEEEEEecCceEEEEEEeecccccccchHHHHHHHHHHHc
Q 035812 208 AIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKTTDQATSQGATDVIYKWQQVA 262 (520)
Q Consensus 208 a~rG~g~g~fGivt~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (520)
|.|||+ |+|||||++|||+.|.+..... .+.. ...++++.|.++.
T Consensus 207 Aargsl-G~LGVItevTLr~~Pa~~l~~~---~~~~------~~~e~l~~~~~~~ 251 (541)
T TIGR01676 207 LARCGL-GGLGVVAEVTLQCVERQELVEH---TFIS------NMKDIKKNHKKFL 251 (541)
T ss_pred HHhcCC-CceEeEEEEEEEEEeccceeEE---EEec------CHHHHHHHHHHHH
Confidence 999998 8999999999999999874321 1111 2356666676654
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.5e-31 Score=285.41 Aligned_cols=184 Identities=30% Similarity=0.423 Sum_probs=162.7
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCH
Q 035812 56 STPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-DINIADETAWVQAGATI 134 (520)
Q Consensus 56 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~ 134 (520)
....|.+|+.|+|++||+++|++|+++++||++||+||++.|.+... . +|+|||++||+| ++|+++++++|+||+++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~-gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-G-GVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-C-cEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 34689999999999999999999999999999999999999988765 2 899999999999 89999999999999999
Q ss_pred HHHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEe--e----ccCCchhhhh
Q 035812 135 GELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILN--R----ESMGEDLFWA 208 (520)
Q Consensus 135 ~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~--~----~~~~~dl~~a 208 (520)
.+|.++|.++|+.+++.+++...++|||+++++++|..+.+||.+.|+|+++++|++||++++ . +..+.||+++
T Consensus 106 ~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l 185 (459)
T COG0277 106 EDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTAL 185 (459)
T ss_pred HHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHh
Confidence 999999999986554445555589999999999999999999999999999999999999996 2 2445899999
Q ss_pred hhccCCCCeEEEEEEEEEEEecCceEEEEEEeec
Q 035812 209 IRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKT 242 (520)
Q Consensus 209 ~rG~g~g~fGivt~~~~~~~p~~~~~~~~~~~~~ 242 (520)
+.|+. |+|||||++|+|++|.|+........+.
T Consensus 186 ~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~~ 218 (459)
T COG0277 186 FVGSE-GTLGIITEATLKLLPLPETKATAVAGFP 218 (459)
T ss_pred cccCC-ccceEEEEEEEEeccCCchheEEEEeCC
Confidence 99987 8999999999999999876555444443
No 6
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=6.3e-32 Score=287.88 Aligned_cols=185 Identities=23% Similarity=0.299 Sum_probs=162.7
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCH
Q 035812 56 STPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-DINIADETAWVQAGATI 134 (520)
Q Consensus 56 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~ 134 (520)
....|.+|++|+|++||+++|++|+++++|+++||+||++.|.+.... ++++|||++||+| ++|+++.+|+||||+++
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~~ 130 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVRN 130 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCccH
Confidence 356899999999999999999999999999999999999987665443 4899999999998 99999999999999999
Q ss_pred HHHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEeec-----cCCchhhhhh
Q 035812 135 GELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILNRE-----SMGEDLFWAI 209 (520)
Q Consensus 135 ~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~~~-----~~~~dl~~a~ 209 (520)
.+|.++|.++|+.++..+++...++|||++++++.|+.+.+||.+.|+|++++||++||++++.. ..++||+|++
T Consensus 131 ~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~ 210 (499)
T PRK11230 131 LAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALF 210 (499)
T ss_pred HHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhh
Confidence 99999999998543333455567889999999999999999999999999999999999999721 2478999999
Q ss_pred hccCCCCeEEEEEEEEEEEecCceEEEEEEeec
Q 035812 210 RGGGGESFGVILAWKIKLVSVPEKVTVFNVGKT 242 (520)
Q Consensus 210 rG~g~g~fGivt~~~~~~~p~~~~~~~~~~~~~ 242 (520)
+|+. |+|||||++|||++|.|+....+.+.|.
T Consensus 211 ~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~ 242 (499)
T PRK11230 211 TGSE-GMLGVVTEVTVKLLPKPPVARVLLASFD 242 (499)
T ss_pred ccCC-CccEEEEEEEEEEEcCCcceEEEEEECC
Confidence 9998 8999999999999999987665555553
No 7
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.97 E-value=9.7e-31 Score=273.99 Aligned_cols=175 Identities=21% Similarity=0.307 Sum_probs=154.8
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccE-EEeCCCCEEEEc
Q 035812 51 RFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-DINIADETAWVQ 129 (520)
Q Consensus 51 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~ 129 (520)
.|+.+....|.+|++|+|++||+++|++|++ +++++|+|||+.+.+. .+ +++|||++||+| ++|+++++|+||
T Consensus 3 nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~-~~--g~~idl~~l~~i~~~d~~~~~v~v~ 76 (419)
T TIGR01679 3 NWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC-TD--GTMISLTGLQGVVDVDQPTGLATVE 76 (419)
T ss_pred CCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc-CC--CEEEEhhHcCCceeecCCCCEEEEc
Confidence 4777777899999999999999999999974 7999999999987654 23 799999999998 999999999999
Q ss_pred CCCCHHHHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEe-eccCCchhhhh
Q 035812 130 AGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILN-RESMGEDLFWA 208 (520)
Q Consensus 130 aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a 208 (520)
||+++.+|.+.|.++|+.++.. |.+..++|||.+.+|+||. +..||..+|+|++++||++||++++ ++.+|+|||||
T Consensus 77 aG~~l~~l~~~L~~~G~~l~~~-~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a 154 (419)
T TIGR01679 77 AGTRLGALGPQLAQRGLGLENQ-GDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLA 154 (419)
T ss_pred CCCCHHHHHHHHHHcCCccccC-CCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHH
Confidence 9999999999999998543322 4556678999999999997 5689999999999999999999997 66678999999
Q ss_pred hhccCCCCeEEEEEEEEEEEecCceE
Q 035812 209 IRGGGGESFGVILAWKIKLVSVPEKV 234 (520)
Q Consensus 209 ~rG~g~g~fGivt~~~~~~~p~~~~~ 234 (520)
+|||+ |+|||||++|||++|.++..
T Consensus 155 ~~g~~-G~lGVIt~vtl~~~p~~~~~ 179 (419)
T TIGR01679 155 ARVSL-GALGVISQVTLQTVALFRLR 179 (419)
T ss_pred HHhCC-CceEEEEEEEEEeecceEeE
Confidence 99998 89999999999999987643
No 8
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.97 E-value=2.3e-30 Score=276.76 Aligned_cols=181 Identities=18% Similarity=0.231 Sum_probs=158.9
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEe-CccCCCCCcccCC-CCeEEEEeecccc-EEEeCCCCEEE
Q 035812 51 RFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRS-GGHDYEGLSYTST-VPFVVLDMFNLRK-IDINIADETAW 127 (520)
Q Consensus 51 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~g-gGh~~~g~~~~~~-~~gvvIdl~~~~~-i~~d~~~~~v~ 127 (520)
.|+.+....|.+|++|+|++||+++|++|+++++||+++| +||++.+.+.... +++++|||++||+ +++|.++++|+
T Consensus 23 nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVt 102 (557)
T TIGR01677 23 AFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVT 102 (557)
T ss_pred hcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEE
Confidence 5888888999999999999999999999999999999996 6999877554321 1369999999999 59999999999
Q ss_pred EcCCCCHHHHHHHHHhcCCcceecC-CCCCCccchhhhhcCCCCCCc-cccCccccceeEEEEEeecc------cEEe-e
Q 035812 128 VQAGATIGELYYQISNVSKLHAFPA-GVCPTIGAGGHITGGGYGNLM-RKYGLSSDNVVDAQLVDVEG------RILN-R 198 (520)
Q Consensus 128 v~aG~~~~~l~~~l~~~g~~~~~~~-g~~~~vgigG~~~ggg~g~~~-~~~G~~~d~v~~~~vV~~~G------~~~~-~ 198 (520)
|+||+++.+|.+.|.++| ++++. +.+..++|||.+.+|+||... +.||..+|+|++++||+++| ++++ +
T Consensus 103 V~AG~~l~~L~~~L~~~G--lal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s 180 (557)
T TIGR01677 103 VESGMSLRELIVEAEKAG--LALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILS 180 (557)
T ss_pred ECCCCcHHHHHHHHHHcC--CEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeC
Confidence 999999999999999987 45554 345678999999999999765 58899999999999999998 7776 6
Q ss_pred ccCCchhhhhhhccCCCCeEEEEEEEEEEEecCceE
Q 035812 199 ESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKV 234 (520)
Q Consensus 199 ~~~~~dl~~a~rG~g~g~fGivt~~~~~~~p~~~~~ 234 (520)
..+++|||||+|||+ |+|||||++|||++|.+...
T Consensus 181 ~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~~ 215 (557)
T TIGR01677 181 EGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKRS 215 (557)
T ss_pred CCCCHHHHHhhccCC-CccEeeeEEEEEEEccccce
Confidence 667899999999998 89999999999999987643
No 9
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=4.9e-30 Score=268.97 Aligned_cols=179 Identities=23% Similarity=0.294 Sum_probs=156.8
Q ss_pred EEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCHHHHHHHH
Q 035812 63 IVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-DINIADETAWVQAGATIGELYYQI 141 (520)
Q Consensus 63 vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~~l 141 (520)
||+|+|++||+++|++|+++++|++++|+|||+.|.+...+ ++++|||++||+| ++|+++.+++||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 57899999999999999999999999999999987766543 5899999999998 999999999999999999999999
Q ss_pred HhcCCcceecCCCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEee------ccCCchhhhhhhccCCC
Q 035812 142 SNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILNR------ESMGEDLFWAIRGGGGE 215 (520)
Q Consensus 142 ~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~~------~~~~~dl~~a~rG~g~g 215 (520)
.++|+.+++.+++...++|||++.+++.|..+.+||.+.|+|++++||++||++++. ...++||+|.++|+. |
T Consensus 80 ~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~-G 158 (413)
T TIGR00387 80 EEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSE-G 158 (413)
T ss_pred HHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCC-c
Confidence 999854333345555678999999999999999999999999999999999999961 234679999999998 8
Q ss_pred CeEEEEEEEEEEEecCceEEEEEEeecc
Q 035812 216 SFGVILAWKIKLVSVPEKVTVFNVGKTT 243 (520)
Q Consensus 216 ~fGivt~~~~~~~p~~~~~~~~~~~~~~ 243 (520)
+|||||+++||++|.|+....+.+.|..
