Query 035814
Match_columns 422
No_of_seqs 170 out of 289
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2184 Tuftelin-interacting p 100.0 6E-71 1.3E-75 586.4 25.6 376 32-409 279-688 (767)
2 PF07842 GCFC: GC-rich sequenc 100.0 2.1E-54 4.6E-59 424.4 20.9 238 95-333 1-257 (276)
3 KOG2184 Tuftelin-interacting p 99.7 9.1E-17 2E-21 172.8 10.2 201 120-333 421-635 (767)
4 PF07842 GCFC: GC-rich sequenc 99.7 5E-16 1.1E-20 152.7 13.9 178 117-306 80-276 (276)
5 PF12325 TMF_TATA_bd: TATA ele 83.4 10 0.00022 33.2 9.0 65 21-85 10-74 (120)
6 PF02520 DUF148: Domain of unk 75.4 17 0.00037 30.8 7.9 44 68-114 57-100 (113)
7 PRK14139 heat shock protein Gr 73.5 25 0.00055 33.0 9.1 89 33-121 38-132 (185)
8 PF02403 Seryl_tRNA_N: Seryl-t 63.6 5.8 0.00013 33.3 2.5 36 34-69 29-64 (108)
9 PF10234 Cluap1: Clusterin-ass 63.2 44 0.00095 33.3 8.8 56 30-85 164-220 (267)
10 PF04977 DivIC: Septum formati 57.1 26 0.00056 27.2 5.0 39 27-65 10-48 (80)
11 PF07217 Het-C: Heterokaryon i 55.4 2.7E+02 0.0058 30.9 13.6 223 54-347 294-544 (606)
12 PLN02678 seryl-tRNA synthetase 53.4 16 0.00034 39.0 4.1 33 34-66 33-65 (448)
13 PF10376 Mei5: Double-strand r 51.4 51 0.0011 31.8 6.9 92 23-122 108-208 (221)
14 PF15011 CK2S: Casein Kinase 2 51.1 1.4E+02 0.0031 27.4 9.6 67 48-114 64-144 (168)
15 PRK14155 heat shock protein Gr 51.0 1.2E+02 0.0026 29.0 9.3 106 30-135 16-135 (208)
16 PF07200 Mod_r: Modifier of ru 50.1 95 0.0021 27.5 8.1 84 27-110 37-141 (150)
17 TIGR00414 serS seryl-tRNA synt 49.4 20 0.00043 37.8 4.1 34 34-67 30-63 (418)
18 PRK14147 heat shock protein Gr 48.1 1.7E+02 0.0038 27.0 9.7 87 35-121 26-118 (172)
19 COG2433 Uncharacterized conser 45.0 1.1E+02 0.0025 33.8 8.9 82 34-115 415-496 (652)
20 PRK14156 heat shock protein Gr 42.6 2.1E+02 0.0045 26.8 9.2 90 32-122 32-127 (177)
21 PRK14158 heat shock protein Gr 42.2 2.5E+02 0.0055 26.6 9.9 97 39-135 52-158 (194)
22 PF04102 SlyX: SlyX; InterPro 41.4 1.2E+02 0.0026 23.6 6.4 43 41-83 4-46 (69)
23 PRK05431 seryl-tRNA synthetase 40.7 33 0.00071 36.2 4.1 72 33-111 27-98 (425)
24 PF01025 GrpE: GrpE; InterPro 40.2 1.9E+02 0.004 25.9 8.5 86 35-120 19-112 (165)
25 PF04363 DUF496: Protein of un 39.9 2.2E+02 0.0048 23.7 8.6 64 51-115 8-71 (95)
26 PF10158 LOH1CR12: Tumour supp 39.8 1.9E+02 0.0042 25.6 8.2 68 41-115 56-123 (131)
27 PF07851 TMPIT: TMPIT-like pro 39.8 69 0.0015 32.9 6.1 35 104-138 114-148 (330)
28 PF07106 TBPIP: Tat binding pr 39.8 1.6E+02 0.0035 26.6 8.1 54 47-108 71-124 (169)
29 PF04799 Fzo_mitofusin: fzo-li 39.5 1.1E+02 0.0024 28.5 6.8 30 58-87 123-152 (171)
30 PRK10884 SH3 domain-containing 38.9 1.8E+02 0.0038 27.8 8.4 37 94-130 154-190 (206)
31 COG0172 SerS Seryl-tRNA synthe 38.7 73 0.0016 33.9 6.2 79 33-111 28-107 (429)
32 PF04568 IATP: Mitochondrial A 38.3 75 0.0016 27.0 5.1 21 58-78 79-99 (100)
33 KOG3647 Predicted coiled-coil 37.7 2.3E+02 0.005 28.4 9.0 48 38-85 116-163 (338)
34 PLN02320 seryl-tRNA synthetase 37.6 37 0.0008 36.8 4.0 34 33-66 92-125 (502)
35 PF10146 zf-C4H2: Zinc finger- 37.5 1.5E+02 0.0033 28.8 7.8 40 41-80 32-71 (230)
36 PF03962 Mnd1: Mnd1 family; I 37.1 1.5E+02 0.0033 27.8 7.5 62 19-83 24-97 (188)
37 PRK14141 heat shock protein Gr 36.8 3.2E+02 0.0069 26.2 9.8 88 34-121 38-139 (209)
38 PRK14162 heat shock protein Gr 36.7 3.5E+02 0.0075 25.7 9.9 88 34-121 46-141 (194)
39 COG2433 Uncharacterized conser 36.1 1.4E+02 0.003 33.1 7.9 76 35-110 423-512 (652)
40 PRK02119 hypothetical protein; 36.0 1.4E+02 0.003 23.7 6.0 46 36-81 4-49 (73)
41 PF02609 Exonuc_VII_S: Exonucl 35.8 87 0.0019 23.0 4.6 30 70-106 4-33 (53)
42 PF11932 DUF3450: Protein of u 35.7 2.3E+02 0.005 27.4 8.9 38 46-83 40-77 (251)
43 PF06810 Phage_GP20: Phage min 34.0 2.9E+02 0.0063 25.0 8.7 36 41-76 13-48 (155)
44 PRK14163 heat shock protein Gr 33.9 3.4E+02 0.0074 26.2 9.4 82 35-121 48-135 (214)
45 PRK14157 heat shock protein Gr 33.8 1.4E+02 0.0031 29.0 6.9 53 34-86 84-142 (227)
46 PF12709 Kinetocho_Slk19: Cent 33.2 1.1E+02 0.0023 25.4 5.1 52 24-77 34-85 (87)
47 PF08317 Spc7: Spc7 kinetochor 33.0 3E+02 0.0066 27.8 9.6 45 38-82 220-264 (325)
48 TIGR02338 gimC_beta prefoldin, 32.5 1E+02 0.0022 26.1 5.2 49 25-73 57-106 (110)
49 COG2926 Uncharacterized protei 32.1 3.1E+02 0.0068 23.2 8.4 65 51-116 15-79 (109)
50 PRK04406 hypothetical protein; 31.5 2E+02 0.0043 23.0 6.3 43 39-81 9-51 (75)
51 PRK05423 hypothetical protein; 31.3 3.2E+02 0.007 23.1 8.4 62 52-114 16-77 (104)
52 PF06305 DUF1049: Protein of u 31.2 29 0.00063 26.4 1.5 39 21-59 28-66 (68)
53 PF11083 Streptin-Immun: Lanti 30.5 1.9E+02 0.0041 24.6 6.2 52 62-113 6-72 (99)
54 PRK10963 hypothetical protein; 30.5 2.4E+02 0.0053 26.9 8.0 60 38-105 41-100 (223)
55 PRK11637 AmiB activator; Provi 30.3 2E+02 0.0043 30.2 8.0 36 38-73 51-86 (428)
56 PRK03947 prefoldin subunit alp 30.2 1.7E+02 0.0038 25.5 6.5 47 40-86 5-51 (140)
57 PF14193 DUF4315: Domain of un 30.2 3.1E+02 0.0067 22.5 7.6 17 91-107 46-62 (83)
58 PRK14161 heat shock protein Gr 29.7 4.7E+02 0.01 24.4 10.2 89 47-135 39-140 (178)
59 TIGR01280 xseB exodeoxyribonuc 29.6 1.2E+02 0.0026 23.7 4.6 29 69-104 5-33 (67)
60 smart00787 Spc7 Spc7 kinetocho 29.5 4E+02 0.0086 27.1 9.7 47 38-84 215-261 (312)
61 TIGR02209 ftsL_broad cell divi 29.0 1.1E+02 0.0025 24.1 4.7 43 41-84 24-66 (85)
62 TIGR02231 conserved hypothetic 28.6 3.5E+02 0.0076 29.1 9.7 67 45-111 68-142 (525)
63 PRK09458 pspB phage shock prot 28.5 86 0.0019 25.3 3.7 25 56-80 43-67 (75)
64 PRK09343 prefoldin subunit bet 28.0 1.6E+02 0.0034 25.6 5.7 49 25-73 61-110 (121)
65 PRK14146 heat shock protein Gr 27.9 4.4E+02 0.0096 25.3 9.2 86 36-121 63-156 (215)
66 PRK09039 hypothetical protein; 27.8 2.9E+02 0.0062 28.4 8.4 47 38-84 120-166 (343)
67 PRK14153 heat shock protein Gr 27.7 5.3E+02 0.012 24.4 10.3 88 34-121 40-135 (194)
68 PRK00888 ftsB cell division pr 27.6 1.6E+02 0.0034 25.0 5.5 41 44-84 30-70 (105)
69 PRK14164 heat shock protein Gr 27.4 4.5E+02 0.0098 25.4 9.1 53 34-86 77-135 (218)
70 PF10146 zf-C4H2: Zinc finger- 27.2 5.1E+02 0.011 25.2 9.5 50 35-84 19-68 (230)
71 PF05377 FlaC_arch: Flagella a 27.2 2.7E+02 0.0059 21.1 5.9 31 50-80 16-46 (55)
72 PF04156 IncA: IncA protein; 27.1 2.9E+02 0.0062 25.3 7.6 34 45-78 85-118 (191)
73 PRK14068 exodeoxyribonuclease 26.9 1.4E+02 0.003 24.1 4.6 29 69-104 10-38 (76)
74 PRK00977 exodeoxyribonuclease 26.8 1.3E+02 0.0029 24.2 4.6 29 69-104 14-42 (80)
75 PF12718 Tropomyosin_1: Tropom 26.8 3.1E+02 0.0066 24.5 7.4 30 38-67 32-61 (143)
76 KOG4673 Transcription factor T 26.7 3.5E+02 0.0077 30.6 9.0 57 26-82 845-907 (961)
77 PF04977 DivIC: Septum formati 26.6 1.5E+02 0.0033 22.7 4.9 31 44-74 20-50 (80)
78 PF07889 DUF1664: Protein of u 26.4 2.4E+02 0.0052 24.9 6.5 9 6-14 24-32 (126)
79 TIGR02209 ftsL_broad cell divi 26.3 2.1E+02 0.0045 22.6 5.8 50 29-79 19-68 (85)
80 PRK14063 exodeoxyribonuclease 26.2 1.4E+02 0.0031 23.9 4.6 29 69-104 9-37 (76)
81 cd00632 Prefoldin_beta Prefold 26.1 1.6E+02 0.0035 24.6 5.2 36 38-73 67-102 (105)
82 PF14389 Lzipper-MIP1: Leucine 25.8 1.5E+02 0.0032 24.4 4.8 36 43-78 3-38 (88)
83 TIGR00293 prefoldin, archaeal 25.7 1.9E+02 0.0041 24.7 5.8 41 46-86 4-44 (126)
84 TIGR02401 trehalose_TreY malto 25.6 1.9E+02 0.0041 33.4 7.1 98 16-118 294-400 (825)
85 PF11932 DUF3450: Protein of u 25.5 2.7E+02 0.0058 26.9 7.4 51 32-82 29-83 (251)
86 PRK14069 exodeoxyribonuclease 25.0 1.5E+02 0.0032 25.0 4.7 29 69-104 12-40 (95)
87 PRK14149 heat shock protein Gr 24.9 6E+02 0.013 24.1 10.4 84 38-121 47-138 (191)
88 COG3074 Uncharacterized protei 24.9 3.2E+02 0.0069 21.8 6.2 42 38-79 8-49 (79)
89 PRK14160 heat shock protein Gr 24.9 6.3E+02 0.014 24.3 9.9 81 40-121 74-160 (211)
90 PRK03947 prefoldin subunit alp 24.9 1.3E+02 0.0029 26.3 4.8 45 38-82 91-135 (140)
91 PF13851 GAS: Growth-arrest sp 24.6 3.4E+02 0.0074 25.6 7.7 19 98-116 112-130 (201)
92 cd00584 Prefoldin_alpha Prefol 24.6 2.4E+02 0.0051 24.2 6.2 42 45-86 3-44 (129)
93 PF14567 SUKH_5: SMI1-KNR4 cel 24.6 96 0.0021 27.6 3.7 55 75-129 2-60 (132)
94 PF12958 DUF3847: Protein of u 24.5 4E+02 0.0088 22.0 8.4 71 34-108 8-78 (86)
95 PRK14145 heat shock protein Gr 24.5 6.1E+02 0.013 24.1 10.1 83 38-121 56-144 (196)
96 PRK00736 hypothetical protein; 24.4 2.8E+02 0.0061 21.6 5.9 40 42-81 6-45 (68)
97 PRK14511 maltooligosyl trehalo 24.2 2.2E+02 0.0049 33.1 7.4 98 16-118 340-446 (879)
98 cd04779 HTH_MerR-like_sg4 Heli 24.1 3.6E+02 0.0077 23.8 7.3 39 49-87 75-113 (134)
99 KOG0933 Structural maintenance 24.1 55 0.0012 38.1 2.5 36 95-131 495-530 (1174)
100 PRK04863 mukB cell division pr 24.0 4.2E+02 0.0091 32.9 10.0 58 48-105 390-447 (1486)
101 PRK02793 phi X174 lysis protei 23.8 3.3E+02 0.0072 21.5 6.3 41 41-81 8-48 (72)
102 PRK14143 heat shock protein Gr 23.7 6.6E+02 0.014 24.6 9.6 86 36-121 76-170 (238)
103 PF08349 DUF1722: Protein of u 23.6 2.6E+02 0.0056 23.9 6.2 36 76-115 73-108 (117)
104 PF06761 IcmF-related: Intrace 23.5 3.3E+02 0.0072 27.1 7.9 76 290-370 44-125 (312)
105 PF08614 ATG16: Autophagy prot 23.5 2E+02 0.0043 26.8 5.9 70 39-111 107-176 (194)
106 cd00890 Prefoldin Prefoldin is 23.5 2.8E+02 0.006 23.4 6.4 41 46-86 4-44 (129)
107 PF06160 EzrA: Septation ring 23.3 4E+02 0.0086 29.2 9.0 80 32-111 99-179 (560)
108 PF13094 CENP-Q: CENP-Q, a CEN 23.2 2.9E+02 0.0063 24.8 6.7 46 37-82 30-75 (160)
109 PRK14140 heat shock protein Gr 23.0 6.5E+02 0.014 23.8 10.8 84 38-121 48-139 (191)
110 PF13747 DUF4164: Domain of un 22.9 2.9E+02 0.0063 22.7 6.0 38 44-81 35-72 (89)
111 PF05064 Nsp1_C: Nsp1-like C-t 22.8 2.4E+02 0.0052 24.2 5.8 50 33-82 42-91 (116)
112 PF07047 OPA3: Optic atrophy 3 22.8 86 0.0019 27.7 3.1 37 38-74 95-131 (134)
113 PF06667 PspB: Phage shock pro 22.8 1.2E+02 0.0026 24.3 3.6 26 54-79 41-66 (75)
114 PF05377 FlaC_arch: Flagella a 22.4 2.8E+02 0.0061 21.0 5.3 28 51-78 3-30 (55)
115 PRK04778 septation ring format 21.7 5.1E+02 0.011 28.4 9.4 80 32-111 103-183 (569)
116 PRK14148 heat shock protein Gr 21.7 6.9E+02 0.015 23.7 10.4 86 36-121 49-142 (195)
117 smart00338 BRLZ basic region l 21.6 2.6E+02 0.0057 21.1 5.2 25 51-75 29-53 (65)
118 PRK14151 heat shock protein Gr 21.5 6.6E+02 0.014 23.3 10.2 90 32-121 25-123 (176)
119 PF12718 Tropomyosin_1: Tropom 21.2 2.9E+02 0.0062 24.7 6.1 35 42-76 22-56 (143)
120 PF13863 DUF4200: Domain of un 21.1 3.7E+02 0.0079 22.8 6.7 26 50-75 76-101 (126)
121 PF05064 Nsp1_C: Nsp1-like C-t 21.1 96 0.0021 26.7 3.0 49 34-82 50-98 (116)
122 PRK00295 hypothetical protein; 20.5 4.2E+02 0.009 20.6 6.3 39 43-81 7-45 (68)
123 KOG4831 Unnamed protein [Funct 20.5 1.6E+02 0.0036 25.4 4.1 39 120-158 12-51 (125)
124 PF08651 DASH_Duo1: DASH compl 20.3 4.6E+02 0.01 21.1 7.0 53 52-108 2-54 (78)
125 KOG3501 Molecular chaperone Pr 20.3 2.5E+02 0.0055 24.1 5.2 53 22-74 55-107 (114)
126 KOG4360 Uncharacterized coiled 20.3 5.6E+02 0.012 28.0 8.9 78 39-116 203-291 (596)
127 PRK14154 heat shock protein Gr 20.3 7.7E+02 0.017 23.6 10.1 102 34-135 59-172 (208)
128 PHA01750 hypothetical protein 20.1 1.5E+02 0.0031 23.4 3.4 22 54-75 41-62 (75)
129 PRK14066 exodeoxyribonuclease 20.1 1.6E+02 0.0034 23.6 3.8 29 69-104 8-36 (75)
130 PRK04325 hypothetical protein; 20.1 3.7E+02 0.0081 21.3 5.9 39 43-81 11-49 (74)
131 PF04065 Not3: Not1 N-terminal 20.0 5.5E+02 0.012 25.0 8.2 24 59-82 167-190 (233)
No 1
>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification]
Probab=100.00 E-value=6e-71 Score=586.38 Aligned_cols=376 Identities=37% Similarity=0.709 Sum_probs=354.0
Q ss_pred chhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHH
Q 035814 32 GTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSH 111 (422)
Q Consensus 32 ~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ 111 (422)
-+++|+++|+++|.++|++.+|+++++.++..++.++.+..++..+.+.|+.++...++..+||++|...|+.|+.+||+
T Consensus 279 ~E~~i~~~~~~lr~e~~~~~~le~~~e~~~~~~~~~~~~~~~l~~~~e~v~~~e~~~~~~~~tld~~~~~fe~L~~eY~~ 358 (767)
T KOG2184|consen 279 QESQIRRSDRQLRIERDQALNLEKEIEKLEEELDLEKTHEQSLRKVEESVDEAELDVSSKRLTLDELAILFELLRMEYPE 358 (767)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhccCCccccHHHHHHHHHHhhhhccc
Confidence 46789999999999999999999999999999999999999999999999999987777779999999999999999999
Q ss_pred HHhhcChhHHHHHHhhhHHHHhhcCCCCCCCchhhHHHHHHHHHhccCCc------cccHHHHHHHHhhHHHHHHhhccc
Q 035814 112 SYMIYHLSPVAYSLAFPLFIRTFQGWDPLQNPSYQLELVSMWRQVLDSDH------GYVYYAQLVSQAILPAVRASSISN 185 (422)
Q Consensus 112 ey~~~~L~~lav~~v~Pllr~~~~~WdPL~~P~~~l~~l~~wk~lL~~~~------~~~~y~~Li~~~~lP~lr~ai~~~ 185 (422)
+|..|+|.++|++++.|++.+.|..|+|+.+|+++++.+..||.+|.... ..++|++++|..|||++|.+..+.
