Query 035814
Match_columns 422
No_of_seqs 170 out of 289
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w6b_A RHO guanine nucleotide 80.9 4 0.00014 29.6 5.7 37 45-81 14-50 (56)
2 2akf_A Coronin-1A; coiled coil 68.7 11 0.00038 23.8 4.7 28 52-79 3-30 (32)
3 3nmd_A CGMP dependent protein 58.7 6.5 0.00022 30.3 2.8 38 38-75 30-67 (72)
4 3a2a_A Voltage-gated hydrogen 54.5 32 0.0011 24.9 5.7 42 38-79 8-49 (58)
5 1t3j_A Mitofusin 1; coiled coi 52.1 42 0.0015 27.1 6.8 31 58-88 50-80 (96)
6 3etv_A Protein transport prote 45.8 62 0.0021 32.0 8.2 35 27-61 2-36 (355)
7 3he5_B Synzip2; heterodimeric 44.4 53 0.0018 22.6 5.2 27 50-76 19-45 (52)
8 3l4f_A RHO guanine nucleotide 38.2 78 0.0027 23.4 5.7 40 46-85 12-51 (61)
9 3m91_A Proteasome-associated A 34.7 1.2E+02 0.0041 21.5 6.1 42 40-81 8-49 (51)
10 3vmx_A Voltage-gated hydrogen 30.8 1.4E+02 0.0046 21.1 5.7 40 40-79 3-42 (48)
11 2wt7_A Proto-oncogene protein 29.9 1.3E+02 0.0044 21.9 5.9 26 49-74 24-49 (63)
12 1gmj_A ATPase inhibitor; coile 29.2 1.4E+02 0.0049 23.4 6.3 32 45-79 37-68 (84)
13 1vp7_A Exodeoxyribonuclease VI 29.1 75 0.0026 25.8 4.9 29 69-104 34-62 (100)
14 3m48_A General control protein 28.3 66 0.0023 20.9 3.4 26 53-78 5-30 (33)
15 1g6u_A Domain swapped dimer; d 28.0 1.3E+02 0.0045 20.3 5.0 37 37-73 9-45 (48)
16 3efg_A Protein SLYX homolog; x 27.8 1.6E+02 0.0056 22.5 6.4 42 41-82 14-55 (78)
17 3e98_A GAF domain of unknown f 27.8 2E+02 0.0068 26.7 8.4 43 39-81 70-112 (252)
18 1ci6_A Transcription factor AT 27.6 1.2E+02 0.004 22.2 5.3 29 48-76 23-51 (63)
19 2pag_A Hypothetical protein; n 27.0 31 0.0011 29.2 2.3 44 75-118 2-47 (135)
20 3c3f_A Alpha/beta peptide with 26.7 1.3E+02 0.0046 19.5 4.7 21 45-65 5-25 (34)
21 1hjb_A Ccaat/enhancer binding 26.7 1.2E+02 0.0042 23.8 5.6 24 53-76 48-71 (87)
22 3qne_A Seryl-tRNA synthetase, 26.4 25 0.00084 36.5 1.9 33 34-66 33-65 (485)
23 1wle_A Seryl-tRNA synthetase; 25.9 65 0.0022 33.4 5.0 34 34-67 70-103 (501)
24 1t2k_D Cyclic-AMP-dependent tr 25.9 1.5E+02 0.005 21.4 5.6 25 50-74 24-48 (61)
25 4ani_A Protein GRPE; chaperone 25.8 3.8E+02 0.013 24.4 11.4 87 35-121 67-161 (213)
26 2oxj_A Hybrid alpha/beta pepti 25.6 1.4E+02 0.0049 19.4 4.7 20 46-65 6-25 (34)
27 2dq0_A Seryl-tRNA synthetase; 25.3 23 0.00078 36.3 1.4 33 34-66 31-63 (455)
28 1kd8_B GABH BLL, GCN4 acid bas 24.5 1.6E+02 0.0053 19.4 4.9 23 44-66 4-26 (36)
29 1go4_E MAD1 (mitotic arrest de 23.5 1E+02 0.0035 25.0 4.6 31 48-78 12-42 (100)
30 2wvr_A Geminin; DNA replicatio 22.6 1.7E+02 0.0059 26.6 6.5 34 52-85 126-159 (209)
31 1a92_A Delta antigen; leucine 22.6 1.6E+02 0.0054 20.8 4.8 29 48-76 7-35 (50)
32 3qh9_A Liprin-beta-2; coiled-c 22.4 1.9E+02 0.0065 22.5 5.8 39 41-79 26-64 (81)
33 3a6m_A Protein GRPE, HSP-70 co 22.1 1.3E+02 0.0046 26.6 5.7 85 36-120 28-118 (177)
34 2wt7_A Proto-oncogene protein 22.0 2.3E+02 0.0078 20.5 6.2 32 47-78 29-60 (63)
35 4etp_A Kinesin-like protein KA 21.8 1.9E+02 0.0066 28.8 7.4 37 42-78 4-40 (403)
36 1fxk_C Protein (prefoldin); ar 21.7 2E+02 0.0069 23.6 6.5 44 43-86 3-46 (133)
37 1kd8_A GABH AIV, GCN4 acid bas 21.4 1.8E+02 0.0062 19.1 4.6 23 44-66 4-26 (36)
38 3a7p_A Autophagy protein 16; c 20.7 4.2E+02 0.014 23.0 8.5 61 44-111 64-128 (152)
39 2wq1_A General control protein 20.7 1.8E+02 0.0062 18.8 4.7 21 45-65 4-24 (33)
No 1