T Consensus 159 tlGiit~~~lkl~p~p~~~~~~~~~f~~ 186 (413)
T TIGR00387 159 TLGIVTEATLKLLPKPENIVVALAFFDS 186 (413)
T ss_pred cceEEEEEEEEeecCCCccEEEEEECCC
Confidence 9999999999999999876555555543
No 10
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=1e-29 Score=257.53 Aligned_cols=167 Identities=22% Similarity=0.310 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCcc-CCCCCcccCCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCHHHHHHHHHhcC
Q 035812 68 HRSHVQATIKCSNQAGLELRIRSGGH-DYEGLSYTSTVPFVVLDMFNLRKI-DINIADETAWVQAGATIGELYYQISNVS 145 (520)
Q Consensus 68 ~~~dv~~~v~~a~~~~~~~~~~ggGh-~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~g 145 (520)
.++||+++|++|+++++|++++|||| ++.|... . +++|||++||+| ++|+++.+|+|+||+++.||.++|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~~--~--~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRAL--A--GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCCC--C--CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 47899999999999999999999997 4656532 3 679999999998 9999999999999999999999999998
Q ss_pred CcceecC-CCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEee------ccCCchhhhhhhccCCCCeE
Q 035812 146 KLHAFPA-GVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILNR------ESMGEDLFWAIRGGGGESFG 218 (520)
Q Consensus 146 ~~~~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~~------~~~~~dl~~a~rG~g~g~fG 218 (520)
..+++.+ ..+..++|||++.+|++|..+.+||..+|+|++++||++||++++. +..++||||+++|+. |+||
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-GtLG 157 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GTLG 157 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-chhh
Confidence 6555433 3445689999999999999999999999999999999999999962 234689999999998 8999
Q ss_pred EEEEEEEEEEecCceEEEEEE
Q 035812 219 VILAWKIKLVSVPEKVTVFNV 239 (520)
Q Consensus 219 ivt~~~~~~~p~~~~~~~~~~ 239 (520)
|||++|||++|.|+....+.+
T Consensus 158 Vitevtlkl~P~p~~~~t~~~ 178 (352)
T PRK11282 158 VLLEVSLKVLPRPRAELTLRL 178 (352)
T ss_pred hheEEEEEEEecCceEEEEEE
Confidence 999999999999986544433
No 11
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.96 E-value=1e-28 Score=245.71 Aligned_cols=175 Identities=25% Similarity=0.377 Sum_probs=152.5
Q ss_pred CCCCCccEEEecCCHHHHHHHHHHHHHC--CCeEEEEeCccCCCCCcccCCCCeEEEEee---ccccE-EEeCCCCEEEE
Q 035812 55 PSTPKPLAIVTPNHRSHVQATIKCSNQA--GLELRIRSGGHDYEGLSYTSTVPFVVLDMF---NLRKI-DINIADETAWV 128 (520)
Q Consensus 55 ~~~~~p~~vv~p~~~~dv~~~v~~a~~~--~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~---~~~~i-~~d~~~~~v~v 128 (520)
..+..|.+|+.|+|++||++++|.|+.. ++||++||+|||..|++.... +|+||.|+ .|+++ .+..++..+.|
T Consensus 59 ~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~yvdV 137 (505)
T KOG1231|consen 59 RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLYVDV 137 (505)
T ss_pred cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccceEEe
Confidence 3456999999999999999999999999 999999999999999988743 58777664 45666 55666789999
Q ss_pred cCCCCHHHHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEe-eccCCchhhh
Q 035812 129 QAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILN-RESMGEDLFW 207 (520)
Q Consensus 129 ~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~ 207 (520)
.||..|-+|.+++.++|..-..+...-+ .+|||.++.+|+|-++.+||...+||++++|||++|++++ ++..|++||.
T Consensus 138 ~~g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~ 216 (505)
T KOG1231|consen 138 SAGTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFF 216 (505)
T ss_pred eCChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeee
Confidence 9999999999999998841122333333 7899999999999999999999999999999999999997 6778999999
Q ss_pred hhhccCCCCeEEEEEEEEEEEecCc
Q 035812 208 AIRGGGGESFGVILAWKIKLVSVPE 232 (520)
Q Consensus 208 a~rG~g~g~fGivt~~~~~~~p~~~ 232 (520)
++-||. |+|||||+++++|+|+|+
T Consensus 217 ~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 217 LVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeccC-cceeeEEEEEEEeccCCc
Confidence 999998 899999999999999994
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=3e-28 Score=258.90 Aligned_cols=177 Identities=17% Similarity=0.245 Sum_probs=159.1
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccE-EEeCCCCEEEEc
Q 035812 51 RFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-DINIADETAWVQ 129 (520)
Q Consensus 51 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~ 129 (520)
+|+.+....|.+++.|+|++||+++|++|++++++|+++|+|||+.+..... +.+|||++|++| ++|.++++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td---~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR---EGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC---CEEEECcCCCCcEEEeCCCCEEEEc
Confidence 6999999999999999999999999999999999999999999998876644 346899999997 999999999999
Q ss_pred CCCCHHHHHHHHHhcCCcceecC-CCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEe-eccCCchhhh
Q 035812 130 AGATIGELYYQISNVSKLHAFPA-GVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILN-RESMGEDLFW 207 (520)
Q Consensus 130 aG~~~~~l~~~l~~~g~~~~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~ 207 (520)
||+++.+|.+.|.++| ++++. |.+...+|||.+.+|+||.. ..+|..+|+|++++||+++|++++ +..+++||||
T Consensus 165 AG~~l~~L~~~L~~~G--Lal~n~g~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 241 (573)
T PLN02465 165 AGARVQQVVEALRPHG--LTLQNYASIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFR 241 (573)
T ss_pred cCCCHHHHHHHHHHcC--CEeccCCCCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCCCCHHHHh
Confidence 9999999999999987 44554 56667889999999999975 468999999999999999999997 5666899999
Q ss_pred hhhccCCCCeEEEEEEEEEEEecCceE
Q 035812 208 AIRGGGGESFGVILAWKIKLVSVPEKV 234 (520)
Q Consensus 208 a~rG~g~g~fGivt~~~~~~~p~~~~~ 234 (520)
+.|++. |.|||||++|||+.|.++..
T Consensus 242 aar~gl-G~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 242 LARCGL-GGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred HhhccC-CCCcEEEEEEEEEEecCceE
Confidence 999998 89999999999999998743
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.95 E-value=4.2e-27 Score=210.05 Aligned_cols=136 Identities=35% Similarity=0.570 Sum_probs=124.2
Q ss_pred ccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeecccc-EEEeCCCCEEEEcCCCCHHHHH
Q 035812 60 PLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRK-IDINIADETAWVQAGATIGELY 138 (520)
Q Consensus 60 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~-i~~d~~~~~v~v~aG~~~~~l~ 138 (520)
|.+|++|++++||+++|++|+++++|++++|+||++.+.+... ++++|||++|++ +++|++.++++|+||++|.||+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 8899999999999999999999999999999999999776633 499999999999 5999999999999999999999
Q ss_pred HHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEe
Q 035812 139 YQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILN 197 (520)
Q Consensus 139 ~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~ 197 (520)
++|.++|..+.+.++.+..++|||++.+|++|..++.||..+|+|+++++|++||++++
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 99989874333347888889999999999999999999999999999999999999986
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=5.6e-25 Score=220.38 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=142.0
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeec-cccEEEeCCCCEEEEcCCCCHH
Q 035812 57 TPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFN-LRKIDINIADETAWVQAGATIG 135 (520)
Q Consensus 57 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~-~~~i~~d~~~~~v~v~aG~~~~ 135 (520)
...|.+++.|+|++||+++|++|+++++|+.++|+|||+...+.+.+ +++|+|++ |+.|++ ++.+++|+||++|.
T Consensus 28 gg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~~--gvvI~l~~~l~~i~~--~~~~v~v~aG~~~~ 103 (298)
T PRK13905 28 GGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGIR--GVVIRLGKGLNEIEV--EGNRITAGAGAPLI 103 (298)
T ss_pred CceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCcc--eEEEEecCCcceEEe--cCCEEEEECCCcHH
Confidence 45799999999999999999999999999999999999876544333 89999998 998855 45689999999999
Q ss_pred HHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccC-ccccceeEEEEEeecccEEeeccCCchhhhhhhccCC
Q 035812 136 ELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYG-LSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGG 214 (520)
Q Consensus 136 ~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g~ 214 (520)
+|.++|.++|+ .|.+..+||+| ++||+++++++.|| .++|+|+++++|++||++++.. +.|++|++|++..
T Consensus 104 ~L~~~l~~~Gl-----~gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s~~ 175 (298)
T PRK13905 104 KLARFAAEAGL-----SGLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHSAL 175 (298)
T ss_pred HHHHHHHHcCC-----CcchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCccccC
Confidence 99999999873 47777888888 78899999999998 7999999999999999999733 3699999999874
Q ss_pred C-CeEEEEEEEEEEEecC
Q 035812 215 E-SFGVILAWKIKLVSVP 231 (520)
Q Consensus 215 g-~fGivt~~~~~~~p~~ 231 (520)
+ .+||||+++||++|..
T Consensus 176 ~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 176 QEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCCCEEEEEEEEEEcCCC
Confidence 4 4899999999999874
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.90 E-value=6.3e-23 Score=213.34 Aligned_cols=183 Identities=17% Similarity=0.232 Sum_probs=152.8
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCC----CeEEEEeeccccE-EEeCCCCEEEEcCC
Q 035812 57 TPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTV----PFVVLDMFNLRKI-DINIADETAWVQAG 131 (520)
Q Consensus 57 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~----~gvvIdl~~~~~i-~~d~~~~~v~v~aG 131 (520)
...|.+||+|.|++||+++|++|+++++||++||||+++.|.+.+... ++|||||++||+| +|| ++..++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999998886532 3799999999999 788 5678999999
Q ss_pred CCHHHHHHHHHhcCCcceecCC-CCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccE-------Ee--e---
Q 035812 132 ATIGELYYQISNVSKLHAFPAG-VCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRI-------LN--R--- 198 (520)
Q Consensus 132 ~~~~~l~~~l~~~g~~~~~~~g-~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~-------~~--~--- 198 (520)
+++.+|.++|.++|+......| +|-.++|||.+..+.-|....+||...++++. ++|+++|++ +. .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 9999999999999853222123 33345688999999999999999999999999 999999999 32 1
Q ss_pred ------ccCCc----------------------------------hhhhhh--hccCCCCeEEEEEEEEEEEecCceEEE
Q 035812 199 ------ESMGE----------------------------------DLFWAI--RGGGGESFGVILAWKIKLVSVPEKVTV 236 (520)
Q Consensus 199 ------~~~~~----------------------------------dl~~a~--rG~g~g~fGivt~~~~~~~p~~~~~~~ 236 (520)
+..+. |+...+ .|+. |++||| +++++++|.|+...+
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcceE
Confidence 11123 777777 7887 899999 999999999998888
Q ss_pred EEEeecc
Q 035812 237 FNVGKTT 243 (520)
Q Consensus 237 ~~~~~~~ 243 (520)
|.+.++.
T Consensus 272 f~ig~n~ 278 (564)
T PRK11183 272 FYIGTND 278 (564)
T ss_pred EEEeCCC
Confidence 8887765
No 16
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=6.5e-22 Score=197.50 Aligned_cols=163 Identities=20% Similarity=0.154 Sum_probs=137.0
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeec-cccEEEeCCCCEEEEcCCCCH
Q 035812 56 STPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFN-LRKIDINIADETAWVQAGATI 134 (520)
Q Consensus 56 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~-~~~i~~d~~~~~v~v~aG~~~ 134 (520)
....|.+++.|+|++||++++++|+++++|+.++|||||....+.+.+ +++|++++ ++.++++ +.+++|+||+.|
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~~--gvVI~l~~~~~~i~~~--~~~v~v~AG~~~ 107 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGVR--GVVLRLPQDFPGESTD--GGRLVLGAGAPI 107 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCEe--eEEEEecCCcceEEec--CCEEEEECCCcH
Confidence 345899999999999999999999999999999999999875443333 89999976 5556543 469999999999
Q ss_pred HHHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCcc-ccCccccceeEEEEEeecccEEeeccCCchhhhhhhccC
Q 035812 135 GELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMR-KYGLSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGG 213 (520)
Q Consensus 135 ~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~-~~G~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g 213 (520)
.+|.+++.++| ..|.++.+||+| ++||++.++++ ++|.++|+|+++++|+++| ++... ..|+.|+||++.
T Consensus 108 ~~L~~~~~~~G-----L~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~s~ 178 (302)
T PRK14652 108 SRLPARAHAHG-----LVGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRTCR 178 (302)
T ss_pred HHHHHHHHHcC-----CcccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccceec
Confidence 99999999987 348999999999 88999999986 6678999999999999999 44322 379999999875
Q ss_pred CCCeEEEEEEEEEEEecC
Q 035812 214 GESFGVILAWKIKLVSVP 231 (520)
Q Consensus 214 ~g~fGivt~~~~~~~p~~ 231 (520)
-+..||||+++||++|..
T Consensus 179 ~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 179 LPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cCCCeEEEEEEEEEecCC
Confidence 333489999999999854
No 17
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.87 E-value=7.3e-22 Score=196.01 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=141.9
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccEEEeCCCCEEEEcCCCCHH
Q 035812 56 STPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIG 135 (520)
Q Consensus 56 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~~~ 135 (520)
....|.+++.|+|++||++++++|+++++|+.++|+|||+.+.+.+.+ +++|++++|+.+.+++ +.+++|+||+.|.
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~~--gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~ 85 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGRG--GVIINLGKGIDIEDDE-GEYVHVGGGENWH 85 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCcC--eEEEECCCCceEEEec-CCEEEEEcCCcHH
Confidence 345789999999999999999999999999999999999987776554 8999999999887766 5799999999999
Q ss_pred HHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCcccc-ceeEEEEEeecccEEeeccCCchhhhhhhccCC
Q 035812 136 ELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSD-NVVDAQLVDVEGRILNRESMGEDLFWAIRGGGG 214 (520)
Q Consensus 136 ~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d-~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g~ 214 (520)
+|.+++.++| ..|.+..+||+| ++||+++++++.||..++ .|+++++|+++|++++.. +.|+.|+||.+..