T Consensus 359 ~~~~~~l~~~a~~i~~pL~~~~~~~Wdpl~d~~~g~e~i~~wk~lL~~~~~~~~~~~~~~~~~li~e~~~p~vr~~~l~~ 438 (767)
T KOG2184|consen 359 EYTLKSLSSIAVSIVLPLLKRYLKFWDPLEDPYSGLESISKWKALLEQSDDLRKRDEIDPYSSLIWEGVMPKVRKAELAT 438 (767)
T ss_pred cccccccccchhhhhhHHHHHHhhccCcccCccchhHHHHHHHhhhhhhccchhhccccccceeeeeeecHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999997652 256999999999999999944445
Q ss_pred ccCCCcchHHHHHHhhhhhchhhHHHHhhhhhhHHHHHHhhhccCCCCCCCCchhHHhcChhhhhcchHHHHHHHHHHHH
Q 035814 186 WDAKDPEPMLKFLDCWKMLLPYSLLNTILDTIVMPKMSDVVDSWDPRSETYSIHDWVHQWLPWLGRKQKGLFRMILIKLG 265 (422)
Q Consensus 186 Wdp~d~~p~l~ll~~W~plLP~~i~dnILeqlIlPKL~~aV~~W~P~~d~~pih~wl~PWlp~Lg~rl~~L~~~Ir~KL~ 265 (422)
|.|+|+.||++|+++|.++||.+|.|||++++|+|||.++|++|+|++|.+|+|.|+|||+++++.|++.+|+.||.||+
T Consensus 439 w~~~d~~~m~~lle~W~~~lp~~VldnIl~~~v~pkl~~~v~~W~p~~d~~~i~swi~pwl~il~~r~~~l~~~i~~Kls 518 (767)
T KOG2184|consen 439 WEPRDMLPMLSLLEAWVPLLPSWVLDNILDQLVLPKLSAAVSQWDPLTDTVPIHSWIHPWLPILGQRLESLYPSIRSKLS 518 (767)
T ss_pred cCccchhHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhcccccceeeecchHHHhhhHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccccCCCChhhhhhhhhhHHHH----HHHHHHhhhhHHHHHHHHhhhcCCCCcchhHHHHhhhccccccc--------
Q 035814 266 EVLDAWHPSDASAYILLSPWKNVL----WEQLMHRYIVPKLQVTVQELEINPANQKLYQFHWVMSWASAIPS-------- 333 (422)
Q Consensus 266 ~aL~~W~~~d~sa~~~L~pWk~Vf----~~~~L~k~IlPKL~~~L~~~~InP~~Q~le~~~~vl~W~~~i~~-------- 333 (422)
.+|..|+++|++++.+|+|||.|| |++|+.++|+|||+.+|.++.|||.+|+|+.|.+|+.|++++++
T Consensus 519 ~~l~~W~p~d~sa~~~l~pWK~~f~~~~~~~~~~~~ivpkl~~~l~e~~inp~~q~l~~~~~v~~w~~~i~~~~~~~l~~ 598 (767)
T KOG2184|consen 519 IALDAWHPSDRSAIAILSPWKTVFDAASWKEFMRRYIVPKLQLALDELQINPMNQDLERFTWVMEWKGLIDPHLMAQLLE 598 (767)
T ss_pred HHhhcCCCcccCchhhhccchhccchhhHHHHHhhcccccHHHHhhhhccCccccchhhhhhhhhhhcccCHHHHHHHHH
Confidence 999999999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred ----------------CCCChHHHHHHHHHHHhhchHHhhcchhHHHHHHHHHHHHHHhhcCCCCCCCCCcCCCCCCCcc
Q 035814 334 ----------------SPNDFEEIRKWYKGWKDLLPQELVANESIRAQLSIGVDMIGKAVDGVKIDPPAHSLNYSLPGMR 397 (422)
Q Consensus 334 ----------------~~pn~~EV~~WY~~WK~~fp~~l~~~~~I~~~f~~aL~mmn~a~~~~~i~~p~~~~~~~~~~~~ 397 (422)
+.|||+||..||.|||++||..+++++.|+++|++||||||+|+++..+++|.++++++. .+
T Consensus 599 ~hffpkwl~~l~~WL~n~p~~~Ei~~wy~gwK~~~~~~ll~~~~v~~~~k~~ld~~~r~~~~~~l~~p~a~d~~~~--~~ 676 (767)
T KOG2184|consen 599 RHFFPKWLNVLYHWLSNSPDYDEISRWYTGWKSMFPQELLANPYVKDKFKRGLDMMNRAVERLELGQPFAIDNIQP--SP 676 (767)
T ss_pred HhhhHHHHHHHHHHhcCCCchHHHHHHHHhHHHhccHhhhcCchhhhhhhhhHHHHHHhhcccccCCCccccccCC--CC
Confidence 689999999999999999999999999999999999999999999989999999999865 44
Q ss_pred CCCCCCCCcccc
Q 035814 398 SLKPWLFEAPQT 409 (422)
Q Consensus 398 ~~~~~~~~~~~~ 409 (422)
+.++....-.+.
T Consensus 677 ~~~~~a~~~~~~ 688 (767)
T KOG2184|consen 677 QSPNMAVAKIQL 688 (767)
T ss_pred CCCCcchhcccC
Confidence 444433333333
No 2
>PF07842 GCFC: GC-rich sequence DNA-binding factor-like protein; InterPro: IPR022783 Sequences in this group are similar to a region of a human GC-rich sequence DNA-binding factor homologue (Q9Y5B6 from SWISSPROT). This is thought to be a protein involved in transcriptional regulation due to partial homologies to a transcription repressor and histone-interacting protein []. This entry also contains tuftelin interacting protein 11 which has been identified as both a nuclear and cytoplasmic protein, and has been implicated in the secretory pathway. Sip1, a septin interacting protein [] is also a member of this family. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=2.1e-54 Score=424.35 Aligned_cols=238 Identities=39% Similarity=0.803 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHHHhhHHHHhhcChhHHHHHHhhhHHHHhhcCCCCCCCchhhHHHHHHHHHhccCC---------ccccH
Q 035814 95 LESLANDFSNLKCKVSHSYMIYHLSPVAYSLAFPLFIRTFQGWDPLQNPSYQLELVSMWRQVLDSD---------HGYVY 165 (422)
Q Consensus 95 l~~l~~~f~~L~~~y~~ey~~~~L~~lav~~v~Pllr~~~~~WdPL~~P~~~l~~l~~wk~lL~~~---------~~~~~ 165 (422)
|+++...|++++.+||+||+.|+|+.+++++++|++|..+.+||||++|+++++.+.+|+++|..+ .+.++
T Consensus 1 l~~i~~~fe~l~~~~~~ey~~~~l~~~~~~~~~P~lr~~l~~W~PL~~p~~~~~~l~~~~~lL~~~~~~~~~~~~~~~~~ 80 (276)
T PF07842_consen 1 LEPILSRFEELKEKFPEEYRDAYLSLLAPALIAPLLRLELQNWDPLEDPSYGVDELKRWRSLLENDQDSSSSSSNRNMTP 80 (276)
T ss_pred ChHHHHHHHHHHHHCHHHHHHcChHHHHHHHHHHHHHHHHhccCCccCcchHHHHHHHHHHHHhhcccccccccccccCc
Confidence 478999999999999999999999999999999999999999999999999999999999999842 12569
Q ss_pred HHHHHHHhhHHHHHHhhcccccCCCcchHHHHHHhhhhhchhhHHHHhhhhhhHHHHHHhhhccCCCCCCC-----Cchh
Q 035814 166 YAQLVSQAILPAVRASSISNWDAKDPEPMLKFLDCWKMLLPYSLLNTILDTIVMPKMSDVVDSWDPRSETY-----SIHD 240 (422)
Q Consensus 166 y~~Li~~~~lP~lr~ai~~~Wdp~d~~p~l~ll~~W~plLP~~i~dnILeqlIlPKL~~aV~~W~P~~d~~-----pih~ 240 (422)
|++|+|..|+|++|.++.++|++++++++++++++|.++||.++.++|+||+|+|||.++|++|||+++++ |+|.
T Consensus 81 ye~l~w~~~lp~~~~~~~~~w~~~~~~~~~~ll~~W~~~Lp~~~~~~ileqlVlPKL~~~V~~WdP~s~~~t~~~~~~h~ 160 (276)
T PF07842_consen 81 YESLIWEIWLPKVRSAIANEWDPRDPDPDLSLLEAWSPLLPPWILDNILEQLVLPKLQAAVEEWDPLSDSQTRNLVPLHS 160 (276)
T ss_pred HHHhhHHHHHHHHHHhhhcccCCCCCchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCcccCcccccccchHHH
Confidence 99999999999999887677999999999999999999999999999999999999999999999998887 9999
Q ss_pred HHhcChhhhh-cchHHHHHHHHHHHHHcccccCCCChhhhhhhhhhHHHH----HHHHHHhhhhHHHHHHHHhhhcCCCC
Q 035814 241 WVHQWLPWLG-RKQKGLFRMILIKLGEVLDAWHPSDASAYILLSPWKNVL----WEQLMHRYIVPKLQVTVQELEINPAN 315 (422)
Q Consensus 241 wl~PWlp~Lg-~rl~~L~~~Ir~KL~~aL~~W~~~d~sa~~~L~pWk~Vf----~~~~L~k~IlPKL~~~L~~~~InP~~ 315 (422)
|||||+|++| .+++.|++.||+||+++|++|+++ .+++.+|+|||+|| |++++.+||+|||+.+|++|+|||++
T Consensus 161 wl~pwlp~l~~~~l~~l~~~ir~kl~~~l~~W~~~-~~~~~~l~~Wk~vf~~~~~~~~~~~~i~Pkl~~~l~~~~i~p~~ 239 (276)
T PF07842_consen 161 WLFPWLPLLGSERLEPLYPAIRRKLRSALDNWHPS-RSALAMLSPWKDVFIPEEWDKLLLRHILPKLAKFLREFVINPRQ 239 (276)
T ss_pred HHhccCcccCchhHHHHHHHHHHHHHHHHHccCcc-cchhhhhhHHHHhCCHhhHHHHHHHhhchHHHHHHHhCCCChhh
Confidence 9999999999 799999999999999999999999 77899999999999 99999999999999999999999999
Q ss_pred cchhHHHHhhhccccccc
Q 035814 316 QKLYQFHWVMSWASAIPS 333 (422)
Q Consensus 316 Q~le~~~~vl~W~~~i~~ 333 (422)
|+++.|++|+.|++++++
T Consensus 240 q~l~~~~~vl~W~~~l~~ 257 (276)
T PF07842_consen 240 QDLKPLRNVLAWKDLLPP 257 (276)
T ss_pred cCHHHHHHHHHHHhhCCH
Confidence 999999999999999986
No 3
>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification]
Probab=99.68 E-value=9.1e-17 Score=172.82 Aligned_cols=201 Identities=22% Similarity=0.382 Sum_probs=173.6
Q ss_pred HHHHHHhhhHHHH-hhcCCCCCCCchhhHHHHHHHHHhccCCccccHHHHHHHHhhHHHHHHhhcccccCC-CcchHHHH
Q 035814 120 PVAYSLAFPLFIR-TFQGWDPLQNPSYQLELVSMWRQVLDSDHGYVYYAQLVSQAILPAVRASSISNWDAK-DPEPMLKF 197 (422)
Q Consensus 120 ~lav~~v~Pllr~-~~~~WdPL~~P~~~l~~l~~wk~lL~~~~~~~~y~~Li~~~~lP~lr~ai~~~Wdp~-d~~p~l~l 197 (422)
.+....+.|.+|. .+..|.| .++..++..+..|.++|... ..++++.++|+|++..+|.+ |+|+ |..|++++
T Consensus 421 ~li~e~~~p~vr~~~l~~w~~-~d~~~m~~lle~W~~~lp~~----VldnIl~~~v~pkl~~~v~~-W~p~~d~~~i~sw 494 (767)
T KOG2184|consen 421 SLIWEGVMPKVRKAELATWEP-RDMLPMLSLLEAWVPLLPSW----VLDNILDQLVLPKLSAAVSQ-WDPLTDTVPIHSW 494 (767)
T ss_pred eeeeeeecHHHHHHHHhccCc-cchhHHHhHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHhc-cchhhccccccee
Confidence 4566789999999 6778877 47889999999999999887 89999999999999999986 9995 89999999
Q ss_pred HHhhhhhchhhHHHHhhhhhhHHHHHHhhhccCCCCCCCCchhHHhcChhhhhc-chH-HHHHHHHHHHHHcccccCCCC
Q 035814 198 LDCWKMLLPYSLLNTILDTIVMPKMSDVVDSWDPRSETYSIHDWVHQWLPWLGR-KQK-GLFRMILIKLGEVLDAWHPSD 275 (422)
Q Consensus 198 l~~W~plLP~~i~dnILeqlIlPKL~~aV~~W~P~~d~~pih~wl~PWlp~Lg~-rl~-~L~~~Ir~KL~~aL~~W~~~d 275 (422)
+.+|.++|...+.. ++ +.|++||+.++..|+|.++ +++.-+-||...++. .++ .+-+.|.+||+.+|..-.+++
T Consensus 495 i~pwl~il~~r~~~-l~-~~i~~Kls~~l~~W~p~d~--sa~~~l~pWK~~f~~~~~~~~~~~~ivpkl~~~l~e~~inp 570 (767)
T KOG2184|consen 495 IHPWLPILGQRLES-LY-PSIRSKLSIALDAWHPSDR--SAIAILSPWKTVFDAASWKEFMRRYIVPKLQLALDELQINP 570 (767)
T ss_pred eecchHHHhhhHHH-hh-hHHHHHHHHHhhcCCCccc--CchhhhccchhccchhhHHHHHhhcccccHHHHhhhhccCc
Confidence 99999999999987 44 8899999999999999843 789999999999997 466 577889999999999987776
Q ss_pred hhhhhhhhhhHHHH----------HHHHHHhhhhHHHHHHHHhhhcCCCCcchhHHHHhhhccccccc
Q 035814 276 ASAYILLSPWKNVL----------WEQLMHRYIVPKLQVTVQELEINPANQKLYQFHWVMSWASAIPS 333 (422)
Q Consensus 276 ~sa~~~L~pWk~Vf----------~~~~L~k~IlPKL~~~L~~~~InP~~Q~le~~~~vl~W~~~i~~ 333 (422)
.++.+..|--|| +.+++.+|++||+..+|..+.-|+.+ -.+.-.|+..|+.++|.