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=80.86 E-value=4 Score=29.61 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=33.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 45 IKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTL 81 (422)
Q Consensus 45 ~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i 81 (422)
..+|++..|++|-.++.+.++.|++.-++||.++..+
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999988765
No 2
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=68.71 E-value=11 Score=23.82 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 52 CLQRNKDKFDKMRAAEKQKFDDAETVLN 79 (422)
Q Consensus 52 ~L~~e~~~l~~~~~~~~~~i~~l~~i~~ 79 (422)
.|+.+..+++..+...++++++|++-+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888999999888889999887654
No 3
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=58.72 E-value=6.5 Score=30.26 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=18.3
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAE 75 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~ 75 (422)
..+.++|.-..++..|+.+......++...+.+++++.
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444555555555555555444444444443
No 4
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=54.50 E-value=32 Score=24.93 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=32.6
Q ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 38 AGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLN 79 (422)
Q Consensus 38 ~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~ 79 (422)
++++++-.-|+....|-...+.|+..-...+++|.||..++.
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888888888888888888988888775
No 5
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=52.08 E-value=42 Score=27.09 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035814 58 DKFDKMRAAEKQKFDDAETVLNTLDQIQKKN 88 (422)
Q Consensus 58 ~~l~~~~~~~~~~i~~l~~i~~~i~~~~~~~ 88 (422)
..|+.+++..+++|.+|+.+......++..+
T Consensus 50 ~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA 80 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEKMQNNSKLLRNKA 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4555666666777888888888888777643
No 6
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=45.80 E-value=62 Score=31.97 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=17.5
Q ss_pred hhcccchhhHhhchhhhhhhhhhHHHHHHHHHHHH
Q 035814 27 AMLKNGTKAQLAGNDGSRIKKETAFCLQRNKDKFD 61 (422)
Q Consensus 27 ~~~~~~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~ 61 (422)
||.-||-.-++.+|.+|+.-+++...|-.+.++++
T Consensus 2 ~M~l~~i~DLl~id~~I~~i~~eRd~La~~lq~~~ 36 (355)
T 3etv_A 2 AMGMNGIDDLLNINDRIKQVQNERNELASKLQNLK 36 (355)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 67678888889999888877777666666666555
No 7
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=44.41 E-value=53 Score=22.61 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 50 AFCLQRNKDKFDKMRAAEKQKFDDAET 76 (422)
Q Consensus 50 ~~~L~~e~~~l~~~~~~~~~~i~~l~~ 76 (422)
...|+++.+.+++.++..+++|.+++.
T Consensus 19 nlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 19 NLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 346777777888888877777777765
No 8
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=38.17 E-value=78 Score=23.41 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035814 46 KKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQ 85 (422)
Q Consensus 46 e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~ 85 (422)
.+|++..|++|.+++..-++.+.+.-++|+.++..+-.-.