T Consensus 86 ~l~~~~~~~G-----l~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~--~~~~~f~YR~S~f 157 (284)
T TIGR00179 86 KLVKYALKNG-----LSGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLT--NEQLGFGYRTSIF 157 (284)
T ss_pred HHHHHHHHCC-----CcccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEE--HHHccccCCcccc
Confidence 9999999987 359999999999 799999999999999876 689999999999998733 3699999997652
Q ss_pred CC-e-EEEEEEEEEEEe
Q 035812 215 ES-F-GVILAWKIKLVS 229 (520)
Q Consensus 215 g~-f-Givt~~~~~~~p 229 (520)
-. . .||++++|++.+
T Consensus 158 ~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 158 QHKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCCCcEEEEEEEEEecc
Confidence 21 2 699999999843
No 18
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=9.1e-22 Score=196.93 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=136.9
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccEEEeCCCCEEEEcCCCCHH
Q 035812 56 STPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIG 135 (520)
Q Consensus 56 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~~~ 135 (520)
....|.+++.|+|++||++++++|+++++|+.++|+|||+...+.+.+ |++|+|++|++|+++ +.+++|+||+.|.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~~--GvvI~l~~l~~i~~~--~~~v~v~aG~~~~ 108 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGIR--GITVSLIHITGVTVT--GTTIVAQCGAAII 108 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCee--EEEEEeCCcCcEEEe--CCEEEEEeCCcHH
Confidence 345799999999999999999999999999999999999885444343 899999889999876 4589999999999
Q ss_pred HHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccC-ccccceeEEEEEeecccEEeeccCCchhhhhhhccCC
Q 035812 136 ELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYG-LSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGG 214 (520)
Q Consensus 136 ~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g~ 214 (520)
+|.+++.++|+ .|.+..+|++| +.||+..++++.|| ...|.+.+++|+++||++++.. +.||.|+||.+..
T Consensus 109 ~L~~~~~~~gl-----~Gle~~~giPG-tVGGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~--~~e~~f~YR~s~~ 180 (305)
T PRK12436 109 DVSRIALDHNL-----TGLEFACGIPG-SVGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLT--KEAFEFGYRKSVF 180 (305)
T ss_pred HHHHHHHHcCC-----ccchhhcCCcc-chhHHHHhcCccchhehheeeeEEEEEeCCCCEEEEE--HHHhcCcCCCCcC
Confidence 99999999873 36666667777 56788888888898 5678888999999999999733 3689999998743
Q ss_pred C-CeEEEEEEEEEEEec
Q 035812 215 E-SFGVILAWKIKLVSV 230 (520)
Q Consensus 215 g-~fGivt~~~~~~~p~ 230 (520)
. +..||++++||+.+.
T Consensus 181 ~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 181 ANNHYIILEARFELEEG 197 (305)
T ss_pred CCCCEEEEEEEEEEcCC
Confidence 2 357999999999875
No 19
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=2.3e-21 Score=194.07 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=139.6
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccEEEeCCCCEEEEcCCCCHHHH
Q 035812 58 PKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGEL 137 (520)
Q Consensus 58 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~~~~l 137 (520)
..+.+++.|++++||++++++|+++++|+.++|+|||....+.+.+ |++|++++|++|+++. .+++||||+.|.+|
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~~--GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~l 110 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGIR--GIVISLLSLDHIEVSD--DAIIAGSGAAIIDV 110 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCcc--eEEEEecCccceEEeC--CEEEEECCCcHHHH
Confidence 4688999999999999999999999999999999999876554444 8999998899998763 58999999999999
Q ss_pred HHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccC-ccccceeEEEEEeecccEEeeccCCchhhhhhhccCCCC
Q 035812 138 YYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYG-LSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGES 216 (520)
Q Consensus 138 ~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g~g~ 216 (520)
.+++.++| ..|.+..+||+| ++||++.++++.|| .++|+|+++++|+++|++++.. ..|+.|+||.+..-.
T Consensus 111 ~~~~~~~G-----l~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~--~~e~~f~YR~S~~~~ 182 (307)
T PRK13906 111 SRVARDYA-----LTGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLT--TKELELDYRNSIIQK 182 (307)
T ss_pred HHHHHHcC-----CccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEE--HHHccCcCCcccCCC
Confidence 99999987 358888889999 89999999999995 8899999999999999999733 368999999765322
Q ss_pred -eEEEEEEEEEEEec
Q 035812 217 -FGVILAWKIKLVSV 230 (520)
Q Consensus 217 -fGivt~~~~~~~p~ 230 (520)
--||++++|++.|.
T Consensus 183 ~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 183 EHLVVLEAAFTLAPG 197 (307)
T ss_pred CCEEEEEEEEEECCC
Confidence 24999999999863
No 20
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.86 E-value=6.8e-21 Score=190.18 Aligned_cols=176 Identities=20% Similarity=0.297 Sum_probs=152.9
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCHHH
Q 035812 58 PKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-DINIADETAWVQAGATIGE 136 (520)
Q Consensus 58 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~ 136 (520)
.+.+-|-+|+|++||.++|+.|+++|.++++.|.|||..+..+.+ |.+|+|.+||+| ++|++..++||++|+++.|
T Consensus 48 c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~aGirlrQ 124 (518)
T KOG4730|consen 48 CKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQAGIRLRQ 124 (518)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEeccCcCHHH
Confidence 345567789999999999999999999999999999999877654 688999999998 9999999999999999999
Q ss_pred HHHHHHhcCCcceec-CCCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEe-eccCCchhhhhhhccCC
Q 035812 137 LYYQISNVSKLHAFP-AGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILN-RESMGEDLFWAIRGGGG 214 (520)
Q Consensus 137 l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a~rG~g~ 214 (520)
|.+++++.| ++++ .+....+.|||++..|.||.....|+.....++...++.++|.++. +++.+||+|.|.+-+-
T Consensus 125 Lie~~~~~G--lsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAkvSL- 201 (518)
T KOG4730|consen 125 LIEELAKLG--LSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAAKVSL- 201 (518)
T ss_pred HHHHHHhcC--ccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhhhhcc-
Confidence 999999987 5555 3677778899999999999877767777777777777788998776 7777899999999998
Q ss_pred CCeEEEEEEEEEEEecCceEEEEEE
Q 035812 215 ESFGVILAWKIKLVSVPEKVTVFNV 239 (520)
Q Consensus 215 g~fGivt~~~~~~~p~~~~~~~~~~ 239 (520)
|-+|||.++||++.|.-+....+.+
T Consensus 202 G~LGVIs~VTl~~vp~Fk~s~t~~v 226 (518)
T KOG4730|consen 202 GVLGVISQVTLSVVPAFKRSLTYVV 226 (518)
T ss_pred cceeEEEEEEEEEEecceeeeEEEE
Confidence 8999999999999999876655444
No 21
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=7.7e-21 Score=192.99 Aligned_cols=165 Identities=18% Similarity=0.176 Sum_probs=139.9
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccEEEeCCCCEEEEcCCCCHH
Q 035812 56 STPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIG 135 (520)
Q Consensus 56 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~~~ 135 (520)
....+.+++.|+|++||++++++|+++++|+.|+|+|||+...+.+.+ |+||+++ ++.++++.+..+++|+||+.|.
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g~~--GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~ 105 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDGFD--GTVVRVA-TRGVTVDCGGGLVRAEAGAVWD 105 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCCcc--EEEEEeC-CCcEEEeCCCCEEEEEcCCCHH
Confidence 345789999999999999999999999999999999999886555444 8999997 5888887666799999999999
Q ss_pred HHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCc-cccceeEEEEEeec-ccEEeeccCCchhhhhhhccC
Q 035812 136 ELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGL-SSDNVVDAQLVDVE-GRILNRESMGEDLFWAIRGGG 213 (520)
Q Consensus 136 ~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~-G~~~~~~~~~~dl~~a~rG~g 213 (520)
+|.+++.++| ..|.+..+||+| +.||+.-++.+.||. +.|.|.++++++.+ |++++.. +.||+|+||++.
T Consensus 106 ~l~~~a~~~G-----L~GlE~laGIPG-TVGGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~ 177 (363)
T PRK13903 106 DVVARTVEAG-----LGGLECLSGIPG-SAGATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSV 177 (363)
T ss_pred HHHHHHHHcC-----CccccccCCCCc-chhhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceeccccc
Confidence 9999999998 567788888888 457777777888876 58999999999965 9999733 479999999863
Q ss_pred C--CCeEEEEEEEEEEEecC
Q 035812 214 G--ESFGVILAWKIKLVSVP 231 (520)
Q Consensus 214 ~--g~fGivt~~~~~~~p~~ 231 (520)
. ++++|||+++||++|..
T Consensus 178 f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 178 LKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred cCCCCCEEEEEEEEEEEcCC
Confidence 1 35899999999999863
No 22
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.85 E-value=4.5e-21 Score=186.87 Aligned_cols=187 Identities=19% Similarity=0.267 Sum_probs=168.0
Q ss_pred cCcccCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccE-EEeCCCCEE
Q 035812 48 KNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-DINIADETA 126 (520)
Q Consensus 48 ~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v 126 (520)
+|..|....+..-..|++|+++++|++++++|+++++.|++.||-+...|.|.+.- .-|||+|.+||+| ++|+-.+++
T Consensus 78 ~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGil 156 (511)
T KOG1232|consen 78 FNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGIL 156 (511)
T ss_pred hhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccceE
Confidence 56678777777889999999999999999999999999999999999988887654 3799999999999 899999999
Q ss_pred EEcCCCCHHHHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEe------ecc
Q 035812 127 WVQAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILN------RES 200 (520)
Q Consensus 127 ~v~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~------~~~ 200 (520)
++.+|+.+.++..+|+++|+.+++..|.-.++-|||.+...+-|..--+||...-+|+++|+|+|+|+++. .+.
T Consensus 157 ~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDN 236 (511)
T KOG1232|consen 157 KCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDN 236 (511)
T ss_pred EeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccC
Confidence 99999999999999999987666667888888899999999999999999999999999999999999995 344
Q ss_pred CCchhhhhhhccCCCCeEEEEEEEEEEEecCceEEE
Q 035812 201 MGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVTV 236 (520)
Q Consensus 201 ~~~dl~~a~rG~g~g~fGivt~~~~~~~p~~~~~~~ 236 (520)
.+.|+-..+.|+. |++||||++++-+.|.|+.+..
T Consensus 237 TgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 237 TGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred ccccchhheecCC-ceeeEEeeEEEeecCCCcceeE
Confidence 5789999999998 8999999999999999886543
No 23
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.84 E-value=1.7e-20 Score=183.14 Aligned_cols=189 Identities=21% Similarity=0.207 Sum_probs=160.1
Q ss_pred CCCCCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCC-C--CeEEEEeeccccE-EEeCCCCEEEE
Q 035812 53 LTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTST-V--PFVVLDMFNLRKI-DINIADETAWV 128 (520)
Q Consensus 53 ~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~-~--~gvvIdl~~~~~i-~~d~~~~~v~v 128 (520)
....+..|..||-|++.+||.++|+.|.++++-+.+.|||+|..+.-.++. . ..+.+|++.||+| -+|.++.++++
T Consensus 154 egkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~ 233 (613)
T KOG1233|consen 154 EGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRA 233 (613)
T ss_pred cCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEE
Confidence 555677999999999999999999999999999999999999775433332 2 2455788999999 88999999999
Q ss_pred cCCCCHHHHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCccccceeEEEEEeecccEEe-----eccCCc
Q 035812 129 QAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILN-----RESMGE 203 (520)
Q Consensus 129 ~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~-----~~~~~~ 203 (520)
++|+.-.+|.+.|.+.|....-.+.+..-.++||++...+.||.-..||.+-|.|+-+++|++.|.+.. .-+.+|
T Consensus 234 eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~GP 313 (613)
T KOG1233|consen 234 EAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSGP 313 (613)
T ss_pred ecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCCC
Confidence 999999999999999885322233444457899999999999999999999999999999999999874 334589
Q ss_pred hhhhhhhccCCCCeEEEEEEEEEEEecCceEEEEEEeec
Q 035812 204 DLFWAIRGGGGESFGVILAWKIKLVSVPEKVTVFNVGKT 242 (520)
Q Consensus 204 dl~~a~rG~g~g~fGivt~~~~~~~p~~~~~~~~~~~~~ 242 (520)
|+-..+-|+. |++||||++|+|++|+|+......+.|+
T Consensus 314 Dihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFP 351 (613)
T KOG1233|consen 314 DIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFP 351 (613)
T ss_pred CcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccC
Confidence 9999999998 8999999999999999987655555554
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.82 E-value=3.2e-19 Score=177.74 Aligned_cols=164 Identities=20% Similarity=0.151 Sum_probs=135.8
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccc-cEEEeCCCCEEEEcCCCCHH
Q 035812 57 TPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLR-KIDINIADETAWVQAGATIG 135 (520)
Q Consensus 57 ~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~-~i~~d~~~~~v~v~aG~~~~ 135 (520)
.....+++.|++++||++++++|+++++|+.++|+|||+...+.+.+ |+||++++|+ ++..+.+..+++|+||+.|.