T Consensus 571 --~~q~l~~~~~v~~w~~~i~~~~~~~l~~~hffpkwl~~l~~WL~n~p~-~~Ei~~wy~gwK~~~~~ 635 (767)
T KOG2184|consen 571 --MNQDLERFTWVMEWKGLIDPHLMAQLLERHFFPKWLNVLYHWLSNSPD-YDEISRWYTGWKSMFPQ 635 (767)
T ss_pred --cccchhhhhhhhhhhcccCHHHHHHHHHHhhhHHHHHHHHHHhcCCCc-hHHHHHHHHhHHHhccH
Confidence 345566555554 88999999999999999998888765 34455999999999998
No 4
>PF07842 GCFC: GC-rich sequence DNA-binding factor-like protein; InterPro: IPR022783 Sequences in this group are similar to a region of a human GC-rich sequence DNA-binding factor homologue (Q9Y5B6 from SWISSPROT). This is thought to be a protein involved in transcriptional regulation due to partial homologies to a transcription repressor and histone-interacting protein []. This entry also contains tuftelin interacting protein 11 which has been identified as both a nuclear and cytoplasmic protein, and has been implicated in the secretory pathway. Sip1, a septin interacting protein [] is also a member of this family. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.67 E-value=5e-16 Score=152.70 Aligned_cols=178 Identities=25% Similarity=0.452 Sum_probs=150.8
Q ss_pred ChhHHHHHHhhhHHHHhh-cCCCCCCCchhhHHHHHHHHHhccCCccccHHHHHHHHhhHHHHHHhhcccccCC-Ccc--
Q 035814 117 HLSPVAYSLAFPLFIRTF-QGWDPLQNPSYQLELVSMWRQVLDSDHGYVYYAQLVSQAILPAVRASSISNWDAK-DPE-- 192 (422)
Q Consensus 117 ~L~~lav~~v~Pllr~~~-~~WdPL~~P~~~l~~l~~wk~lL~~~~~~~~y~~Li~~~~lP~lr~ai~~~Wdp~-d~~-- 192 (422)
....+.+..+.|.++..+ .+|++. +|...++.+..|+++|+.. .+++++.++|+|++..+|.+ |||+ +..
T Consensus 80 ~ye~l~w~~~lp~~~~~~~~~w~~~-~~~~~~~ll~~W~~~Lp~~----~~~~ileqlVlPKL~~~V~~-WdP~s~~~t~ 153 (276)
T PF07842_consen 80 PYESLIWEIWLPKVRSAIANEWDPR-DPDPDLSLLEAWSPLLPPW----ILDNILEQLVLPKLQAAVEE-WDPLSDSQTR 153 (276)
T ss_pred cHHHhhHHHHHHHHHHhhhcccCCC-CCchHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHh-CcccCccccc
Confidence 456788999999999554 799997 7899999999999999875 89999999999999999997 9995 666
Q ss_pred ---hHHHHHHhhhhhchhhHHHHhhhhhhHHHHHHhhhccCCCCCCCCchhHHhcChhhhhc-chHH-HHHHHHHHHHHc
Q 035814 193 ---PMLKFLDCWKMLLPYSLLNTILDTIVMPKMSDVVDSWDPRSETYSIHDWVHQWLPWLGR-KQKG-LFRMILIKLGEV 267 (422)
Q Consensus 193 ---p~l~ll~~W~plLP~~i~dnILeqlIlPKL~~aV~~W~P~~d~~pih~wl~PWlp~Lg~-rl~~-L~~~Ir~KL~~a 267 (422)
|+++++..|.|+++..-++.++ ..|.-||+.++++|+|. + ++..-|.||-++++. .++. +...|.+|++.+
T Consensus 154 ~~~~~h~wl~pwlp~l~~~~l~~l~-~~ir~kl~~~l~~W~~~-~--~~~~~l~~Wk~vf~~~~~~~~~~~~i~Pkl~~~ 229 (276)
T PF07842_consen 154 NLVPLHSWLFPWLPLLGSERLEPLY-PAIRRKLRSALDNWHPS-R--SALAMLSPWKDVFIPEEWDKLLLRHILPKLAKF 229 (276)
T ss_pred ccchHHHHHhccCcccCchhHHHHH-HHHHHHHHHHHHccCcc-c--chhhhhhHHHHhCCHhhHHHHHHHhhchHHHHH
Confidence 8999999999999944455566 67999999999999997 3 688999999999998 6775 777999999999
Q ss_pred ccccCCCChhhhhhhhhhHHHH----------HHHHHHhhhhHHHHHHH
Q 035814 268 LDAWHPSDASAYILLSPWKNVL----------WEQLMHRYIVPKLQVTV 306 (422)
Q Consensus 268 L~~W~~~d~sa~~~L~pWk~Vf----------~~~~L~k~IlPKL~~~L 306 (422)
|++..+++.. +.+.+++.|+ +.+++.++|+||+..+|
T Consensus 230 l~~~~i~p~~--q~l~~~~~vl~W~~~l~~~~l~~ll~~~ffpkwl~~L 276 (276)
T PF07842_consen 230 LREFVINPRQ--QDLKPLRNVLAWKDLLPPSVLVQLLEDEFFPKWLQVL 276 (276)
T ss_pred HHhCCCChhh--cCHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhC
Confidence 9987776532 3455555544 88889999999998875
No 5
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.43 E-value=10 Score=33.22 Aligned_cols=65 Identities=6% Similarity=0.089 Sum_probs=50.7
Q ss_pred ccchhhhhcccchhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035814 21 AGVTGLAMLKNGTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQ 85 (422)
Q Consensus 21 ~~~~~~~~~~~~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~ 85 (422)
+|..+..++..=.-.|.+.+.++..-++++..|+.+++.+..++-+.-.+.+.+......+..++
T Consensus 10 ~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~ 74 (120)
T PF12325_consen 10 SGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELE 74 (120)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667888999999999999999999999999998888777777766665555554
No 6
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=75.41 E-value=17 Score=30.82 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHHHHh
Q 035814 68 KQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSHSYM 114 (422)
Q Consensus 68 ~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ey~ 114 (422)
...|.+|..+.+.+..+-. +..+|..+-...+..|...||.|+.
T Consensus 57 ~~vi~~L~~a~~~l~~I~~---n~~lT~~q~~~~I~~l~~~~~~e~~ 100 (113)
T PF02520_consen 57 TAVISNLSSAFAKLSAILD---NKSLTRQQQQEAIDALRKQYPEEVD 100 (113)
T ss_pred HHHHHHHHHHHHHHHHHHc---CcccCHHHHHHHHHHHHHHCCHHHH
Confidence 3446677777766666654 3578999999999999999999865
No 7
>PRK14139 heat shock protein GrpE; Provisional
Probab=73.49 E-value=25 Score=33.01 Aligned_cols=89 Identities=9% Similarity=0.083 Sum_probs=60.8
Q ss_pred hhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHH
Q 035814 33 TKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNSLGTLTLESLANDFSNLK 106 (422)
Q Consensus 33 ~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~ 106 (422)
+.+|-....++..-+|+...+.-|-+.+++..+++++.+.+ +.+++..++.|..-....+..++.+..-++-..
T Consensus 38 ~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~~~~l~~Gv~mi~ 117 (185)
T PRK14139 38 EAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADESGDLEKLREGVELTL 117 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccchHHHHHHHHHHHH
Confidence 34455666777777888888888888888888888777553 356777777775432222234566677777777
Q ss_pred HhhHHHHhhcChhHH
Q 035814 107 CKVSHSYMIYHLSPV 121 (422)
Q Consensus 107 ~~y~~ey~~~~L~~l 121 (422)
.+|-.-+..+|+..+
T Consensus 118 k~l~~vL~k~Gv~~I 132 (185)
T PRK14139 118 KQLTSAFEKGRVVEI 132 (185)
T ss_pred HHHHHHHHHCCCcee
Confidence 777777777887765
No 8
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=63.58 E-value=5.8 Score=33.32 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=30.4
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQ 69 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~ 69 (422)
.+|+..|.+.|...-+...|.+++..+.+++.....
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 578889999999999999999999998888876654
No 9
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=63.24 E-value=44 Score=33.25 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=42.9
Q ss_pred ccchhhHh-hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035814 30 KNGTKAQL-AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQ 85 (422)
Q Consensus 30 ~~~~~~i~-~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~ 85 (422)
..+-+++| ....++...++.+.+++.+...|...+++-+.+++|.+.=++.+.+++
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vR 220 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVR 220 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33334444 667788888888888888888888888888888888888777777665
No 10
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=57.06 E-value=26 Score=27.25 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=19.9
Q ss_pred hhcccchhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHH
Q 035814 27 AMLKNGTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRA 65 (422)
Q Consensus 27 ~~~~~~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~ 65 (422)
.....|-..+.+.++++...+.++..++.+.+++..+++
T Consensus 10 ~~~~~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 10 VFGISGYSRYYQLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666665555555554444444444444433
No 11
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=55.35 E-value=2.7e+02 Score=30.89 Aligned_cols=223 Identities=15% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHHHHhhcChhHHHHHHhhhHHH
Q 035814 54 QRNKDKFDKMRAAEKQKFDDA--ETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSHSYMIYHLSPVAYSLAFPLFI 131 (422)
Q Consensus 54 ~~e~~~l~~~~~~~~~~i~~l--~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ey~~~~L~~lav~~v~Pllr 131 (422)
+.|.+.|+..+...+..-..- ..+.++|+++-.. .-+++...+++|+.. +.....-.
T Consensus 294 qsev~el~~~l~~a~~~~~~~~~~~l~~Ll~klP~g------~g~~~~~~~~~l~~~---------------s~~~~~~n 352 (606)
T PF07217_consen 294 QSEVQELEGALNNAESSSSSSSLSALRSLLSKLPGG------GGDDLARKADELQAN---------------SEAQQQEN 352 (606)
T ss_pred hhhHHHHHHHHHHHhcccCCCCHHHHHHHHHhCCCc------ccchhHHHHHHHHHH---------------HHHHHhhc
Q ss_pred Hh-------hcCCCCCCCchhhHHHHHHHHHhccCCccccHHHHHHHHhhHHHHHHhhcccccCCCcchHH-HHHHhhhh
Q 035814 132 RT-------FQGWDPLQNPSYQLELVSMWRQVLDSDHGYVYYAQLVSQAILPAVRASSISNWDAKDPEPML-KFLDCWKM 203 (422)
Q Consensus 132 ~~-------~~~WdPL~~P~~~l~~l~~wk~lL~~~~~~~~y~~Li~~~~lP~lr~ai~~~Wdp~d~~p~l-~ll~~W~p 203 (422)
.. .+.=+|-.+|. ++..+.-++|.. .+-|+..|..++.. .|.+ ++++.-..
T Consensus 353 ~~~~~~~~~~~~~~p~~~~~---~v~~qI~PiLef-----------rD~i~k~I~~~Iek-------IPgL~~l~e~i~e 411 (606)
T PF07217_consen 353 QRSGGNDNVVSPMSPEEDPQ---EVHQQIYPILEF-----------RDRIMKSISEAIEK-------IPGLESLIEKISE 411 (606)
T ss_pred cccccccCCCCCCCcccCHH---HHHHHHHHHHHH-----------HHHHHHHHHHHHhc-------CCCcHHHHHHHHH
Q ss_pred hchhhHHHHhhhhhhHHHHHHhhhccCCCCCCCCchhHHhcChhhhhcchHHHHHHHHHHHHHcccccCCCChhhhhhhh
Q 035814 204 LLPYSLLNTILDTIVMPKMSDVVDSWDPRSETYSIHDWVHQWLPWLGRKQKGLFRMILIKLGEVLDAWHPSDASAYILLS 283 (422)
Q Consensus 204 lLP~~i~dnILeqlIlPKL~~aV~~W~P~~d~~pih~wl~PWlp~Lg~rl~~L~~~Ir~KL~~aL~~W~~~d~sa~~~L~ 283 (422)
-|..|++. +|..+|+|-|..+ .. .|..--.++...-+..--....+=+.+|.+ .++|+
T Consensus 412 ~l~~fVfs-~laPfi~Pii~q~--------~~------------~L~~gSs~Vi~ss~~~Q~evf~d~~~sDPT-HSmLS 469 (606)
T PF07217_consen 412 QLTVFVFS-LLAPFIRPIIKQV--------SS------------ELKTGSSEVIDSSADDQYEVFNDPNCSDPT-HSMLS 469 (606)
T ss_pred HHHHHHHH-HHHHHHHHHHHHH--------HH------------HHHhhhHHHHHhhhhcccccccCCCCCCCc-hhhhh
Q ss_pred hhHHHH----------HHHHHHhhhhHHHHHHHHhhhcCCCCcchhHHHHhhhccccccc--------CCCChHHHHHHH
Q 035814 284 PWKNVL----------WEQLMHRYIVPKLQVTVQELEINPANQKLYQFHWVMSWASAIPS--------SPNDFEEIRKWY 345 (422)
Q Consensus 284 pWk~Vf----------~~~~L~k~IlPKL~~~L~~~~InP~~Q~le~~~~vl~W~~~i~~--------~~pn~~EV~~WY 345 (422)
|+.| ..+.+.++++|++..|-.+-.||| ++.++.+-.|+ .=|. ..--|+.|.+|.
T Consensus 470 --KDHFsNILNepAG~vA~~iv~~vVp~vv~AWdd~~vdv-~~vl~~il~vf----HHPa~rd~~~eiqr~Mf~~V~~W~ 542 (606)
T PF07217_consen 470 --KDHFSNILNEPAGRVASAIVKWVVPRVVYAWDDPSVDV-DRVLNDILRVF----HHPAFRDMNSEIQREMFETVEEWW 542 (606)
T ss_pred --hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHc----CCcccCCchhHHHHHHHHHHHHHH
Q ss_pred HH
Q 035814 346 KG 347 (422)
Q Consensus 346 ~~ 347 (422)
..
