Query 035814
Match_columns 422
No_of_seqs 170 out of 289
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 10:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035814.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035814hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zavu1 a.108.1.1 (U:1-30) Rib 41.0 15 0.0011 21.4 3.4 27 74-109 3-29 (30)
2 d1vp7a_ a.7.13.1 (A:) Exonucle 37.4 24 0.0017 24.8 4.9 29 69-104 10-38 (68)
3 d1seta1 a.2.7.1 (A:1-110) Sery 34.6 36 0.0026 25.5 6.0 34 33-66 27-60 (110)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 26.5 73 0.0053 24.2 6.7 44 43-86 3-46 (133)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 24.5 53 0.0039 25.1 5.4 48 25-72 79-126 (133)
6 d2paga1 d.369.1.1 (A:1-135) Hy 24.4 17 0.0013 28.9 2.3 43 74-116 1-45 (135)
7 d2icga1 d.369.1.1 (A:1-158) Un 17.4 41 0.003 26.4 3.3 26 90-115 23-48 (158)
8 d1nkta3 c.37.1.19 (A:-15-225,A 15.4 67 0.0049 28.7 4.4 39 69-109 28-66 (288)
9 d1fxka_ a.2.5.1 (A:) Prefoldin 15.4 1.5E+02 0.011 21.6 6.1 44 43-86 3-46 (107)
10 d1ivsa1 a.2.7.3 (A:797-862) Va 14.2 91 0.0066 21.0 4.0 26 53-78 2-27 (66)
No 1
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=40.98 E-value=15 Score=21.41 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhh
Q 035814 74 AETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKV 109 (422)
Q Consensus 74 l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y 109 (422)
+++|+++|+ ++|..++++....|..+|
T Consensus 3 ~eeiv~aie---------kltvaelaelvk~ledkf 29 (30)
T d1zavu1 3 IDEIIEAIE---------KLTVSELAELVKKLEDKF 29 (30)
T ss_dssp HHHHHHHHH---------HSBHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH---------HhhHHHHHHHHHHHHhhc
Confidence 455666655 357777877777777765
No 2
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=37.43 E-value=24 Score=24.79 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHH
Q 035814 69 QKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSN 104 (422)
Q Consensus 69 ~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~ 104 (422)
+.+++|++|++.++ ++.++|++....|++
T Consensus 10 e~l~~LE~IV~~LE-------~g~l~Leesl~~ye~ 38 (68)
T d1vp7a_ 10 TALAELESLVSAME-------NGTLPLEQSLSAYRR 38 (68)
T ss_dssp HHHHHHHHHHHHHH-------TTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-------CCCCCHHHHHHHHHH
Confidence 34666666666554 477899998777764
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=34.57 E-value=36 Score=25.47 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=26.6
Q ss_pred hhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 035814 33 TKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAA 66 (422)
Q Consensus 33 ~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~ 66 (422)
-..|+..|.+.|...-+...|+.++..+.+++..
T Consensus 27 ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k 60 (110)
T d1seta1 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK 60 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888888888888777753
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.47 E-value=73 Score=24.20 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=32.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035814 43 SRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQK 86 (422)
Q Consensus 43 ~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~ 86 (422)
+..-..+...|+.+.+.+...++..+..+..++...+.|+.+.+
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~ 46 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG 46 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445556677777888888888888888888888888888864
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.52 E-value=53 Score=25.08 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=22.7
Q ss_pred hhhhcccchhhHhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 25 GLAMLKNGTKAQLAGNDGSRIKKETAFCLQRNKDKFDKMRAAEKQKFD 72 (422)
Q Consensus 25 ~~~~~~~~~~~i~~~d~~~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~ 72 (422)
|..+=++.++++=-.+++++.-+..+..|+.+..++...+......++
T Consensus 79 g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~ 126 (133)
T d1fxkc_ 79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444554455555555555555555555444444444443333
No 6
>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=24.41 E-value=17 Score=28.88 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhhc--CCCCCCHHHHHHHHHHHHHhhHHHHhhc
Q 035814 74 AETVLNTLDQIQKKN--SLGTLTLESLANDFSNLKCKVSHSYMIY 116 (422)
Q Consensus 74 l~~i~~~i~~~~~~~--~~~~~tl~~l~~~f~~L~~~y~~ey~~~ 116 (422)
|++|++.|..+.+.. .....|-+++.++=++|...||++|+.|
T Consensus 1 ~~eiie~L~~~~~~~p~~~e~pt~e~I~~~E~~lg~~~P~~yk~f 45 (135)
T d2paga1 1 LEEVIEQLREANEPVPVPLELPDEDQLVEIEEQLFINIPFVFKEF 45 (135)
T ss_dssp CHHHHHHHHHHCCCCSSCCCCCCHHHHHHHHHHHTCCCCHHHHHH
T ss_pred ChHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH
Confidence 356677777776542 1234588899888899999999999975
No 7
>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]}
Probab=17.43 E-value=41 Score=26.39 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhHHHHhh
Q 035814 90 LGTLTLESLANDFSNLKCKVSHSYMI 115 (422)
Q Consensus 90 ~~~~tl~~l~~~f~~L~~~y~~ey~~ 115 (422)
.++.|-+++...=++|..++|++|+.
T Consensus 23 ~~~at~E~I~~~E~~LG~~lP~~Yr~ 48 (158)
T d2icga1 23 SGTGTPELIKIYQDALGNEFPETYKL 48 (158)
T ss_dssp CCCCCHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHH
Confidence 56788888877777899999999986
No 8
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.43 E-value=67 Score=28.65 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhh
Q 035814 69 QKFDDAETVLNTLDQIQKKNSLGTLTLESLANDFSNLKCKV 109 (422)
Q Consensus 69 ~~i~~l~~i~~~i~~~~~~~~~~~~tl~~l~~~f~~L~~~y 109 (422)
+.+++++.+++.|..++++- ..+|-+++.....+|+.++
T Consensus 28 R~LKr~~~iV~kIN~LE~el--~~LSDeEL~~kT~eLK~rl 66 (288)
T d1nkta3 28 RMVKRLKKVADYVGTLSDDV--EKLTDAELRAKTDEFKRRL 66 (288)
T ss_dssp HHHHHHHHHHHHHHHTHHHH--HTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHH
Confidence 34555555555555555432 2455555655555555554
No 9
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=15.43 E-value=1.5e+02 Score=21.60 Aligned_cols=44 Identities=9% Similarity=0.152 Sum_probs=33.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035814 43 SRIKKETAFCLQRNKDKFDKMRAAEKQKFDDAETVLNTLDQIQK 86 (422)
Q Consensus 43 ~r~e~d~~~~L~~e~~~l~~~~~~~~~~i~~l~~i~~~i~~~~~ 86 (422)
++..-.+...|+.+...+.......+.++...+.+++.|+.+..
T Consensus 3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~ 46 (107)
T d1fxka_ 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAAD 46 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 44555667778888888888888888888888888888887764
No 10
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=14.19 E-value=91 Score=20.95 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035814 53 LQRNKDKFDKMRAAEKQKFDDAETVL 78 (422)
Q Consensus 53 L~~e~~~l~~~~~~~~~~i~~l~~i~ 78 (422)
++.|+++|.+.++..+.++++++.-+
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL 27 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777776666544
Done!