T Consensus 18 Gg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~--GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~~ 95 (295)
T PRK14649 18 GGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD--GLVARYRGQRWELHEHGDTAEVWVEAGAPMA 95 (295)
T ss_pred CceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC--eEEEEecCCCcEEEEeCCcEEEEEEcCCcHH
Confidence 34677899999999999999999999999999999999998887665 9999998754 66666555589999999999
Q ss_pred HHHHHHHhcCCcceecCCCCCCccchhhhhcC-CCCCCccccCccccceeEEEEEeecccEEeeccCCchhhhhhhccCC
Q 035812 136 ELYYQISNVSKLHAFPAGVCPTIGAGGHITGG-GYGNLMRKYGLSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGG 214 (520)
Q Consensus 136 ~l~~~l~~~g~~~~~~~g~~~~vgigG~~~gg-g~g~~~~~~G~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g~ 214 (520)
+|..++.++| ..|.++.+||+| ++|| .++..+...+.++|.|.++++++.+|++++.. ..||+|+||-+..
T Consensus 96 ~l~~~~~~~G-----L~GlE~l~GIPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~--~~el~f~YR~S~~ 167 (295)
T PRK14649 96 GTARRLAAQG-----WAGLEWAEGLPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWS--VHDFAYGYRTSVL 167 (295)
T ss_pred HHHHHHHHcC-----CccccccCCCCc-chhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEe--HHHcCcccceeec
Confidence 9999999987 577889999999 6666 55555555567899999999999999998733 3599999997642
Q ss_pred CC---------eEEEEEEEEEEEec
Q 035812 215 ES---------FGVILAWKIKLVSV 230 (520)
Q Consensus 215 g~---------fGivt~~~~~~~p~ 230 (520)
-. --||++++|++.|.
T Consensus 168 ~~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 168 KQLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred ccccccccccCCeEEEEEEEEECCC
Confidence 21 12889999888765
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.74 E-value=1.4e-17 Score=165.29 Aligned_cols=159 Identities=19% Similarity=0.260 Sum_probs=138.3
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccEEEeCCCCEEEEcCCCCHHHH
Q 035812 58 PKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGEL 137 (520)
Q Consensus 58 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~~~~l 137 (520)
....+++.|++.+|+++++++|++ ++|+.++|+|+|....+.+.+ |+||.+++|+.++++. ..++|+||+.|.+|
T Consensus 32 G~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~--gvVI~l~~~~~i~i~~--~~v~v~AG~~l~~L 106 (297)
T PRK14653 32 GPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD--FVVVSTERLDDIFVDN--DKIICESGLSLKKL 106 (297)
T ss_pred cEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc--EEEEEeCCcCceEEeC--CEEEEeCCCcHHHH
Confidence 356689999999999999999999 999999999999998877665 8999997899998863 58999999999999
Q ss_pred HHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCc-cccceeEEEEEeecccEEeeccCCchhhhhhhccCCC-
Q 035812 138 YYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGL-SSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGE- 215 (520)
Q Consensus 138 ~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g~g- 215 (520)
..++.++| ..|.+..+||+| +.||+.-++++.||. +.|.|.++++++ +|++++.. ..|+-|.||.+.-.
T Consensus 107 ~~~~~~~G-----L~GlE~l~gIPG-TVGGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~--~~e~~f~YR~S~~~~ 177 (297)
T PRK14653 107 CLVAAKNG-----LSGFENAYGIPG-SVGGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLG--KNEIKFSYRNSIFKE 177 (297)
T ss_pred HHHHHHCC-----CcchhhhcCCch-hHHHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEc--hhhccccCccccCCC
Confidence 99999998 578889999999 589999999999998 899999999999 78877633 35999999976422
Q ss_pred --CeEEEEEEEEEEEecC
Q 035812 216 --SFGVILAWKIKLVSVP 231 (520)
Q Consensus 216 --~fGivt~~~~~~~p~~ 231 (520)
.+ |||+++||+.|..
T Consensus 178 ~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 178 EKDL-IILRVTFKLKKGN 194 (297)
T ss_pred CCcE-EEEEEEEEEecCC
Confidence 23 9999999998754
No 26
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.68 E-value=2.5e-16 Score=155.86 Aligned_cols=162 Identities=16% Similarity=0.147 Sum_probs=138.5
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCccc-CCCCeEEEEeeccccEEEeCCCCEEEEcCCCCHHH
Q 035812 58 PKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYT-STVPFVVLDMFNLRKIDINIADETAWVQAGATIGE 136 (520)
Q Consensus 58 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~-~~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~~~~ 136 (520)
....+++.|+|.+|+++++++++++++|+.+.|+|+|....+.+ .+ ++||.+.+|+.++++. ..++|+||+.|.+
T Consensus 31 G~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~--g~vi~~~~~~~i~~~~--~~v~a~AG~~~~~ 106 (302)
T PRK14650 31 GISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEID--FPIIYTGHLNKIEIHD--NQIVAECGTNFED 106 (302)
T ss_pred cEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccc--eEEEEECCcCcEEEeC--CEEEEEeCCcHHH
Confidence 35668899999999999999999999999999999998877765 54 8889886799998763 4799999999999
Q ss_pred HHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCc-cccceeEEEEEeecccEEeeccCCchhhhhhhccCCC
Q 035812 137 LYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGL-SSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGE 215 (520)
Q Consensus 137 l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g~g 215 (520)
|..++.++| ..|.+..+||+| +.||+.-++.+.||. +.|.|.++++++.+|++++.. ..|+-|+||-+..-
T Consensus 107 l~~~~~~~g-----l~GlE~l~gIPG-TVGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~S~f~ 178 (302)
T PRK14650 107 LCKFALQNE-----LSGLEFIYGLPG-TLGGAIWMNARCFGNEISEILDKITFIDEKGKTICKK--FKKEEFKYKISPFQ 178 (302)
T ss_pred HHHHHHHcC-----CchhhhhcCCCc-chhHHHHhhCCccccchheeEEEEEEEECCCCEEEEE--HHHcCcccccccCC
Confidence 999999998 678999999999 778888889999985 589999999999999998633 36999999976522
Q ss_pred C-eEEEEEEEEEEEecC
Q 035812 216 S-FGVILAWKIKLVSVP 231 (520)
Q Consensus 216 ~-fGivt~~~~~~~p~~ 231 (520)
. =.||++++|++.|..
T Consensus 179 ~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 179 NKNTFILKATLNLKKGN 195 (302)
T ss_pred CCCEEEEEEEEEEcCCC
Confidence 1 149999999998754
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=4e-16 Score=151.94 Aligned_cols=165 Identities=22% Similarity=0.198 Sum_probs=144.4
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccEEEeCCCCEEEEcCCCCHH
Q 035812 56 STPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIG 135 (520)
Q Consensus 56 ~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~~~ 135 (520)
.......++.|++.+|++++++++.+.++|+.+.|+|+|....+.+.+ +++|.+.+++.++++.+...+++++|+.|.
T Consensus 17 iGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~~--gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~ 94 (291)
T COG0812 17 IGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGIG--GVVIKLGKLNFIEIEGDDGLIEAGAGAPWH 94 (291)
T ss_pred cCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCCc--eEEEEcccccceeeeccCCeEEEccCCcHH
Confidence 445677899999999999999999999999999999999887776655 999999999988887776799999999999
Q ss_pred HHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCc-cccceeEEEEEeecccEEeeccCCchhhhhhhccCC
Q 035812 136 ELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGL-SSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGG 214 (520)
Q Consensus 136 ~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g~ 214 (520)
+|.+++.++| ..|.+..+||+| +.||+.-|+.+.||. +.|.+.++++++.+|++.+-. +.||-|+||-+..
T Consensus 95 ~l~~~~~~~g-----l~GlE~l~gIPG-svGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~--~~el~f~YR~S~f 166 (291)
T COG0812 95 DLVRFALENG-----LSGLEFLAGIPG-SVGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLS--AEELGFGYRTSPF 166 (291)
T ss_pred HHHHHHHHcC-----CcchhhhcCCCc-ccchhhhccCcccccchheeEEEEEEEcCCCCEEEEE--HHHhCcccccCcC
Confidence 9999999987 678999999999 778888899999977 589999999999999999733 3699999997653
Q ss_pred CCe-EEEEEEEEEEEec
Q 035812 215 ESF-GVILAWKIKLVSV 230 (520)
Q Consensus 215 g~f-Givt~~~~~~~p~ 230 (520)
..- .||++++|++.|-
T Consensus 167 ~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 167 KKEYLVVLSVEFKLTKG 183 (291)
T ss_pred CCCCEEEEEEEEEeCCC
Confidence 222 8999999999875
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=3.2e-16 Score=157.48 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=136.6
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccEEEe--CCC-CEEEEcCCCCH
Q 035812 58 PKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDIN--IAD-ETAWVQAGATI 134 (520)
Q Consensus 58 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i~~d--~~~-~~v~v~aG~~~ 134 (520)
....+++.|+|++|+++++++|+++++|+.+.|+|+|....+ +.+ |+||.+ +|+.++++ .++ ..++++||+.|
T Consensus 19 G~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~~--g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~~~ 94 (334)
T PRK00046 19 ARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DFD--GTVLLN-RIKGIEVLSEDDDAWYLHVGAGENW 94 (334)
T ss_pred cEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CCC--EEEEEe-cCCceEEEecCCCeEEEEEEcCCcH
Confidence 356689999999999999999999999999999999988776 454 888988 49998873 222 38999999999
Q ss_pred HHHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCc-cccceeEEEEEeec-ccEEeeccCCchhhhhhhcc
Q 035812 135 GELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGL-SSDNVVDAQLVDVE-GRILNRESMGEDLFWAIRGG 212 (520)
Q Consensus 135 ~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~-G~~~~~~~~~~dl~~a~rG~ 212 (520)
.+|.+++.++| ..|.+..+||+| +.||+.-++.+.||. +.|.|.++++++.+ |++++.. ..|+.|+||-+
T Consensus 95 ~~l~~~~~~~g-----l~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~--~~e~~f~YR~S 166 (334)
T PRK00046 95 HDLVLWTLQQG-----MPGLENLALIPG-TVGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLS--AAECRFGYRDS 166 (334)
T ss_pred HHHHHHHHHcC-----chhhHHhcCCCc-chhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEE--HHHcCcccccc
Confidence 99999999987 678999999999 778888889999985 58999999999987 9988633 37999999976
Q ss_pred CCCC----eEEEEEEEEEEEec
Q 035812 213 GGES----FGVILAWKIKLVSV 230 (520)
Q Consensus 213 g~g~----fGivt~~~~~~~p~ 230 (520)
..-. --||++++|++.|-
T Consensus 167 ~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 167 IFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cCCCCCcCCEEEEEEEEEecCC
Confidence 4322 23999999999885
No 29
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.64 E-value=5.2e-17 Score=115.50 Aligned_cols=47 Identities=45% Similarity=0.721 Sum_probs=34.2
Q ss_pred cccCCCCCccCCCCCCCCCccccccchhhhccccccHHHHHHHHhhcCCCCCCCCCCCCC
Q 035812 455 AFHNYRDLDIGNSYPSNKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSIP 514 (520)
Q Consensus 455 ~Y~Ny~d~~l~~q~~~~~~~~~~~~~~~~~~y~g~n~~RL~~iK~kYDP~nvF~~~qsI~ 514 (520)
+|+||+|.+++. +.|.+.|||+||+||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~~-------------~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLPG-------------DDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGGS-------------SHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccch-------------hHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 699999988541 13999999999999999999999999999999997
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.63 E-value=2.9e-15 Score=150.25 Aligned_cols=166 Identities=18% Similarity=0.193 Sum_probs=135.8
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccEEEe---CCCCEEEEcCCCCH
Q 035812 58 PKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDIN---IADETAWVQAGATI 134 (520)
Q Consensus 58 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i~~d---~~~~~v~v~aG~~~ 134 (520)
..-.+++.|+|.+|+++++++|+++++|+.+.|+|+|....+.+.+ |+||.+.+|+.+++. .+...++|++|+.|
T Consensus 28 G~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~~--G~VI~l~~~~~i~i~~~~~~~~~v~agAG~~~ 105 (354)
T PRK14648 28 GAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGVP--GLMLSLRRFRSLHTQTQRDGSVLVHAGAGLPV 105 (354)
T ss_pred cEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCcc--EEEEEeCCcCceEEeeccCCcEEEEEEeCCcH
Confidence 3566899999999999999999999999999999999888776665 899999779988752 22247999999999
Q ss_pred HHHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCc-cccceeEEEEE--------------------eecc
Q 035812 135 GELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGL-SSDNVVDAQLV--------------------DVEG 193 (520)
Q Consensus 135 ~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV--------------------~~~G 193 (520)
.+|..++.++| ..|.+..+||+| +.||+.-++.+.||. +.|.|.+++++ +.+|
T Consensus 106 ~~Lv~~~~~~g-----l~GlE~laGIPG-TVGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~~g 179 (354)
T PRK14648 106 AALLAFCAHHA-----LRGLETFAGLPG-SVGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDKRG 179 (354)
T ss_pred HHHHHHHHHcC-----CcchhhhcCCCc-chhhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccCCC
Confidence 99999999987 678999999999 778888888999985 58999999999 4567
Q ss_pred cEEe-----------eccCCchhhhhhhccCCCC---------eEEEEEEEEEEEecC
Q 035812 194 RILN-----------RESMGEDLFWAIRGGGGES---------FGVILAWKIKLVSVP 231 (520)
Q Consensus 194 ~~~~-----------~~~~~~dl~~a~rG~g~g~---------fGivt~~~~~~~p~~ 231 (520)
+++. ..-.+.|+.|+||-+..-. --||++++|++.|..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 180 ECLGLDGGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred ceecccccccccccceEecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 7620 0112479999999765321 139999999998753
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.49 E-value=2e-13 Score=133.42 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=122.9
Q ss_pred CccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeec-cccEEEeCCCCEEEEcCCCCHHHH
Q 035812 59 KPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFN-LRKIDINIADETAWVQAGATIGEL 137 (520)
Q Consensus 59 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~-~~~i~~d~~~~~v~v~aG~~~~~l 137 (520)
.-.+++ |++.+|+++++ ++|+.+.|+|+|....+.+.+ ++||.+.+ ++.++++. +|+||+.|.+|
T Consensus 20 ~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~~--g~vI~l~~~~~~~~~~~-----~a~AG~~~~~l 85 (273)
T PRK14651 20 PAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGVP--ERVIRLGGEFAEWDLDG-----WVGGGVPLPGL 85 (273)
T ss_pred eEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCcc--eEEEEECCcceeEeECC-----EEECCCcHHHH
Confidence 334566 99999999988 599999999999888776665 89998865 66665532 69999999999
Q ss_pred HHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCc-cccceeEEEEEeecccEEeeccCCchhhhhhhccCCCC
Q 035812 138 YYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGL-SSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGES 216 (520)
Q Consensus 138 ~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g~g~ 216 (520)
.+++.++| ..|.+..+||+| +.||+.-|+.+.||. +.|.|.++++++ +|++++.. +.|+.|+||.+....