T Consensus 543 ~~ 544 (606)
T PF07217_consen 543 NE 544 (606)
T ss_pred Hh
No 12
>PLN02678 seryl-tRNA synthetase
Probab=53.43 E-value=16 Score=38.98 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=25.9
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAA 66 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~ 66 (422)
.+|++.|++.|....++..|++++.++.+++..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888877765
No 13
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=51.39 E-value=51 Score=31.85 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=55.1
Q ss_pred chhhhhcccchhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHH---
Q 035814 23 VTGLAMLKNGTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLA--- 99 (422)
Q Consensus 23 ~~~~~~~~~~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~--- 99 (422)
+.+..-+.|++..++..+. -++.=....|+.|+.+|..+++..++.+.+|..+... +.. ++.-.|+.++
T Consensus 108 ~~~~~~~~ns~~~k~~~~g--~~~~~~~~el~~ek~kL~~q~~e~~e~lr~L~~~k~~----r~K--n~~~~Lq~lI~Kw 179 (221)
T PF10376_consen 108 QAASSYLLNSSSPKIQKMG--GYEELKQQELEEEKRKLEKQVDEKEEELRRLKLVKQY----RSK--NDLEQLQSLIKKW 179 (221)
T ss_pred hhhchhhhhhhhhcccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----Hhh--ccHHHHHHHHHHH
Confidence 4467778888888776554 3333345578888888888888887777766554332 110 0111333333
Q ss_pred -----HHHHHHHHhhHH-HHhhcChhHHH
Q 035814 100 -----NDFSNLKCKVSH-SYMIYHLSPVA 122 (422)
Q Consensus 100 -----~~f~~L~~~y~~-ey~~~~L~~la 122 (422)
..+.+|+...++ +=..|.|.+++
T Consensus 180 r~~~q~~l~eL~~~~~~~e~~~~TM~eL~ 208 (221)
T PF10376_consen 180 RSASQEALYELQSEMSEEEGEKFTMGELI 208 (221)
T ss_pred HHHHHHHHHHHHHHHhhccccCccHHHHH
Confidence 456677776666 44455555554
No 14
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=51.06 E-value=1.4e+02 Score=27.40 Aligned_cols=67 Identities=9% Similarity=0.070 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------------CCCCCHHHHHHHHHHHHHhhHHHH
Q 035814 48 ETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNS--------------LGTLTLESLANDFSNLKCKVSHSY 113 (422)
Q Consensus 48 d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~--------------~~~~tl~~l~~~f~~L~~~y~~ey 113 (422)
-+..+++....+|.+.++.-.+-.+.++.....+.++-++.. ....|+.++.+-+..+..-|.++|
T Consensus 64 Kq~~ale~vl~~L~e~l~~l~~v~~~l~~~~~~~~~l~~~~~~~~~l~~~~~~~r~~~~PSlAdmLewl~di~r~y~~~y 143 (168)
T PF15011_consen 64 KQLEALETVLAKLRETLEELQKVRDSLSRQVRDVFQLYEQHAGLDELSLKALQQRSGVCPSLADMLEWLQDIERMYRSEY 143 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345577777777777777777777777766666666544211 235678888888888888888887
Q ss_pred h
Q 035814 114 M 114 (422)
Q Consensus 114 ~ 114 (422)
.
T Consensus 144 l 144 (168)
T PF15011_consen 144 L 144 (168)
T ss_pred H
Confidence 4
No 15
>PRK14155 heat shock protein GrpE; Provisional
Probab=51.01 E-value=1.2e+02 Score=29.04 Aligned_cols=106 Identities=8% Similarity=0.065 Sum_probs=70.5
Q ss_pred ccchhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcCCC-----CCCHHHH
Q 035814 30 KNGTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNSLG-----TLTLESL 98 (422)
Q Consensus 30 ~~~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~~~-----~~tl~~l 98 (422)
...+++|-....++..-+|+...+.-|.+.+++..+++.+.+.. +.+++..++.|..-.... ...+..+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~i 95 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDSADPAVKNF 95 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccccccchHHHHH
Confidence 34556666777788888888888888999998888888776543 356777777775421111 1124566
Q ss_pred HHHHHHHHHhhHHHHhhcChhHHHH---HHhhhHHHHhhc
Q 035814 99 ANDFSNLKCKVSHSYMIYHLSPVAY---SLAFPLFIRTFQ 135 (422)
Q Consensus 99 ~~~f~~L~~~y~~ey~~~~L~~lav---~~v~Pllr~~~~ 135 (422)
..-++-+..+|-.-+..+|+..+-. .-.=|-+.+.+.
T Consensus 96 ~~Gvemi~k~~~~~L~k~GV~~I~~~~G~~FDP~~HEAv~ 135 (208)
T PRK14155 96 IIGVEMTEKELLGAFERNGLKKIDPAKGDKFDPHLHQAMM 135 (208)
T ss_pred HHHHHHHHHHHHHHHHHCCCceecCCCCCCCChhHhceee
Confidence 6677777777777788888887632 244455666554
No 16
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=50.08 E-value=95 Score=27.47 Aligned_cols=84 Identities=8% Similarity=0.073 Sum_probs=46.7
Q ss_pred hhcccchhhHhhch----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhh---
Q 035814 27 AMLKNGTKAQLAGN----DGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDA-------------ETVLNTLDQIQK--- 86 (422)
Q Consensus 27 ~~~~~~~~~i~~~d----~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l-------------~~i~~~i~~~~~--- 86 (422)
.++.++.+++-..+ .++...|+++..+-.+...+..+......+.+.+ ...+...+.-++
T Consensus 37 ~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~la 116 (150)
T PF07200_consen 37 EELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEESEELA 116 (150)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444 6666666666666666666665555444443332 222222222221
Q ss_pred -hcCCCCCCHHHHHHHHHHHHHhhH
Q 035814 87 -KNSLGTLTLESLANDFSNLKCKVS 110 (422)
Q Consensus 87 -~~~~~~~tl~~l~~~f~~L~~~y~ 110 (422)
..-+|.++++.|...|...+..|-
T Consensus 117 e~fl~g~~d~~~Fl~~f~~~R~~yH 141 (150)
T PF07200_consen 117 EEFLDGEIDVDDFLKQFKEKRKLYH 141 (150)
T ss_dssp -S-SSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 122567788889888888888874
No 17
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=49.43 E-value=20 Score=37.78 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=28.5
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAE 67 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~ 67 (422)
.+|+..|++.|....+...|+.++.++.+++...
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~ 63 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKA 63 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888888888888888888663
No 18
>PRK14147 heat shock protein GrpE; Provisional
Probab=48.15 E-value=1.7e+02 Score=27.03 Aligned_cols=87 Identities=9% Similarity=-0.002 Sum_probs=51.3
Q ss_pred hHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHh
Q 035814 35 AQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCK 108 (422)
Q Consensus 35 ~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~ 108 (422)
+|-....++...+|+...+.-|-+.+++..+++.+.+.+ +.+++..++.|........-....+..-++-...+
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~~~~l~~Gv~mi~k~ 105 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAGTEPSPLRDGLELTYKQ 105 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 344555666666777777777777777777777666443 35566666666543211111234455555556666
Q ss_pred hHHHHhhcChhHH
Q 035814 109 VSHSYMIYHLSPV 121 (422)
Q Consensus 109 y~~ey~~~~L~~l 121 (422)
+-.-+..+|+..+
T Consensus 106 l~~~L~~~Gv~~i 118 (172)
T PRK14147 106 LLKVAADNGLTLL 118 (172)
T ss_pred HHHHHHHCCCEEe
Confidence 6666666666654
No 19
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.97 E-value=1.1e+02 Score=33.76 Aligned_cols=82 Identities=9% Similarity=0.077 Sum_probs=51.9
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHHHH
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSHSY 113 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ey 113 (422)
.+|.+..+.++....++..|++|.+.|...++..++.|..|++=++.+..=.....-...-+........+|..+..+++
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888888888888777766654443332111111112234556666777777777766
Q ss_pred hh
Q 035814 114 MI 115 (422)
Q Consensus 114 ~~ 115 (422)
+.
T Consensus 495 ~~ 496 (652)
T COG2433 495 KR 496 (652)
T ss_pred HH
Confidence 53
No 20
>PRK14156 heat shock protein GrpE; Provisional
Probab=42.57 E-value=2.1e+02 Score=26.78 Aligned_cols=90 Identities=10% Similarity=0.154 Sum_probs=59.3
Q ss_pred chhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHH
Q 035814 32 GTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNSLGTLTLESLANDFSNL 105 (422)
Q Consensus 32 ~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L 105 (422)
...+|-....++..-+|+...+.-|-+.+++..+++.+.+.+ +.+++..++.|........ ..+.+..-++-.
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~-~~~~l~~Gv~mi 110 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVEG-LTDDVKKGLEMV 110 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCcc-cchhHHHHHHHH
Confidence 345555677777778888888888888888888877766443 4567777777754321111 124456667777
Q ss_pred HHhhHHHHhhcChhHHH
Q 035814 106 KCKVSHSYMIYHLSPVA 122 (422)
Q Consensus 106 ~~~y~~ey~~~~L~~la 122 (422)
..+|-.-+..+|+..+-
T Consensus 111 ~k~l~~~L~~~GV~~i~ 127 (177)
T PRK14156 111 QESLIQALKEEGVEEVA 127 (177)
T ss_pred HHHHHHHHHHCCCeecC
Confidence 77777777777877653
No 21
>PRK14158 heat shock protein GrpE; Provisional
Probab=42.20 E-value=2.5e+02 Score=26.57 Aligned_cols=97 Identities=8% Similarity=0.135 Sum_probs=57.8
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcC-CCCCCHHHHHHHHHHHHHhhHH
Q 035814 39 GNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNS-LGTLTLESLANDFSNLKCKVSH 111 (422)
Q Consensus 39 ~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~-~~~~tl~~l~~~f~~L~~~y~~ 111 (422)
...++...+|+...+.-|-+.+++..+++.+.+.+ +.+++..++.|..... ...-.++.+..-++.+...|-.
T Consensus 52 le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~i~~Gv~mi~k~l~~ 131 (194)
T PRK14158 52 KEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADEESMSAIIEGIRMTLSMLLS 131 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCcchHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666677776666665443 3567777777754311 1122356677777777777777
Q ss_pred HHhhcChhHHHH---HHhhhHHHHhhc
Q 035814 112 SYMIYHLSPVAY---SLAFPLFIRTFQ 135 (422)
Q Consensus 112 ey~~~~L~~lav---~~v~Pllr~~~~ 135 (422)
-+..||+..+-. .-.=|-+.+.+.
T Consensus 132 vLek~Gv~~I~~~~G~~FDP~~HEAv~ 158 (194)
T PRK14158 132 TLKKFGVTPVEAEKGTPFDPAYHQAMC 158 (194)
T ss_pred HHHHCCCEEecCCCCCCCChHHhhhhe
Confidence 788888877642 234455555554
No 22
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.44 E-value=1.2e+02 Score=23.64 Aligned_cols=43 Identities=7% Similarity=0.123 Sum_probs=29.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 41 DGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQ 83 (422)
Q Consensus 41 ~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~ 83 (422)
.++-.-.-+++-++.-.++|++.+..+.++|++|+.-+..+..
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666777788888888888888888776666553
No 23
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=40.73 E-value=33 Score=36.24 Aligned_cols=72 Identities=17% Similarity=0.294 Sum_probs=43.0
Q ss_pred hhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHH
Q 035814 33 TKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSH 111 (422)
Q Consensus 33 ~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ 111 (422)
-.+|+..|++.|....++..|++++.++.+++....+.-+..+.+.+.+..+.+ .+..+.+.+..+..+.-+
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~-------~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKE-------EIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888888888886522221223334444443333 234444455555555443
No 24
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=40.18 E-value=1.9e+02 Score=25.88 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=37.9
Q ss_pred hHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhcCC--CCCCHHHHHHHHHHHH
Q 035814 35 AQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFD------DAETVLNTLDQIQKKNSL--GTLTLESLANDFSNLK 106 (422)
Q Consensus 35 ~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~------~l~~i~~~i~~~~~~~~~--~~~tl~~l~~~f~~L~ 106 (422)
+|-....++..-+++...+..+.+.+.+...++..... -+.+++..++.|..-... .....+.+...|..+.
T Consensus 19 ~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~~~~g~~~~~ 98 (165)
T PF01025_consen 19 ELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAKSNEEEESLLEGLEMIL 98 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-SHHCTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 33444445555555555555555555555554433322 134444555544432111 1112234444444444
Q ss_pred HhhHHHHhhcChhH
Q 035814 107 CKVSHSYMIYHLSP 120 (422)
Q Consensus 107 ~~y~~ey~~~~L~~ 120 (422)
..+-+-...+|+..
T Consensus 99 ~~l~~~L~~~Gv~~ 112 (165)
T PF01025_consen 99 KQLEDILEKNGVEE 112 (165)
T ss_dssp HHHHHHHHTTTEEE
T ss_pred HHHHHHHHHCCCEe
Confidence 44444444444443
No 25
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=39.92 E-value=2.2e+02 Score=23.71 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHHHHhh
Q 035814 51 FCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSHSYMI 115 (422)
Q Consensus 51 ~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ey~~ 115 (422)
+.+.+-+.+|..++...+++|..-+.=+.+++.+.+=- ....|.+++...++.++..|-+--..
T Consensus 8 Vr~~RrKNKl~REi~Dn~kKIRDNqKRV~LLdNL~~YI-~~~Ms~edi~~II~nMr~DYEdRVDD 71 (95)
T PF04363_consen 8 VRMYRRKNKLKREIEDNEKKIRDNQKRVLLLDNLSDYI-KPDMSIEDIRAIIENMRSDYEDRVDD 71 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHhHHHHhHHH
Confidence 34455566666666666666665555555566655421 24569999999999999999874443
No 26
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=39.82 E-value=1.9e+02 Score=25.61 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=37.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHHHHhh
Q 035814 41 DGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSHSYMI 115 (422)
Q Consensus 41 ~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ey~~ 115 (422)
++++.-.-..+.+-....+-++..++..+++++++++-..|.+++. .|+++....++|=.--|++.+.
T Consensus 56 ~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~-------lL~~~v~~ie~LN~~LP~~~RL 123 (131)
T PF10158_consen 56 KRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQS-------LLNQTVPSIETLNEILPEEERL 123 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhCChhhcC
Confidence 3333333333444444444444444444455555555555555553 5777788888888777776543
No 27
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.80 E-value=69 Score=32.86 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=29.9
Q ss_pred HHHHhhHHHHhhcChhHHHHHHhhhHHHHhhcCCC
Q 035814 104 NLKCKVSHSYMIYHLSPVAYSLAFPLFIRTFQGWD 138 (422)
Q Consensus 104 ~L~~~y~~ey~~~~L~~lav~~v~Pllr~~~~~Wd 138 (422)
+-+-+|.|||+.|.+.-.++.++.|..-..+-.|.
T Consensus 114 ~~kf~yKdEYEkFKl~~tii~l~~~~~~~~~~~~r 148 (330)
T PF07851_consen 114 QAKFKYKDEYEKFKLYLTIILLLFAVALLFLLNYR 148 (330)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHcChH
Confidence 56778999999999999999999999777777663
No 28
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.75 E-value=1.6e+02 Score=26.63 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHh
Q 035814 47 KETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCK 108 (422)
Q Consensus 47 ~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~ 108 (422)
.+....+..+..++.+++...+.+++.++.-+..+. ..+|.+++...+..|..+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~--------~~~t~~el~~~i~~l~~e 124 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLS--------SEPTNEELREEIEELEEE 124 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHH
Confidence 445566666677777777666666666655444432 355777777777777766
No 29
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=39.48 E-value=1.1e+02 Score=28.51 Aligned_cols=30 Identities=7% Similarity=0.200 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035814 58 DKFDKMRAAEKQKFDDAETVLNTLDQIQKK 87 (422)
Q Consensus 58 ~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~ 87 (422)
.+|+.+++..+++|++|+++......+++.