T Consensus 12 lkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~ 51 (61)
T 3l4f_A 12 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4789999999999999999999999999999887765433
No 9
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=34.72 E-value=1.2e+02 Score=21.54 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=30.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 40 NDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTL 81 (422)
Q Consensus 40 d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i 81 (422)
..+++.-+.+...|...=++|.+.+...+.+|.+|.+.++.+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556667777788888888888888888888777766654
No 10
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=30.83 E-value=1.4e+02 Score=21.07 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=25.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 40 NDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLN 79 (422)
Q Consensus 40 d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~ 79 (422)
++++-.-|.-...|-.....++..-+..+++|.||..++.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4445555555556666666666666666677777776653
No 11
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=29.93 E-value=1.3e+02 Score=21.92 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 49 TAFCLQRNKDKFDKMRAAEKQKFDDA 74 (422)
Q Consensus 49 ~~~~L~~e~~~l~~~~~~~~~~i~~l 74 (422)
.+..|+.+.+.|..+-+..+.+|+.|
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 12
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.22 E-value=1.4e+02 Score=23.40 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 45 IKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLN 79 (422)
Q Consensus 45 ~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~ 79 (422)
.++++...| ++++..+++..+++|++++..++
T Consensus 37 kekEqL~~L---Kkkl~~el~~h~~ei~~le~~i~ 68 (84)
T 1gmj_A 37 RAKEQLAAL---KKHKENEISHHAKEIERLQKEIE 68 (84)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 33344555555555555555443
No 13
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=29.06 E-value=75 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHH
Q 035814 69 QKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSN 104 (422)
Q Consensus 69 ~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~ 104 (422)
+.+.+|+.|++.|+ ++.++|++....|++
T Consensus 34 eal~eLEeIV~~LE-------~gel~LEesl~lyee 62 (100)
T 1vp7_A 34 TALAELESLVSAME-------NGTLPLEQSLSAYRR 62 (100)
T ss_dssp HHHHHHHHHHHHHH-------TTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------cCCCCHHHHHHHHHH
Confidence 34555666555554 467888887777664
No 14
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=28.34 E-value=66 Score=20.87 Aligned_cols=26 Identities=4% Similarity=0.063 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 53 LQRNKDKFDKMRAAEKQKFDDAETVL 78 (422)
Q Consensus 53 L~~e~~~l~~~~~~~~~~i~~l~~i~ 78 (422)
||...+.|..+-...+.++.||.+++
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44455555555555555556665554
No 15
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.96 E-value=1.3e+02 Score=20.28 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=24.9
Q ss_pred hhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 37 LAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD 73 (422)
Q Consensus 37 ~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~ 73 (422)
+|.=++--+.-+...+|+.|.+.+++.++..+.+++-
T Consensus 9 lqalkkegfspeelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 9 LQALKKEGFSPEELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566677788888888888887776665543
No 16
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.85 E-value=1.6e+02 Score=22.51 Aligned_cols=42 Identities=5% Similarity=-0.086 Sum_probs=28.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 41 DGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLD 82 (422)
Q Consensus 41 ~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~ 82 (422)
.++-.-+-+++-.+.-.+.|+..+..+.+.|++|+.-+..+.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666667777777777777777777777666554
No 17
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=27.81 E-value=2e+02 Score=26.75 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=26.5
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 39 GNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTL 81 (422)
Q Consensus 39 ~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i 81 (422)
..+|+...|+++..|+.+...|.......+.-.+++..+.-.+
T Consensus 70 ~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~L 112 (252)
T 3e98_A 70 VERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDL 112 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777777766665555555555544333
No 18
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.59 E-value=1.2e+02 Score=22.24 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 48 ETAFCLQRNKDKFDKMRAAEKQKFDDAET 76 (422)
Q Consensus 48 d~~~~L~~e~~~l~~~~~~~~~~i~~l~~ 76 (422)
+....|+.+.+.|..+-+..+.+|+.|+.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444444443
No 19
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=26.97 E-value=31 Score=29.16 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhh--cCCCCCCHHHHHHHHHHHHHhhHHHHhhcCh
Q 035814 75 ETVLNTLDQIQKK--NSLGTLTLESLANDFSNLKCKVSHSYMIYHL 118 (422)
Q Consensus 75 ~~i~~~i~~~~~~--~~~~~~tl~~l~~~f~~L~~~y~~ey~~~~L 118 (422)
+++++.|..+.++ ...+..|-+++.+.=+.|.-+||++|+.|=+
T Consensus 2 ~~~ie~L~~~~~~~~~~~~~~t~e~I~~~E~~Lgi~fP~dYk~fl~ 47 (135)
T 2pag_A 2 EEVIEQLREANEPVPVPLELPDEDQLVEIEEQLFINIPFVFKEFLL 47 (135)
T ss_dssp HHHHHHHHHHCCCCSSCCCCCCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred hHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 3455555555433 3356778999988888999999999997544
No 20
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.69 E-value=1.3e+02 Score=19.48 Aligned_cols=21 Identities=5% Similarity=-0.111 Sum_probs=9.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 035814 45 IKKETAFCLQRNKDKFDKMRA 65 (422)
Q Consensus 45 ~e~d~~~~L~~e~~~l~~~~~ 65 (422)
+-.|++..|-.+++.|+.+++
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHH
Confidence 344455555555544444443
No 21
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.67 E-value=1.2e+02 Score=23.84 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 53 LQRNKDKFDKMRAAEKQKFDDAET 76 (422)
Q Consensus 53 L~~e~~~l~~~~~~~~~~i~~l~~ 76 (422)
|+.|-..|..+++..+.++..|..