T Consensus 86 ~~~~~~~g-----l~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e~~f~YR~S~~~~ 156 (273)
T PRK14651 86 VRRAARLG-----LSGLEGLVGIPA-QVGGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYS--PDELGFGYRHSGLPP 156 (273)
T ss_pred HHHHHHCC-----CcchhhhcCCCc-chhhHHHhhCCccccChheeEEEEEEEE-CCCEEEEE--HHHccccccccCCCC
Confidence 99999988 578999999999 778888889999985 589999999997 89988733 379999999764322
Q ss_pred eEEEEEEEEEEEec
Q 035812 217 FGVILAWKIKLVSV 230 (520)
Q Consensus 217 fGivt~~~~~~~p~ 230 (520)
=-||++++|++.|.
T Consensus 157 ~~iIl~a~f~l~~~ 170 (273)
T PRK14651 157 GHVVTRVRLKLRPS 170 (273)
T ss_pred CEEEEEEEEEECCC
Confidence 24999999999875
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.49 E-value=2.6e-14 Score=140.46 Aligned_cols=127 Identities=22% Similarity=0.313 Sum_probs=111.2
Q ss_pred EEEEeeccccE-EEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCccccceeE
Q 035812 107 VVLDMFNLRKI-DINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDNVVD 185 (520)
Q Consensus 107 vvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~ 185 (520)
--|++..|.+| ++|.++.+|+|+|+++++|+.++|.+.|+.|++.+- -...++||++.|-|+-..|.+||+..+.+.+
T Consensus 104 ~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~E-ldDlTvGGLinG~Gies~ShkyGlfq~~~~a 182 (543)
T KOG1262|consen 104 HQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPE-LDDLTVGGLINGVGIESSSHKYGLFQHICTA 182 (543)
T ss_pred ccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecc-cccceecceeeecccccccchhhhHHhhhhe
Confidence 33566655555 899999999999999999999999999987776553 3567899999999999999999999999999
Q ss_pred EEEEeecccEEe--eccCCchhhhhhhccCCCCeEEEEEEEEEEEecCceEE
Q 035812 186 AQLVDVEGRILN--RESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPEKVT 235 (520)
Q Consensus 186 ~~vV~~~G~~~~--~~~~~~dl~~a~rG~g~g~fGivt~~~~~~~p~~~~~~ 235 (520)
.|||++||++++ .+++++|||+|+-.+. |++|..+.+|+|+.|..+.+.
T Consensus 183 YEvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfLVaatiriIkvK~Yvk 233 (543)
T KOG1262|consen 183 YEVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFLVAATIRIIKVKKYVK 233 (543)
T ss_pred eEEEecCCeEEEecCCcccCceEEEccccc-CchheeeeeEEEEEeccceEE
Confidence 999999999996 4457899999999998 899999999999999987553
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.20 E-value=6.2e-11 Score=114.85 Aligned_cols=142 Identities=17% Similarity=0.088 Sum_probs=114.6
Q ss_pred CccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccEEEeCCCCEEEEcCCCCHHHHH
Q 035812 59 KPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGELY 138 (520)
Q Consensus 59 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~~~~l~ 138 (520)
...+++.|++.+ + ++|+.+.|+|+|....+.+.. +++ -+++|+.++++. ..++|+||+.|.+|.
T Consensus 18 ~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~~--~vv-~~~~~~~~~~~~--~~v~~~AG~~l~~l~ 81 (257)
T PRK13904 18 PLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPKN--LAI-LGKNFDYIKIDG--ECLEIGGATKSGKIF 81 (257)
T ss_pred eEEEEEEechhh-h----------CCCeEEEeceeEEEEecCCcc--EEE-EccCcCeEEEeC--CEEEEEcCCcHHHHH
Confidence 455677788877 5 899999999999887666543 454 345688888754 479999999999999
Q ss_pred HHHHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCc-cccceeEEEEEeecccEEeeccCCchhhhhhhccCCCCe
Q 035812 139 YQISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGL-SSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGESF 217 (520)
Q Consensus 139 ~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g~g~f 217 (520)
+++.++| ..|.+..+||+| +.||+.-++.+.||. +.|.|.++++++ |+ + ...|+.|+||-+.. .
T Consensus 82 ~~~~~~g-----l~GlE~l~gIPG-tVGGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~-~- 146 (257)
T PRK13904 82 NYAKKNN-----LGGFEFLGKLPG-TLGGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSGI-N- 146 (257)
T ss_pred HHHHHCC-----CchhhhhcCCCc-cHHHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcCC-C-
Confidence 9999988 678999999999 778888888999985 589999999998 42 2 24799999997652 2
Q ss_pred EEEEEEEEEEEecC
Q 035812 218 GVILAWKIKLVSVP 231 (520)
Q Consensus 218 Givt~~~~~~~p~~ 231 (520)
.||++++||+.|..
T Consensus 147 ~iIl~a~f~l~~~~ 160 (257)
T PRK13904 147 GVILEARFKKTHGF 160 (257)
T ss_pred cEEEEEEEEECCCC
Confidence 49999999998854
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=94.90 E-value=0.034 Score=51.18 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=50.8
Q ss_pred ccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCc-ccCCCCeEEEEeecc---ccEEEeCCCCEEEEcCCCCHH
Q 035812 60 PLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLS-YTSTVPFVVLDMFNL---RKIDINIADETAWVQAGATIG 135 (520)
Q Consensus 60 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~-~~~~~~gvvIdl~~~---~~i~~d~~~~~v~v~aG~~~~ 135 (520)
+..+++|+|.+|+.++++ .+-...+.+||++....- ........+||++++ +.|+.+ ++.+++||++++.
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~--~~~l~IGA~vtl~ 75 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISED--DGGLRIGAAVTLS 75 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEE--TSEEEEETTSBHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEe--ccEEEECCCccHH
Confidence 345789999999999988 233678999999853211 111112588999875 455554 6799999999999
Q ss_pred HHHHH
Q 035812 136 ELYYQ 140 (520)
Q Consensus 136 ~l~~~ 140 (520)
++.+.
T Consensus 76 ~l~~~ 80 (171)
T PF00941_consen 76 ELEES 80 (171)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 99876
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=94.68 E-value=0.1 Score=51.34 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=83.0
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCHHHHHHH
Q 035812 62 AIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-DINIADETAWVQAGATIGELYYQ 140 (520)
Q Consensus 62 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~~ 140 (520)
..+.|+|.+|..++++ +++-...+.+||+++.... ......++||++++ .. .+..+++.+++|+++++.++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 3678999999988765 3433467899999974221 11123688999975 44 44456679999999999999864
Q ss_pred H------HhcCCcceecCCCCCCccchhhhhcCCCCCCccccCccccc-----eeEEEEEeecccEEeeccCCchhhhhh
Q 035812 141 I------SNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGLSSDN-----VVDAQLVDVEGRILNRESMGEDLFWAI 209 (520)
Q Consensus 141 l------~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~-----v~~~~vV~~~G~~~~~~~~~~dl~~a~ 209 (520)
. .+.-. ..--+..-...+|||.+..+-- ..|. .+..+|+..+++.+.. .|+|
T Consensus 79 ~~~~~~L~~a~~-~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~--- 141 (258)
T PRK09799 79 RFIPAALREALG-FVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYL--- 141 (258)
T ss_pred cccHHHHHHHHH-HhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhc---
Confidence 2 11100 0000122344568887764421 1333 2566777777754422 3444
Q ss_pred hccCCCCeEEEEEEEEE
Q 035812 210 RGGGGESFGVILAWKIK 226 (520)
Q Consensus 210 rG~g~g~fGivt~~~~~ 226 (520)
.|.. =.|||++.+.
T Consensus 142 ~g~~---~Eil~~I~iP 155 (258)
T PRK09799 142 ACPC---DRLLTEIIIP 155 (258)
T ss_pred CCCC---CcEEEEEEcC
Confidence 2322 2588888664
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=93.38 E-value=0.26 Score=48.47 Aligned_cols=142 Identities=14% Similarity=0.113 Sum_probs=80.4
Q ss_pred EEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCHHHHHHH-
Q 035812 63 IVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-DINIADETAWVQAGATIGELYYQ- 140 (520)
Q Consensus 63 vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~~- 140 (520)
++.|+|.+|..++++ +++-.-.+.+||+++.-.-. .....++||++++ .. .|..+.+.+++|+++++.++.+.
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~-~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~ 78 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPT-RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNE 78 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhc-ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCc
Confidence 578999999888765 34324577899999752211 1112588999875 44 34445578999999999998752
Q ss_pred -----HHhcCCcceecCCCCCCccchhhhhcCCCCCCccccCc--cccceeEEEEEeecccEEeeccCCchhhhhhhccC
Q 035812 141 -----ISNVSKLHAFPAGVCPTIGAGGHITGGGYGNLMRKYGL--SSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGG 213 (520)
Q Consensus 141 -----l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~--~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g 213 (520)
|.+.- ...--+..-+..++||.+..+--. +- ..=..+..+|+..+++.+.. .|+|- |..