T Consensus 123 ~eL~~eI~~L~~~i~~le~~~~~~k~LrnK 152 (171)
T PF04799_consen 123 NELEDEIKQLEKEIQRLEEIQSKSKTLRNK 152 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566667777777777777777654
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.93 E-value=1.8e+02 Score=27.83 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHhhHHHHhhcChhHHHHHHhhhHH
Q 035814 94 TLESLANDFSNLKCKVSHSYMIYHLSPVAYSLAFPLF 130 (422)
Q Consensus 94 tl~~l~~~f~~L~~~y~~ey~~~~L~~lav~~v~Pll 130 (422)
.++.+.....+++.+---+|-+||=.-+.++++.-+|
T Consensus 154 ~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGli 190 (206)
T PRK10884 154 KVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLL 190 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 3455566667777766667777886665555544444
No 31
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.73 E-value=73 Score=33.86 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=56.3
Q ss_pred hhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHH
Q 035814 33 TKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQK-FDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSH 111 (422)
Q Consensus 33 ~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~-i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ 111 (422)
...|+..|.+.|...-+...|++++..+.+++.+...+ .+....+++.++.+.++....+..++++...+.++...+|+
T Consensus 28 ~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipN 107 (429)
T COG0172 28 VDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPN 107 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCC
Confidence 45788899999999999999999999999988743222 22345566666666655434455677788888777777775
No 32
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=38.34 E-value=75 Score=26.96 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035814 58 DKFDKMRAAEKQKFDDAETVL 78 (422)
Q Consensus 58 ~~l~~~~~~~~~~i~~l~~i~ 78 (422)
+++.++.+.++++|+++++-+
T Consensus 79 ~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 79 EKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333334444666666666543
No 33
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=37.74 E-value=2.3e+02 Score=28.36 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=34.4
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQ 85 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~ 85 (422)
.+-.+++..+++..+...+...|...+++-+.++++...=++++..|+
T Consensus 116 ~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiR 163 (338)
T KOG3647|consen 116 AIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIR 163 (338)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344566777777777777777777777777777777777777776665
No 34
>PLN02320 seryl-tRNA synthetase
Probab=37.65 E-value=37 Score=36.76 Aligned_cols=34 Identities=6% Similarity=-0.032 Sum_probs=25.3
Q ss_pred hhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035814 33 TKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAA 66 (422)
Q Consensus 33 ~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~ 66 (422)
-.+|+..|.+.|....+...|+.|+..+.+++..
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667777877777777777777777777777754
No 35
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=37.46 E-value=1.5e+02 Score=28.77 Aligned_cols=40 Identities=8% Similarity=-0.001 Sum_probs=19.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 41 DGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNT 80 (422)
Q Consensus 41 ~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~ 80 (422)
+-|..-+.....|..|+....+++..-...|+.|+.++.-
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq 71 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555555555555555555443
No 36
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.11 E-value=1.5e+02 Score=27.77 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=44.3
Q ss_pred hhccchhhhhcccchhhHhhchhhhhhhh------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 19 ACAGVTGLAMLKNGTKAQLAGNDGSRIKK------------ETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQ 83 (422)
Q Consensus 19 ~~~~~~~~~~~~~~~~~i~~~d~~~r~e~------------d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~ 83 (422)
+| |++|.. +|.--|+.+. |+.++.|| +....++...+++.++++..+.++..++.-++....
T Consensus 24 ~~-gI~~~~-VKdvlq~LvD-DglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 24 EK-GIVSMS-VKDVLQSLVD-DGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred cc-CCchhh-HHHHHHHHhc-cccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45 887743 4666666666 88777765 566678888888888888888888777776666543
No 37
>PRK14141 heat shock protein GrpE; Provisional
Probab=36.82 E-value=3.2e+02 Score=26.23 Aligned_cols=88 Identities=10% Similarity=0.069 Sum_probs=56.6
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcCC--------CCCCHHHHH
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNSL--------GTLTLESLA 99 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~~--------~~~tl~~l~ 99 (422)
+.|-....++..-+|+...+..|.+.+++..+++.+.+.. +.+++..++.|..-... ....+..+.
T Consensus 38 ~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~~~l~ 117 (209)
T PRK14141 38 DPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAEARAAADAGLKALI 117 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccccccccchhHHHHH
Confidence 3455667777777888888888888888888877766543 35566666666532110 112355666
Q ss_pred HHHHHHHHhhHHHHhhcChhHH
Q 035814 100 NDFSNLKCKVSHSYMIYHLSPV 121 (422)
Q Consensus 100 ~~f~~L~~~y~~ey~~~~L~~l 121 (422)
.-++-...++-.-+..||+..+
T Consensus 118 eGv~mi~k~l~~vLek~GV~~I 139 (209)
T PRK14141 118 EGVEMTERAMLNALERHGVKKL 139 (209)
T ss_pred HHHHHHHHHHHHHHHHCCCEEE
Confidence 6666666676666777777654
No 38
>PRK14162 heat shock protein GrpE; Provisional
Probab=36.72 E-value=3.5e+02 Score=25.66 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=57.1
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcC--CCCCCHHHHHHHHHHH
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNS--LGTLTLESLANDFSNL 105 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~--~~~~tl~~l~~~f~~L 105 (422)
.+|-....++...+|+...+.-|-+.+++..+++...+.+ +.+++..++.|..... ...-.+..+..-++..
T Consensus 46 ~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~l~~Gvemi 125 (194)
T PRK14162 46 KEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKADDEAAKQLKKGVQMT 125 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHH
Confidence 3455556666677778778888888888888777666543 3567777777754211 1122345666777777
Q ss_pred HHhhHHHHhhcChhHH
Q 035814 106 KCKVSHSYMIYHLSPV 121 (422)
Q Consensus 106 ~~~y~~ey~~~~L~~l 121 (422)
...|-.-+..+|+..+
T Consensus 126 ~k~l~~vL~~~GV~~I 141 (194)
T PRK14162 126 LDHLVKALKDHGVTEI 141 (194)
T ss_pred HHHHHHHHHHCCCEEe
Confidence 7777777777777655
No 39
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.13 E-value=1.4e+02 Score=33.12 Aligned_cols=76 Identities=9% Similarity=0.085 Sum_probs=35.4
Q ss_pred hHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhhhcCCCCCCHHHHHH
Q 035814 35 AQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDA--------------ETVLNTLDQIQKKNSLGTLTLESLAN 100 (422)
Q Consensus 35 ~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l--------------~~i~~~i~~~~~~~~~~~~tl~~l~~ 100 (422)
+|....+++..-+..+..|+.+.++++.+++..+.+++++ +..-+.|+.++.......-..++|..
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445544444444444444443333 23333444443322222335666666
Q ss_pred HHHHHHHhhH
Q 035814 101 DFSNLKCKVS 110 (422)
Q Consensus 101 ~f~~L~~~y~ 110 (422)
.|.+++.-+.
T Consensus 503 ~l~~l~k~~~ 512 (652)
T COG2433 503 KLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHh
Confidence 6666665544
No 40
>PRK02119 hypothetical protein; Provisional
Probab=35.97 E-value=1.4e+02 Score=23.75 Aligned_cols=46 Identities=7% Similarity=-0.014 Sum_probs=30.2
Q ss_pred HhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 36 QLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTL 81 (422)
Q Consensus 36 i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i 81 (422)
|-..+.++-.-+-++.-.+.-.+.|++.+..+.+.|++|+.-+..+
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666777777777777777777776655544
No 41
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=35.81 E-value=87 Score=23.01 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHH
Q 035814 70 KFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLK 106 (422)
Q Consensus 70 ~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~ 106 (422)
.+++|++|++.++ ++.+||++....|++=.
T Consensus 4 ~~~~Le~Iv~~Le-------~~~~sLdes~~lyeeg~ 33 (53)
T PF02609_consen 4 AMERLEEIVEKLE-------SGELSLDESLKLYEEGM 33 (53)
T ss_dssp HHHHHHHHHHHHH-------TT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHH
Confidence 4556666665554 36788888877776533
No 42
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=35.65 E-value=2.3e+02 Score=27.38 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 46 KKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQ 83 (422)
Q Consensus 46 e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~ 83 (422)
...++..+..|++++..+....+++++.++.-.+.++.
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~ 77 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLER 77 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555655555555555555554444433
No 43
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=33.97 E-value=2.9e+02 Score=25.05 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=26.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 41 DGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAET 76 (422)
Q Consensus 41 ~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~ 76 (422)
..+...+.+...++.+...+..++....+.|+.|+.
T Consensus 13 k~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 13 KDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344457777777788888888888877777776665
No 44
>PRK14163 heat shock protein GrpE; Provisional
Probab=33.87 E-value=3.4e+02 Score=26.17 Aligned_cols=82 Identities=10% Similarity=0.118 Sum_probs=49.9
Q ss_pred hHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHh
Q 035814 35 AQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCK 108 (422)
Q Consensus 35 ~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~ 108 (422)
+|-....++...+|+...+.-|-+.+++..+++++.+.. +.++|..++.|..-... ..+..-++.+..+
T Consensus 48 ~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~-----~~l~~Gv~mi~k~ 122 (214)
T PRK14163 48 QLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREH-----GELVGGFKSVAES 122 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhc-----hhHHHHHHHHHHH
Confidence 344566677777788888888888888888877766543 35566666666543111 1244445555555
Q ss_pred hHHHHhhcChhHH
Q 035814 109 VSHSYMIYHLSPV 121 (422)
Q Consensus 109 y~~ey~~~~L~~l 121 (422)
|-.-+..||+..+
T Consensus 123 l~~~L~k~Gv~~I 135 (214)
T PRK14163 123 LETTVAKLGLQQF 135 (214)
T ss_pred HHHHHHHCCCEEe
Confidence 5555555666543
No 45
>PRK14157 heat shock protein GrpE; Provisional
Probab=33.84 E-value=1.4e+02 Score=29.01 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=38.7
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhh
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQK 86 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~ 86 (422)
.+|-....++...+|+...+.-|-+.+++..+++++.+.+ +++++..++.|..
T Consensus 84 ~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeR 142 (227)
T PRK14157 84 TPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDR 142 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 4666778888888899888999999999888888777543 3445555555543
No 46
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=33.19 E-value=1.1e+02 Score=25.45 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=37.9
Q ss_pred hhhhhcccchhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 24 TGLAMLKNGTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETV 77 (422)
Q Consensus 24 ~~~~~~~~~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i 77 (422)
|-++|||-|-+. +..++++.-..+...|.+|.++|..+++.++.+-+.|-.+
T Consensus 34 ~KV~~LKksYe~--rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l 85 (87)
T PF12709_consen 34 TKVKALKKSYEA--RWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKL 85 (87)
T ss_pred HHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677766554 3667788888888888999999998888887776655443
No 47
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.04 E-value=3e+02 Score=27.82 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=17.6
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLD 82 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~ 82 (422)
..+.++...+.....|+.+++++...++..+.++..+..-++.++
T Consensus 220 ~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 220 EQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444433333333333333333
No 48
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=32.51 E-value=1e+02 Score=26.06 Aligned_cols=49 Identities=12% Similarity=0.214 Sum_probs=27.2
Q ss_pred hhhhcccchhhHh-hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 25 GLAMLKNGTKAQL-AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD 73 (422)
Q Consensus 25 ~~~~~~~~~~~i~-~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~ 73 (422)
|-.+++..-.+++ ..+.++.+..+++..|+...+.+.+.+...+++++.
T Consensus 57 G~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 57 GNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred chhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333 666666666666666666666666666655555443
No 49
>COG2926 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.09 E-value=3.1e+02 Score=23.16 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHHHHhhc
Q 035814 51 FCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSHSYMIY 116 (422)
Q Consensus 51 ~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ey~~~ 116 (422)
+.+.+-+.++..+++..+++|..-..=+.+++++.+=- ....|.+++...++.++++|-+-...|
T Consensus 15 Vr~~RrKNkl~Rei~DnekKIRDNqKRvlLLdNL~~Yi-k~~Ms~eei~~II~~MksDYEdRVDDy 79 (109)
T COG2926 15 VRLFRRKNKLQREIEDNEKKIRDNQKRVLLLDNLSDYI-KPDMSIEEIQGIIESMKSDYEDRVDDY 79 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777766667666555555666665421 234689999999999999998754433
No 50
>PRK04406 hypothetical protein; Provisional
Probab=31.49 E-value=2e+02 Score=22.97 Aligned_cols=43 Identities=0% Similarity=-0.034 Sum_probs=26.8
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 39 GNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTL 81 (422)
Q Consensus 39 ~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i 81 (422)
.+.++-.-+-++.-.+.-.+.|++.+..+.++|++|+.-+..+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666777777777777777666555444
No 51
>PRK05423 hypothetical protein; Provisional
Probab=31.25 E-value=3.2e+02 Score=23.07 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHHHHh
Q 035814 52 CLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSHSYM 114 (422)
Q Consensus 52 ~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ey~ 114 (422)
.+.+-+.+|..++...+++|.--..=+.+++.+.+=- ....|.+++...++.++.+|-+--.
T Consensus 16 r~~RrKNKl~REi~DnekKIRDNqKRVlLLdNL~~YI-k~~Ms~e~i~~II~nMr~DYEdRVD 77 (104)
T PRK05423 16 RLFRRKNKLQREIQDNEKKIRDNQKRVLLLDNLSDYI-KPGMSIEEIQGIIANMKSDYEDRVD 77 (104)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhhHHHhhH
Confidence 3445566666666666666665555555666655421 2456999999999999999987443
No 52
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.25 E-value=29 Score=26.39 Aligned_cols=39 Identities=10% Similarity=-0.054 Sum_probs=19.1
Q ss_pred ccchhhhhcccchhhHhhchhhhhhhhhhHHHHHHHHHH
Q 035814 21 AGVTGLAMLKNGTKAQLAGNDGSRIKKETAFCLQRNKDK 59 (422)
Q Consensus 21 ~~~~~~~~~~~~~~~i~~~d~~~r~e~d~~~~L~~e~~~ 59 (422)
.++.++.+.-=+.-..++..++++..+.+...++.|.++
T Consensus 28 f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 28 FLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333344456666666555555555555544
No 53
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=30.54 E-value=1.9e+02 Score=24.57 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh---------------cCCCCCCHHHHHHHHHHHHHhhHHHH
Q 035814 62 KMRAAEKQKFDDAETVLNTLDQIQKK---------------NSLGTLTLESLANDFSNLKCKVSHSY 113 (422)
Q Consensus 62 ~~~~~~~~~i~~l~~i~~~i~~~~~~---------------~~~~~~tl~~l~~~f~~L~~~y~~ey 113 (422)
..+...+++|.+|..+-+.+-.+..+ .-..++|++.+...+..|+.+...+.
T Consensus 6 i~l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNltesitle~ve~Ei~~lQ~qL~~~l 72 (99)
T PF11083_consen 6 IKLTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTESITLEQVEKEIRELQNQLGLYL 72 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666554321 11347889999999999988765543
No 54
>PRK10963 hypothetical protein; Provisional
Probab=30.51 E-value=2.4e+02 Score=26.91 Aligned_cols=60 Identities=8% Similarity=0.026 Sum_probs=40.5
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHH
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNL 105 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L 105 (422)
=..+|+..-|+++..|+.+..+|-......+.-.+++..+.-.+- ..-+++++...+..+
T Consensus 41 L~ErQ~~~LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll--------~a~~~~~l~~~L~~~ 100 (223)
T PRK10963 41 LVEWQMARQRNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRLA--------AADSLQDMLMRLHRW 100 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHH
Confidence 346778888888888888888888877766666666666554442 123667776666544
No 55
>PRK11637 AmiB activator; Provisional
Probab=30.33 E-value=2e+02 Score=30.17 Aligned_cols=36 Identities=6% Similarity=0.028 Sum_probs=16.3
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD 73 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~ 73 (422)
+..+++...+..+..++.++.++..+++..+++|+.
T Consensus 51 ~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~ 86 (428)
T PRK11637 51 SIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQ 86 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444433
No 56
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=30.24 E-value=1.7e+02 Score=25.50 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=37.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035814 40 NDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQK 86 (422)
Q Consensus 40 d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~ 86 (422)
..+++....+...++.+.+.+...+...+..+..+..+++.|+.+..
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45566677777788888888888888888888888888888888874
No 57
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.19 E-value=3.1e+02 Score=22.46 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHHHH
Q 035814 91 GTLTLESLANDFSNLKC 107 (422)
Q Consensus 91 ~~~tl~~l~~~f~~L~~ 107 (422)
-.+|.++|...+...+.