T Consensus 48 Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 48 LTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333
No 22
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.39 E-value=25 Score=36.45 Aligned_cols=33 Identities=6% Similarity=-0.156 Sum_probs=17.5
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAA 66 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~ 66 (422)
.+|+..|.+.|..+-+...|+.++..+.+++..
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555443
No 23
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.93 E-value=65 Score=33.37 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=25.6
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAE 67 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~ 67 (422)
.+|+..|.+.|..+-+...|+.++.++.+++...
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778877777777777887777777777653
No 24
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.90 E-value=1.5e+02 Score=21.35 Aligned_cols=25 Identities=4% Similarity=0.143 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 50 AFCLQRNKDKFDKMRAAEKQKFDDA 74 (422)
Q Consensus 50 ~~~L~~e~~~l~~~~~~~~~~i~~l 74 (422)
+..|+.+.+.+..+-...+.++..|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333333
No 25
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.75 E-value=3.8e+02 Score=24.40 Aligned_cols=87 Identities=9% Similarity=0.067 Sum_probs=49.2
Q ss_pred hHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhcC--CCCCCHHHHHHHHHHHH
Q 035814 35 AQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDD------AETVLNTLDQIQKKNS--LGTLTLESLANDFSNLK 106 (422)
Q Consensus 35 ~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~------l~~i~~~i~~~~~~~~--~~~~tl~~l~~~f~~L~ 106 (422)
+|-....++...+|+...+.-|-+.+++..+++...+.+ +.+++..++.|..... ...-.+..+..-++-+.
T Consensus 67 ~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~eGvemi~ 146 (213)
T 4ani_A 67 QIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETDNEQAKSILQGMEMVY 146 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 333455555566666666666777777776666655442 3667777777754311 12224555555555555
Q ss_pred HhhHHHHhhcChhHH
Q 035814 107 CKVSHSYMIYHLSPV 121 (422)
Q Consensus 107 ~~y~~ey~~~~L~~l 121 (422)
..+-+-...+|+..+
T Consensus 147 k~l~~~L~k~Gv~~I 161 (213)
T 4ani_A 147 RSLVDALKKEGVEAI 161 (213)
T ss_dssp HHHHHHHHHTTEECC
T ss_pred HHHHHHHHHCCCEEe
Confidence 555555555555443
No 26
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=25.56 E-value=1.4e+02 Score=19.38 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=9.4
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 035814 46 KKETAFCLQRNKDKFDKMRA 65 (422)
Q Consensus 46 e~d~~~~L~~e~~~l~~~~~ 65 (422)
-.|++..|-.+++.|+.+++
T Consensus 6 LE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHH
Confidence 34444445445444444433
No 27
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.25 E-value=23 Score=36.28 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=23.1
Q ss_pred hhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035814 34 KAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAA 66 (422)
Q Consensus 34 ~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~ 66 (422)
.+|+..|.+.|...-+...|+.++.++.+++..
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777766664
No 28
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=24.47 E-value=1.6e+02 Score=19.44 Aligned_cols=23 Identities=13% Similarity=-0.051 Sum_probs=10.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 035814 44 RIKKETAFCLQRNKDKFDKMRAA 66 (422)
Q Consensus 44 r~e~d~~~~L~~e~~~l~~~~~~ 66 (422)
.+-+|+++.|-.++..|+.++++
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~R 26 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVAR 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHH
Confidence 33445555555555444444433
No 29
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.48 E-value=1e+02 Score=25.02 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 48 ETAFCLQRNKDKFDKMRAAEKQKFDDAETVL 78 (422)
Q Consensus 48 d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~ 78 (422)
+++..|+.+.+.|+.+-++.+++++.|+.-+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444
No 30
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.64 E-value=1.7e+02 Score=26.61 Aligned_cols=34 Identities=3% Similarity=0.095 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035814 52 CLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQ 85 (422)
Q Consensus 52 ~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~ 85 (422)
.|+.|...|.++.+..+.-+++++.+.+.|+.+.