T Consensus 79 ~~~~~L~~aa-~~va~~qIRN~gTlGGNl~~a~p~------~D~~~~LlaldA~v~l~~~r~vp~----~dF~~---g~~ 144 (257)
T TIGR03312 79 LTPAALKEAL-GFVYSRHIRNQATIGGEIAAFQSE------SLLLPVLLALKATVVLANASQMDI----EDYLA---SEQ 144 (257)
T ss_pred chHHHHHHHH-HHhCCHHHhccccHHHHhhcCCCc------hHHHHHHHHcCCEEEEecCcEEeH----HHhcC---CCC
Confidence 21210 000012233456688887754321 11 11122556666666544421 35442 222
Q ss_pred CCCeEEEEEEEEE
Q 035812 214 GESFGVILAWKIK 226 (520)
Q Consensus 214 ~g~fGivt~~~~~ 226 (520)
+ -+||++.+.
T Consensus 145 -~--Ell~~V~iP 154 (257)
T TIGR03312 145 -R--ELIVEVIIP 154 (257)
T ss_pred -C--cEEEEEEcC
Confidence 2 488888664
No 37
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=91.78 E-value=0.44 Score=51.03 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=55.7
Q ss_pred ccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCc-ccCCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCHHHH
Q 035812 60 PLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLS-YTSTVPFVVLDMFNLRKI-DINIADETAWVQAGATIGEL 137 (520)
Q Consensus 60 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~-~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l 137 (520)
..-+++|+|.+|+.++++- +. ...+.+||+++.-.- ........+||++++... .|..++..++|||++++.|+
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 3467999999999988763 32 467899999963211 111113688999876544 34445578999999999999
Q ss_pred HHHHHh
Q 035812 138 YYQISN 143 (520)
Q Consensus 138 ~~~l~~ 143 (520)
.+.+.+
T Consensus 268 ~~~l~~ 273 (467)
T TIGR02963 268 YAALAK 273 (467)
T ss_pred HHHHHH
Confidence 876654
No 38
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=90.82 E-value=0.79 Score=44.48 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.3
Q ss_pred ccHHHHHHHHhhcCCCCCCCCC
Q 035812 489 GNYKRLVEVKTKVDPFNFFKNE 510 (520)
Q Consensus 489 ~n~~RL~~iK~kYDP~nvF~~~ 510 (520)
.++++.++||+++||+++|.+.
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCH
Confidence 5899999999999999999875
No 39
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=90.19 E-value=0.5 Score=47.41 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=51.1
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCC-cccCCCCeEEEEeeccccE-EEe-CCCCEEEEcCCCCHHHHH
Q 035812 62 AIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGL-SYTSTVPFVVLDMFNLRKI-DIN-IADETAWVQAGATIGELY 138 (520)
Q Consensus 62 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-~~~~~~~gvvIdl~~~~~i-~~d-~~~~~v~v~aG~~~~~l~ 138 (520)
-++.|+|.+|..++++. +. ...+.+||+++... .........+||++++... .|. .+++.+++|+++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 57899999999888763 22 35789999996321 1111123688999876544 333 234679999999999998
Q ss_pred H
Q 035812 139 Y 139 (520)
Q Consensus 139 ~ 139 (520)
+
T Consensus 82 ~ 82 (291)
T PRK09971 82 E 82 (291)
T ss_pred c
Confidence 5
No 40
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=90.00 E-value=0.56 Score=47.60 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=49.9
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCc-ccCCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCHHHHHH
Q 035812 62 AIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLS-YTSTVPFVVLDMFNLRKI-DINIADETAWVQAGATIGELYY 139 (520)
Q Consensus 62 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~-~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~ 139 (520)
-.+.|+|.+|..++++- +. .-.+.+||+++...- ........+||+.++... .|..+.+.+++|+++++.++.+
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 47899999998887653 32 346899999853211 111122688999875443 2333457899999999999864
No 41
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=89.79 E-value=0.11 Score=51.34 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=23.5
Q ss_pred hhhccccccHHHHHHHHhhcCCCCCCCCCCCC
Q 035812 482 YGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSI 513 (520)
Q Consensus 482 ~~~~y~g~n~~RL~~iK~kYDP~nvF~~~qsI 513 (520)
|. .-||+.++|+++.|++|||.+++.-.|.|
T Consensus 250 W~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 250 WR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 84 57899999999999999999999888877
No 42
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=87.54 E-value=0.73 Score=45.54 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCC-ccc-CCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCHHHHHH
Q 035812 66 PNHRSHVQATIKCSNQAGLELRIRSGGHDYEGL-SYT-STVPFVVLDMFNLRKI-DINIADETAWVQAGATIGELYY 139 (520)
Q Consensus 66 p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-~~~-~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~~ 139 (520)
|+|.+|+.+++.- +. ...+.+||+++.-. ... ......+||++++... .|..+++.+++|+++++.++.+
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~ 73 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRK 73 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhh
Confidence 7788888887763 22 36789999986321 111 0112688999986655 4555668999999999999964
No 43
>PLN02906 xanthine dehydrogenase
Probab=80.64 E-value=2.5 Score=51.29 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=54.7
Q ss_pred cEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCc-ccCCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCHHHHH
Q 035812 61 LAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLS-YTSTVPFVVLDMFNLRKI-DINIADETAWVQAGATIGELY 138 (520)
Q Consensus 61 ~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~-~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~ 138 (520)
.-.++|+|.+|+.++++- +. ...+.+||+++.-.- .......++||++++... .|..+...++|||++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 357899999999987653 21 357889999973211 111123688999875544 344455789999999999999
Q ss_pred HHHHh
Q 035812 139 YQISN 143 (520)
Q Consensus 139 ~~l~~ 143 (520)
+.|.+
T Consensus 305 ~~l~~ 309 (1319)
T PLN02906 305 NLFRK 309 (1319)
T ss_pred HHHHH
Confidence 86544
No 44
>PLN00192 aldehyde oxidase
Probab=80.10 E-value=4 Score=49.64 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=56.4
Q ss_pred ccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCHHHHH
Q 035812 60 PLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKI-DINIADETAWVQAGATIGELY 138 (520)
Q Consensus 60 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~ 138 (520)
..-.++|+|.+|+.+++.-....+-...+..||+++.-.-. .....++||++++... .|..++..++|||++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKD-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeec-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 34688999999999887631100123678899999642211 2223688999875544 344455789999999999998
Q ss_pred HHHHhc
Q 035812 139 YQISNV 144 (520)
Q Consensus 139 ~~l~~~ 144 (520)
..+...
T Consensus 312 ~~l~~~ 317 (1344)
T PLN00192 312 EALREE 317 (1344)
T ss_pred HHHHhh
Confidence 765543
No 45
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=77.98 E-value=5.3 Score=48.57 Aligned_cols=78 Identities=8% Similarity=0.092 Sum_probs=54.7
Q ss_pred cEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCc-ccCCCCeEEEEeeccccE-EEeCCCCEEEEcCCCCHHHHH
Q 035812 61 LAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLS-YTSTVPFVVLDMFNLRKI-DINIADETAWVQAGATIGELY 138 (520)
Q Consensus 61 ~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~-~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~ 138 (520)
.-.+.|+|.+|+.++++- +. .-.+..||+++.-.- ........+||++++..+ .|..+++.++|||++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 357899999999988763 22 357889999974211 111112578999876554 344456789999999999999
Q ss_pred HHHH
Q 035812 139 YQIS 142 (520)
Q Consensus 139 ~~l~ 142 (520)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8654
No 46
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=77.82 E-value=1.4 Score=43.38 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=18.6
Q ss_pred hhhccccccHHHHHHHHhhcCCCCCCCCC
Q 035812 482 YGAKYFKGNYKRLVEVKTKVDPFNFFKNE 510 (520)
Q Consensus 482 ~~~~y~g~n~~RL~~iK~kYDP~nvF~~~ 510 (520)
....| .++++.+++|+++||+|+|.++
T Consensus 228 l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 228 LRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 33444 7999999999999999999863
No 47
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=73.65 E-value=3.8 Score=39.21 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=19.5
Q ss_pred hhhccccc-cHHHHHHHHhhcCCCCCCC
Q 035812 482 YGAKYFKG-NYKRLVEVKTKVDPFNFFK 508 (520)
Q Consensus 482 ~~~~y~g~-n~~RL~~iK~kYDP~nvF~ 508 (520)
|-...+|. -+.-+++||+.+||+|+++
T Consensus 217 ~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 217 YLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 33344554 7999999999999999985
No 48
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=72.29 E-value=8.1 Score=39.50 Aligned_cols=138 Identities=18% Similarity=0.097 Sum_probs=80.3
Q ss_pred cEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCC-CCeEEEEeeccccE-EEeCCCCEEEEcCCCCHHHHH
Q 035812 61 LAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTST-VPFVVLDMFNLRKI-DINIADETAWVQAGATIGELY 138 (520)
Q Consensus 61 ~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~-~~gvvIdl~~~~~i-~~d~~~~~v~v~aG~~~~~l~ 138 (520)
..++.|.+.+|...++. .+-..++..|++++.-..+... +-..||-+.++... +|+...+.+++|+|+++.|.+
T Consensus 204 ~r~~~P~~l~D~a~l~a----a~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a~ 279 (493)
T COG4630 204 DRFIVPATLADFADLLA----AHPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQAY 279 (493)
T ss_pred ceeEeeccHHHHHHHHh----hCCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHHH
Confidence 45789999999988764 2345677778887543222110 11345555555554 455567899999999999999
Q ss_pred HHHHhcCCccee---cCCCC---CCccchhhhhcCCCCCCccccCcccc--ceeEEEEEeecccEEe-eccCCchhhhhh
Q 035812 139 YQISNVSKLHAF---PAGVC---PTIGAGGHITGGGYGNLMRKYGLSSD--NVVDAQLVDVEGRILN-RESMGEDLFWAI 209 (520)
Q Consensus 139 ~~l~~~g~~~~~---~~g~~---~~vgigG~~~ggg~g~~~~~~G~~~d--~v~~~~vV~~~G~~~~-~~~~~~dl~~a~ 209 (520)
..|...--.+.- --|.. +.-+|||.+..| |. -|-+.- ..++.++++..|+-.+ .. =.|+|-++
T Consensus 280 ~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIang-----SP-IGDtPPaLIALgA~ltLr~g~~~RtlP--Le~~Fi~Y 351 (493)
T COG4630 280 RALAGRYPALGELWDRFGGEQVRNMGTLGGNIANG-----SP-IGDTPPALIALGATLTLRSGDGRRTLP--LEDYFIAY 351 (493)
T ss_pred HHHHhhCchHHHHHHHhcchhhhccccccccccCC-----Cc-CCCCCchhhhcCcEEEEEecCCccccc--HHHHHHHh
Confidence 999875211100 01211 223355544433 22 233322 2377888887776553 22 24778777
Q ss_pred h
Q 035812 210 R 210 (520)
Q Consensus 210 r 210 (520)
+
T Consensus 352 ~ 352 (493)
T COG4630 352 G 352 (493)
T ss_pred h
Confidence 4
No 49
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=68.68 E-value=18 Score=36.12 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=52.2
Q ss_pred ccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCccc-CCCCeEEEEeeccc-cE-EEeCCCCEEEEcCCCCHHH
Q 035812 60 PLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYT-STVPFVVLDMFNLR-KI-DINIADETAWVQAGATIGE 136 (520)
Q Consensus 60 p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~-~~~~gvvIdl~~~~-~i-~~d~~~~~v~v~aG~~~~~ 136 (520)
+..+.+|.|.+|-.++++ +.. --.+.+|||++.-.-.. .....-+||+.++. .. .+..+.+.+++||-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 556788999888777665 455 67899999997631111 11125779998874 22 2334567799999999999
Q ss_pred HHH
Q 035812 137 LYY 139 (520)
Q Consensus 137 l~~ 139 (520)
+.+
T Consensus 79 i~~ 81 (284)
T COG1319 79 IAR 81 (284)
T ss_pred HHh
Confidence 963
No 50
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=68.44 E-value=9 Score=42.05 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.3
Q ss_pred ccHHHHHHHHhhcCCCCCCCCC
Q 035812 489 GNYKRLVEVKTKVDPFNFFKNE 510 (520)
Q Consensus 489 ~n~~RL~~iK~kYDP~nvF~~~ 510 (520)
.++++.++|++++||+++|.++
T Consensus 482 P~~~dF~alR~~~DP~g~F~N~ 503 (557)
T TIGR01677 482 PNADKFLKVKDSYDPKGLFSSE 503 (557)
T ss_pred CCHHHHHHHHHhcCCCCccCCH
Confidence 4999999999999999999875
No 51
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=67.67 E-value=17 Score=39.08 Aligned_cols=108 Identities=17% Similarity=0.300 Sum_probs=69.8
Q ss_pred hHHHHhhccCCCCCCCCCcceEEcCCCCchHHHHHhhhcCcccCCCCCCCccEEEecCCHHHHHHHHHHHHHC-CCeEEE
Q 035812 10 ELFLKCLLHDHVEPSNPISELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQA-GLELRI 88 (520)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~-~~~~~~ 88 (520)
+.|.+-+++. . .+|.+.++.-+=|+-+.+.. ++..+ .....|...++|.+.++|..+|++|+++ ..|+.+
T Consensus 111 krLv~kara~-G---~~I~gvvIsAGIP~le~A~E-lI~~L----~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIil 181 (717)
T COG4981 111 KRLVQKARAS-G---APIDGVVISAGIPSLEEAVE-LIEEL----GDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIIL 181 (717)
T ss_pred HHHHHHHHhc-C---CCcceEEEecCCCcHHHHHH-HHHHH----hhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEE
Confidence 3455556655 2 46899999999999988754 33222 2345899999999999999999999997 556665
Q ss_pred -----EeCccC-CCCCcccCCCCeEEEEe-eccccEEEeCCCCEEEEcCCCCHHH
Q 035812 89 -----RSGGHD-YEGLSYTSTVPFVVLDM-FNLRKIDINIADETAWVQAGATIGE 136 (520)
Q Consensus 89 -----~ggGh~-~~g~~~~~~~~gvvIdl-~~~~~i~~d~~~~~v~v~aG~~~~~ 136 (520)
|+|||. |..... ++|-+ +.+++ .++-++.||+|.-..+
T Consensus 182 q~egGraGGHHSweDld~------llL~tYs~lR~----~~NIvl~vGgGiGtp~ 226 (717)
T COG4981 182 QWEGGRAGGHHSWEDLDD------LLLATYSELRS----RDNIVLCVGGGIGTPD 226 (717)
T ss_pred EEecCccCCccchhhccc------HHHHHHHHHhc----CCCEEEEecCCcCChh
Confidence 345554 554321 22211 33332 2334677888875533
No 52
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=62.88 E-value=25 Score=34.51 Aligned_cols=91 Identities=13% Similarity=0.043 Sum_probs=59.8
Q ss_pred ceEEcCCCCchHHHHHhhhcCcccCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEE
Q 035812 29 ELIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVV 108 (520)
Q Consensus 29 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvv 108 (520)
..|++|+-++-+.... . ...++.+|++++-+...+.|.+-++.=|||... ... -++
T Consensus 133 a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~---~~~---D~l 188 (263)
T COG0351 133 ATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG---EAV---DVL 188 (263)
T ss_pred CeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC---Cce---eEE
Confidence 5799999998877632 1 267899999999999999999988888899864 111 233
Q ss_pred EEeeccccE---EEeCCCCEEEEcCCCCHHHHHHHHHhcCC
Q 035812 109 LDMFNLRKI---DINIADETAWVQAGATIGELYYQISNVSK 146 (520)
Q Consensus 109 Idl~~~~~i---~~d~~~~~v~v~aG~~~~~l~~~l~~~g~ 146 (520)
.|-..+..+ .++. .=+=|.|+++.-....-..+|.