T Consensus 46 ~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 46 MKMTPEELAAFLRAMKS 62 (83)
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 35788999888877764
No 58
>PRK14161 heat shock protein GrpE; Provisional
Probab=29.71 E-value=4.7e+02 Score=24.40 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhcC----CCCCCHHHHHHHHHHHHHhhHHHHhhc
Q 035814 47 KETAFCLQRNKDKFDKMRAAEKQKFD------DAETVLNTLDQIQKKNS----LGTLTLESLANDFSNLKCKVSHSYMIY 116 (422)
Q Consensus 47 ~d~~~~L~~e~~~l~~~~~~~~~~i~------~l~~i~~~i~~~~~~~~----~~~~tl~~l~~~f~~L~~~y~~ey~~~ 116 (422)
+|+...+.-|-+.+++..+++.+.+. -+.+++..++.|..... +....+..+..-++-...++-.-...+
T Consensus 39 kd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~~Gv~mi~k~l~~vL~~~ 118 (178)
T PRK14161 39 KDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQMTKDELDKVFHKH 118 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHC
Confidence 44444444455555555555544433 23556666666654211 111224556666666677777777777
Q ss_pred ChhHHHH---HHhhhHHHHhhc
Q 035814 117 HLSPVAY---SLAFPLFIRTFQ 135 (422)
Q Consensus 117 ~L~~lav---~~v~Pllr~~~~ 135 (422)
|+..+-. ...=|-+.+++.
T Consensus 119 Gv~~I~~~~G~~FDP~~HEAv~ 140 (178)
T PRK14161 119 HIEEIKPEIGSMFDYNLHNAIS 140 (178)
T ss_pred CCEEecCCCCCCCChHHhhhhe
Confidence 8776532 234455555544
No 59
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=29.64 E-value=1.2e+02 Score=23.69 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHH
Q 035814 69 QKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSN 104 (422)
Q Consensus 69 ~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~ 104 (422)
+.+++|+.|++.++ ++.++|++....|++
T Consensus 5 e~l~~Le~Iv~~LE-------~~~l~Leesl~lyee 33 (67)
T TIGR01280 5 EALSELEQIVQKLE-------SGDLALEEALNLFER 33 (67)
T ss_pred HHHHHHHHHHHHHH-------CCCCCHHHHHHHHHH
Confidence 34566666666554 477888887777664
No 60
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.52 E-value=4e+02 Score=27.06 Aligned_cols=47 Identities=11% Similarity=0.002 Sum_probs=19.4
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQI 84 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~ 84 (422)
..+.++...+.....++.+.+++...++...+++..+.+-++..+++
T Consensus 215 ~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444333333333
No 61
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=28.97 E-value=1.1e+02 Score=24.09 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=25.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035814 41 DGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQI 84 (422)
Q Consensus 41 ~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~ 84 (422)
.+++....+...++.+.++++.+-+..+.++.++.+ .+.|+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~ 66 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKI 66 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHH
Confidence 344455555566666666666666666666666665 4445554
No 62
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.60 E-value=3.5e+02 Score=29.15 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=41.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--------CCCCCCHHHHHHHHHHHHHhhHH
Q 035814 45 IKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKN--------SLGTLTLESLANDFSNLKCKVSH 111 (422)
Q Consensus 45 ~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~--------~~~~~tl~~l~~~f~~L~~~y~~ 111 (422)
...+.+..|+.+.++++.+++..+.+++.++.-++.++.+.... ..+..+++++.+.+.-+.++..+
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIER 142 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777777777777777766421 11245677766666555555544
No 63
>PRK09458 pspB phage shock protein B; Provisional
Probab=28.47 E-value=86 Score=25.26 Aligned_cols=25 Identities=8% Similarity=0.263 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 56 NKDKFDKMRAAEKQKFDDAETVLNT 80 (422)
Q Consensus 56 e~~~l~~~~~~~~~~i~~l~~i~~~ 80 (422)
..++|.+..++-+++|+.||+|+++
T Consensus 43 ~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 43 RLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4555666667777778888887753
No 64
>PRK09343 prefoldin subunit beta; Provisional
Probab=27.96 E-value=1.6e+02 Score=25.56 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=29.9
Q ss_pred hhhhcccchhhHh-hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 25 GLAMLKNGTKAQL-AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD 73 (422)
Q Consensus 25 ~~~~~~~~~~~i~-~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~ 73 (422)
|=.+++.--.+++ ..+.++.+.+.++..|+...+.+++.+...++++..
T Consensus 61 G~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 61 GNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443 666677777777777777777777776666655543
No 65
>PRK14146 heat shock protein GrpE; Provisional
Probab=27.92 E-value=4.4e+02 Score=25.33 Aligned_cols=86 Identities=9% Similarity=0.046 Sum_probs=51.2
Q ss_pred HhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcC--CCCCCHHHHHHHHHHHHH
Q 035814 36 QLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNS--LGTLTLESLANDFSNLKC 107 (422)
Q Consensus 36 i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~--~~~~tl~~l~~~f~~L~~ 107 (422)
+-....++..-+|+...+.-|-+.+++..+++...+.. +.+++..++.|..... ...-....+..-++-+..
T Consensus 63 l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~~~~~~~~~~l~~Gv~mi~k 142 (215)
T PRK14146 63 LDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQNQSEELKPFVEGVKMILK 142 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 33445556666777777777777777777777666443 3566777777654211 111123445555666666
Q ss_pred hhHHHHhhcChhHH
Q 035814 108 KVSHSYMIYHLSPV 121 (422)
Q Consensus 108 ~y~~ey~~~~L~~l 121 (422)
.|-.-+..+|+..+
T Consensus 143 ~l~~~L~k~Gv~~i 156 (215)
T PRK14146 143 EFYSVLEKSNVIRF 156 (215)
T ss_pred HHHHHHHHCcCeee
Confidence 66666666776654
No 66
>PRK09039 hypothetical protein; Validated
Probab=27.76 E-value=2.9e+02 Score=28.36 Aligned_cols=47 Identities=11% Similarity=0.081 Sum_probs=33.5
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQI 84 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~ 84 (422)
+..+++..++........+...|+.+++..+.++..++..++..+.-
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777777777777777777777766666543
No 67
>PRK14153 heat shock protein GrpE; Provisional
Probab=27.69 E-value=5.3e+02 Score=24.42 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=49.9
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcC--CCCCCHHHHHHHHHHH
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNS--LGTLTLESLANDFSNL 105 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~--~~~~tl~~l~~~f~~L 105 (422)
++|-....++...+|+...+.-|-+.+++..+++...+.. +.+++..++.|..... ...-.+..+..-|+-+
T Consensus 40 ~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~~~~~~l~~Gvemi 119 (194)
T PRK14153 40 SETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERALESARTAEDMNSIVEGIEMV 119 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchHHHHHHHHHHH
Confidence 3444555566666677777777777777777766655432 3556666666543211 1111244555666666
Q ss_pred HHhhHHHHhhcChhHH
Q 035814 106 KCKVSHSYMIYHLSPV 121 (422)
Q Consensus 106 ~~~y~~ey~~~~L~~l 121 (422)
..+|-.-+..+|+..+
T Consensus 120 ~k~~~~vL~k~Gv~~I 135 (194)
T PRK14153 120 SKQFFSILEKYGLERI 135 (194)
T ss_pred HHHHHHHHHHCCCeee
Confidence 6666666666666654
No 68
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.56 E-value=1.6e+02 Score=24.98 Aligned_cols=41 Identities=10% Similarity=0.073 Sum_probs=21.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035814 44 RIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQI 84 (422)
Q Consensus 44 r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~ 84 (422)
+.-+.++..++.+.++++.+.+..+++|++|++=.++|+..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 33444455555566666666666666666665423444433
No 69
>PRK14164 heat shock protein GrpE; Provisional
Probab=27.40 E-value=4.5e+02 Score=25.37 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=37.0
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhh
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQK 86 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~ 86 (422)
..+-....++...+|+...+.-|-+.+++..+++.+.+.+ +.+++..++.|..
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpVlDnLer 135 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDDLDL 135 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 4455556777777888888888888888888877766543 3556666666653
No 70
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.18 E-value=5.1e+02 Score=25.18 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=27.2
Q ss_pred hHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035814 35 AQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQI 84 (422)
Q Consensus 35 ~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~ 84 (422)
+|++.=..+++|..-+.-++.|.+.|..+-....+++..+..=+..++.+
T Consensus 19 ~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~i 68 (230)
T PF10146_consen 19 EILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENI 68 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555666666666666555555555444444444444
No 71
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.17 E-value=2.7e+02 Score=21.11 Aligned_cols=31 Identities=3% Similarity=0.138 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 50 AFCLQRNKDKFDKMRAAEKQKFDDAETVLNT 80 (422)
Q Consensus 50 ~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~ 80 (422)
+..++.|.+++.+.++..++-++++=++.+.
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333333
No 72
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=27.11 E-value=2.9e+02 Score=25.27 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=15.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 45 IKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVL 78 (422)
Q Consensus 45 ~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~ 78 (422)
..+.+...+.+|.+++.+.......++..+++..
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~ 118 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDL 118 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333
No 73
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.91 E-value=1.4e+02 Score=24.05 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHH
Q 035814 69 QKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSN 104 (422)
Q Consensus 69 ~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~ 104 (422)
+.+++|+.|++.++ ++.++|++....|++
T Consensus 10 eal~~Le~IV~~LE-------~gdl~Leesl~lyee 38 (76)
T PRK14068 10 EMMQELEQIVQKLD-------NETVSLEESLDLYQR 38 (76)
T ss_pred HHHHHHHHHHHHHH-------cCCCCHHHHHHHHHH
Confidence 44556666655554 477899988777764
No 74
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.81 E-value=1.3e+02 Score=24.24 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHH
Q 035814 69 QKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSN 104 (422)
Q Consensus 69 ~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~ 104 (422)
+.+++|+.|++.++ ++.++|++....|++
T Consensus 14 ea~~~LEeIv~~LE-------~~~l~Lees~~lyee 42 (80)
T PRK00977 14 EALAELEEIVTRLE-------SGDLPLEESLAAFER 42 (80)
T ss_pred HHHHHHHHHHHHHH-------CCCCCHHHHHHHHHH
Confidence 44556666665554 477899988777664
No 75
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.76 E-value=3.1e+02 Score=24.53 Aligned_cols=30 Identities=10% Similarity=0.074 Sum_probs=11.8
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAE 67 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~ 67 (422)
+.+..|..-..++..|+.+.+++...+...
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444333333
No 76
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=26.68 E-value=3.5e+02 Score=30.63 Aligned_cols=57 Identities=5% Similarity=-0.015 Sum_probs=34.4
Q ss_pred hhhcccchhh------HhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 26 LAMLKNGTKA------QLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLD 82 (422)
Q Consensus 26 ~~~~~~~~~~------i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~ 82 (422)
-+.-+||+.. ..|.++.+-|-.=.+.+|+....-|.+++-..-.++++|+.=...+.
T Consensus 845 ~~~~~nttt~eh~eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p 907 (961)
T KOG4673|consen 845 KSITPNTTTSEHYEALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVP 907 (961)
T ss_pred hhhcCCCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3456788765 23667777777777777776666666666555555555554444433
No 77
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.55 E-value=1.5e+02 Score=22.75 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=17.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 44 RIKKETAFCLQRNKDKFDKMRAAEKQKFDDA 74 (422)
Q Consensus 44 r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l 74 (422)
..-+.++..|+.+.+++.++.+..+.+++++
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556666666666665555555555
No 78
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.37 E-value=2.4e+02 Score=24.92 Aligned_cols=9 Identities=33% Similarity=1.095 Sum_probs=4.1
Q ss_pred hhhhhhhhh
Q 035814 6 WSKQWKMKK 14 (422)
Q Consensus 6 ~~~~~~~~~ 14 (422)
|=|-|+...
T Consensus 24 wwKGws~sD 32 (126)
T PF07889_consen 24 WWKGWSFSD 32 (126)
T ss_pred eecCCchhH
Confidence 445554433
No 79
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=26.29 E-value=2.1e+02 Score=22.55 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=33.3
Q ss_pred cccchhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 29 LKNGTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLN 79 (422)
Q Consensus 29 ~~~~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~ 79 (422)
+-+..-++.+..+++...+.+...++.|-++|..+.+.... -++++++-+
T Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar 68 (85)
T TIGR02209 19 VVSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAK 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHH
Confidence 44444566677777788888888888888888877776543 444555443
No 80
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.15 E-value=1.4e+02 Score=23.89 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHH
Q 035814 69 QKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSN 104 (422)
Q Consensus 69 ~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~ 104 (422)
+.+.+|+.|++.++ ++.++|++....|++
T Consensus 9 eal~~LE~Iv~~LE-------~~~l~Leesl~lyee 37 (76)
T PRK14063 9 EAISQLEHLVSKLE-------QGDVPLEEAISYFKE 37 (76)
T ss_pred HHHHHHHHHHHHHH-------CCCCCHHHHHHHHHH
Confidence 45666666666654 477899988777764
No 81
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=26.10 E-value=1.6e+02 Score=24.57 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=19.3
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD 73 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~ 73 (422)
..+.++......+..|+.+.+.+.+++...+.+|..
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555544443
No 82
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=25.78 E-value=1.5e+02 Score=24.37 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=27.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 43 SRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVL 78 (422)
Q Consensus 43 ~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~ 78 (422)
....+++..+|++|..+|++.+..+..--.-|+..+
T Consensus 3 k~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al 38 (88)
T PF14389_consen 3 KQALHERRSALEQEVAELQKQLQEEQDLRRALEKAL 38 (88)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788999999999999998876655555544
No 83
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=25.67 E-value=1.9e+02 Score=24.67 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035814 46 KKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQK 86 (422)
Q Consensus 46 e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~ 86 (422)
...+...|+.+.+.+...+...+..+.+++..++.|+.+..
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~ 44 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKG 44 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44556678888888888888888888888888888888864
No 84
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=25.58 E-value=1.9e+02 Score=33.42 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=60.1
Q ss_pred chhhhccchhhhhc---------ccchhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035814 16 DWQACAGVTGLAML---------KNGTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQK 86 (422)
Q Consensus 16 ~~~~~~~~~~~~~~---------~~~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~ 86 (422)
|| .|.|.||.-.+ ..|+..+.+.-++.-.+......+-+++++.-... ...-++++|...+..|..-.