T Consensus 126 ~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 126 QKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444445555555555554
No 31
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=22.58 E-value=1.6e+02 Score=20.76 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 48 ETAFCLQRNKDKFDKMRAAEKQKFDDAET 76 (422)
Q Consensus 48 d~~~~L~~e~~~l~~~~~~~~~~i~~l~~ 76 (422)
++.+.-+...++++..+-..++.|++|++
T Consensus 7 eqWv~~Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 7 EQWVSGRKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34555566777777777777777776665
No 32
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=22.45 E-value=1.9e+02 Score=22.51 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=28.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 41 DGSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLN 79 (422)
Q Consensus 41 ~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~ 79 (422)
+.++.-|-++.-++.|+-+.+..+..-+.++..|...++
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 356667778888888888888888887777766665554
No 33
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=22.13 E-value=1.3e+02 Score=26.60 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=47.1
Q ss_pred HhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhh
Q 035814 36 QLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFD------DAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKV 109 (422)
Q Consensus 36 i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~------~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y 109 (422)
+-....++...+|+...+.-|-+.+++..+++...+. -+.+++..++.|........-+...+..-++-+..++
T Consensus 28 ~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~l~~Gv~m~~~~l 107 (177)
T 3a6m_A 28 LKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEASPESIRQGVRAIRDGF 107 (177)
T ss_dssp TTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccHHHHHHHHHHHHHHH
Confidence 3345566666777777777777777777777665543 3456666666665421111112444545555555555
Q ss_pred HHHHhhcChhH
Q 035814 110 SHSYMIYHLSP 120 (422)
Q Consensus 110 ~~ey~~~~L~~ 120 (422)
-+-...+|+..
T Consensus 108 ~~~L~k~Gv~~ 118 (177)
T 3a6m_A 108 FRILAGLGVEE 118 (177)
T ss_dssp HHHHHHTTCEE
T ss_pred HHHHHHCCCEE
Confidence 55445555443
No 34
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.01 E-value=2.3e+02 Score=20.49 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 47 KETAFCLQRNKDKFDKMRAAEKQKFDDAETVL 78 (422)
Q Consensus 47 ~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~ 78 (422)
.+++..|+.+-..|..+++..+.++..|..++
T Consensus 29 e~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 35
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.76 E-value=1.9e+02 Score=28.76 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=18.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 42 GSRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVL 78 (422)
Q Consensus 42 ~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~ 78 (422)
++...+.++..|++++++++..++..+.+++.+++.+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555444433
No 36
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.73 E-value=2e+02 Score=23.56 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=35.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035814 43 SRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQK 86 (422)
Q Consensus 43 ~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~ 86 (422)
++.-......++.+.+.+.......+..+..++..++.|+.+..
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~ 46 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44555666778888888888888888888888899999888873
No 37
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=21.42 E-value=1.8e+02 Score=19.12 Aligned_cols=23 Identities=4% Similarity=-0.067 Sum_probs=11.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 035814 44 RIKKETAFCLQRNKDKFDKMRAA 66 (422)
Q Consensus 44 r~e~d~~~~L~~e~~~l~~~~~~ 66 (422)
.+-.|++..|-.++..|..++++
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~R 26 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVAR 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHH
Confidence 34445555555555555544443
No 38
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=20.72 E-value=4.2e+02 Score=22.99 Aligned_cols=61 Identities=16% Similarity=0.048 Sum_probs=37.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhhHH
Q 035814 44 RIKKETAFCLQRNKDKFDKMRAAEKQKFDDAET----VLNTLDQIQKKNSLGTLTLESLANDFSNLKCKVSH 111 (422)
Q Consensus 44 r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~----i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y~~ 111 (422)
+.+++.+..|+.|...+...+...+..++.-.. +.+.+..++ +.+..+...+.+|+.++.+
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq-------lq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT-------IENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888777776655543333 333333333 3455666777777776543
No 39
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.71 E-value=1.8e+02 Score=18.78 Aligned_cols=21 Identities=5% Similarity=-0.293 Sum_probs=10.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 035814 45 IKKETAFCLQRNKDKFDKMRA 65 (422)
Q Consensus 45 ~e~d~~~~L~~e~~~l~~~~~ 65 (422)
+-.|+++.|-.++..+..+++
T Consensus 4 QLEdKVEell~~~~~le~EV~ 24 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 344555555555555444443
Done!