T Consensus 189 ~~~~~~~~f~~~ri~t---~~tHGTGCTlSaAIaa~LA~G~ 226 (263)
T COG0351 189 YDGGSFYTFEAPRIPT---KNTHGTGCTLSAAIAANLAKGL 226 (263)
T ss_pred EcCCceEEEeccccCC---CCCCCccHHHHHHHHHHHHcCC
Confidence 332212211 1221 1246889998876655555553
No 53
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=60.99 E-value=33 Score=30.39 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=30.9
Q ss_pred EEecCCHHHHHHHHHHHHHCCCeEEEEeC-ccCCCCCc
Q 035812 63 IVTPNHRSHVQATIKCSNQAGLELRIRSG-GHDYEGLS 99 (520)
Q Consensus 63 vv~p~~~~dv~~~v~~a~~~~~~~~~~gg-Gh~~~g~~ 99 (520)
=+-|.+.+.+...++|++.+++||.+... |+.+.+..
T Consensus 9 Evwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~myV 46 (165)
T PF03614_consen 9 EVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMYV 46 (165)
T ss_pred ccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEEE
Confidence 36789999999999999999999999874 77765443
No 54
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=60.94 E-value=5.1 Score=42.41 Aligned_cols=25 Identities=20% Similarity=0.390 Sum_probs=21.6
Q ss_pred cccccHHHHHHHHhhcCCCCCCCCCC
Q 035812 486 YFKGNYKRLVEVKTKVDPFNFFKNEQ 511 (520)
Q Consensus 486 y~g~n~~RL~~iK~kYDP~nvF~~~q 511 (520)
.|+ ++++.++||++|||+++|.+..
T Consensus 389 ~YP-~~~~F~~~r~~~DP~g~F~n~~ 413 (419)
T TIGR01679 389 RYP-RWDDFAAVRDDLDPDRRFLNPY 413 (419)
T ss_pred HCc-CHHHHHHHHHHhCCCCccCCHH
Confidence 344 7999999999999999998764
No 55
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=60.13 E-value=4.6 Score=42.21 Aligned_cols=22 Identities=27% Similarity=0.653 Sum_probs=20.1
Q ss_pred ccHHHHHHHHhhcCCCCCCCCC
Q 035812 489 GNYKRLVEVKTKVDPFNFFKNE 510 (520)
Q Consensus 489 ~n~~RL~~iK~kYDP~nvF~~~ 510 (520)
.|+++..+||+++||+++|..+
T Consensus 485 ~n~~~flkvr~~lDP~~lFsse 506 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSSE 506 (518)
T ss_pred cChHHHHHHHHhcCccchhhhh
Confidence 6999999999999999999654
No 56
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=55.00 E-value=7.1 Score=41.22 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=22.5
Q ss_pred hhhcccc-ccHHHHHHHHhhcCCCCCCC
Q 035812 482 YGAKYFK-GNYKRLVEVKTKVDPFNFFK 508 (520)
Q Consensus 482 ~~~~y~g-~n~~RL~~iK~kYDP~nvF~ 508 (520)
|-...|+ ..++-|++||+.+||+|+++
T Consensus 383 ~~~~~~~~~~~~~~~~iK~~fDP~~ilN 410 (413)
T TIGR00387 383 FMPYKFNEKELETMRAIKKAFDPDNILN 410 (413)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcCcCCC
Confidence 5555566 47999999999999999986
No 57
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=43.68 E-value=36 Score=34.47 Aligned_cols=57 Identities=23% Similarity=0.372 Sum_probs=39.3
Q ss_pred eEEcCCCCchHHHHHhhhcCcccCCCCCCCccEEEecCC------HHHHHHHHHHHHHCC------CeEEEEeCcc
Q 035812 30 LIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNH------RSHVQATIKCSNQAG------LELRIRSGGH 93 (520)
Q Consensus 30 ~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~------~~dv~~~v~~a~~~~------~~~~~~ggGh 93 (520)
.|..|....|.+..+. -+.||. ....+++|.. +++|.++++.+.+.+ +=+.+||||.
T Consensus 19 vITs~~gAa~~D~~~~--~~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 19 VITSPTGAAIQDFLRT--LKRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEeCCchHHHHHHHHH--HHHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 3556677788887653 334663 4556666654 688999999998754 5677888873
No 58
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=39.99 E-value=31 Score=31.95 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCccCCC
Q 035812 72 VQATIKCSNQAGLELRIRSGGHDYE 96 (520)
Q Consensus 72 v~~~v~~a~~~~~~~~~~ggGh~~~ 96 (520)
..+.++|++++++||.|.++|.++.
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 4567899999999999999999864
No 59
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=39.49 E-value=1.6e+02 Score=30.90 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=32.3
Q ss_pred CccEEEecCCHHHHHHHHHHHHHCCCeEEEEeCc
Q 035812 59 KPLAIVTPNHRSHVQATIKCSNQAGLELRIRSGG 92 (520)
Q Consensus 59 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggG 92 (520)
....|+.|+-.|-..++.+.|+++|+++.-|+.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 5678999999999999999999999999999988
No 60
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=39.30 E-value=20 Score=37.04 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=18.5
Q ss_pred ccc-HHHHHHHHhhcCCCCCCCC
Q 035812 488 KGN-YKRLVEVKTKVDPFNFFKN 509 (520)
Q Consensus 488 g~n-~~RL~~iK~kYDP~nvF~~ 509 (520)
..+ .+-.++||+++||.++|+-
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 455 6888999999999999963
No 61
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.19 E-value=40 Score=31.02 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=31.1
Q ss_pred ccCCCCCCCccEEEecCCHHHHHHHHHHHHHCCCeEEEE
Q 035812 51 RFLTPSTPKPLAIVTPNHRSHVQATIKCSNQAGLELRIR 89 (520)
Q Consensus 51 r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ 89 (520)
||-. ...|..||++++++++.++.+.|++.+++..+.