T Consensus 294 ~W-~v~GTtGYdfl~~v~~l~~d~~~~~~l~~~~~~~~g~~~~~~~~v~~~k~~i~~~-~l~~E~~~L~~~l~~i~~~~- 370 (825)
T TIGR02401 294 DW-PVDGTTGYDFLNEVNGVLVDAAGEEPLTALYRNFTGRPQDIEETLRRAKRLVLRH-LLASEIRRLARLLARLAELD- 370 (825)
T ss_pred CC-CcCcccCChhhHHhcccccCcchHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHhhC-
Confidence 56 68999997642 23666666666555444444444444444443222 22345666666666554222
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhHHHHhhcCh
Q 035814 87 KNSLGTLTLESLANDFSNLKCKVSHSYMIYHL 118 (422)
Q Consensus 87 ~~~~~~~tl~~l~~~f~~L~~~y~~ey~~~~L 118 (422)
......|...+...+.++...|| -|+.|--
T Consensus 371 -~~~~d~t~~~l~~al~e~la~fp-VYRtY~~ 400 (825)
T TIGR02401 371 -PAARDFTPEALRQALRELLACFP-VYRTYLP 400 (825)
T ss_pred -cccccCCHHHHHHHHHHHHHcCC-ccCcCCC
Confidence 12346789999999999999999 6887763
No 85
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.52 E-value=2.7e+02 Score=26.94 Aligned_cols=51 Identities=6% Similarity=0.005 Sum_probs=28.7
Q ss_pred chhhHhhchhhhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 32 GTKAQLAGNDGSRIKK----ETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLD 82 (422)
Q Consensus 32 ~~~~i~~~d~~~r~e~----d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~ 82 (422)
-.+++.+..++.+... |+...|..+.+.+.++++..+...++++..++..+
T Consensus 29 ~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~ 83 (251)
T PF11932_consen 29 VQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQE 83 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443 33446667777777777776666666666555433
No 86
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.03 E-value=1.5e+02 Score=25.01 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHH
Q 035814 69 QKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSN 104 (422)
Q Consensus 69 ~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~ 104 (422)
+.+++|+.|++.|+ ++.++|++....|++
T Consensus 12 eal~~LEeIV~~LE-------sgdl~LEesl~lyee 40 (95)
T PRK14069 12 DALRELEQIAEKLE-------RQDFSLEESLKAYER 40 (95)
T ss_pred HHHHHHHHHHHHHH-------CCCCCHHHHHHHHHH
Confidence 44666666666554 478899998777764
No 87
>PRK14149 heat shock protein GrpE; Provisional
Probab=24.93 E-value=6e+02 Score=24.05 Aligned_cols=84 Identities=10% Similarity=-0.012 Sum_probs=54.0
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcC--CCCCCHHHHHHHHHHHHHhh
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNS--LGTLTLESLANDFSNLKCKV 109 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~--~~~~tl~~l~~~f~~L~~~y 109 (422)
....++...+|+...+.-|-+.+++..+++.+.+.+ +.+++..++.|..... ........+..-++-....|
T Consensus 47 ~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~~~~~~~l~~Gv~mi~k~l 126 (191)
T PRK14149 47 DFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSAAEVDKESALTKGLELTMEKL 126 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 556666667777777888888888888877766543 3566777777654211 11223455666666677777
Q ss_pred HHHHhhcChhHH
Q 035814 110 SHSYMIYHLSPV 121 (422)
Q Consensus 110 ~~ey~~~~L~~l 121 (422)
-.-+..||+..+
T Consensus 127 ~~vL~k~GV~~I 138 (191)
T PRK14149 127 HEVLARHGIEGI 138 (191)
T ss_pred HHHHHHCCCEEe
Confidence 766777777654
No 88
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.91 E-value=3.2e+02 Score=21.83 Aligned_cols=42 Identities=12% Similarity=0.066 Sum_probs=29.7
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLN 79 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~ 79 (422)
+...+++..=|++..|+-|.+.|.+.-.....+......--+
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~re 49 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQRE 49 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence 566788888899999998888888776665555544443333
No 89
>PRK14160 heat shock protein GrpE; Provisional
Probab=24.91 E-value=6.3e+02 Score=24.29 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=35.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHHHH
Q 035814 40 NDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFD------DAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSHSY 113 (422)
Q Consensus 40 d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~------~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ey 113 (422)
..++..-+|+...+..+-+.+++..+++...+. -+.+++..++.|...... ....+.+..-+......|-.-+
T Consensus 74 ~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~-~~~~~~l~~Gv~mi~kql~~vL 152 (211)
T PRK14160 74 ENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAV-EGSVEDLKKGIEMTVKQFKTSL 152 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc-ccchhHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444322 224444555555432111 1123344444555555555555
Q ss_pred hhcChhHH
Q 035814 114 MIYHLSPV 121 (422)
Q Consensus 114 ~~~~L~~l 121 (422)
..+|+..+
T Consensus 153 ~k~GVe~I 160 (211)
T PRK14160 153 EKLGVEEI 160 (211)
T ss_pred HHCCCEEe
Confidence 55555543
No 90
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.90 E-value=1.3e+02 Score=26.25 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=32.5
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLD 82 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~ 82 (422)
..+.-+.+-+++...|+...+++...+...+++++.+...+..+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777778888888888887777777776666665543
No 91
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=24.59 E-value=3.4e+02 Score=25.61 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhHHHHhhc
Q 035814 98 LANDFSNLKCKVSHSYMIY 116 (422)
Q Consensus 98 l~~~f~~L~~~y~~ey~~~ 116 (422)
+...|..+..+.-+-|..|
T Consensus 112 L~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 112 LEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444333
No 92
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.58 E-value=2.4e+02 Score=24.20 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=33.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035814 45 IKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQK 86 (422)
Q Consensus 45 ~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~ 86 (422)
........|+.+.+.+...++..+..+..++.+++.|+.+..
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556677888888888888888888888888888888875
No 93
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=24.58 E-value=96 Score=27.60 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhhhc--CCCCCCHHHHHHHHHHHHHhhHHHHhhc--ChhHHHHHHhhhH
Q 035814 75 ETVLNTLDQIQKKN--SLGTLTLESLANDFSNLKCKVSHSYMIY--HLSPVAYSLAFPL 129 (422)
Q Consensus 75 ~~i~~~i~~~~~~~--~~~~~tl~~l~~~f~~L~~~y~~ey~~~--~L~~lav~~v~Pl 129 (422)
+++++.|..+++.. .-+..|-+++...=++|.-.+|++|+.| ..++++.+.+-|+
T Consensus 2 ~~~i~~L~~~~e~~~~~l~lpd~e~I~~~Ee~L~i~lP~eyk~fL~~~s~v~~G~~E~~ 60 (132)
T PF14567_consen 2 EDIIERLKELNEPVPVPLELPDDEQIVEAEEQLGISLPEEYKEFLLEASDVIYGGLEPV 60 (132)
T ss_dssp HHHHHHHHHH----SS------HHHHHHHHHHHT----HHHHHHHHHHTT--BTTB-B-
T ss_pred hHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCeeecceEEE
Confidence 45555555554432 1234677888888889999999999985 3334444444443
No 94
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=24.54 E-value=4e+02 Score=21.96 Aligned_cols=71 Identities=14% Similarity=0.027 Sum_probs=39.8
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHh
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCK 108 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~ 108 (422)
++|-.+..+++....+...|++....+.+.-. +++-.+|=.-=..++.+-.. ...+|-+++...+..+...
T Consensus 8 ~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eR--K~RtHRLi~rGa~lEsi~~e--~~~lT~~E~~~ll~~~~~~ 78 (86)
T PF12958_consen 8 AEIEKAEKKLEQAEHKIKQLENRKKKLEKKER--KERTHRLIERGAILESIFPE--PKDLTNDEFYELLEFLFHL 78 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHhhc--chhcCHHHHHHHHHHHHcC
Confidence 34455666666666677777777777665221 22233443333444444332 2567888888777766543
No 95
>PRK14145 heat shock protein GrpE; Provisional
Probab=24.52 E-value=6.1e+02 Score=24.06 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=43.6
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHH
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSH 111 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ 111 (422)
....++..-+|+...+.-|-+.+++..+++.+.+.+ +.+++..++.|...... ....+.+..-++-...+|-.
T Consensus 56 ~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~-~~~~~~l~~Gv~mi~k~l~~ 134 (196)
T PRK14145 56 QKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALAS-SGDYNSLKEGIELIYRQFKK 134 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhc-cccHHHHHHHHHHHHHHHHH
Confidence 444444555566666666666666666666655443 24555566655432111 11234455555555555555
Q ss_pred HHhhcChhHH
Q 035814 112 SYMIYHLSPV 121 (422)
Q Consensus 112 ey~~~~L~~l 121 (422)
-+..+|+..+
T Consensus 135 vL~k~GVe~I 144 (196)
T PRK14145 135 ILDKFGVKEI 144 (196)
T ss_pred HHHHCCCEEe
Confidence 5555666544
No 96
>PRK00736 hypothetical protein; Provisional
Probab=24.36 E-value=2.8e+02 Score=21.62 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=25.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 42 GSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTL 81 (422)
Q Consensus 42 ~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i 81 (422)
++-.-+-+++-.+.-.+.|++.+..+.++|++|+.-+..+
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666667777777777777777776544444
No 97
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=24.16 E-value=2.2e+02 Score=33.07 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=65.9
Q ss_pred chhhhccchhhhhc---------ccchhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035814 16 DWQACAGVTGLAML---------KNGTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQK 86 (422)
Q Consensus 16 ~~~~~~~~~~~~~~---------~~~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~ 86 (422)
||. |+|.||.-.+ ..|+..+-+.-++.-........+.++++++...... .-++++|...+..|..-..
T Consensus 340 ~W~-v~GTTGYdfl~~v~~l~~d~~g~~~l~~~y~~~~g~~~~~~~~~~~~K~~i~~~~l-~~E~~~L~~~l~~i~~~~~ 417 (879)
T PRK14511 340 DWP-VDGTTGYDFLNQVNGLLVDPAGEEPLTELYARFTGRPADFDELVRQAKRLVLDGSL-AGEVERLAQLLLRVARDDL 417 (879)
T ss_pred CCC-CCCCcHHHHHHHhcCeeeCCcchhHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhCc
Confidence 564 8899997554 3578887788777766666666666666665544322 3356666666655543221
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhHHHHhhcCh
Q 035814 87 KNSLGTLTLESLANDFSNLKCKVSHSYMIYHL 118 (422)
Q Consensus 87 ~~~~~~~tl~~l~~~f~~L~~~y~~ey~~~~L 118 (422)
.....|+..+...+.++..-|| -|+.|--
T Consensus 418 --~~rD~t~~~l~~al~e~la~fp-VYRtY~~ 446 (879)
T PRK14511 418 --RTRDFTLGALRRALVELIAAFP-VYRTYLP 446 (879)
T ss_pred --ccccCCHHHHHHHHHHHHHcCC-ccCcCCC
Confidence 2346788999999999999999 6888764
No 98
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.12 E-value=3.6e+02 Score=23.83 Aligned_cols=39 Identities=5% Similarity=0.049 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035814 49 TAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKK 87 (422)
Q Consensus 49 ~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~ 87 (422)
+...+..+.+.+.+.++..+.++..++...+.+++-...
T Consensus 75 ~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~ 113 (134)
T cd04779 75 EQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRM 113 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777788888888888888888888888775443
No 99
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.10 E-value=55 Score=38.15 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhHHHHhhcChhHHHHHHhhhHHH
Q 035814 95 LESLANDFSNLKCKVSHSYMIYHLSPVAYSLAFPLFI 131 (422)
Q Consensus 95 l~~l~~~f~~L~~~y~~ey~~~~L~~lav~~v~Pllr 131 (422)
++.|...|..+.-.|.+.+..|+ ..-+-++|+.+|+
T Consensus 495 ~~~l~a~~~~~~f~Y~dP~~nfd-rs~V~G~Va~Li~ 530 (1174)
T KOG0933|consen 495 LDRLLARLANYEFTYQDPEPNFD-RSKVKGLVAKLIK 530 (1174)
T ss_pred HHHHHhhhcccccccCCCCccch-HHHHHHHHHHHhe
Confidence 33444444445555555556666 4455666666665
No 100
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.02 E-value=4.2e+02 Score=32.85 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHH
Q 035814 48 ETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNL 105 (422)
Q Consensus 48 d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L 105 (422)
++...|+.+..++...++..+.++.+++..++.++..+.-.....+|.+++...++.+
T Consensus 390 eeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF 447 (1486)
T PRK04863 390 EEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEF 447 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 3333444444444444444455555555555555555544333567766655443333
No 101
>PRK02793 phi X174 lysis protein; Provisional
Probab=23.79 E-value=3.3e+02 Score=21.45 Aligned_cols=41 Identities=7% Similarity=-0.007 Sum_probs=25.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 41 DGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTL 81 (422)
Q Consensus 41 ~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i 81 (422)
.++-.-+-++.-.+.-.+.|++.+..+.++|++|+.-+..+
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666777777777777777766655444
No 102
>PRK14143 heat shock protein GrpE; Provisional
Probab=23.71 E-value=6.6e+02 Score=24.55 Aligned_cols=86 Identities=12% Similarity=0.158 Sum_probs=49.0
Q ss_pred HhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhcCC---CCCCHHHHHHHHHHHH
Q 035814 36 QLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFD------DAETVLNTLDQIQKKNSL---GTLTLESLANDFSNLK 106 (422)
Q Consensus 36 i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~------~l~~i~~~i~~~~~~~~~---~~~tl~~l~~~f~~L~ 106 (422)
|-...+++..-+|+...+.-|-+.+++...++++.+. -+.+++..++.|..-... ..-....+..-++.+.
T Consensus 76 l~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~Gve~i~ 155 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQALHRSYQGLY 155 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 3344555555666666677777777777776665543 345667777766542111 1112344555566666
Q ss_pred HhhHHHHhhcChhHH
Q 035814 107 CKVSHSYMIYHLSPV 121 (422)
Q Consensus 107 ~~y~~ey~~~~L~~l 121 (422)
.++-+-+..+|+..+
T Consensus 156 k~l~~~L~k~GV~~i 170 (238)
T PRK14143 156 KQLVDVLKRLGVSPM 170 (238)
T ss_pred HHHHHHHHHCCCeee
Confidence 666666666666655
No 103
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=23.56 E-value=2.6e+02 Score=23.86 Aligned_cols=36 Identities=14% Similarity=0.368 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHHHHhh
Q 035814 76 TVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSHSYMI 115 (422)
Q Consensus 76 ~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ey~~ 115 (422)
.+++.|+.+++ |.+++..+...+..+..+|+++|-.
T Consensus 73 ~~~~~i~~yr~----g~i~l~~~l~~L~~~~~ry~~~YL~ 108 (117)
T PF08349_consen 73 HFLDLIEDYRE----GKIPLSVPLTLLKHLARRYPDEYLL 108 (117)
T ss_pred HHHHHHHHHHc----CCccHHHHHHHHHHHHHHCCCHHHh
Confidence 34555555554 6788999999999999999998853
No 104
>PF06761 IcmF-related: Intracellular multiplication and human macrophage-killing; InterPro: IPR009612 This entry represents a conserved region within several bacterial proteins that resemble ImcF, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation, resulting in increased adherence to epithelial cells and increased conjugation frequency. Note that many entry members are hypothetical proteins.
Probab=23.55 E-value=3.3e+02 Score=27.07 Aligned_cols=76 Identities=17% Similarity=0.492 Sum_probs=52.7
Q ss_pred HHHHHHhhhhHHHHHHHH-hhhcCC-CCcc--hhHHHHhhhcccccc-cCCCChHHHHHHHH-HHHhhchHHhhcchhHH
Q 035814 290 WEQLMHRYIVPKLQVTVQ-ELEINP-ANQK--LYQFHWVMSWASAIP-SSPNDFEEIRKWYK-GWKDLLPQELVANESIR 363 (422)
Q Consensus 290 ~~~~L~k~IlPKL~~~L~-~~~InP-~~Q~--le~~~~vl~W~~~i~-~~~pn~~EV~~WY~-~WK~~fp~~l~~~~~I~ 363 (422)
+...+.+.++|.+...|. .+.-++ .+.+ ++.++-|+ |+. ++.-|-+.|..|+. .|...+|.+.. ...++
T Consensus 44 Y~~~L~~~llP~l~~~le~~L~~~~~~~~~~~y~aLk~YL----ML~~~~~~d~~~l~~w~~~~w~~~~~~~~~-~~~~~ 118 (312)
T PF06761_consen 44 YQRLLQQLLLPRLAQRLEQQLRAAPNDDPDALYEALKAYL----MLTDPEHRDADFLKAWLAQDWQEQYPGQPD-QAELR 118 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHH----hcCCCccCCHHHHHHHHHHHHHHhCCCCcc-hhHHH
Confidence 888899999999999996 466655 3332 56777766 444 35678899999987 68888888732 12234
Q ss_pred HHHHHHH
Q 035814 364 AQLSIGV 370 (422)
Q Consensus 364 ~~f~~aL 370 (422)
..|..-+
T Consensus 119 ~~l~~hl 125 (312)
T PF06761_consen 119 AQLAFHL 125 (312)
T ss_pred HHHHHHH
Confidence 4554444
No 105
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=23.54 E-value=2e+02 Score=26.79 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=28.1
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHH
Q 035814 39 GNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSH 111 (422)
Q Consensus 39 ~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ 111 (422)
.+.+++....++..|+.+...+...+...+.+++..+..++. ++++...-.+.+..+...+.+|+.++.+
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~---l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI---LQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333332222 2222212234455566667777666543
No 106
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.51 E-value=2.8e+02 Score=23.40 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035814 46 KKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQK 86 (422)
Q Consensus 46 e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~ 86 (422)
...+...|+.+.+.+..........+..++.+.+.|+.+..
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555667788888888888888888888888888888863
No 107
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.29 E-value=4e+02 Score=29.21 Aligned_cols=80 Identities=10% Similarity=0.074 Sum_probs=54.1
Q ss_pred chhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCCCCCHHHHHHHHHHHHHhhH
Q 035814 32 GTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQI-QKKNSLGTLTLESLANDFSNLKCKVS 110 (422)
Q Consensus 32 ~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~-~~~~~~~~~tl~~l~~~f~~L~~~y~ 110 (422)
..+.|-..+..+....+++..+..+.+.+.+.-+..+.++..+.+..+.+.+- -....+-..+++.+...+..+..+|.
T Consensus 99 a~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~ 178 (560)
T PF06160_consen 99 AKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFS 178 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHH
Confidence 34556677777777777777888888888777777777777776666555532 22222334577788888887777776
Q ss_pred H
Q 035814 111 H 111 (422)
Q Consensus 111 ~ 111 (422)
+
T Consensus 179 ~ 179 (560)
T PF06160_consen 179 E 179 (560)
T ss_pred H
Confidence 3
No 108
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=23.15 E-value=2.9e+02 Score=24.76 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=28.8
Q ss_pred hhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 37 LAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLD 82 (422)
Q Consensus 37 ~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~ 82 (422)
.+-.+++-.+.+++..|+.|.++.+..+++..+.+++|+.=....+
T Consensus 30 ~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~ 75 (160)
T PF13094_consen 30 RALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALE 75 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666667777777777777776666666665444443
No 109
>PRK14140 heat shock protein GrpE; Provisional
Probab=23.00 E-value=6.5e+02 Score=23.78 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=49.6
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcC--CCCCCHHHHHHHHHHHHHhh
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNS--LGTLTLESLANDFSNLKCKV 109 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~--~~~~tl~~l~~~f~~L~~~y 109 (422)
....++..-+|+...+.-|.+.+++..+++...+.. +.+++..++.|..... +..-.+..+..-++.+...|
T Consensus 48 ~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~~~~~~~i~~Gv~mi~k~l 127 (191)
T PRK14140 48 ELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEADDEQTKSLLKGVEMVHRQL 127 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHH
Confidence 445556666777777777777777777777666442 3556666666654211 11123455555666666666
Q ss_pred HHHHhhcChhHH
Q 035814 110 SHSYMIYHLSPV 121 (422)
Q Consensus 110 ~~ey~~~~L~~l 121 (422)
-.-+..||+..+
T Consensus 128 ~~~L~k~GV~~i 139 (191)
T PRK14140 128 LEALKKEGVEVI 139 (191)
T ss_pred HHHHHHCCCEee
Confidence 666666776543
No 110
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.86 E-value=2.9e+02 Score=22.71 Aligned_cols=38 Identities=8% Similarity=0.087 Sum_probs=24.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 44 RIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTL 81 (422)
Q Consensus 44 r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i 81 (422)
..-.+++..|..+..+|..+++....++++++..-..|
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREV 72 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444556677777777777777777777666655444
No 111
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=22.83 E-value=2.4e+02 Score=24.22 Aligned_cols=50 Identities=16% Similarity=0.012 Sum_probs=28.4
Q ss_pred hhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 33 TKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLD 82 (422)
Q Consensus 33 ~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~ 82 (422)
...|-..|+.|....+.+..|..+..++...-.+.+..++.++.=-..|+
T Consensus 42 A~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe 91 (116)
T PF05064_consen 42 ATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELE 91 (116)
T ss_dssp -------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888777777777666555555555544443333
No 112
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=22.80 E-value=86 Score=27.70 Aligned_cols=37 Identities=8% Similarity=0.066 Sum_probs=20.7
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDA 74 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l 74 (422)
-..|..+.++.+...++.+.+.|+.+++..+.+++++
T Consensus 95 E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 95 EYWRSARKEAKKEEELQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566665566666666666655555555443
No 113
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=22.80 E-value=1.2e+02 Score=24.35 Aligned_cols=26 Identities=8% Similarity=0.265 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 54 QRNKDKFDKMRAAEKQKFDDAETVLN 79 (422)
Q Consensus 54 ~~e~~~l~~~~~~~~~~i~~l~~i~~ 79 (422)
++..++|....++.+++|+.||.|++
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556666677777777888887774
No 114
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.43 E-value=2.8e+02 Score=21.03 Aligned_cols=28 Identities=7% Similarity=0.074 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 51 FCLQRNKDKFDKMRAAEKQKFDDAETVL 78 (422)
Q Consensus 51 ~~L~~e~~~l~~~~~~~~~~i~~l~~i~ 78 (422)
..||.+..++...++..+++++.+.+-+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESV 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666665555444433
No 115
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.71 E-value=5.1e+02 Score=28.38 Aligned_cols=80 Identities=9% Similarity=0.054 Sum_probs=57.9
Q ss_pred chhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCCCCCHHHHHHHHHHHHHhhH
Q 035814 32 GTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQI-QKKNSLGTLTLESLANDFSNLKCKVS 110 (422)
Q Consensus 32 ~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~-~~~~~~~~~tl~~l~~~f~~L~~~y~ 110 (422)
..+.|-..+..+...++++..+..+.+.|...-+..+.+++.+.+..+.+.+- -....+-..+++.+...+..+..+|.
T Consensus 103 a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~ 182 (569)
T PRK04778 103 AKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFS 182 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHH
Confidence 34556688888888888888898888888888888888888777777666543 22222334577788777777777776
Q ss_pred H
Q 035814 111 H 111 (422)
Q Consensus 111 ~ 111 (422)
.
T Consensus 183 ~ 183 (569)
T PRK04778 183 Q 183 (569)
T ss_pred H
Confidence 3
No 116
>PRK14148 heat shock protein GrpE; Provisional
Probab=21.70 E-value=6.9e+02 Score=23.65 Aligned_cols=86 Identities=9% Similarity=0.040 Sum_probs=41.2
Q ss_pred HhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcC--CCCCCHHHHHHHHHHHHH
Q 035814 36 QLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNS--LGTLTLESLANDFSNLKC 107 (422)
Q Consensus 36 i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~--~~~~tl~~l~~~f~~L~~ 107 (422)
|-....++...+|+...+.-|-+.+++..+++.+.+.. +.+++..++.|..... ...-....+..-++-...
T Consensus 49 l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi~k 128 (195)
T PRK14148 49 IKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVKLEEAIAMKEGIELTAK 128 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555544332 3455555555543211 111123344455555555
Q ss_pred hhHHHHhhcChhHH
Q 035814 108 KVSHSYMIYHLSPV 121 (422)
Q Consensus 108 ~y~~ey~~~~L~~l 121 (422)
.|-.-+..+|+..+
T Consensus 129 ~l~~vL~k~Gv~~I 142 (195)
T PRK14148 129 MLVDILKKNGVEEL 142 (195)
T ss_pred HHHHHHHHCCCEEe
Confidence 55555555665544
No 117
>smart00338 BRLZ basic region leucin zipper.
Probab=21.61 E-value=2.6e+02 Score=21.05 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 51 FCLQRNKDKFDKMRAAEKQKFDDAE 75 (422)
Q Consensus 51 ~~L~~e~~~l~~~~~~~~~~i~~l~ 75 (422)
..|+.+.+.|..+......+++.|+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 118
>PRK14151 heat shock protein GrpE; Provisional
Probab=21.55 E-value=6.6e+02 Score=23.33 Aligned_cols=90 Identities=10% Similarity=0.096 Sum_probs=59.6
Q ss_pred chhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcC---CCCCCHHHHHHHH
Q 035814 32 GTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNS---LGTLTLESLANDF 102 (422)
Q Consensus 32 ~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~---~~~~tl~~l~~~f 102 (422)
.+++|-....++..-+|+...+.-|-+.+++..+++.+.+.+ +.+++..++.|+.... ...-.+..+..-+
T Consensus 25 l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~Gv 104 (176)
T PRK14151 25 LTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKPMREGV 104 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHH
Confidence 344555667778888888888888999999888888776543 3567777777754211 1112345566666
Q ss_pred HHHHHhhHHHHhhcChhHH
Q 035814 103 SNLKCKVSHSYMIYHLSPV 121 (422)
Q Consensus 103 ~~L~~~y~~ey~~~~L~~l 121 (422)
+-....|-+-+..+|+..+
T Consensus 105 ~mi~k~l~~~L~k~Gv~~i 123 (176)
T PRK14151 105 ELTLKMFQDTLKRYQLEAV 123 (176)
T ss_pred HHHHHHHHHHHHHCCCEEe
Confidence 6666666666667777654
No 119
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.17 E-value=2.9e+02 Score=24.73 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=14.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 42 GSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAET 76 (422)
Q Consensus 42 ~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~ 76 (422)
+++.-.++...++++...|.......+.++++++.
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~ 56 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEE 56 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444433
No 120
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=21.08 E-value=3.7e+02 Score=22.76 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 50 AFCLQRNKDKFDKMRAAEKQKFDDAE 75 (422)
Q Consensus 50 ~~~L~~e~~~l~~~~~~~~~~i~~l~ 75 (422)
....+.+..++..+++..+..+.+++
T Consensus 76 ~~~k~~ei~~l~~~l~~l~~~~~k~e 101 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELKSEISKLE 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333333333
No 121
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=21.06 E-value=96 Score=26.70 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=30.2
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLD 82 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~ 82 (422)
+.|+.+-.+|..-.+.+..++...+++...++.-+.+-+.|+.++..++
T Consensus 50 r~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE 98 (116)
T PF05064_consen 50 RQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLE 98 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666666666666666554443
No 122
>PRK00295 hypothetical protein; Provisional
Probab=20.52 E-value=4.2e+02 Score=20.63 Aligned_cols=39 Identities=3% Similarity=0.047 Sum_probs=22.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 43 SRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTL 81 (422)
Q Consensus 43 ~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i 81 (422)
+-.-+-+++-.+.-.+.|++.+..+.++|++|+.-+..+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555556666666666666666666544433
No 123
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=20.45 E-value=1.6e+02 Score=25.43 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=31.0
Q ss_pred HHHHHHhhhHHHHhhcCCCCCCCch-hhHHHHHHHHHhcc
Q 035814 120 PVAYSLAFPLFIRTFQGWDPLQNPS-YQLELVSMWRQVLD 158 (422)
Q Consensus 120 ~lav~~v~Pllr~~~~~WdPL~~P~-~~l~~l~~wk~lL~ 158 (422)
.+.+++--|++|+--.+||-..+|. .....+.+|+.++.
T Consensus 12 gllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l 51 (125)
T KOG4831|consen 12 GLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFL 51 (125)
T ss_pred HHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHH
Confidence 4567788899999999999998884 45567788888874
No 124
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=20.34 E-value=4.6e+02 Score=21.07 Aligned_cols=53 Identities=8% Similarity=0.255 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHh
Q 035814 52 CLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCK 108 (422)
Q Consensus 52 ~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~ 108 (422)
+|++|.+.|++....-+.-++.|+....-++.+.... -+...+...+.++.++
T Consensus 2 aL~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~~----~~t~~LLd~w~~IlSQ 54 (78)
T PF08651_consen 2 ALEKELEQLRKINPVIEGLIETLRSAKSNMNRVQETV----ESTNTLLDKWIRILSQ 54 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 5777888777777766666666666666666665431 1334455555555554
No 125
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.33 E-value=2.5e+02 Score=24.10 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=36.1
Q ss_pred cchhhhhcccchhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 22 GVTGLAMLKNGTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDA 74 (422)
Q Consensus 22 ~~~~~~~~~~~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l 74 (422)
||.-.-||..-+-.+=+.+.++...++.+.+|+..++=+++.+...++.++.|
T Consensus 55 svgrmF~l~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nLrel 107 (114)
T KOG3501|consen 55 SVGRMFMLSDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNLREL 107 (114)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455444444447888888888888888888888888877766655543
No 126
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=20.32 E-value=5.6e+02 Score=28.03 Aligned_cols=78 Identities=12% Similarity=0.040 Sum_probs=45.6
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhcC-------CCCCCHHHHHHHHHHHHH
Q 035814 39 GNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLD----QIQKKNS-------LGTLTLESLANDFSNLKC 107 (422)
Q Consensus 39 ~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~----~~~~~~~-------~~~~tl~~l~~~f~~L~~ 107 (422)
--+++|...+++.++..+.+...+++..+.+++.+|.+.+..+. .++-+.. .-.-.=+++....++++.
T Consensus 203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleD 282 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELED 282 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34677777788888888888888887777777665544332222 2211100 001122446667788888
Q ss_pred hhHHHHhhc
Q 035814 108 KVSHSYMIY 116 (422)
Q Consensus 108 ~y~~ey~~~ 116 (422)
+|.+...++
T Consensus 283 kyAE~m~~~ 291 (596)
T KOG4360|consen 283 KYAECMQML 291 (596)
T ss_pred HHHHHHHHH
Confidence 888765544
No 127
>PRK14154 heat shock protein GrpE; Provisional
Probab=20.31 E-value=7.7e+02 Score=23.64 Aligned_cols=102 Identities=11% Similarity=-0.008 Sum_probs=65.9
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcC---CCCCCHHHHHHHHHH
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNS---LGTLTLESLANDFSN 104 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~---~~~~tl~~l~~~f~~ 104 (422)
.+|-...+++..-+|+...+.-|-+.+++..+++++.+.+ +.+++..++.|..... .....+..+..-++-
T Consensus 59 ~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGvem 138 (208)
T PRK14154 59 GQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSL 138 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHH
Confidence 3455666677777788888888888888888887777553 3567777777754311 111234566666777
Q ss_pred HHHhhHHHHhhcChhHHHH---HHhhhHHHHhhc
Q 035814 105 LKCKVSHSYMIYHLSPVAY---SLAFPLFIRTFQ 135 (422)
Q Consensus 105 L~~~y~~ey~~~~L~~lav---~~v~Pllr~~~~ 135 (422)
...+|-.-...+|+..+-. .-.=|-+.+++.
T Consensus 139 i~k~l~~vL~k~GVe~I~~~~G~~FDP~~HEAv~ 172 (208)
T PRK14154 139 TLDLLHNTLAKHGVQVINPNPGDPFDPALHEAMS 172 (208)
T ss_pred HHHHHHHHHHHCCCEEecCCCCCCCChhHhheee
Confidence 7777777777788877632 244455655554
No 128
>PHA01750 hypothetical protein
Probab=20.14 E-value=1.5e+02 Score=23.42 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035814 54 QRNKDKFDKMRAAEKQKFDDAE 75 (422)
Q Consensus 54 ~~e~~~l~~~~~~~~~~i~~l~ 75 (422)
.+|...|..+++..+.++++++
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~ 62 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELS 62 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH
Confidence 3455555555555555555443
No 129
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.09 E-value=1.6e+02 Score=23.62 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHH
Q 035814 69 QKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSN 104 (422)
Q Consensus 69 ~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~ 104 (422)
+.+.+|+.|++.++ ++.++|++....|++
T Consensus 8 eal~~LE~IV~~LE-------~g~l~Leesl~lyee 36 (75)
T PRK14066 8 TALKKLEEVVKKLE-------GGELSLDDSLKAFEE 36 (75)
T ss_pred HHHHHHHHHHHHHH-------CCCCCHHHHHHHHHH
Confidence 34555566555544 578899998887775
No 130
>PRK04325 hypothetical protein; Provisional
Probab=20.08 E-value=3.7e+02 Score=21.27 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=23.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 43 SRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTL 81 (422)
Q Consensus 43 ~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i 81 (422)
+-.-+-+++-.+.-.+.|++.+..+.++|++|+.-++.+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555556677777777777777666555444
No 131
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.01 E-value=5.5e+02 Score=25.03 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 59 KFDKMRAAEKQKFDDAETVLNTLD 82 (422)
Q Consensus 59 ~l~~~~~~~~~~i~~l~~i~~~i~ 82 (422)
.+...+++.+-|+.+|+.++..|+
T Consensus 167 ~l~~~ierhk~Hi~kLE~lLR~L~ 190 (233)
T PF04065_consen 167 ELESRIERHKFHIEKLELLLRLLD 190 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777888888888776
Done!