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i 154 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHLI 154 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEE
Confidence 6754 358999999999999999999999998875543
No 62
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=37.88 E-value=20 Score=38.91 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=24.4
Q ss_pred hhhcccc-ccHHHHHHHHhhcCCCCCCCCCCCC
Q 035812 482 YGAKYFK-GNYKRLVEVKTKVDPFNFFKNEQSI 513 (520)
Q Consensus 482 ~~~~y~g-~n~~RL~~iK~kYDP~nvF~~~qsI 513 (520)
|-...|| +.++-+++||+.+||+++++-..-+
T Consensus 440 ~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~ 472 (499)
T PRK11230 440 QMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNI 472 (499)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEe
Confidence 4444556 6799999999999999999754433
No 63
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=36.77 E-value=23 Score=38.90 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=26.6
Q ss_pred hhhcccc-ccHHHHHHHHhhcCCCCCCCCCCCCC
Q 035812 482 YGAKYFK-GNYKRLVEVKTKVDPFNFFKNEQSIP 514 (520)
Q Consensus 482 ~~~~y~g-~n~~RL~~iK~kYDP~nvF~~~qsI~ 514 (520)
|-..+|| +.++-+++||+.+||+|+++-..=++
T Consensus 517 ~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~ 550 (555)
T PLN02805 517 YLEKELGIEALQTMKRIKKALDPNNIMNPGKLIP 550 (555)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeC
Confidence 6667777 57999999999999999997555443
No 64
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.13 E-value=53 Score=34.93 Aligned_cols=56 Identities=23% Similarity=0.396 Sum_probs=39.4
Q ss_pred eEEcCCCCchHHHHHhhhcCcccCCCCCCCccEEEecCCH------HHHHHHHHHHHHC--CCeEEEEeCc
Q 035812 30 LIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNHR------SHVQATIKCSNQA--GLELRIRSGG 92 (520)
Q Consensus 30 ~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~------~dv~~~v~~a~~~--~~~~~~~ggG 92 (520)
.|..|....+.+.++ .-+.||. .-..+++|..+ .+|.++++.+.+. .+=+.+||||
T Consensus 140 viTs~~gAa~~D~~~--~~~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 140 VITSPTGAAIRDILT--VLRRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred EEeCCccHHHHHHHH--HHHhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 355667778888865 3456774 24566666655 8899999988874 6677888888
No 65
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=29.46 E-value=66 Score=34.02 Aligned_cols=56 Identities=27% Similarity=0.484 Sum_probs=36.5
Q ss_pred eEEcCCCCchHHHHHhhhcCcccCCCCCCCccEEEecCC------HHHHHHHHHHHHHCC-Ce--EEEEeCc
Q 035812 30 LIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPNH------RSHVQATIKCSNQAG-LE--LRIRSGG 92 (520)
Q Consensus 30 ~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~------~~dv~~~v~~a~~~~-~~--~~~~ggG 92 (520)
.|..|......+.+. .-..||. .-..+++|.. .++|.++|+.|++.+ +- +..||||
T Consensus 140 VITS~tgAairDIl~--~~~rR~P-----~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGG 204 (440)
T COG1570 140 VITSPTGAALRDILH--TLSRRFP-----SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGG 204 (440)
T ss_pred EEcCCchHHHHHHHH--HHHhhCC-----CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcc
Confidence 455666677777655 2345774 3456666665 478999999999876 44 5555555
No 66
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=26.28 E-value=41 Score=36.73 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcCCCCCCCCC
Q 035812 491 YKRLVEVKTKVDPFNFFKNE 510 (520)
Q Consensus 491 ~~RL~~iK~kYDP~nvF~~~ 510 (520)
+++.++|++++||+++|.++
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 68889999999999999875
No 67
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=26.27 E-value=1.2e+02 Score=26.01 Aligned_cols=31 Identities=0% Similarity=0.025 Sum_probs=28.4
Q ss_pred CccEEEecCCHHHHHHHHHHHHHCCCeEEEE
Q 035812 59 KPLAIVTPNHRSHVQATIKCSNQAGLELRIR 89 (520)
Q Consensus 59 ~p~~vv~p~~~~dv~~~v~~a~~~~~~~~~~ 89 (520)
....|++..+++|+.++-+-|++.+++..++
T Consensus 55 ~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 55 MHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 7899999999999999999999999887763
No 68
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=26.22 E-value=98 Score=27.63 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=26.0
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCeEEEEe
Q 035812 62 AIVTPNHRSHVQATIKCSNQAGLELRIRS 90 (520)
Q Consensus 62 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~g 90 (520)
.|+.|.+.+|+..+++.|-+.+-|+.+|=
T Consensus 126 ~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 126 TVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred EEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 68999999999999999998887888873
No 69
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=25.68 E-value=53 Score=34.95 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=36.5
Q ss_pred eEEcCCCCchHHHHHhhhcCcccCCCCCCCccEEEecC------CHHHHHHHHHHHHHC---CCeEEEEeCc
Q 035812 30 LIYTRNNSSFQSVLNAYIKNRRFLTPSTPKPLAIVTPN------HRSHVQATIKCSNQA---GLELRIRSGG 92 (520)
Q Consensus 30 ~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~------~~~dv~~~v~~a~~~---~~~~~~~ggG 92 (520)
.|..|....+.+.++ .-+.||.. -..+++|. .+.+|.++++.+.+. .+=+.+||||
T Consensus 134 vits~~~aa~~D~~~--~~~~r~p~-----~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGG 198 (432)
T TIGR00237 134 VITSQTGAALADILH--ILKRRDPS-----LKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGG 198 (432)
T ss_pred EEeCCccHHHHHHHH--HHHhhCCC-----ceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCC
Confidence 355677778888865 33567742 23445554 457899999988863 4457777777
No 70
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=25.53 E-value=4.7e+02 Score=28.99 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=48.9
Q ss_pred Ccc-EEEecCCHHHHHHHHHHHHHCC-CeEEEEeC-ccCCCCCcccCCCCeEEEEeeccccEEEeCCCCEEEEcCCCCHH
Q 035812 59 KPL-AIVTPNHRSHVQATIKCSNQAG-LELRIRSG-GHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIG 135 (520)
Q Consensus 59 ~p~-~vv~p~~~~dv~~~v~~a~~~~-~~~~~~gg-Gh~~~g~~~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~~~ 135 (520)
.|- .|..|++++|+++++.+|..++ -|+.+|=- |+....... .. .-.++..+ ..-+-+...++.+.-|..+.
T Consensus 440 iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~-~~--~~~~~~Gk--~~i~~~G~~vail~~G~~~~ 514 (627)
T COG1154 440 IPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILT-PE--LEPLEIGK--GELLKEGEKVAILAFGTMLP 514 (627)
T ss_pred CCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcc-cc--cccccccc--eEEEecCCcEEEEecchhhH
Confidence 555 5788999999999999999998 69998853 433322111 00 12233333 11223456788888888887
Q ss_pred HHHHHH
Q 035812 136 ELYYQI 141 (520)
Q Consensus 136 ~l~~~l 141 (520)
......
T Consensus 515 ~al~va 520 (627)
T COG1154 515 EALKVA 520 (627)
T ss_pred HHHHHH
Confidence 655443
No 71
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=25.34 E-value=44 Score=36.82 Aligned_cols=26 Identities=12% Similarity=0.369 Sum_probs=21.5
Q ss_pred hhhccccccHHHHHHHHhhcCCCCCCCCC
Q 035812 482 YGAKYFKGNYKRLVEVKTKVDPFNFFKNE 510 (520)
Q Consensus 482 ~~~~y~g~n~~RL~~iK~kYDP~nvF~~~ 510 (520)
....| + +++.++|++++||+++|.++
T Consensus 539 L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 539 LRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 44444 5 99999999999999999874
No 72
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=25.12 E-value=1.5e+02 Score=29.61 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=38.0
Q ss_pred EEcCCCCchHHHHHhhhcCcccCCCCCCCcc-EEEecCCHHHHHHHHHHHHHCCCeEEEEe
Q 035812 31 IYTRNNSSFQSVLNAYIKNRRFLTPSTPKPL-AIVTPNHRSHVQATIKCSNQAGLELRIRS 90 (520)
Q Consensus 31 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~-~vv~p~~~~dv~~~v~~a~~~~~~~~~~g 90 (520)
|=.|.+-+|.+..+. +|. -++..-++++|.+++.++.+.++|+.+.|
T Consensus 242 iP~p~~vd~~~wlk~-------------ypg~gfv~~v~pe~veev~~v~~~~g~~a~~~G 289 (324)
T COG2144 242 IPYPADVDFRQWLKR-------------YPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIG 289 (324)
T ss_pred cCCcccccHHHHHHh-------------CCCCcEEEEeCHHHHHHHHHHHHHcCCceEEEE
Confidence 557888888876552 455 56777788899999999999999999987
No 73
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=24.45 E-value=53 Score=29.90 Aligned_cols=81 Identities=12% Similarity=0.260 Sum_probs=51.7
Q ss_pred cccchhHHHHhhccCCCCCCCCCcceEEcCC---------CCchHHHHHhhhcCcccCCCCCCCcc----EEEecCCHHH
Q 035812 5 QDSNLELFLKCLLHDHVEPSNPISELIYTRN---------NSSFQSVLNAYIKNRRFLTPSTPKPL----AIVTPNHRSH 71 (520)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~p~---------~~~y~~~~~~~~~n~r~~~~~~~~p~----~vv~p~~~~d 71 (520)
|..+.++|..+|...+--.|.+|.+-.++-+ |=.|+....++.. .-..|- .+-.--+...
T Consensus 52 SaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqve-------A~g~~GDvLigISTSGNS~n 124 (176)
T COG0279 52 SAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVE-------ALGQPGDVLIGISTSGNSKN 124 (176)
T ss_pred chhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHH-------hcCCCCCEEEEEeCCCCCHH
Confidence 4568899999998887666777776555433 3345555432221 111232 2223345688
Q ss_pred HHHHHHHHHHCCCeEEEEeCc
Q 035812 72 VQATIKCSNQAGLELRIRSGG 92 (520)
Q Consensus 72 v~~~v~~a~~~~~~~~~~ggG 92 (520)
|.++++.|++.++.+.+.-|-
T Consensus 125 Vl~Ai~~Ak~~gm~vI~ltG~ 145 (176)
T COG0279 125 VLKAIEAAKEKGMTVIALTGK 145 (176)
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 999999999999988876543
No 74
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=23.52 E-value=1.2e+02 Score=27.59 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=26.6
Q ss_pred cEEEecCCHHHHHHHHHHHHH--CCCeEEEEeCc
Q 035812 61 LAIVTPNHRSHVQATIKCSNQ--AGLELRIRSGG 92 (520)
Q Consensus 61 ~~vv~p~~~~dv~~~v~~a~~--~~~~~~~~ggG 92 (520)
..|+.|.+.+|+..++++|-+ .+-|+.+|-.-
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 478999999999999999999 66888888643
No 75
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=21.43 E-value=92 Score=31.30 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHHHHHCCCeEEEE--eCccC
Q 035812 66 PNHRSHVQATIKCSNQAGLELRIR--SGGHD 94 (520)
Q Consensus 66 p~~~~dv~~~v~~a~~~~~~~~~~--ggGh~ 94 (520)
.-|.+|++++|++|+++||.|.+- .=||.
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 458899999999999999988764 34665
No 76
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=21.37 E-value=1.8e+02 Score=24.62 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=30.9
Q ss_pred CCccEEEecCCHHHHHHHHHHHHHCCCeE-EEEeCccC
Q 035812 58 PKPLAIVTPNHRSHVQATIKCSNQAGLEL-RIRSGGHD 94 (520)
Q Consensus 58 ~~p~~vv~p~~~~dv~~~v~~a~~~~~~~-~~~ggGh~ 94 (520)
..+..|+++.+++++.++.+-|++.+++. .++-.|+.
T Consensus 46 G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 46 GQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 47999999999999999999999999884 45556654
No 77
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=21.26 E-value=92 Score=31.78 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEe--CccC
Q 035812 67 NHRSHVQATIKCSNQAGLELRIRS--GGHD 94 (520)
Q Consensus 67 ~~~~dv~~~v~~a~~~~~~~~~~g--gGh~ 94 (520)
-|.+||+++|++|++.||.|.+-= =||+
T Consensus 72 YT~~di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCcHHH
Confidence 489999999999999999988642 3665
No 78
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=20.76 E-value=1e+02 Score=23.70 Aligned_cols=33 Identities=12% Similarity=0.321 Sum_probs=23.1
Q ss_pred EEEecCCHHHHHHHHHHHHHCCCeEEEEeCccCCCCCcccCCCCeEEEEeecccc
Q 035812 62 AIVTPNHRSHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRK 116 (520)
Q Consensus 62 ~vv~p~~~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~gvvIdl~~~~~ 116 (520)
.++.|++.+|+.+++...++.+ .+++|++.|+.
T Consensus 2 ~v~~p~~~~D~~~i~~~l~~g~----------------------~Vivnl~~l~~ 34 (73)
T PF04472_consen 2 VVFEPKSFEDAREIVDALREGK----------------------IVIVNLENLDD 34 (73)
T ss_dssp EEEE-SSGGGHHHHHHHHHTT------------------------EEEE-TTS-H
T ss_pred EEEeeCCHHHHHHHHHHHHcCC----------------------EEEEECCCCCH
Confidence 4789999999999998877521 68889888774
No 79
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=20.75 E-value=86 Score=33.44 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEE--eCccC
Q 035812 67 NHRSHVQATIKCSNQAGLELRIR--SGGHD 94 (520)
Q Consensus 67 ~~~~dv~~~v~~a~~~~~~~~~~--ggGh~ 94 (520)
-|.+||+++|++|+.+||+|.+- .-||.
T Consensus 247 YT~eDv~evV~yarlRGIRVlpEfD~PgHt 276 (542)
T KOG2499|consen 247 YTREDVSEVVEYARLRGIRVLPEFDTPGHT 276 (542)
T ss_pred ecHHHHHHHHHHHHhccceeeecccCCccc
Confidence 47789999999999999999875 44665
No 80
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=20.67 E-value=1.9e+02 Score=27.23 Aligned_cols=39 Identities=13% Similarity=0.304 Sum_probs=32.6
Q ss_pred cccEEEeCCCCEEEEcCCCCHHHHHHHHHhcCCcceecCC
Q 035812 114 LRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAG 153 (520)
Q Consensus 114 ~~~i~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~g 153 (520)
.+++++|.+.+++.|+.-+.+.++...|...|+. ++.-|
T Consensus 34 i~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~-Avl~G 72 (247)
T KOG4656|consen 34 INSVEVDLEQQIVSVETSVPPSEIQNTLENTGRD-AVLRG 72 (247)
T ss_pred cceEEEEhhhcEEEEEccCChHHHHHHHHhhChh-eEEec
Confidence 4678899999999999999999999999988853 44433
No 81
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.08 E-value=1e+02 Score=31.01 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=24.3
Q ss_pred cCCHHHHHHHHHHHHHCCCeEEEE--eCccC
Q 035812 66 PNHRSHVQATIKCSNQAGLELRIR--SGGHD 94 (520)
Q Consensus 66 p~~~~dv~~~v~~a~~~~~~~~~~--ggGh~ 94 (520)
+-|.+||++++++|+++|+.|.+- .=||.
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 469999999999999999998874 33665
Done!